128 results on '"Jinxin Che"'
Search Results
52. Registered trials on novel therapies for myasthenia gravis: a cross-sectional study on ClinicalTrials.gov
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Xingyue Li, Jinxin Chen, Youtao Wang, Siwei Zheng, Kun Wan, and Xiaodong Liu
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Medicine ,Science - Abstract
Abstract Novel biologics in MG therapy research is on the rise. This research aimed to investigate the characteristics of registered trials on novel therapies for myasthenia gravis on ClinicalTrials.gov. This cross-sectional study used a descriptive approach to assess the features of the included trials on ClinicalTrials.gov. We found 62 registered trials from 2007 to 2023 on ClinicalTrials.gov. The results showed a yearly rise in the number of registered trials (r = 0.76, p
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- 2024
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53. Comprehensive analysis of annexin gene family and its expression in response to branching architecture and salt stress in crape myrtle
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Hui Wei, Jinxin Chen, Xingyue Zhang, Zixuan Lu, Bilin Lian, Guoyuan Liu, Yanhong Chen, Fei Zhong, Chunmei Yu, and Jian Zhang
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Crape myrtle ,Annexin ,Branching architecture ,Salt treatment ,Botany ,QK1-989 - Abstract
Abstract Background Annexin (ANN) is calcium (Ca2+)-dependent and phospholipid binding protein family, which is involved in plant growth and development and response to various stresses. However, little known about ANN genes were identified from crape myrtle, an ornamental horticultural plant widely cultivated in the world. Results Here, 9 LiANN genes were identified from Lagerstroemia indica, and their characterizations and functions were investigated in L. indica for the first time. The LiANN genes were divided into 2 subfamilies. The gene structure, chromosomal location, and collinearity relationship were also explored. In addition, the GO annotation analysis of these LiANNs indicated that they are enriched in molecular functions, cellular components, and biological processes. Moreover, transcription factors (TFs) prediction analysis revealed that bHLH, MYB, NAC, and other TFs can interact with the LiANN promoters. Interestingly, the LiANN2/4/6–9 were demonstrated to play critical roles in the branching architecture of crape myrtle. Furthermore, the LiANN2/6/8/9 were differentially expressed under salt treatment, and a series of TFs regulating LiANN2/6/8/9 expression were predicted to play essential roles in salt resistance. Conclusions These results shed light on profile and function of the LiANN gene family, and lay a foundation for further studies of the LiANN genes.
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- 2024
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54. Compact Partially End-Pumped Innoslab Laser Based on Micro-Cylindrical Lens Array Homogenizer
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Xinhui Sun, Xiaonan Zhao, Jinxin Chen, Yajun Wu, Yibin Fu, Gang Cheng, Xi Chen, Pan Liu, Linhao Shang, Guangqiang Fan, Huihui Gao, Yan Xiang, and Tianshu Zhang
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Innoslab laser ,hybrid-resonator ,micro-cylindrical lens array homogenizer ,transverse spatial distributions ,Applied optics. Photonics ,TA1501-1820 - Abstract
We demonstrate a compact, partially end-pumping Innoslab laser based on a micro-cylindrical lens array homogenizer. A dimension of 12 × 0.4 mm2 flat-top pumping line with a Gaussian intensity distribution across the line was simulated by the ray tracing technique. The rate equations considering the asymmetric transverse spatial distributions are theoretically developed. The simulation results are in good agreement with the experimental results. Preliminary data shows that for a pump power of 260 W, a maximum pulse energy of 15.7 mJ was obtained with a pulse width of 8.5 ns at a repetition frequency of 1 kHz. The beam quality M2 factors in the unstable and stable directions were 1.732 and 1.485, respectively. The technology has been successfully applied to temperature and humidity profiling lidar and ozone lidar and has been productized, yielding direct economic value.
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- 2024
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55. Inhibiting ferroptosis: A novel approach for stroke therapeutics
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Yuxin Zhuang, Xiaowu Dong, Jinxin Che, Yizhen Jin, and Mei Liu
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0301 basic medicine ,Neurological function ,Models, Neurological ,Ischemia ,Bioinformatics ,Neuroprotection ,Food and drug administration ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,medicine ,Ferroptosis ,Humans ,cardiovascular diseases ,Stroke ,Cause of death ,Pharmacology ,Intracerebral hemorrhage ,business.industry ,medicine.disease ,030104 developmental biology ,Neuroprotective Agents ,030220 oncology & carcinogenesis ,business ,Signal Transduction - Abstract
Stroke ranks as the second leading cause of death across the globe. Despite advances in stroke therapeutics, no US Food and Drug Administration (FDA)-approved drugs that can minimize neuronal injury and restore neurological function are clinically available. Ferroptosis, a regulated iron-dependent form of nonapoptotic cell death, has been shown to contribute to stroke-mediated neuronal damage. Inhibitors of ferroptosis have also been validated in several stroke models of ischemia or intracerebral hemorrhage. Herein, we review the therapeutic activity of inhibitors of ferroptosis in stroke models. We further summarize previously reported neuroprotectants that show protective effects in stroke models that have been recently validated as ferroptosis inhibitors. These findings reveal new mechanisms for neuroprotection and highlight the importance of ferroptosis during stroke processes.
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- 2020
56. Isocitrate Dehydrogenase 2 Inhibitors for the Treatment of Hematologic Malignancies: Advances and Future Opportunities
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Tian Tian, Xiaowu Dong, Jinxin Che, Feng Huang, Yizhe Wu, and Haiyan Yang
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Pharmacology ,ISOCITRATE DEHYDROGENASE 2 ,Molecular Structure ,Cellular differentiation ,Mutant ,Antineoplastic Agents ,General Medicine ,Oxidative phosphorylation ,Biology ,IDH2 ,Isocitrate Dehydrogenase ,Hematologic Neoplasms ,Drug Discovery ,Cancer cell ,Mutation ,Cancer research ,Structure–activity relationship ,Humans ,Glycolysis ,Enzyme Inhibitors - Abstract
Tumor cells frequently reprogram cellular metabolism from oxidative phosphorylation to glycolysis. Isocitrate dehydrogenase 2 (IDH2) has been intensively studied due to its involvement in the metabolic activity of cancer cells. Mutations in IDH2 promote neomorphic activity through the generation of oncometabolite 2-hydroxyglutarate (2-HG). The overproduced 2-HG can competitively inhibit α-KG-dependent dioxygenases to trigger cell differentiation disorders, a major cause of blood tumors. This review outlines recent progress in the identification of IDH2 inhibitors in blood cancer to provide a reference for ongoing and future clinical studies.
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- 2020
57. Identification of new IDH2
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Xiaoyun, Chen, Xianmin, Wu, Jian, Gao, Huazhou, Ying, Xiaowu, Dong, Jinxin, Che, and Zhijian, Shen
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Molecular Docking Simulation ,Structure-Activity Relationship ,Pyrimidines ,Dose-Response Relationship, Drug ,Molecular Structure ,Cell Survival ,Humans ,Enzyme Inhibitors ,Isocitrate Dehydrogenase ,Cell Line - Abstract
Isocitrate dehydrogenase 2 (IDH2) is a key enzyme in the regulation of cell metabolism. Its mutated type can lead to the accumulation of 2-hydroxyglutarate, which is often related to malignancies such as acute myeloid leukemia. Therefore, it is necessary to find new inhibitors targeting mutant IDH2. Discriminatory analysis-based molecular docking was employed to screen the ChemDiv compound library, which resulted in the identification of three new IDH2
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- 2020
58. Metabolomics Reveals the Response of the Phenylpropanoid Biosynthesis Pathway to Starvation Treatment in the Grape Endophyte
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Yao, Lu, Jinxin, Che, Xiaoguang, Xu, Bing, Pang, Xixi, Zhao, Yanlin, Liu, and Junling, Shi
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Fungal Proteins ,Coumaric Acids ,Phenols ,Stilbenes ,Endophytes ,Alternaria ,Metabolomics ,Secondary Metabolism ,Quercetin ,Vitis ,Biosynthetic Pathways - Abstract
Phenylpropanoid (PPPN) compounds are widely used in agriculture, medical, food, and cosmetic industries because of their multiple bioactivities.
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- 2020
59. Compartmentalization of Incompatible Polymers within Metal-Organic Frameworks towards Homogenization of Heterogeneous Hybrid Catalysts for Tandem Reactions
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Yong Yang, Liang Gao, Xiao-Hua Li, Xiaowu Dong, Jun Zuo, Yongzhou Hu, Jin-Hao Zhao, Xin-Yuan Liu, and Jinxin Che
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chemistry.chemical_classification ,Tandem ,010405 organic chemistry ,Organic Chemistry ,General Chemistry ,Polymer ,010402 general chemistry ,01 natural sciences ,humanities ,Catalysis ,0104 chemical sciences ,Polymerization ,chemistry ,Cascade reaction ,Chemical engineering ,Knoevenagel condensation ,Metal-organic framework ,In situ polymerization - Abstract
New catalytic systems that contain incompatible catalytic sites were constructed by the in situ polymerization of acidic and basic polymers into metal-organic frameworks, which resulted in highly porous, recyclable, and durable catalytic composites with excellent compartmentalization, so that opposing agents were spatially isolated. These synthesized hybrid catalysts exhibited excellent catalytic activity for one-pot "wolf and lamb" reactions (deacetalization/Knoevenagel or Henry), which was attributed to their unique characteristic of having a locally homogeneous, but globally heterogeneous, structure.
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- 2018
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60. Bicyclo[2.2.1]heptane containing N,N′-diarylsquaramide CXCR2 selective antagonists as anti-cancer metastasis agents
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Zhi-Long Wang, Xiaowu Dong, Xin Xie, Yongzhou Hu, Jinxin Che, and Youhong Hu
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0301 basic medicine ,Bicyclic molecule ,Chemistry ,General Chemical Engineering ,Cancer ,General Chemistry ,Pharmacology ,medicine.disease ,In vitro ,03 medical and health sciences ,Chemokine receptor ,030104 developmental biology ,Pharmacokinetics ,In vivo ,medicine ,Microsome ,CXC chemokine receptors - Abstract
CXCR1 and CXCR2 are CXC chemokine receptors (CXCRs), corresponding to cytokines of the CXC chemokine family. CXCR2 was found to be 77% homologous to CXCR1. Antagonism of the chemokine receptor CXCR2 has been proposed as a new strategy for the treatment of metastatic cancer. In order to find a CXCR2 selective antagonist, a bicyclo[2.2.1]heptane containing N,N′-diarylsquaramide (compound 2e) was identified by introducing a bridge ring system into the N,N′-diarylsquaramide skeleton, and it exhibited good CXCR2 antagonistic activity (CXCR2IC50 = 48 nM) and good selectivity (CXCR1IC50/CXCR2IC50 = 60.4). Furthermore, an in vitro biological assay of compound 2e also demonstrated its good anti-cancer metastatic effect against the pancreatic cancer cell line CFPAC1. In addition, compound 2e showed an extremely high stability in simulated intestinal fluid (SIF) and simulated gastric fluid (SGF), as well as in rat and human plasma, but not in rat and human liver microsomes. In vivo pharmacokinetic studies in rats indicated that 2e has an excellent PK profile (10 mg kg−1 po, Cmax = 2863 ng mL−1, t1/2 = 2.58 h). Moreover, molecular docking was further implemented to propose the preponderant configuration of compound 2e, providing important and useful guidelines for further development.
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- 2018
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61. Heterogenization of homogeneous chiral polymers in metal–organic frameworks with enhanced catalytic performance for asymmetric catalysis
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Yong Yang, Xiaowu Dong, Jun Zuo, Xiao-Hua Li, Yongzhou Hu, Liang Gao, Xin-Yuan Liu, and Jinxin Che
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chemistry.chemical_classification ,Chiral auxiliary ,Materials science ,010405 organic chemistry ,Enantioselective synthesis ,Polymer ,010402 general chemistry ,01 natural sciences ,Pollution ,Combinatorial chemistry ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,Monomer ,chemistry ,Aldol reaction ,Environmental Chemistry ,Metal-organic framework ,In situ polymerization - Abstract
Metal–organic framework (MOF)-based asymmetric heterogeneous catalysts have attracted increasing attention; however, some challenges need to be addressed, such as the rigidity of chiral auxiliary groups within MOFs and the lack of a versatile methodology for the facile construction of chiral MOFs. To address this issue, in this study, a mechanistically distinct approach was developed for heterogenizing linear chiral catalysts in the MOF cavities, rather than the synthetic modification of MOFs. This strategy involves the facile in situ polymerization of pre-impregnated chiral monomers within MOFs, affording the hybrid composites featuring a locally homogeneous and globally heterogeneous structure. The introduced chiral catalytic sites would be flexible in the pores, offering an opportunity to exploit its cooperative effect with the nearby catalytic metal nodes. The advantages of the chiral polymer/MOF composites were clarified by their excellent diastereo- and enantioselectivities and recycling capacity for catalyzing the asymmetric Aldol reaction, which were superior to those of individually heterogeneous and homogeneous catalysts.
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- 2018
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62. Discovery of phenyl-linked symmetric small molecules as inhibitors of the programmed cell death-1/programmed cell death-ligand 1 interaction
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Yizhe Wu, Xinxin Jin, Wenhai Huang, Jian Gao, Shichun Zhong, Yu Zhang, Weihao Zhuang, Xiaowu Dong, Jinxin Che, Yu Guo, Zhichao Pan, and Sikang Chen
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Cell Survival ,Stereochemistry ,Programmed Cell Death 1 Receptor ,Cell ,Ligands ,B7-H1 Antigen ,Cell Line ,Small Molecule Libraries ,Structure-Activity Relationship ,chemistry.chemical_compound ,Immune system ,Drug Discovery ,medicine ,Humans ,Molecule ,Protein Interaction Maps ,Pharmacology ,Binding Sites ,Chemistry ,Aryl ,Organic Chemistry ,General Medicine ,Small molecule ,Immune checkpoint ,Molecular Docking Simulation ,medicine.anatomical_structure ,Docking (molecular) ,Drug Design ,Linker ,Protein Binding ,Signal Transduction - Abstract
Programmed cell death-1/programmed cell death ligand 1 (PD-1/PD-L1) is one of the most promising targets in the field of immune checkpoint blockade therapy. Beginning with our exploration of linkers and structure-activity relationship research, we found that the aromatic ring could replace the linker and aryl group to maintain the satisfactory activity of classic triaryl scaffold inhibitor. Based on previous studies, we designed and synthesized a series of C2-symmetric phenyl-linked compounds, and further tail optimization afforded the inhibitors, which displayed promising inhibitory activity against the PD-1/PD-L1 interaction with IC50 value at the single nanomolar range (C13-C15). Further cell-based PD-1/PD-L1 blockade bioassays indicated that these C2-symmetric molecules could significantly inhibit the PD-1/PD-L1 interaction at the cellular level and restore T cells' immune function at the safety concentrations. The discovery of these phenyl-linked symmetric small molecules showed the potential of simplified-linker and C2-symmetric strategy and provided a basis for developing symmetric small molecule inhibitors of PD-1/PD-L1 interaction. Moreover, C13 and C15 performed stable binding modes to PD-L1 dimeric after computational docking and dynamic simulation, which may serve as a good starting point for further development.
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- 2021
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63. Spatiotemporal trends of atmospheric dryness during 1980–2021 in Yunnan, China
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Haiqin Qin, Yingying Tan, Ting Shen, Doug Allen Schaefer, Huafang Chen, Shaoqi Zhou, Qiang Xu, Yingmo Zhu, Jinxin Cheng, Gaojuan Zhao, and Jianchu Xu
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atmospheric dryness ,VPD ,spatiotemporal trends ,Yunnan ,ecological land types ,Forestry ,SD1-669.5 ,Environmental sciences ,GE1-350 - Abstract
Understanding the spatiotemporal patterns and variations in vapor pressure deficit (VPD) is essential for effective water resource management in the face of climate change. VPD serves as a fundamental indicator of atmospheric dryness, directly impacting plant evapotranspiration rates, thereby affecting overall ecosystem functioning. In this study, VPD changes in five subregions and four ecological types of land in Yunnan from 1980 to 2021 were investigated using data from 108 meteorological stations. We found increasing trends in annual VPD that were larger during warmer spring and summer seasons. Among the subregions, the highland subtropical southern broadleaved evergreen forest ecoregion exhibited the largest drying trend (0.04 kPa / decade), while the subtropical (eastern) humid broadleaved evergreen forest ecoregion had the smallest drying trend (0.01 kPa / decade). Among the ecological barriers, the dry-hot valleys had significantly higher increases in VPD compared to other Yunnan regions. Increases in VPD from 1990s to 2000s in several regions of Yunnan exceeded atmospheric drying trends reported elsewhere. Additionally, we documented smaller VPD declines at higher elevations. Across different ecological land types, Shrubland exhibited the largest VPD trend (0.07 kPa / decade), while Forest displayed the smallest (0.03 kPa / decade). Decreased relative humidity through time explained 65% of the increase in VPD in Yunnan, while increasing temperatures accounted for 25%. These findings provide valuable insights into climatic dynamics of Yunnan, with implications for ecological, hydrological, and atmospheric studies.
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- 2024
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64. Recent advances in understanding the immune microenvironment in ovarian cancer
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Jinxin Chen, Lu Yang, Yiming Ma, and Ye Zhang
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ovarian cancer ,tumor environment ,immune cells ,immune checkpoint inhibitor ,immunotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The occurrence of ovarian cancer (OC) is a major factor in women’s mortality rates. Despite progress in medical treatments, like new drugs targeting homologous recombination deficiency, survival rates for OC patients are still not ideal. The tumor microenvironment (TME) includes cancer cells, fibroblasts linked to cancer (CAFs), immune-inflammatory cells, and the substances these cells secrete, along with non-cellular components in the extracellular matrix (ECM). First, the TME mainly plays a role in inhibiting tumor growth and protecting normal cell survival. As tumors progress, the TME gradually becomes a place to promote tumor cell progression. Immune cells in the TME have attracted much attention as targets for immunotherapy. Immune checkpoint inhibitor (ICI) therapy has the potential to regulate the TME, suppressing factors that facilitate tumor advancement, reactivating immune cells, managing tumor growth, and extending the survival of patients with advanced cancer. This review presents an outline of current studies on the distinct cellular elements within the OC TME, detailing their main functions and possible signaling pathways. Additionally, we examine immunotherapy rechallenge in OC, with a specific emphasis on the biological reasons behind resistance to ICIs.
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- 2024
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65. Bioconversion of Pinoresinol Diglucoside from Glucose Using Resting and Freeze-Dried Phomopsis sp. XP-8 Cells
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Yan Zhang, Muhammad Shahid Riaz Rajoka, Zhenhong Gao, Xiaoguang Xu, Junling Shi, Jing Zhu, Jinxin Che, and Zhiwei Zhang
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Ascomycota ,biology ,Cell growth ,ved/biology ,Bioconversion ,ved/biology.organism_classification_rank.species ,Cell ,Eucommia ulmoides ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,040401 food science ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,0404 agricultural biotechnology ,medicine.anatomical_structure ,L-Glucose ,chemistry ,Biotransformation ,medicine ,Food science ,Biotechnology ,Gram - Abstract
Phomopsis sp. XP-8 (an endophytic fungus) was previously found to produce pinoresinol diglucoside (PDG), a major antihypertensive compound of Tu-Chung (the bark of Eucommia ulmoides Oliv.), which is widely used in Chinese traditional medicines. In the present study, two bioconversion systems were developed for the production of PDG in Tris-HCl buffer containing glucose and Phomopsis sp. XP-8 cells (both resting and freeze-dried). When other factors remained unchanged, the bioconversion time, glucose concentration, cell ages, cell dosage, pH, temperature, and stirring speed influenced PDG production in a similar and decreasing manner after an initial increase with increasing levels for each factor. Considering the simultaneous change of various factors, the optimal conditions for PDG production were established as 70 g/l cells (8-day-old), 14 g/l glucose, 28°C, pH 7.5, and 180 rpm for systems employing resting cells, and 3.87 g/l cells, 14.67 g/l glucose, 28°C, pH 7.5, and 180 rpm for systems employing freeze-dried cells. The systems employing freeze-dried cells showed lower peak PDG production (110.28 μg/l), but at a much shorter time (12.65 h) compared with resting cells (23.62 mg/l, 91.5 h). The specific PDG production levels were 1.92 and 24 μg per gram cells per gram glucose for freeze-dried cells and resting cells, respectively. Both systems indicated a new and potentially efficient way to produce PDG independent of microbial cell growth.
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- 2017
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66. Targeting CXCR1/2: The medicinal potential as cancer immunotherapy agents, antagonists research highlights and challenges ahead
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Binhui Chen, Jinxin Che, Xiaowu Dong, and Rui Song
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medicine.medical_treatment ,01 natural sciences ,Receptors, Interleukin-8B ,Receptors, Interleukin-8A ,03 medical and health sciences ,Chemokine receptor ,Structure-Activity Relationship ,Immune system ,Cancer immunotherapy ,Neoplasms ,Drug Discovery ,medicine ,Animals ,Humans ,Immunologic Factors ,CXC chemokine receptors ,030304 developmental biology ,Pharmacology ,0303 health sciences ,Tumor microenvironment ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Cancer ,General Medicine ,Immunotherapy ,medicine.disease ,0104 chemical sciences ,Cancer research ,Myeloid-derived Suppressor Cell - Abstract
Immune suppression in the tumor microenvironment (TME) is an intractable issue in anti-cancer immunotherapy. The chemokine receptors CXCR1 and CXCR2 recruit immune suppressive cells such as the myeloid derived suppressor cells (MDSCs) to the TME. Therefore, CXCR1/2 antagonists have aroused pharmaceutical interest in recent years. In this review, the medicinal chemistry of CXCR1/2 antagonists and their relevance in cancer immunotherapy have been summarized. The development of the drug candidates, along with their design rationale, clinical status and current challenges have also been discussed.
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- 2019
67. Inhibitory effects of glutaraldehyde on Geotrichum citri-aurantii and its possible mechanism
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Xingfeng Shao, Nengguo Tao, Yanqin Yang, Lu Li, Jinxin Che, and Qiuli OuYang
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Citrus ,Membrane permeability ,Geotrichum ,Calcofluor-white ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,chemistry.chemical_compound ,stomatognathic system ,Propidium iodide ,Food science ,Mycelium ,030304 developmental biology ,Plant Diseases ,chemistry.chemical_classification ,0303 health sciences ,Reactive oxygen species ,biology ,030306 microbiology ,food and beverages ,General Medicine ,biology.organism_classification ,Staining ,Fungicides, Industrial ,chemistry ,Glutaral ,Glutaraldehyde ,Biotechnology - Abstract
AIMS This study investigated the inhibitory effect of glutaraldehyde (GA) on sour rot in citrus fruit and the underlying antifungal mechanism on mycelial growth of the causative pathogen Geotrichum citri-aurantii. METHODS AND RESULTS Glutaraldehyde exhibited a strong inhibitory effect on G. citri-aurantii, with a minimum inhibitory and fungicidal concentration (MFC) of 1·00 µl ml-1 . In addition, in vivo application of GA (1 × MFC and 5 × MFC) reduced the disease incidence of sour rot in citrus fruit by 60 and 80% respectively. Scanning electron microscopy results revealed that the morphology of G. citri-aurantii mycelia was greatly altered by GA treatment. Propidium iodide and Calcofluor White Staining revealed that the membrane permeability, rather than the cell wall integrity, of G. citri-aurantii mycelia was severely disrupted after the addition of GA. Massive accumulation of malonaldehyde and reactive oxygen species as well as an increase in lipoxygenase activity were observed. CONCLUSION These results indicate that GA may inhibit the mycelia growth of G. citri-aurantii through a membrane damage mechanism induced by membrane peroxidation. SIGNIFICANCE AND IMPACT OF THE STUDY Glutaraldehyde is expected to be a novel fungicide for controlling sour rot in citrus fruit.
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- 2019
68. MOESM1 of Genomic sequencing, genome-scale metabolic network reconstruction, and in silico flux analysis of the grape endophytic fungus Alternaria sp. MG1
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Lu, Yao, Ye, Chao, Jinxin Che, Xiaoguang Xu, Dongyan Shao, Chunmei Jiang, Yanlin Liu, and Junling Shi
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Additional file 1: Figure S1. UPLC-QTOF-MS analysis of pterostilbene accumulation in the culture of Alternaria sp. MG1. Extracted ion chromatogram of a sample (A) and a pterostilbene standard (B). Mass spectrum of a sample (C) and pterostilbene standard (D). The suspected pterostilbene detected in the sample (2.16 min) and pterostilbene standard (2.16 min) showed a similar retention time, molecular ion of m/z = 257.1, verifying the production of pterostilbene. Figure S2. Growth of Alternaria sp. MG1 for control (A) and cerulenin treatment (B) after cultured for 7 days on potato dextrose agar (PDA) plate and the rate of colony expanding changes with cultivation time (C). Table S1. Identified ATP-binding cassette (ABC) transport proteins in Alternaria sp. MG1. Table S2. Potential targets identified by MOMA which could enhance resveratrol production.
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- 2019
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69. Genomic sequencing, genome-scale metabolic network reconstruction, and in silico flux analysis of the grape endophytic fungus Alternaria sp. MG1
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Xiaoguang Xu, Yanlin Liu, Dongyan Shao, Chunmei Jiang, Yao Lu, Chao Ye, Junling Shi, and Jinxin Che
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0106 biological sciences ,Propanols ,In silico ,lcsh:QR1-502 ,Metabolic network ,Bioengineering ,Computational biology ,Resveratrol ,01 natural sciences ,Applied Microbiology and Biotechnology ,lcsh:Microbiology ,Gas Chromatography-Mass Spectrometry ,Mass Spectrometry ,03 medical and health sciences ,chemistry.chemical_compound ,010608 biotechnology ,Genome-scale metabolic model ,Stilbenes ,Vitis ,Biomass ,Chromatography, High Pressure Liquid ,030304 developmental biology ,0303 health sciences ,biology ,Whole Genome Sequencing ,Research ,Secondary metabolites ,food and beverages ,Alternaria ,Genome project ,biology.organism_classification ,Elicitor ,Metabolic pathway ,chemistry ,Alternaria sp. MG1 ,Constraints-based flux analysis ,Genome, Fungal ,Flux (metabolism) ,Metabolic Networks and Pathways ,Biotechnology - Abstract
Background Alternaria sp. MG1, an endophytic fungus isolated from grape, is a native producer of resveratrol, which has important application potential. However, the metabolic characteristics and physiological behavior of MG1 still remains mostly unraveled. In addition, the resveratrol production of the strain is low. Thus, the whole-genome sequencing is highly required for elucidating the resveratrol biosynthesis pathway. Furthermore, the metabolic network model of MG1 was constructed to provide a computational guided approach for improving the yield of resveratrol. Results Firstly, a draft genomic sequence of MG1 was generated with a size of 34.7 Mbp and a GC content of 50.96%. Genome annotation indicated that MG1 possessed complete biosynthesis pathways for stilbenoids, flavonoids, and lignins. Eight secondary metabolites involved in these pathways were detected by GC–MS analysis, confirming the metabolic diversity of MG1. Furthermore, the first genome-scale metabolic network of Alternaria sp. MG1 (named iYL1539) was reconstructed, accounting for 1539 genes, 2231 metabolites, and 2255 reactions. The model was validated qualitatively and quantitatively by comparing the in silico simulation with experimental data, and the results showed a high consistency. In iYL1539, 56 genes were identified as growth essential in rich medium. According to constraint-based analysis, the importance of cofactors for the resveratrol biosynthesis was successfully demonstrated. Ethanol addition was predicted in silico to be an effective method to improve resveratrol production by strengthening acetyl-CoA synthesis and pentose phosphate pathway, and was verified experimentally with a 26.31% increase of resveratrol. Finally, 6 genes were identified as potential targets for resveratrol over-production by the recently developed methodology. The target-genes were validated using salicylic acid as elicitor, leading to an increase of resveratrol yield by 33.32% and the expression of gene 4CL and CHS by 1.8- and 1.6-fold, respectively. Conclusions This study details the diverse capability and key genes of Alternaria sp. MG1 to produce multiple secondary metabolites. The first model of the species Alternaria was constructed, providing an overall understanding of the physiological behavior and metabolic characteristics of MG1. The model is a highly useful tool for enhancing productivity by rational design of the metabolic pathway for resveratrol and other secondary metabolites. Electronic supplementary material The online version of this article (10.1186/s12934-019-1063-7) contains supplementary material, which is available to authorized users.
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- 2019
70. Origami-Inspired Vacuum-Actuated Foldable Actuator Enabled Biomimetic Worm-like Soft Crawling Robot
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Qiping Xu, Kehang Zhang, Chenhang Ying, Huiyu Xie, Jinxin Chen, and Shiju E
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origami-inspired ,vacuum-actuated ,biomimetic worm-like ,soft crawling robot ,asymmetric structural design ,multimodal locomotion ,Technology - Abstract
The development of a soft crawling robot (SCR) capable of quick folding and recovery has important application value in the field of biomimetic engineering. This article proposes an origami-inspired vacuum-actuated foldable soft crawling robot (OVFSCR), which is composed of entirely soft foldable mirrored origami actuators with a Kresling crease pattern, and possesses capabilities of realizing multimodal locomotion incorporating crawling, climbing, and turning movements. The OVFSCR is characterized by producing periodically foldable and restorable body deformation, and its asymmetric structural design of low front and high rear hexahedral feet creates a friction difference between the two feet and contact surface to enable unidirectional movement. Combining an actuation control sequence with an asymmetrical structural design, the body deformation and feet in contact with ground can be coordinated to realize quick continuous forward crawling locomotion. Furthermore, an efficient dynamic model is developed to characterize the OVFSCR’s motion capability. The robot demonstrates multifunctional characteristics, including crawling on a flat surface at an average speed of 11.9 mm/s, climbing a slope of 3°, carrying a certain payload, navigating inside straight and curved round tubes, removing obstacles, and traversing different media. It is revealed that the OVFSCR can imitate contractile deformation and crawling mode exhibited by soft biological worms. Our study contributes to paving avenues for practical applications in adaptive navigation, exploration, and inspection of soft robots in some uncharted territory.
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- 2024
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71. Detection of Feeding Behavior in Lactating Sows Based on Improved You Only Look Once v5s and Image Segmentation
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Luo Liu, Shanpeng Xu, Jinxin Chen, Haotian Wang, Xiang Zheng, Mingxia Shen, and Longshen Liu
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lactating sows ,feeding behavior ,improved YOLO v5s ,image processing ,Agriculture (General) ,S1-972 - Abstract
The production management of lactating sows is a crucial aspect of pig farm operations, as their health directly impacts the farm’s production efficiency. The feeding behavior of lactating sows can reflect their health and welfare status, and monitoring this behavior is essential for precise feeding and management. To address the issues of time-consuming and labor-intensive manual inspection of lactating sows’ feeding behavior and the reliance on breeders’ experience, we propose a method based on the improved YOLO (You Only Look Once) v5s algorithm and image segmentation for detecting the feeding behavior of lactating sows. Based on the YOLOv5s algorithm, the SE (Squeeze-and-Excitation) attention module was added to enhance the algorithm’s performance and reduce the probability of incorrect detection. Additionally, the loss function was replaced by WIoU (Weighted Intersection over Union) to accelerate the model’s convergence speed and improve detection accuracy. The improved YOLOv5s-C3SE-WIoU model is designed to recognize pre-feeding postures and feed trough conditions by detecting images of lactating sows. Compared to the original YOLOv5s, the improved model achieves an 8.9% increase in mAP@0.5 and a 4.7% increase in mAP@0.5 to 0.95. This improvement satisfies the requirements for excellent detection performance, making it suitable for deployment in large-scale pig farms. From the model detection results, the trough remnant image within the detection rectangle was extracted. This image was further processed using image processing techniques to achieve trough remnant image segmentation and infer the remnant amount. Based on the detection model and residue inference method, video data of lactating sows’ feeding behavior were processed to derive the relationship between feeding behavior, standing time, and residue amount. Using a standing duration of 2 s and a leftover-feed proportion threshold of 2% achieves the highest accuracy, enabling the identification of abnormal feeding behavior. We analyzed the pre-feeding postures and residual feed amounts of abnormal and normal groups of lactating sows. Our findings indicated that standing time was significantly lower and residual feed amount was higher in the abnormal groups compared to the normal groups. By combining standing time and residual feed amount information, accurate detection of the feeding status of lactating sows can be realized. This approach facilitates the accurate detection of abnormal feeding behaviors of lactating sows in large-scale pig farm environments.
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- 2024
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72. A New Approach to Produce Resveratrol by Enzymatic Bioconversion
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Jinxin Che, Junling Shi, Yan Zhang, and Zhenhong Gao
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0106 biological sciences ,0301 basic medicine ,Immobilized enzyme ,Alginates ,Bioconversion ,Coenzyme A ,Resveratrol ,01 natural sciences ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,chemistry.chemical_compound ,Glucuronic Acid ,Biosynthesis ,010608 biotechnology ,Stilbenes ,Vitis ,Response surface methodology ,Biotransformation ,chemistry.chemical_classification ,Hexuronic Acids ,Alternaria ,food and beverages ,Substrate (chemistry) ,General Medicine ,Hydrogen-Ion Concentration ,Enzymes, Immobilized ,Glucose ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,Biotechnology - Abstract
An enzymatic reaction system was developed and optimized for bioconversion of resveratrol from glucose. Liquid enzyme extracts were prepared from Alternaria sp. MG1, an endophytic fungus from grape, and used directly or after immobilization with sodium alginate. When the enzyme solution was used, efficient production of resveratrol was found within 120 min in a manner that was pH-, reaction time-, enzyme amount-, substrate type-, and substrate concentration-dependent. After the optimization experiments using the response surface methodology, the highest value of resveratrol production (224.40 µg/l) was found under the conditions of pH 6.84, 0.35 g/l glucose, 0.02 mg/l coenzyme A, and 0.02 mg/l ATP. Immobilized enzyme extracts could keep high production of resveratrol during recycling use for two to five times. The developed system indicated a potential approach to resveratrol biosynthesis independent of plants and fungal cell growth, and provided a possible way to produce resveratrol within 2 h, the shortest period needed for biosynthesis of resveratrol so far.
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- 2016
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73. Comparison of pinoresinol diglucoside production byPhomopsissp. XP-8 in different media and the characterisation and product profiles of the cultivation in mung bean
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Junling Shi, Dongyan Shao, Yan Zhang, Zhenhong Gao, Jinxin Che, and Yanlin Liu
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,Nutrition and Dietetics ,food.ingredient ,Phenylalanine ,Polysaccharide ,01 natural sciences ,Cinnamic acid ,Ferulic acid ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,food ,chemistry ,Pinoresinol ,Botany ,Caffeic acid ,Agar ,Fermentation ,Food science ,Agronomy and Crop Science ,010606 plant biology & botany ,Food Science ,Biotechnology - Abstract
Background Phomopsis sp. XP-8 is an endophytic fungus with the ability to produce pinoresinol diglucoside (PDG) in vitro and thus has potential application in biosynthesis of PDG independent of plants. In order to enhance the production of PDG, 18 different natural materials were tested in solid-state cultivation of Phomopsis sp. XP-8. Results Most of the tested natural materials promoted the production of PDG. A supplement derived from mung beans produced the highest PDG yield and better fungal growth than the other materials. Also, pinoresinol monoglucoside, pinoresinol and other substrates (phenylalanine, p-coumaric acid, cinnamic acid, caffeic acid, and ferulic acid) were obtained after fermentation on mung beans. Furthermore, PDG production was much higher when mung beans were incorporated into solid state agar versus a liquid medium. The highest pinoresinol diglucoside production (72.1 mg kg(-1) in fresh culture) was obtained in 9 days using a solid state culture of Phomopsis sp. XP-8 on a mung bean grain medium containing 100 g kg(-1) glucose. Mung bean water-soluble polysaccharide was identified as a major promoter of PDG production by Phomopsis sp. XP-8. Conclusion Mung bean, especially its water-soluble polysaccharide fraction, was an efficient natural material to promote PDG production by Phomopsis sp. XP-8. © 2015 Society of Chemical Industry.
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- 2016
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74. Metabolomics analysis reveals that myrcene stimulates the spore germination of Penicillium digitatum via the upregulation of central carbon and energy metabolism
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Lu Li, Yalan Wu, Jinxin Che, Nengguo Tao, and Yue Chen
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Penicillium digitatum ,biology ,Chemistry ,Horticulture ,Pentose phosphate pathway ,biology.organism_classification ,Terpene ,chemistry.chemical_compound ,Myrcene ,Extracellular ,Spore germination ,Food science ,Energy charge ,Agronomy and Crop Science ,Mycelium ,Food Science - Abstract
Tremendous economic losses in the citrus industry are caused by infestations of Penicillium digitatum. Previous research has shown that the terpene myrcene in citrus essential oils could stimulate the spore germination and mycelial growth of P. digitatum. However, the underlying mechanism is poorly known. Here, how myrcene induces the spore germination of P. digitatum was elucidated. The addition of myrcene significantly promoted the spore germination of P. digitatum and green mold in citrus fruit. As the incubation time increased, the intracellular and extracellular myrcene contents both significantly decreased in myrcene-treated samples, and no downstream products were detected through a Gas Chromatography-Mass Spectrometer. Metabolomics analysis revealed that the contents of metabolites involved in central carbon metabolism, such as glycolysis, pentose phosphate pathway, and citrate cycle, were significantly affected after the addition of myrcene. The adenosine triphosphate content and the intracellular energy charge were also drastically increased. Overall, our results suggest that the ability of myrcene to stimulate the spore germination of P. digitatum might be mediated by the upregulation of central carbon and energy metabolism.
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- 2020
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75. Identification of new IDH2 R140Q inhibitors by discriminatory analysis‐based molecular docking and biological evaluation
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Jinxin Che, Xiaowu Dong, Xianmin Wu, Zhijian Shen, Xiaoyun Chen, Jian Gao, and Huazhou Ying
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Virtual screening ,010405 organic chemistry ,Chemistry ,Kinase ,Regulator ,Pharmaceutical Science ,Computational biology ,Nuclear factor κb ,01 natural sciences ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Binding conformation ,Drug Discovery ,Signal transduction ,IC50 ,Biological evaluation - Abstract
NF-κB inducing kinase (NIK) is a key regulator in the noncanonical nuclear factor κB cells (NF-κB) signaling pathway. Dysregulation of NIK is often related with autoimmune disorders and malignancies. However, the number of reported NIK inhibitors is scarce. Discriminatory analysis-based molecular docking was used to examine the accuracy of the binding conformation and to estimate the binding affinity, leading to the identification of several new NIK inhibitors with moderate IC50 (ranging from 48.9 to 103.4 μM). Among them, compound 5, the most potent one (IC50 48.9 ± 6.9 μM), also showed moderate antiproliferation activity against cancer SW1990 cells, with an IC50 value of 20.1 ± 6.0 μM. Further dynamic simulations were performed to provide more in-depth details on the binding conformation of compound 5 and the NIK protein, providing some structural clues for further optimization of compound 5 as a novel NIK inhibitor.
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- 2020
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76. Parameters of pharmacophore hypothesis generation;Parameters of validation and screening;Chemistry;NMR Spectrum of compounds from Ligand-based pharmacophore model for the discovery of novel CXCR2 antagonists as anti-cancer metastatic agents
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Jinxin Che, Zhilong Wang, Haichao Sheng, Huang, Feng, Xiaowu Dong, Youhong Hu, Xie, Xin, and Yongzhou Hu
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Metastatic cancer is considered a fatal progression of cancer worldwide. It has been shown that a key player in this scenario is the CXC chemokine receptor 2 (CXCR2). To identify novel CXCR2 antagonists, a pharmacophore model was built with HipHop program by screening a database containing compounds which were designed based on the known structure–activity relationship (SAR) of the diarylurea series CXCR2 antagonists. Compound 1a bearing the novel skeleton was selected from database screening and subjected to the in vitro biological test which resulted in a moderate CXCR2 antagonist potential. With further modification and exploration of SAR, compound 1e demonstrated improved CXCR2 antagonist activity with an IC50 value of 14.8 μM. Furthermore, wound healing assay using the NCI-H1299 cell line indicated that 1e showed an excellent anti-cancer metastatic effect (72% inhibition in cell migration at 50 μg ml−1).
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- 2018
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77. Production of pinoresinol diglucoside, pinoresinol monoglucoside, and pinoresinol by Phomopsis sp. XP-8 using mung bean and its major components
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Ruiming Yangwu, Junling Shi, Zhenhong Gao, Jinxin Che, Yanlin Liu, Yan Zhang, and Huanshi Jiang
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Starch ,Phenylalanine ,Polysaccharide ,Applied Microbiology and Biotechnology ,Lignans ,Mass Spectrometry ,Cinnamic acid ,chemistry.chemical_compound ,Ascomycota ,Monosaccharide ,Glycosides ,Food science ,Furans ,Biotransformation ,Chromatography, High Pressure Liquid ,Plant Proteins ,chemistry.chemical_classification ,Plant Extracts ,food and beverages ,Fabaceae ,General Medicine ,chemistry ,Biochemistry ,Pinoresinol ,Galactose ,Fermentation ,Biotechnology - Abstract
Phomopsis sp. XP-8 is an endophytic fungus that has the ability to produce pinoresinol diglucoside (PDG) in vitro and thus has potential application for the biosynthesis of PDG independent of plants. When cultivated in mung bean medium, PDG production was significantly improved and pinoresinol monoglucoside (PMG) and pinoresinol (Pin) were also found in the culture medium. In this experiment, starch, protein, and polysaccharides were isolated from mung beans and separately used as the sole substrate in order to explore the mechanism of fermentation and identify the major substrates that attributed to the biotransformation of PDG, PMG, and Pin. The production of PDG, PMG, and Pin was monitored using high-performance liquid chromatography (HPLC) and confirmed using HPLC-MS. Activities of related enzymes, including phenylalanine ammonia-lyase (PAL), trans-cinnamate 4-hydroxylase (C4H), and 4-coumarate-CoA ligase (4CL) were analyzed and tracked during the cultivation. The reaction system contained the compounds isolated from mung bean in the designed amount. Accumulation of phenylalanine, cinnamic acid, p-coumaric acid, PDG, PMG, and Pin and the activities of PAL, C4H, and 4CL were measured during the bioconversion. PMG was found only when mung bean polysaccharide was analyzed, while production of PDG and Pin were found when both polysaccharide and starch were analyzed. After examining the monosaccharide composition of the mung bean polysaccharide and the effect of the different monosaccharides had on the production of PMG, PDG, and Pin, galactose in mung bean polysaccharide proved to be the major factor that stimulates the production of PMG.
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- 2015
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78. A prediction model of dust accumulation on photovoltaic modules considering rainfall washing
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Shuangbin Ma, FeiTing Huang, Jinxin Chen, Weiyun Tong, Lin Wang, and Qiping Xu
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distributed power generation ,particle swarm optimisation ,solar power ,support vector machines ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Abstract The power generation of the photovoltaic plant is related to the cleanliness of the photovoltaic modules. The accumulation of natural dust is the main source of pollution, which is affected by human activities and meteorological factors such as temperature, humidity, wind speed, and rainfall concentration in the current region. On the basis of particle swarm optimization (PSO) and the least‐squares support vector machine (LSSVM), the density of dust on photovoltaic modules was estimated. The authors proposed that the inertia weight decreased as a concave function to improve the efficiency of optimization and let the two positive constants change dynamically to improve convergence performance. The dust accumulation prediction model was established considering natural rainfall and the authors obtained the attenuation rate of the photovoltaic power output. Finally, the experiments in Hangzhou showed that the model can predict the density of accumulated dust quickly, which provides a theory for predicting PV power generation and managing the cleaning frequency.
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- 2023
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79. The transcription factor Rpn4 activates its own transcription and induces efflux pump expression to confer fluconazole resistance in Candida auris
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Eve W. L. Chow, Yabing Song, Jinxin Chen, Xiaoli Xu, Jianbin Wang, Kun Chen, Jiaxin Gao, and Yue Wang
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Candida auris ,antifungal resistance ,Rpn4 transcription factor ,efflux pumps ,transposon-mediated mutagenesis ,Microbiology ,QR1-502 - Abstract
ABSTRACTThe emergence and nosocomial spread of the multidrug-resistant Candida auris pose a severe public health threat. Most C. auris clinical isolates are fluconazole resistant. In this study, we conduct transposon-mediated screens to profile genes whose inactivation causes fluconazole resistance in C. auris. We discover that mutation of genes encoding the Ubr2/Mub1 ubiquitin-ligase complex results in high fluconazole resistance by stabilizing the transcription activator, Rpn4. Global transcriptomic analysis, quantitative PCR, and combinatorial gene deletion reveal that Rpn4 causes fluconazole resistance by upregulating four efflux pump genes, SNQ21, SNQ22, MDR1, and CDR1, increasing efflux activity of the cell. Rpn4 autoactivates its own expression by binding to a PACE element in its promoter, forming a positive autoregulatory loop. Rpn4 also promotes CDR1 expression by binding to a PACE element in the CDR1 promoter. Furthermore, using the published genome sequence data of 304 clinical isolates, we identified a UBR2 A316T mutation in isolates from clades I and III. Although complementation of the ubr2Δ mutant with the UBR2A316T allele resulted in increased susceptibility to fluconazole, the UBR2A316T mutant was still more resistant to fluconazole compared to wild type, suggesting that acquisition of the mutation is sufficient to confer an increase in fluconazole resistance. In conclusion, this study identifies Rpn4 as a critical transcription factor that regulates fluconazole resistance via the Rpn4-efflux pump axis in C. auris.IMPORTANCECandida auris is a recently emerged pathogenic fungus of grave concern globally due to its resistance to conventional antifungals. This study takes a whole-genome approach to explore how C. auris overcomes growth inhibition imposed by the common antifungal drug fluconazole. We focused on gene disruptions caused by a “jumping genetic element” called transposon, leading to fluconazole resistance. We identified mutations in two genes, each encoding a component of the Ubr2/Mub1 ubiquitin-ligase complex, which marks the transcription regulator Rpn4 for degradation. When either protein is absent, stable Rpn4 accumulates in the cell. We found that Rpn4 activates the expression of itself as well as the main drug efflux pump gene CDR1 by binding to a PACE element in the promoter. Furthermore, we identified an amino acid change in Ubr2 in many resistant clinical isolates, contributing to Rpn4 stabilization and increased fluconazole resistance.
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- 2023
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80. Changes of the gut microbiota composition and short chain fatty acid in patients with atrial fibrillation
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Lingzhi Chen, Jinxin Chen, Yuheng Huang, Yanran Wu, Junfeng Li, Weicheng Ni, Yucheng Lu, Zhenzhen Li, Chuhuan Zhao, Shuting Kong, Hao Zhou, and Xiang Qu
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Gut microbiota ,Atrial fibrillation ,Short chain fatty acid ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background With the establishment of the cardiac-gut axis concept, increasing evidence has suggested the involvement and important regulatory role of the gut microbiota (GM) and short chain fatty acid (SCFA) in cardiovascular diseases. However, the relationship between GM and atrial fibrillation (AF) is still poorly understood. Objectives The aim of this study was to investigate whether there were differences in GM and SCFA between AF patients and healthy controls. Methods In this study, we enrolled 30 hospitalized patients with AF and 30 matched patients with sinus rhythm (SR). GM species in fecal samples were evaluated through amplicon sequencing targeting the 16Sribosomal RNA gene. The feces SCFAs were describe step by step the quantitative analysis using gas chromatography-mass spectrometry (GC-MS). GM species richness, diversity, differential abundance of individual taxa between AF and SR were analyzed. Results AF patients showed decreased species richness and α-diversity compared to SR patients, but there was no statistical difference. The phylogenetic diversity was significant decreased in AF group. The β-diversity indexes revealed significant differences in GM community structure between the AF group and the SR group. After investigated the individual taxa, AF group showed altered relative abundance in several taxa compared to the SR group. linear discriminant analysis (LDA) effect size (LEfSe) analysis revealed, a significant decrease in Bifidobacterium and a greater abundance of Lactobacillus, Fusobacterium, Haemophilus in AF group compared with the SR group. The abundance of haemophilus was negative correlated with isovaleric acid and isobutyric acid. Conclusions In AF patients, the GM phylogenetic diversity and β-diversity decreased, the relative abundance altered in several taxa and the bacterial community structure changed as well as the SCFA level. GM and SCFA dysbiosis might play a crucial part in the occurrence and development of AF.
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- 2023
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81. Corrigendum: Interdecadal variation of precipitation over Yunnan, China in summer and its possible causes
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Zeyu Dong, Shu Gui, Ruowen Yang, Jinxin Cheng, Huan Yang, and Ji Ma
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precipitation ,interdecadal variation ,SST configuration ,Gill-Matsuno response ,Bay of Bengal ,Western Pacific warm pool ,Environmental sciences ,GE1-350 - Published
- 2023
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82. Bioconversion of Pinoresinol Diglucoside from Glucose Using Resting and Freeze-Dried
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Zhenhong, Gao, Muhammad, Riaz Rajoka, Jing, Zhu, Zhiwei, Zhang, Yan, Zhang, Jinxin, Che, Xiaoguang, Xu, and Junling, Shi
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Freeze Drying ,Glucose ,Ascomycota ,Temperature ,Hydrogen-Ion Concentration ,Antihypertensive Agents ,Biotransformation ,Lignans - Published
- 2017
83. Solar Cell Surface Defect Detection Based on Optimized YOLOv5
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Sha Lu, Kaixing Wu, and Jinxin Chen
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YOLOv5 ,solar cell ,defect detection ,coordinate attention ,decoupled detection head ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Traditional vision methods for solar cell defect detection have problems such as low accuracy and few types of detection, so this paper proposes an optimized YOLOv5 model for more accurate and comprehensive identification of defects in solar cells. The model firstly integrates five data enhancement methods, namely Mosaic, Mixup, hsv transform, scale transform and flip, to expand the existing data set to improve the feature training accuracy and enhance the robustness of the model; secondly, CA attention mechanism is introduced to improve the feature extraction ability of the model; to address the problems of different target defect classification and localization concerns, the detection head in the original model is replaced with a decoupling head, which significantly improve the detection accuracy of the model without affecting the convergence speed of the model. The results show that the optimized model achieves an mAP of 96.1% on the publicly available dichotomous ELPV dataset, and can identify and locate a variety of common defects in the PVEL-AD dataset, while the mAP can reach 87.4%, an improvement of 10.38% compared with the original YOLOv5 model, which enables the model to perform more accurately while ensuring the real-time requirement of solar cell surface defects detection task.
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- 2023
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84. Integrating docking scores, interaction profiles and molecular descriptors to improve the accuracy of molecular docking: Toward the discovery of novel Akt1 inhibitors
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Daqiang Li, Yongzhou Hu, Tao Liu, Wenhu Zhan, Liangren Zhang, Bo Yang, Jinxin Che, and Xiaowu Dong
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Pharmacology ,Quantitative structure–activity relationship ,Chemistry ,Organic Chemistry ,Quantitative Structure-Activity Relationship ,General Medicine ,Computational biology ,Combinatorial chemistry ,Molecular Docking Simulation ,Pyrimidines ,Docking (molecular) ,Cell Line, Tumor ,Neoplasms ,Molecular descriptor ,Drug Discovery ,Humans ,Proto-Oncogene Proteins c-akt ,Nonlinear regression ,Cell Proliferation - Abstract
A set of forty-seven Akt1 inhibitors was used for the development of molecular docking based QSAR model by using nonlinear regression. The integration of docking scores, key interaction profiles and molecular descriptors remarkably improved the accuracy of the QSAR models, providing reasonable statistical parameters (Rtrain2 = 0.948, Rtest2 = 0.907 and Qcv2 = 0.794). The established MD-SVR model based structural modification of new 4-amino-pyrimidine derivatives was further performed, and six compounds 56a,b and 60a–d with good prediction activities were synthesized and biologically evaluated. All of these compounds exhibited promising Akt1 inhibitory and antiproliferative activities, suggesting the reliability and good application value of the established MD-SVR model in the development of Akt1 inhibitors.
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- 2014
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85. Isolation of antofine from Cynanchum atratum BUNGE (Asclepiadaceae) and its antifungal activity against Penicillium digitatum
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Qiuli OuYang, Nengguo Tao, Jinyin Chen, Jinxin Che, Chunpeng Wan, Lu Li, and Zhitong Xin
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0106 biological sciences ,Penicillium digitatum ,Ergosterol ,biology ,Chemistry ,Alkaloid ,04 agricultural and veterinary sciences ,Horticulture ,biology.organism_classification ,01 natural sciences ,040501 horticulture ,chemistry.chemical_compound ,Minimum inhibitory concentration ,In vivo ,Postharvest ,Food science ,0405 other agricultural sciences ,Agronomy and Crop Science ,Adenosine triphosphate ,Intracellular ,010606 plant biology & botany ,Food Science - Abstract
The present study describes the isolation of the alkaloid “antofine” from Cynanchum atratum BUNGE as well as its anti-fungal potential against the citrus postharvest pathogen Penicillium digitatum. Antofine, which was extracted using an ultrasonic-assisted method and identified by 1H, 13C-NMR, and LC/MS analysis, showed strong antifungal activity against P. digitatum, with an observed minimum inhibitory concentration (MIC) and a minimum fungicidal concentration (MFC) of 1.56 × 10−3 and 1.25 × 10-2 g L-1, respectively. In vivo assays showed that antofine could significantly reduce the incidence of green mold. Furthermore, the total lipid and ergosterol contents of P. digitatum decreased after antofine treatment, indicating the disruption of membrane integrity. In addition, antofine caused a significant reduction of the intracellular adenosine triphosphate (ATP) content during the entire exposure period. These results suggest that the antifungal activity of antofine against P. digitatum can be attributed to the disruption of the cell membrane integrity and energy metabolism.
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- 2019
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86. Egfr signaling promotes juvenile hormone biosynthesis in the German cockroach
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Zhaoxin Li, Caisheng Zhou, Yumei Chen, Wentao Ma, Yunlong Cheng, Jinxin Chen, Yu Bai, Wei Luo, Na Li, Erxia Du, and Sheng Li
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Egfr signaling ,Pnt ,JH ,JHAMT ,Transcriptional regulation ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background In insects, an interplay between the activities of distinct hormones, such as juvenile hormone (JH) and 20-hydroxyecdysone (20E), regulates the progression through numerous life history hallmarks. As a crucial endocrine factor, JH is mainly synthesized in the corpora allata (CA) to regulate multiple physiological and developmental processes, including molting, metamorphosis, and reproduction. During the last century, significant progress has been achieved in elucidating the JH signal transduction pathway, while less progress has been made in dissecting the regulatory mechanism of JH biosynthesis. Previous work has shown that receptor tyrosine kinase (RTK) signaling regulates hormone biosynthesis in both insects and mammals. Here, we performed a systematic RNA interference (RNAi) screening to identify RTKs involved in regulating JH biosynthesis in the CA of adult Blattella germanica females. Results We found that the epidermal growth factor receptor (Egfr) is required for promoting JH biosynthesis in the CA of adult females. The Egf ligands Vein and Spitz activate Egfr, followed by Ras/Raf/ERK signaling, and finally activation of the downstream transcription factor Pointed (Pnt). Importantly, Pnt induces the transcriptional expression of two key enzyme-encoding genes in the JH biosynthesis pathway: juvenile hormone acid methyltransferase (JHAMT) and methyl farnesoate epoxidase (CYP15A1). Dual-luciferase reporter assay shows that Pnt is able to activate a promoter region of Jhamt. In addition, electrophoretic mobility shift assay confirms that Pnt directly binds to the − 941~ − 886 nt region of the Jhamt promoter. Conclusions This study reveals the detailed molecular mechanism of Egfr signaling in promoting JH biosynthesis in the German cockroach, shedding light on the intricate regulation of JH biosynthesis during insect development.
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- 2022
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87. Interdecadal variation of precipitation over Yunnan, China in summer and its possible causes
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Zeyu Dong, Shu Gui, Ruowen Yang, Jinxin Cheng, Huan Yang, and Ji Ma
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precipitation ,interdecadal variation ,SST configuration ,Gill-Matsuno response ,Bay of Bengal ,western Pacific warm pool ,Environmental sciences ,GE1-350 - Abstract
In recent decades, severe drought conditions have become increasingly frequent in Yunnan, Southwest China. The extreme drought events cause huge losses to agricultural economy, ecological security and human health. To uncover the reasons behind the worsening drought conditions, this study investigates the interdecadal variability (IDV) of summer precipitation in Yunnan during 1961–2019 and its association with the Indo-Pacific Sea surface temperature (SST) configuration based on gauge observation and reanalysis data. The dominant mode of summer precipitation IDV in Yunnan shows a uniform pattern characterizing the alternations of flood and drought. Specifically, a relatively wet period persists from the early 1990s to the early 2000s, followed by a relatively dry period from the early 2000s to the late 2010s. The IDV of precipitation is consistent with the IDV of the column-integrated water vapor flux divergence, where the wind anomalies play a major role in modulating the moisture supply. The main SST forcings of the IDV of precipitation include the sea surface temperature anomalies (SSTAs) over the Bay of Bengal (BOB), the Western Pacific Warm Pool (WPWP), and the western North Pacific (WNP). The negative SSTAs over the BOB and the WPWP trigger a Gill-Matsuno-type response that enhances the cyclonic curvature over Yunnan. The SSTAs over the WNP show a tripole pattern that weakens the WNP subtropical high and further enhances the cyclonic anomaly over Yunnan. The above SST configuration also favors moisture transport to Yunnan. Numerical experiments verify the key physical processes.
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- 2023
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88. A Load-Adaptive Driving Method for a Quasi-Continuous-Wave Laser Diode
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Yajun Wu, Wenqing Liu, Xinhui Sun, Jinxin Chen, Gang Cheng, Xi Chen, Yibin Fu, Pan Liu, and Tianshu Zhang
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quasi-continuous wave ,laser diode driver ,pulsed constant-current source ,load-adaptive driving method ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
A quasi-continuous-wave (QCW) laser diode (LD) driver is commonly used to drive diode bars and stacks designed specifically for QCW operations in solid-state lasers. Such drivers are optimized to deliver peak current and voltage pulses to LDs while maintaining low average power levels. As a result, they are widely used in laser processing devices and laser instruments. Traditional high-energy QCW LD drivers primarily use capacitors as energy storage components and pulsed constant-current sources with op-amps and power metal-oxide-semiconductor field-effect transistors (MOSFETs) as their core circuits for generating repeated constant-current pulses. The drawback of this type of driver is that the driver’s output voltage needs to be manually adjusted according to the operating voltage of the load before use to maximize driver efficiency while providing a sufficient current. Another drawback is its inability to automatically adjust the output voltage to maintain high efficiency when the load changes during the driver operation. Drastic changes in the load can cause the driver to fail to function properly in extreme cases. Based on the above traditional circuit structure, this study designed a stability compensation circuit and realized a QCW LD driver for driving a GS20 diode stack with a maximum repetition rate of 100 Hz, a constant current of approximately 300 A, a load voltage of approximately 10 V, and a pulse width of approximately 300 μs. In particular, a high-efficiency, load-adaptive driving method was used with the MOSFETs in the critical saturation region (i.e., between the linear and saturated regions), controlling its power loss effectively while achieving maximum output current of the driver. The experiments demonstrated that the driver efficiency could be maintained at more than 80% when the load current varied from 50 to 300 A.
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- 2024
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89. Validation of reference genes for normalization of gene expression by qRT-PCR in a resveratrol-producing entophytic fungus (Alternaria sp. MG1)
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Yanlin Liu, Junling Shi, Jinxin Che, and Yao Lu
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0301 basic medicine ,030106 microbiology ,Biophysics ,Biology ,Secondary metabolite ,Resveratrol ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,chemistry.chemical_compound ,Reference genes ,Gene expression ,Botany ,medicine ,Gene ,Genetics ,qRT-PCR ,α-Tubulin ,Alternaria ,biology.organism_classification ,Alternaria sp ,030104 developmental biology ,Real-time polymerase chain reaction ,chemistry ,Cell culture ,Original Article ,Elongation factor 1 ,medicine.drug - Abstract
Alternaria sp. MG1, an endophytic fungus isolated from Vitis vinifera, can independently produce resveratrol, indicating that this species contains the key genes for resveratrol biosynthesis. Identification of these key genes is essential to understand the resveratrol biosynthesis pathway in this strain, which is currently unknown in microorganisms. qRT-PCR is an efficient and widely used method to identify the key genes related to unknown pathways at the level of gene expression. Verification of stable reference genes in this strain is essential for qRT-PCR data normalization, although results have been reported for other Alternaria sp. strains. In this study, nine candidate reference genes including TUBA, EF1, EF2, UBC, UFD, RPS5, RPS24, ACTB and 18S were evaluated for expression stability in a diverse set of six samples representing different growth periods. We compared cell culture conditions and an optimized condition for resveratrol production. The comparison of the results was performed using four statistical softwares. A combination of TUBA and EF1 was found to be suitable for normalization of Alternaria sp. MG1 in different developmental stages, and 18S was found to be the least stable. The reference genes verified in this study will facilitate further research to explore gene expression and molecular mechanisms as well as the improvement of secondary metabolite yields in Alternaria sp. MG1. To our knowledge, this is the first validation of reference genes in Alternaria with the capability to produce resveratrol. Additionally, these results provide useful guidelines for the selection of reference genes in other Alternaria species. Electronic supplementary material The online version of this article (doi:10.1186/s13568-016-0283-z) contains supplementary material, which is available to authorized users.
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- 2016
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90. Transcriptome Analysis Reveals the Genetic Basis of the Resveratrol Biosynthesis Pathway in an Endophytic Fungus (Alternaria sp. MG1) Isolated from Vitis vinifera
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Junling Shi, Zhenhong Gao, Yan Zhang, and Jinxin Che
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0106 biological sciences ,0301 basic medicine ,Chalcone synthase ,Microbiology (medical) ,biosynthesis pathway ,lcsh:QR1-502 ,Stilbenoid ,Resveratrol ,resveratrol ,01 natural sciences ,Microbiology ,lcsh:Microbiology ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,transcriptome analysis ,Biosynthesis ,KEGG ,Secondary metabolism ,genes ,Original Research ,Genetics ,biology ,Phenylpropanoid ,food and beverages ,Alternaria sp ,030104 developmental biology ,chemistry ,Biochemistry ,biology.protein ,010606 plant biology & botany - Abstract
Alternaria sp. MG1, an endophytic fungus previously isolated from Merlot grape, produces resveratrol from glucose, showing similar metabolic flux to the phenylpropanoid biosynthesis pathway, currently found solely in plants. In order to identify the resveratrol biosynthesis pathway in this strain at the gene level, de novo transcriptome sequencing was conducted using Illumina paired-end sequencing. A total of 22,954,434 high-quality reads were assembled into contigs and 18,570 unigenes were identified. Among these unigenes, 14,153 were annotated in the NCBI non-redundant protein database and 5,341 were annotated in the Swiss-Prot database. After KEGG mapping, 2,701 unigenes were mapped onto 115 pathways. Eighty-four unigenes were annotated in major pathways from glucose to resveratrol, coding 20 enzymes for glycolysis, 10 for phenylalanine biosynthesis, 4 for phenylpropanoid biosynthesis, and 4 for stilbenoid biosynthesis. Chalcone synthase was identified for resveratrol biosynthesis in this strain, due to the absence of stilbene synthase. All the identified enzymes indicated a reasonable biosynthesis pathway from glucose to resveratrol via glycolysis, phenylalanine biosynthesis, phenylpropanoid biosynthesis, and stilbenoid pathways. These results provide essential evidence for the occurrence of resveratrol biosynthesis in Alternaria sp. MG1 at the gene level, facilitating further elucidation of the molecular mechanisms involved in this strain’s secondary metabolism.
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- 2016
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91. A high-resolution Orbitrap Mass spectral library for trace volatile compounds in fruit wines
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Yaran Liu, Na Li, Xiaoyao Li, Wenchao Qian, Jiani Liu, Qingyu Su, Yixin Chen, Bolin Zhang, Baoqing Zhu, and Jinxin Cheng
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Science - Abstract
Measurement(s) volatile compounds Technology Type(s) GC-Orbitrap-MS
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- 2022
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92. Abstract LB-064: The discovery of novel small molecular CXCR2 antagonist by using ligand-based pharmacophore model
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Xin Xie, Zhi-Long Wang, Sheng Haichao, Youhong Hu, Feng Huang, Xiaowu Dong, Wenhai Huang, Jinxin Che, and Yongzhou Hu
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Cancer Research ,Tumor microenvironment ,Virtual screening ,Chemistry ,Cancer ,Druglikeness ,medicine.disease ,Ligand (biochemistry) ,Metastasis ,Oncology ,Cancer cell ,medicine ,Cancer research ,Pharmacophore - Abstract
Tumor metastasis has become a fatal disease progress which greatly influence cancer treatment and prognosis. Generally, the metastatic progression can be classified into three main processes: the cancer cells leave the original “tumor home”, travel through “vessel highway”, and settle down in a new “tissue house”. Many agents with various machnisms have been developed for the treatment of cancer cell metastasis, including VEGFR inhibitors, integrin inhibitors, or MMP (matrix metallo protease) inhibitors. Recently a growing interest has been shown for the CXC chemokine receptor 2 (CXCR2), due to their involvement in metastasis physiology. Once CXCR2 is triggered by upstream effectors, it can cause the activation of downstream signals such as serine/threonine kinases, tyrosine kinases. Its essential role in influencing tumor microenvironment makes CXCR2 an important target for anti-tumor metastasis treatment. The first non-peptide CXCR2 antagonist SB225002 was discovered in the mid-1990s by GSK Company. To date, four drug candidates are in clinical trials, including Danirixin, AZD5069, Reparixin and Ladarixin. The clinical indications of AZD5069 were expanded to metastatic head & neck cancer and metastatic pancreatic cancer, in combination with MEDI4736 (a PDL-1 inhibitor). As an excellent computational tool, the pharmacophore model, has been rapidly developed for the identification of novel hit/lead compounds for various targets, especially for proteins without crystal structures. An extensive effort has been made in the attempt to apply pharmacophore model to identify novel VEGFR inhibitors, MMP inhibitors as anti-cancer metastasis agents, revealing that ligand-based pharmacophore model is the best approach when the target geometry is not available, or the binding mode is not elucidated. At present, the binding mode of CXCR2 with its antagonists has not been fully discovered, however, the group of N. Neamati have been trying to establishing a ligand-based pharmacophore model which could be applied for virtual screening to find novel scaffolds of CXCR2 antagonist; this work, for the first time, indicated the feasibility of applying pharmacophore model for the discovery of CXCR2 antagonist. Although a bunch of CXCR2 antagonists have been identified, the anti-tumor metastasis effect of CXCR2 antagonists is not considered in most cases. In our study, a convenient pharmacophore model was built with HipHop program, by screening a mini-database contained compounds which were designed based on the known structure-activity relationship (SAR) of the diarylurea series CXCR2 antagonists. Several novel skeletons with moderate to potent CXCR2 antigonitic activiites were identified. Following optimization resulted in the discovery of compound D45 which showed not only potent CXCR2 antagonist activity with an IC50 value of 10 nM and 910-fold selectivity against CXCR1, but also good in vitro anti-tumor metastatic effect in wound healing assay. Moreover, compound D45 exhibitored promising druglikeness with more than 90% bioavailability in rat. Citation Format: Wen-Hai Huang, Zhi-Long Wang, Jin-Xin Che, Hai-Chao Sheng, Feng Huang, Yong-Zhou Hu, You-Hong Hu, Xin Xie, Xiao-Wu Dong. The discovery of novel small molecular CXCR2 antagonist by using ligand-based pharmacophore model [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr LB-064.
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- 2018
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93. Preparation and intraocular evaluation of cetirizine hydrochloride ophthalmic liposomes and a liposome in situ gel
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Jing Zhang, Lan Wang, Jianghong Li, Yuhong Guo, Jinxin Chen, Xudong Li, Man Cheng, Bo Feng, and Ying Zhang
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cetirizine hydrochloride ,in situ gel ,liposome ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Medical technology ,R855-855.5 - Abstract
Abstract Cetirizine hydrochloride (CTZ), an antiallergic drug, is a new‐generation H1 receptor antagonist and a second‐generation H1 antihistamine. We aimed to prepare cetirizine hydrochloride liposomes, based on which cetirizine hydrochloride liposomal (CTZL) in situ gel (ISG) was prepared, to improve the retention time in the eye. CTZL were prepared by the ethanol injection method combined with the ammonium sulfate gradient method. A CTZ liposomal temperature‐sensitive gel was prepared using the cold dissolution method. Large‐eared white rabbits were used in retention and irritation experiments. The liposomes were small single‐chambered liposomes, spherical or sphere‐like, with a vesicle size of 187.03 ± 6.20 nm, an encapsulation efficiency of 70.39 ± 1.13%, and a drug loading capacity of 4.63 ± 0.06%. The gelling temperatures before and after dilution by simulated tear fluid were 26.1 ± 0.2°C and 34.2 ± 0.2°C, the vesicle size was 184.94 ± 7.28 nm, and the liposomes were spherical or sphere‐like in the gel matrix. The in vitro dissolution and release experiments indicate that the gel was released upon dissolution and exhibited a zero‐level release pattern. Preparation into liposomes and liposomal gels prolonged the ocular retention time of the formulation without ocular irritation.
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- 2023
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94. The high-frequency sea-level change in the aftermath of the Marinoan snowball Earth: Evidence from the Doushantuo formation in the northern margin of the Yangtze Craton, South China
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Kening Qi, Hongwei Kuang, Yongqing Liu, Nan Peng, Yuchong Wang, Xiaoshuai Chen, Mingming Cui, Dawei Qiao, Shuangying Li, Tianhu Chen, Zhixian Wang, Quan Zhong, and Jinxin Chen
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Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 ,Renewable energy sources ,TJ807-830 - Abstract
The rapid rise of glacioeustatic change is the most extreme paleoenvironment alteration in the aftermath of Snowball Earth. Although geologists conducted a lot of multi-subdiscipline research on this issue previously, there still exists the potential room for further discussions of the process in detail. For decades, the practice proved that the Fischer plot is a simple and robust tool to illustrate the fluctuations of accommodation patterns v.s. cycle sets or strata depth which could be interpreted as relative sea-level changes. This research simulates the Fischer plot to unravel the sea-level change in the aftermath of Marinoan glaciation by measuring the lower Ediacaran Doushantuo Formation in Shennongjia, South China. The result shows that 131 fifth-order cycles and nine third-order cycles help us propose a completed second-order cycle variation of ice melting-forced sea-level change, i.e., (1) early high-frequency and slow to rapid stepwise rising, and (2) followed by a stable decrease in the latter. In addition, the vertical sedimentary facies of the lower Doushantuo Formation display, in ascending order, (1) intertidal carbonate rock, (2) subtidal clastics with turbidite, and (3) intertidal lagoon fine clastics, indicating the process of the relative waxing and waning of sea-level. Such interpretation of the Fischer plot and the sedimentary facies’ vertical evolution is beneficial for studying the high-frequency sea-level change and paleogeographic reconstruction of post-Marinoan deglaciation.
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- 2023
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95. Aerodynamic modification and optimization of intermediate pressure compressor in marine intercooled recuperated gas turbine
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Hang Xiang, Jiang Chen, Jinxin Cheng, Chuwei Luo, Han Niu, and Yi Liu
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Intercooled recuperated gas turbine ,Intermediate pressure compressor ,Axial-centrifugal combined compressor ,Free-form deformation ,Aerodynamic optimization ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The intercooling recuperated cycle (ICR) is commonly employed in marine gas turbines to enhance thermal efficiency. However, the addition of an intercooler may lead to the increased dimension and structural complexity of marine ICR gas turbines. To address this issue, we propose an improved configuration of the intermediate pressure compressor – an axial-centrifugal combined compressor (ACC) with high inlet hub-tip ratio and high flow rate. The aerodynamic performance of the ACC at multi-operating points is optimized via an improved free-form deformation method for the parametric modeling of the flow paths and blades of turbomachinery. The result indicates that the number of stages decreases from 6 to 3 and the axial length is reduced by 38.3% after modification. The adiabatic efficiency of the optimized ACC at the design and low-speed operating points is improved by 1.18% and 6.48% respectively. Additionally, the ACC redesigned scheme can reduce the axial length, maximize the flow path space utilization, enhance the stage load capacity, and significantly improve the low-speed performance. This provides a reference for developing advanced marine ICR gas turbines with high power and low fuel consumption.
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- 2023
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96. Bioconversion of Pinoresinol Diglucoside and Pinoresinol from Substrates in the Phenylpropanoid Pathway by Resting Cells of Phomopsis sp.XP-8
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Yanlin Liu, Yan Zhang, Junling Shi, Jinxin Che, Dongyan Shao, Zhenhong Gao, and Laping Liu
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Multidisciplinary ,Phenylpropanoid ,Cost effectiveness ,lcsh:R ,lcsh:Medicine ,Phenylalanine ,Biology ,Cinnamic acid ,chemistry.chemical_compound ,Metabolic pathway ,chemistry ,Pinoresinol ,Biochemistry ,lcsh:Q ,Leucine ,Tyrosine ,lcsh:Science ,Research Article - Abstract
Pinoresinol diglucoside (PDG) and pinoresinol (Pin) are normally produced by plant cells via the phenylpropanoid pathway. This study reveals the existence of a related pathway in Phomopsis sp. XP-8, a PDG-producing fungal strain isolated from the bark of the Tu-chung tree (Eucommiaulmoides Oliv.). After addition of 0.15 g/L glucose to Phomopsis sp. XP-8, PDG and Pin formed when phenylalanine, tyrosine, leucine, cinnamic acid, and p-coumaric acid were used as the substrates respectively. No PDG formed in the absence of glucose, but Pin was detected after addition of all these substrates except leucine. In all systems in the presence of glucose, production of PDG and/or Pin and the accumulation of phenylalanine, cinnamic acid, or p-coumaric acid correlated directly with added substrate in a time- and substrate concentration- dependent manner. After analysis of products produced after addition of each substrate, the mass flow sequence for PDG and Pin biosynthesis was defined as: glucose to phenylalanine, phenylalanine to cinnamic acid, then to p-coumaric acid, and finally to Pin or PDG. During the bioconversion, the activities of four key enzymes in the phenylpropanoid pathway were also determined and correlated with accumulation of their corresponding products. PDG production by Phomopsis sp. exhibits greater efficiency and cost effectiveness than the currently-used plant-based system and will pave the way for large scale production of PDG and/or Pin for medical applications.
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- 2015
97. Instance Segmentation and Ensemble Learning for Automatic Temperature Detection in Multiparous Sows
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Hongxiang Xue, Mingxia Shen, Yuwen Sun, Haonan Tian, Zihao Liu, Jinxin Chen, and Peiquan Xu
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sow ,temperature monitoring ,instance segmentation ,ensemble learning ,Chemical technology ,TP1-1185 - Abstract
The core body temperature serves as a pivotal physiological metric indicative of sow health, with rectal thermometry prevailing as a prevalent method for estimating core body temperature within sow farms. Nonetheless, employing contact thermometers for rectal temperature measurement proves to be time-intensive, labor-demanding, and hygienically suboptimal. Addressing the issues of minimal automation and temperature measurement accuracy in sow temperature monitoring, this study introduces an automatic temperature monitoring method for sows, utilizing a segmentation network amalgamating YOLOv5s and DeepLabv3+, complemented by an adaptive genetic algorithm-random forest (AGA-RF) regression algorithm. In developing the sow vulva segmenter, YOLOv5s was synergized with DeepLabv3+, and the CBAM attention mechanism and MobileNetv2 network were incorporated to ensure precise localization and expedited segmentation of the vulva region. Within the temperature prediction module, an optimized regression algorithm derived from the random forest algorithm facilitated the construction of a temperature inversion model, predicated upon environmental parameters and vulva temperature, for the rectal temperature prediction in sows. Testing revealed that vulvar segmentation IoU was 91.50%, while the predicted MSE, MAE, and R2 for rectal temperature were 0.114 °C, 0.191 °C, and 0.845, respectively. The automatic sow temperature monitoring method proposed herein demonstrates substantial reliability and practicality, facilitating an autonomous sow temperature monitoring.
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- 2023
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98. A Nonbalanced Staggered-Grid FDTD Scheme for the First-Order Elastic-Wave Extrapolation and Reverse-Time Migration
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Wenquan Liang, Guoxin Chen, Yanfei Wang, Jingjie Cao, and Jinxin Chen
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Elastic waves ,finite-difference methods ,geophysics computing ,reverse-time migration (RTM) ,Ocean engineering ,TC1501-1800 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
In this study, an efficient and accurate staggered-grid finite-difference time-domain method to solve the two-dimensional (2-D) first-order stress–velocity elastic-wave equation is proposed. In the conventional implementation of the staggered-grid finite-difference (SGFD) method, the same SGFD operator is used to approximate the spatial derivatives. However, we propose a numerical method based on the mixed SGFD operators that are more efficient but similar in accuracy when compared with a uniform SGFD operator. We refer to the proposed method as the nonbalanced SGFD numerical scheme that combines the high-order SGFD operators with the second-order SGFD operators. The suitability of the proposed scheme is verified by dispersion analysis. Through SGFD modeling and reverse-time migration examples, we demonstrate that the proposed nonbalanced scheme offers a similar level of accuracy with a lower computational cost compared with the time-consuming conventional SGFD method.
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- 2022
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99. Nutrient recovery technologies for management of blackwater: A review
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Xuemei Wang, Jinxin Chen, Zifu Li, Shikun Cheng, Heinz-Peter Mang, Lei Zheng, Inayatullah Jan, and Hidenori Harada
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blackwater ,toilet ,feces ,urine ,source separation ,nutrient recovery ,Environmental sciences ,GE1-350 - Abstract
Nutrient recovery and recycling are of great importance in sustainable development. Blackwater (BW) refers to wastewater from toilets, which contains feces, urine, water, and toilet paper from flush toilets. The highly concentrated nutrients of blackwater could be collected through source separation and treated adequately to recover nutrients efficiently and economically. The review intends to give an overview of the characteristics of BW and different techniques to recover nutrients and other valuable products. A number of these technologies are currently under development or being tested at laboratory or pilot scale. The perspective for blackwater nutrient recovery technologies is very positive due to their great potential. For application of source-oriented sanitation infrastructure and systems, there is still a long way to go for development of commercial technologies and valuable products.
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- 2023
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100. Alkenyl/thiol-derived metal-organic frameworks (MOFs) by means of postsynthetic modification for effective mercury adsorption
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Tao Liu, Jinxin Che, Yongzhou Hu, Xin-Yuan Liu, Xiaowu Dong, and Chi-Ming Che
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Reaction conditions ,chemistry.chemical_classification ,Chromium ,Tandem ,Chemistry ,Organic Chemistry ,chemistry.chemical_element ,General Chemistry ,Mercury ,Alkenes ,Catalysis ,Mercury (element) ,Water Purification ,Adsorption ,Mercury adsorption ,Side chain ,Thiol ,Organometallic Compounds ,Organic chemistry ,Metal-organic framework ,Water Pollutants ,Sulfhydryl Compounds - Abstract
The synthesis of new functionally diverse alkenyl-derived Cr-MIL-101s (MIL=material of Institute Lavoisier) was realized by a novel and convenient postsynthetic modification (PSM) protocol by means of the carbon-carbon bond-forming Mizoroki-Heck reaction. The new PSM protocol demonstrates a broad scope of substrates with excellent tolerance of functionality under mild reaction conditions. Moreover, a new metal-organic framework (MOF) that bears both alkenyl and thiol side chains prepared by means of the tandem PSM method has shown excellent adsorbent ability in removing mercury ions from water.
- Published
- 2014
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