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511 results on '"Janies, Daniel"'

51. Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination

Author

Truelove, Shaun, primary, Smith, Claire P, primary, Qin, Michelle, additional, Mullany, Luke C, additional, Borchering, Rebecca K, additional, Lessler, Justin, additional, Shea, Katriona, additional, Howerton, Emily, additional, Contamin, Lucie, additional, Levander, John, additional, Kerr, Jessica, additional, Hochheiser, Harry, additional, Kinsey, Matt, additional, Tallaksen, Kate, additional, Wilson, Shelby, additional, Shin, Lauren, additional, Rainwater-Lovett, Kaitlin, additional, Lemairtre, Joseph C, additional, Dent, Juan, additional, Kaminsky, Joshua, additional, Lee, Elizabeth C, additional, Perez-Saez, Javier, additional, Hill, Alison, additional, Karlen, Dean, additional, Chinazzi, Matteo, additional, Davis, Jessica T, additional, Mu, Kunpeng, additional, Xiong, Xinyue, additional, Pastore y Piontti, Ana, additional, Vespignani, Alessandro, additional, Srivastava, Ajitesh, additional, Porebski, Przemyslaw, additional, Venkatramanan, Srinivasan, additional, Adiga, Aniruddha, additional, Lewis, Bryan, additional, Klahn, Brian, additional, Outten, Joseph, additional, Orr, Mark, additional, Harrison, Galen, additional, Hurt, Benjamin, additional, Chen, Jiangzhuo, additional, Vullikanti, Anil, additional, Marathe, Madhav, additional, Hoops, Stefan, additional, Bhattacharya, Parantapa, additional, Machi, Dustin, additional, Chen, Shi, additional, Paul, Rajib, additional, Janies, Daniel, additional, Thill, Jean-Claude, additional, Galanti, Marta, additional, Yamana, Teresa K, additional, Pei, Sen, additional, Shaman, Jeffrey L, additional, Healy, Jessica M, additional, Slayton, Rachel B, additional, Biggerstaff, Matthew, additional, Johansson, Michael A, additional, Runge, Michael C, additional, and Viboud, Cecile, additional

Published
2022
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52. Author response: Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination

Author

Truelove, Shaun, primary, Smith, Claire P, primary, Qin, Michelle, additional, Mullany, Luke C, additional, Borchering, Rebecca K, additional, Lessler, Justin, additional, Shea, Katriona, additional, Howerton, Emily, additional, Contamin, Lucie, additional, Levander, John, additional, Kerr, Jessica, additional, Hochheiser, Harry, additional, Kinsey, Matt, additional, Tallaksen, Kate, additional, Wilson, Shelby, additional, Shin, Lauren, additional, Rainwater-Lovett, Kaitlin, additional, Lemairtre, Joseph C, additional, Dent, Juan, additional, Kaminsky, Joshua, additional, Lee, Elizabeth C, additional, Perez-Saez, Javier, additional, Hill, Alison, additional, Karlen, Dean, additional, Chinazzi, Matteo, additional, Davis, Jessica T, additional, Mu, Kunpeng, additional, Xiong, Xinyue, additional, Pastore y Piontti, Ana, additional, Vespignani, Alessandro, additional, Srivastava, Ajitesh, additional, Porebski, Przemyslaw, additional, Venkatramanan, Srinivasan, additional, Adiga, Aniruddha, additional, Lewis, Bryan, additional, Klahn, Brian, additional, Outten, Joseph, additional, Orr, Mark, additional, Harrison, Galen, additional, Hurt, Benjamin, additional, Chen, Jiangzhuo, additional, Vullikanti, Anil, additional, Marathe, Madhav, additional, Hoops, Stefan, additional, Bhattacharya, Parantapa, additional, Machi, Dustin, additional, Chen, Shi, additional, Paul, Rajib, additional, Janies, Daniel, additional, Thill, Jean-Claude, additional, Galanti, Marta, additional, Yamana, Teresa K, additional, Pei, Sen, additional, Shaman, Jeffrey L, additional, Healy, Jessica M, additional, Slayton, Rachel B, additional, Biggerstaff, Matthew, additional, Johansson, Michael A, additional, Runge, Michael C, additional, and Viboud, Cecile, additional

Published
2022
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54. Twinkle twinkle brittle star: the draft genome of {\it Ophioderma brevispinum} (Echinodermata: Ophiuroidea) as a resource for regeneration research

Author

Mashanov, Vladimir, Jacob Machado, Denis, Cory Brower, Reid, Rob, Kofsky, Janice, and Janies, Daniel A.

Subjects
Notch signaling pathway, brittle star, tissue regeneration, comparative genomics, Ophiuroidea, Echinodermata
Abstract

This Zenodo upload contains data from the draft genome of the brittle star Ophioderma brevispinum (Say, 1859). Please read our READ-ME.mdfile for additional details. You can citethe paper: Mashanov, V., Machado, D.J., Reid, R.et al.Twinkle twinkle brittle star: the draft genome ofOphioderma brevispinum(Echinodermata: Ophiuroidea) as a resource for regeneration research.BMC Genomics23, 574 (2022). https://doi.org/10.1186/s12864-022-08750-y. Abstract: Background—Echinoderms are established models in experimental and developmental biology, however genomic resources are still lacking for many species. Here, we present the draft genome ofOphioderma brevispinum, an emerging model organism in the field of regenerative biology. This new genomic resource provides a reference for experimental studies of regenerative mechanisms. Results—We report a de novo nuclear genome assembly for the brittle starO. brevispinumand annotation facilitated by the transcriptome assembly. The final assembly is 2.68 Gb in length and contains 146,703 predicted protein-coding gene models. We also report a mitochondrial genome for this species, which is 15,831 bp in length, and contains 13 protein-coding, 22 tRNAs, and 2 rRNAs genes, respectively. In addition, 29 genes of the Notch signaling pathway are identified to illustrate the practical utility of the assembly for studies of regeneration. Conclusions—The sequenced and annotated genome ofO. brevispinumpresented here provides the first such resource for an ophiuroid model species. Considering the remarkable regenerative capacity of this species, this genome will be an essential resource in future research efforts on molecular mechanisms regulating regeneration. &nbsp

Published
2022
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55. Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: a multi-model study

Author

Borchering, Rebecca K., primary, Mullany, Luke C., additional, Howerton, Emily, additional, Chinazzi, Matteo, additional, Smith, Claire P., additional, Qin, Michelle, additional, Reich, Nicholas G., additional, Contamin, Lucie, additional, Levander, John, additional, Kerr, Jessica, additional, Espino, J, additional, Hochheiser, Harry, additional, Lovett, Kaitlin, additional, Kinsey, Matt, additional, Tallaksen, Kate, additional, Wilson, Shelby, additional, Shin, Lauren, additional, Lemaitre, Joseph C., additional, Hulse, Juan Dent, additional, Kaminsky, Joshua, additional, Lee, Elizabeth C., additional, Davis, Jessica T., additional, Mu, Kunpeng, additional, Xiong, Xinyue, additional, Piontti, Ana Pastore y, additional, Vespignani, Alessandro, additional, Srivastava, Ajitesh, additional, Porebski, Przemyslaw, additional, Venkatramanan, Srini, additional, Adiga, Aniruddha, additional, Lewis, Bryan, additional, Klahn, Brian, additional, Outten, Joseph, additional, Hurt, Benjamin, additional, Chen, Jiangzhuo, additional, Mortveit, Henning, additional, Wilson, Amanda, additional, Marathe, Madhav, additional, Hoops, Stefan, additional, Bhattacharya, Parantapa, additional, Machi, Dustin, additional, Chen, Shi, additional, Paul, Rajib, additional, Janies, Daniel, additional, Thill, Jean-Claude, additional, Galanti, Marta, additional, Yamana, Teresa, additional, Pei, Sen, additional, Shaman, Jeffrey, additional, Espana, Guido, additional, Cavany, Sean, additional, Moore, Sean, additional, Perkins, Alex, additional, Healy, Jessica M., additional, Slayton, Rachel B., additional, Johansson, Michael A., additional, Biggerstaff, Matthew, additional, Shea, Katriona, additional, Truelove, Shaun A., additional, Runge, Michael C., additional, Viboud, Cécile, additional, and Lessler, Justin, additional

Published
2022
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58. Analysis of the Knockdown Resistance Locus (kdr) in Anopheles stephensi, An. arabiensis, and Culex pipiens s.l. for Insight Into the Evolution of Target-site Pyrethroid Resistance in Eastern Ethiopia

Author

Carter, Tamar E., primary, Gebresilassie, Araya, additional, Hansel, Shantoy, additional, Damodaran, Lambodhar, additional, Montgomery, Callum, additional, Bonnell, Victoria, additional, Lopez, Karen, additional, Janies, Daniel, additional, and Yared, Solomon, additional

Published
2022
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64. Additional file 3 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

Author

Mashanov, Vladimir, Machado, Denis Jacob, Reid, Robert, Brouwer, Cory, Kofsky, Janice, and Janies, Daniel A.

Abstract

Additional file 3 File S3. Bioinformatics protocols for quality control of raw sequence reads, subsequent genome assembly, and the methodology and main results for BUSCO v4.0.6 analyses.

Published
2022
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71. Protein Interaction Analysis of Plasmodium falciparum Circumsporozoite Protein Variants With Human Immunoproteins Explains RTS,S Vaccine Efficacy

Author

Dieng, Cheikh Cambel, primary, Ford, Colby T., additional, Lerch, Anita, additional, Doniou, Dickson, additional, Huynh, Jennifer, additional, Vegesna, Kovidh, additional, Guo, Jun-tao, additional, Janies, Daniel, additional, Amoah, Linda, additional, Afrane, Yaw, additional, and Lo, Eugenia, additional

Published
2022
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74. Shallow-water holothuroids (Echinodermata) of Yap, Federated States of Micronesia

Author

Kim, Sun W., Miller, Allison K., Brunson, Catherine, Netchy, Kristin, Clouse, Ronald M., Janies, Daniel, Tardy, Emmanuel, and Kerr, Alexander M.

Subjects
Echinodermata -- Research, Coral reefs and islands -- Research -- Genetic aspects, Earth sciences, Science and technology
Abstract

Abstract: In December 2002, July 2007, and December 2009, we surveyed the sea cucumber fauna of the western Caroline Island of Yap (Federated States of Micronesia). We collected 37 species [...]

Published
2014
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77. Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination

Author

Truelove, Shaun, primary, Smith, Claire P., additional, Qin, Michelle, additional, Mullany, Luke C., additional, Borchering, Rebecca K., additional, Lessler, Justin, additional, Shea, Katriona, additional, Howerton, Emily, additional, Contamin, Lucie, additional, Levander, John, additional, Salerno, Jessica, additional, Hochheiser, Harry, additional, Kinsey, Matt, additional, Tallaksen, Kate, additional, Wilson, Shelby, additional, Shin, Lauren, additional, Rainwater-Lovett, Kaitlin, additional, Lemaitre, Joseph C., additional, Dent, Juan, additional, Kaminsky, Joshua, additional, Lee, Elizabeth C., additional, Perez-Saez, Javier, additional, Hill, Alison, additional, Karlen, Dean, additional, Chinazzi, Matteo, additional, Davis, Jessica T., additional, Mu, Kunpeng, additional, Xiong, Xinyue, additional, y Piontti, Ana Pastore, additional, Vespignani, Alessandro, additional, Srivastava, Ajitesh, additional, Porebski, Przemyslaw, additional, Venkatramanan, Srinivasan, additional, Adiga, Aniruddha, additional, Lewis, Bryan, additional, Klahn, Brian, additional, Outten, Joseph, additional, Schlitt, James, additional, Corbett, Patrick, additional, Telionis, Pyrros Alexander, additional, Wang, Lijing, additional, Peddireddy, Akhil Sai, additional, Hurt, Benjamin, additional, Chen, Jiangzhuo, additional, Vullikanti, Anil, additional, Marathe, Madhav, additional, Hoops, Stefan, additional, Bhattacharya, Parantapa, additional, Machi, Dustin, additional, Chen, Shi, additional, Paul, Rajib, additional, Janies, Daniel, additional, Thill, Jean-Claude, additional, Galanti, Marta, additional, Yamana, Teresa, additional, Pei, Sen, additional, Shaman, Jeffrey, additional, Reich, Nicholas G., additional, Healy, Jessica M., additional, Slayton, Rachel B., additional, Biggerstaff, Matthew, additional, Johansson, Michael A., additional, Runge, Michael C., additional, and Viboud, Cécile, additional

Published
2021
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82. Additional file 4 of Detection of high prevalence of Plasmodium falciparum histidine-rich protein 2/3 gene deletions in Assosa zone, Ethiopia: implication for malaria diagnosis

Author

Gezahegn Solomon Alemayehu, Blackburn, Kayla, Lopez, Karen, Cheikh Cambel Dieng, Lo, Eugenia, Janies, Daniel, and Lemu Golassa

Subjects
parasitic diseases
Abstract

Additional file 4: The results of PCR Pfhrp2 exon2, PfHRP2 RDTs, Microscopy with Parasite density /µl, and qPCR with parasite density/μl and Ct values among P.falciparum positive isolates.

Published
2021
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87. Additional file 10 of Genetic variation of Plasmodium falciparum histidine-rich protein 2 and 3 in Assosa zone, Ethiopia: its impact on the performance of malaria rapid diagnostic tests

Author

Alemayehu, Gezahegn Solomon, Messele, Alebachew, Blackburn, Kayla, Lopez, Karen, Lo, Eugenia, Janies, Daniel, and Golassa, Lemu

Subjects
parasitic diseases, equipment and supplies
Abstract

Additional file 10. Effect of the number of PfHRP2 and PfHRP3 amino acid repeat on the performance of PfHRP2 RDT.

Published
2021
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90. Additional file 9 of Genetic variation of Plasmodium falciparum histidine-rich protein 2 and 3 in Assosa zone, Ethiopia: its impact on the performance of malaria rapid diagnostic tests

Author

Alemayehu, Gezahegn Solomon, Messele, Alebachew, Blackburn, Kayla, Lopez, Karen, Lo, Eugenia, Janies, Daniel, and Golassa, Lemu

Subjects
parasitic diseases, equipment and supplies, health care economics and organizations
Abstract

Additional file 9. PfHRP2 RDT and microscopy results in Pfhrp3 sequence isolates.

Published
2021
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92. Additional file 6 of Detection of high prevalence of Plasmodium falciparum histidine-rich protein 2/3 gene deletions in Assosa zone, Ethiopia: implication for malaria diagnosis

Author

Gezahegn Solomon Alemayehu, Blackburn, Kayla, Lopez, Karen, Cheikh Cambel Dieng, Lo, Eugenia, Janies, Daniel, and Lemu Golassa

Subjects
parasitic diseases, equipment and supplies
Abstract

Additional file 6: PfHRP2 RDT and microscopy-based results against PCR-based results of pfhrp2 and pfhrp3 their flanking regions.

Published
2021
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93. Additional file 8 of Genetic variation of Plasmodium falciparum histidine-rich protein 2 and 3 in Assosa zone, Ethiopia: its impact on the performance of malaria rapid diagnostic tests

Author

Alemayehu, Gezahegn Solomon, Messele, Alebachew, Blackburn, Kayla, Lopez, Karen, Lo, Eugenia, Janies, Daniel, and Golassa, Lemu

Abstract

Additional file 8. Baker repeats types and P. falciparum infection diagnosis . PfHRP2 sequence isolates classified into four groups according to the frequency number of types 2 × type 7 repeats: group A (≥100, very sensitive), group B (50-99, sensitive), group C (

Published
2021
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96. Additional file 2 of Genetic diversity of Anopheles stephensi in Ethiopia provides insight into patterns of spread

Author

Carter, Tamar E., Yared, Solomon, Getachew, Dejene, Spear, Joseph, Choi, Sae Hee, Samake, Jeanne N., Mumba, Peter, Dengela, Dereje, Yohannes, Gedeon, Chibsa, Sheleme, Murphy, Matthew, Dissanayake, Gunawardena, Flately, Cecilia, Lopez, Karen, Janies, Daniel, Zohdy, Sarah, Irish, Seth R., and Balkew, Meshesha

Subjects
Mathematics::General Mathematics, Astrophysics::Solar and Stellar Astrophysics, Quantitative Biology::Populations and Evolution, Computer Science::Computation and Language (Computational Linguistics and Natural Language and Speech Processing)
Abstract

Additional file 2: Figure S1. Pairwise Fst between study sites based on genetic distance. Fst values are plotted below the diagonal and P-values above. Color gradient based on Fst values (yellow = highest, blue = lowest). Figure S2. Pairwise Fst between study sites based on haplotype frequencies. Fst values are plotted below the diagonal and P-values above. Color gradient based on Fst values (yellow = highest, blue = lowest).

Published
2021
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99. Multidisciplinary Engagement of Diverse Students in Computer Science Education through Research Focused on Social Media COVID-19 Misinformation.

Author

Brown, David, Uddin, Mesbah, Al-hossami, Erfan, Janies, Daniel, Shaikh, Samira, and Zhuo Cheng

Subjects
COVID-19 pandemic, ONLINE education, STUDENT engagement, UNIVERSITIES & colleges, ENGINEERING education
Abstract

The ongoing COVID-19 pandemic has disrupted vital elements of personal and public health, society, and education. Increasingly with the viral pandemic, misinformation on health and science issues has been disseminated online. We developed an undergraduate training program focused on producing and presenting research to combat the rampant spread of this misinformation. Online misinformation represents a complex, multidisciplinary problem. Consequently, recruitment of students to the program was not exclusive to those from Computer Science or Science, Technology, Engineering, and Math (STEM) educational backgrounds. Participants were actively recruited from fields such as Linguistics, Social and Political sciences. This data analytics outreach program aimed to train educationally and demographically diverse undergraduate students in computational techniques and presentation skills through guided research regarding the current burst of misinformation. Over ten weeks, participants were instructed in an online curriculum covering five milestones: Python programming, data processing, machine learning with natural language processing, visualization, and presentation. Subsequently, participants were engaged in Computer Science research analyzing a real-world data set gathered from Twitter™ 1 between January and June 2020. Participants were organized into teams to investigate subtopics within the broader subject of misinformation: 1) detecting social media bot accounts, 2) identifying propaganda with computational methods, and 3) studying the discourse surrounding science preprints (i.e., papers that have been posted to the Internet but have not been peer reviewed). The program culminated in an exposition where each team presented research results to program officers, senior faculty, deans, government officials, and industry experts. Here we present the program curriculum, metrics of educational effectiveness, and feedback collected from participants. [ABSTRACT FROM AUTHOR]

Published
2022

100. A new species of Astropecten (Echinodermata: Asteroidea: Paxillosida: Astropectinidae) and a comparison of the Astropecten species from the Gulf of Mexico and the East Florida Shelf

Author

Cobb, Janessa C., Lawrence, John M., Herrera, Joan C., Lopez, Karen, and Janies, Daniel

Subjects
Astropectinidae, Asteroidea, Animalia, Paxillosida, Biodiversity, Taxonomy, Echinodermata
Abstract

Cobb, Janessa C., Lawrence, John M., Herrera, Joan C., Lopez, Karen, Janies, Daniel (2019): A new species of Astropecten (Echinodermata: Asteroidea: Paxillosida: Astropectinidae) and a comparison of the Astropecten species from the Gulf of Mexico and the East Florida Shelf. Zootaxa 4612 (3): 301-325, DOI: https://doi.org/10.11646/zootaxa.4612.3.1

Published
2019

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