61 results on '"Ji Quan Sun"'
Search Results
52. Saccharibacillus deserti sp. nov., isolated from desert soil
- Author
-
Xiao-Lei Wu, Xin-Ying Wang, Li-Juan Wang, Lian Xu, Liu Min, and Ji-Quan Sun
- Subjects
0301 basic medicine ,DNA, Bacterial ,China ,Sequence analysis ,Biology ,Microbiology ,03 medical and health sciences ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Ecology, Evolution, Behavior and Systematics ,Phospholipids ,Phylogeny ,Soil Microbiology ,Genetics ,Bacillales ,Base Composition ,Strain (chemistry) ,Phylogenetic tree ,Fatty Acids ,Nucleic Acid Hybridization ,Vitamin K 2 ,General Medicine ,Sequence Analysis, DNA ,Ribosomal RNA ,16S ribosomal RNA ,Bacterial Typing Techniques ,genomic DNA ,030104 developmental biology ,Soil microbiology - Abstract
A Gram-stain-positive, facultatively anaerobic bacterial strain, designated WLJ055T, with polar and subpolar flagella was isolated from the top layer of desert soil from Erdos, Inner Mongolia, northern China. Phylogenetic analysis, based on 16S rRNA gene sequences, revealed that strain WLJ055T was a member of the genus Saccharibacillus, and shared 97.17-97.24 % 16S rRNA gene sequence similarities with Saccharibacillus sacchari GR21T and Saccharibacillus kuerlensis HR1T. The major polar lipids of strain WLJ055T were diphosphatidylglycerol, phosphatidylglycerol, an unknown aminophospholipid, two unknown glycolipids and an unknown phosphoglycolipid. MK-7 was the predominant menaquinone, while anteiso-C15 : 0, C16 : 0, iso-C16 : 0, and anteiso-C17 : 0 were the major cellular fatty acids. Its genomic DNA G+C content was 55.5 mol%. DNA-DNA hybridization revealed that strain WLJ055T showed 45 ± 5 % and 40 ± 5 % genomic DNA relatedness with its two closest relatives, S. sacchari GR21T and S. kuerlensis HR1T, respectively. The results of physiological and biochemical tests allowed the discrimination of strain WLJ055T from its phylogenetic relatives. Saccharibacillus deserti sp. nov. is therefore proposed to be a novel species of the genus Saccharibacillus, with strain WLJ055T ( = CGMCC 1.15276T = KCTC 33693T) as the type strain.
- Published
- 2015
53. Draft Genome Sequence of a Rhodococcus Strain Isolated from Tannery Wastewater Treatment Sludge
- Author
-
Ji-Quan Sun, Li-Juan Wang, Lian Xu, and Xiao-Lei Wu
- Subjects
Whole genome sequencing ,Chromate conversion coating ,Arsenate ,chemistry.chemical_element ,Biology ,Mercury (element) ,Microbiology ,chemistry.chemical_compound ,chemistry ,Genetics ,Phenol ,Sewage treatment ,Prokaryotes ,Molecular Biology ,Cobalt ,Gene - Abstract
Rhodococcus sp. Chr-9 can degrade pyridine in the presence of chromate. Its draft genome sequence revealed that strain Chr-9 harbors sets of genes for resistance to heavy metals such as lead, mercury, arsenate, and cobalt, as well as three different gene clusters for metabolizing aromatic compounds, such as phenol, benzoate, and 4-nitrophenol.
- Published
- 2015
- Full Text
- View/download PDF
54. Spirodela polyrhiza stimulates the growth of its endophytes but differentially increases their fenpropathrin-degradation capabilities
- Author
-
Ji-Quan Sun, Xing-Jian Xu, Yong Nie, and Xiao-Lei Wu
- Subjects
Environmental Engineering ,Health, Toxicology and Mutagenesis ,Bacterial growth ,Bioremediation ,Spirodela polyrhiza ,Klebsiella terrigena ,Chlorophyta ,Aquatic plant ,Klebsiella ,Pseudomonas ,Botany ,Pyrethrins ,Endophytes ,Environmental Chemistry ,Araceae ,Soil Pollutants ,biology ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,biology.organism_classification ,Pollution ,Phytoremediation ,Biodegradation, Environmental ,Microcosm ,Water Pollutants, Chemical - Abstract
In situ remediation of organic contaminants via physical, chemical, and biological approaches is a practical technique for cleansing contaminated water and soil. In the present study, we showed that the three bacterial strains Pseudomonas sp. E1, Klebsiella terrigena E42, and Pseudomonas sp. E46, which can infect and colonize the aquatic plant Spirodela polyrhiza, utilize fenpropathrin as the sole carbon source for growth. S. polyrhiza helped enhance fenpropathrin degradation by E46 by 17.5%, only slightly improved fenpropathrin degradation by E42, and had no effect on strain E1. The application of plant exudates and extracts from fenpropathrin-unexposed/induced plants stimulated bacterial growth of the three strains, but resulted in differential fenpropathrin degradation, suggesting that not all plants and their endophytic bacteria are suitable for coupling phytoremediation and microbial-remediation. Moreover, addition of soil sediments to a microcosm not only stimulated the growth of strain E46 but also increased the rate of fenpropathrin degradation.
- Published
- 2014
55. Diverse bacteria isolated from microtherm oil-production water
- Author
-
Zhao Zhang, Xiao-Lei Wu, Yue-Qin Tang, Yan Li, Ji-Quan Sun, and Lian Xu
- Subjects
DNA, Bacterial ,China ,food.ingredient ,Firmicutes ,AlkB ,Micrococcus ,Microbiology ,DNA, Ribosomal ,Actinobacteria ,Agar plate ,food ,RNA, Ribosomal, 16S ,Alkanes ,Cluster Analysis ,Oil and Gas Fields ,Molecular Biology ,Phylogeny ,biology ,Bacteria ,General Medicine ,Biodiversity ,Sequence Analysis, DNA ,biology.organism_classification ,Carbon ,Culture Media ,Bavariicoccus ,biology.protein ,Proteobacteria ,Water Microbiology - Abstract
In total, 435 pure bacterial strains were isolated from microtherm oil-production water from the Karamay Oilfield, Xinjiang, China, by using four media: oil-production water medium (Cai medium), oil-production water supplemented with mineral salt medium (CW medium), oil-production water supplemented with yeast extract medium (CY medium), and blood agar medium (X medium). The bacterial isolates were affiliated with 61 phylogenetic groups that belong to 32 genera in the phyla Actinobacteria, Firmicutes, and Proteobacteria. Except for the Rhizobium, Dietzia, and Pseudomonas strains that were isolated using all the four media, using different media led to the isolation of bacteria with different functions. Similarly, nonheme diiron alkane monooxygenase genes (alkB/alkM) also clustered according to the isolation medium. Among the bacterial strains, more than 24 % of the isolates could use n-hexadecane as the sole carbon source for growth. For the first time, the alkane-degrading ability and alkB/alkM were detected in Rhizobium, Rhodobacter, Trichococcus, Micrococcus, Enterococcus, and Bavariicoccus strains, and the alkM gene was detected in Firmicutes strains.
- Published
- 2013
56. [Study on cooperating degradation of cypermethrin and 3-phenoxybenzoic acid by two bacteria strains]
- Author
-
Yu-Xin, Xu, Ji-Quan, Sun, Xiao-Hui, Li, Shun-Peng, Li, and Yi, Chen
- Subjects
Biodegradation, Environmental ,Time Factors ,Pseudomonas ,Pyrethrins ,Rhodococcus ,Benzoates - Abstract
The microbial cooperated reaction is one of the most important forms of microbial degradation of organic pollutants. Although there were many research reports of cooperating degradation, less report on the microbial cooperated of pyrethroid degradation to be found. We have isolated one degrading-bacteria strain named CDT3 for degradation of cypermethrin, which can degraded the cypermethrin into 3-PBA and DCVA. At the same time, we also isolated another degrading-bacteria strain named as PBM11, which could get multiplication on 3-PBA as its C source and energy source. The cooperative degradation process of cypermethrin and 3-Phenoxybenzoic acid (3-PBA) using the two degrading-bacteria strain CDT3 and PBM11 was investigated. An obvious inhibition to the cypermethrin degrading-bacterium strain CDT3 (Rhodococcus sp.) by its metabolic mediate 3-PBA was found; meanwhile there is no effect on the growth of 3-PBA degrading-bacterium strain PBM11 (Pesudomonas sp.) when the concentration of cypermethrin was lower than 200 mg/L. The degradation rate of cypermethrin by both strain CDT3 and PBM11 was higher than that by CDT3 alone. The biomass of PBM11 increased along with the degradation of cypermethrin and 3-PBA, but that of CDT3 not. There was no the accumulation of 3-PBA when the simultaneous addition of strain CDT3 and PBM11, however, an obvious one within 24h if inoculation of strain PBM11 was later 24h after inoculation of strain CDT3, Subsequently the 3-PBA was degraded rapidly by strain PBM11. The strains CDT3 and PBM11 showed some characteristics of co-metabolism, however it is not actual degradation form of co-metabolism. For examples, although the degrading sub product of cypermethrin by CDT3 could be utilized, the multiplication of PBM11 could not enhance the multiplication of CDT3, implied there is no obvious relationship between the two strains. Also, to add PBM11 could eliminate the inhibition of 3-PBA to CDT3. Thus, the cooperating degradation of strains CDT3 and PBM11 could promote the degradation of cypermethrin as well as eliminate the residues of middle products. The present research results provide new evidence for the theory of cooperated degradation, but a further research may be necessary.
- Published
- 2007
57. [Isolation and characteristic of a moderately halophilic bacterium accumulated ectoine as main compatible solute]
- Author
-
Jian, He, Ting, Wang, Ji-Quan, Sun, Li-Feng, Gu, and Shun-Peng, Li
- Subjects
Bacteria ,Amino Acids, Diamino ,Phylogeny ,Soil Microbiology - Abstract
A moderately halophilic bacterium(designated strain I15) was isolated from lawn soil. Based on the analysis of 16S rDNA (GenBank accession number DQ010162), morphology, physiological and biochemical characteristics, strain I15 was identified as Virgibacillus marismortuii. This strain was capable of growing under 0% approximately 25% NaCl, and exhibited an optimum NaCl concentration of 10% and an optimum temperature of 30 degrees C and an optimum pH of 7.5 - 8.0 for its growth, respectively. Under hyperosmotic stress, strain 115 accumulated ectoine as the main compatible solute. Under 15% NaCl conditions the intracellar ectoine can reach to 1.608 mmol/(g x cdw), accounted for 89.6% of the total compatible solutes. The biosynthesis of ectoine was under the control of osmotic, and the accumulated ectoine synthesized intraceilularly can released under hypoosmotic shocks and resynthesis under hyperosmotic shock rapidly.
- Published
- 2006
58. [Construction of multifunctional genetically engineered pesticides-degrading bacteria by homologous recombination]
- Author
-
Jian-Dong, Jiang, Li-Feng, Gu, Ji-Quan, Sun, Xian-Zhu, Dai, Yang, Wen, and Shun-Peng, Li
- Subjects
Genetic Markers ,Recombination, Genetic ,Carbofuran ,Insecticides ,Biodegradation, Environmental ,Organisms, Genetically Modified ,RNA, Ribosomal, 16S ,Environmental Pollutants ,Sphingomonas ,Phosphoric Monoester Hydrolases - Abstract
Construction of multifunctional pesticides-degrading genetically engineered microorganisms (GEMs) is increasing important in the bioremediation of various pesticides contaminants in environment. However, construction of genetically stable GEMs without any exogenous antibiotic resistance is thought to be one of the bottlenecks in GEMs construction. In this article, homologous recombination vectors with the recipient's 16S rDNA as homologous recombination directing sequence (HRDS) and sacB gene as double crossover recombinants positive selective marker were firstly constructed. The methyl parathion hydroalse gene (mpd) was inserted into the 16S rDNA site of the carbofuran degrading strain Sphingomonas sp. CDS-1 by homologous recombination single crossover in the level of about 3.7 x 10-(7) - 6.8 x 10(-7). Multifunctional pesticides-degrading GEMs with one or two mpd genes inserted into the chromosome without any antibiotic marker were successfully constructed. The homologous recombination events were confirmed by PCR and southern blot methods. The obtained GEMs were genetically stable and could degrade methyl parathion and carbofuran simultaneously. The insertion of mpd gene into rrn site did not have any significant effect on recipient' s physiological and original degrading characteristics. The methyl parathion hydrolase (MPH) was expressed at a relatively high level in the recombinants and the recombinant MPH specific activity in cell lysate was higher than that of original bacterium (DLL-1) in every growth phase tested. The highest recombinant MPH specific activity was 6.22 mu/tg. In this article, we describe a first attempt to use rRNA-encoding regions of Sphingomonas strains as target site for expression of exogenous MPH, and constructed multifunctional pesticides degrading GEMs, which are genetically stable and promising for developing bioremediation strategies for the decontamination of pesticides polluted soils.
- Published
- 2006
59. Degradation Characteristics of Pyridine and Phenolby Rhodococcus sp. Chr-9
- Author
-
Ji-Quan Sun, Fuming Chen, Lian Xu, Xiaolei Wu, and Yueqin Tang
- Subjects
chemistry.chemical_classification ,Strain (chemistry) ,biology ,Salt (chemistry) ,chemistry.chemical_element ,Biodegradation ,biology.organism_classification ,Pollution ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Pyridine ,Genetics ,Degradation (geology) ,Phenol ,Agronomy and Crop Science ,Carbon ,Rhodococcus ,Nuclear chemistry - Abstract
The degradation characteristics of pyridine and phenol by Rhodococcus sp.Chr-9 were studied.The results showed that strain Chr-9 could completely degrade 200 mg L-1 of pyridine or phenol respectively supplemented as sole carbon source within 72 hours in mineral salt medium.The optimal pH and temperature for pyridine degradation by strain Chr-9 were 8.0 and 35 ℃,respectively.The degradation rate of pyridine or phenol by strain Chr-9 was negatively related with its initial concentration in mineral salt medium.Strain Chr-9 could utilize pyridine as sole carbon and nitrogen source for growth,and the supplementation of phenol could enhance the strain growth when there was no other nitrogen source except pyridine in mineral salt media.Fig 7,Ref 12
- Published
- 2012
- Full Text
- View/download PDF
60. Isolation and characterization of an abamectin-degrading Burkholderia cepacia-like GB-01 strain.
- Author
-
Ali, Shinawar Waseem, Li, Rong, Wei-you Zhou, Ji-quan Sun, Peng Guo, Ji-ping Ma, and Shun-peng Li
- Subjects
BURKHOLDERIA ,ABAMECTIN ,INSECTICIDES ,SOIL invertebrates ,CHROMATOGRAPHIC analysis ,HIGH performance liquid chromatography - Abstract
Abamectin is widely used in agriculture as an insecticide and in veterinary as an anti-parasitic agent, and has caused great environmental pollution by posing potential risk to non-target soil invertebrates and nearby aquatic systems. A bacterium designated GB-01, which was capable of degrading abamectin, was isolated from soil by enrichment culture method. On the basis of morphological, physiological and biochemical characteristics, combined with phylogenetic analysis of 16S rRNA gene, the bacterium GB-01 was identified as Burkholderia cepacia-like species. The bacterium GB-01 was able to utilize abamectin as its sole carbon source for growth, and could degrade more than 90% of abamectin at initial concentrations of 50 and 100 mg l
−1 in mineral salt medium in 30 and 36 h, respectively. The longer degradation cycle was observed with abamectin concentrations higher than 100 mg l−1 . Optimal growth temperatures and pH values with highest degradation rate were 30–35°C and 7–8, respectively. Two new degradation products were identified and characterized by high performance liquid chromatography-tandem mass spectrometry (HPLC–MS/MS) based mass spectral data and a plausible partial degradation pathway of abamectin was proposed. This is the first report in which an abamectin-degrading Burkholderia species isolated from soil was identified and characterized. [ABSTRACT FROM AUTHOR]- Published
- 2010
- Full Text
- View/download PDF
61. Characterization and molecular mechanism of a naturally occurring metsulfuron-methyl resistant strain of Pseudomonas aeruginosa.
- Author
-
Xing Huang, Jian He, Xiao-Fei Sun, Ji-Quan Sun, Yong-Feng Li, Jing-Jing Shen, and Shun-Peng Li
- Subjects
PSEUDOMONAS aeruginosa ,ACETOLACTATE synthase ,METSULFURON ,RNA ,PSEUDOMONAS ,HERBICIDES - Abstract
Strain L36, naturally resistant to the herbicide metsulfuron-methyl (SM), was isolated and characterized with respect to the molecular mechanism of resistance. The isolate was identified as Pseudomonas aeruginosa based on bacterial morphology, physiology, cellular fatty acid, and 16S rRNA gene sequence. Minimal inhibitory concentrations of metsulfuron-methyl against the growth of L36 and wild type isolate PAO1 were 6.03 and 1.33 mM, respectively. L36 carried a nucleotide base change in the acetolactate synthase (ALS) gene that coded for a single amino acid mutation (Ala29 → Val29). The mutated ilvIH gene was functionally expressed, purified, and the kinetic properties of the purified ALS were tested. The mutant enzyme had K
m for pyruvate fourfold higher than the wild type enzyme, and Ki app for sulfonylureas some 30-fold higher. The A29 V mutation in the ALS resulted in the resistance of P. aeruginosa to sulfonylurea herbicides but not to imidazolinone herbicides. [ABSTRACT FROM AUTHOR]- Published
- 2010
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.