51. Multiplex characterization of human pathogens including species and antibiotic-resistance gene identification
- Author
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Klemens Vierlinger, Herbert Wiesinger-Mayr, Christa Noehammer, Silvia Schoenthaler, Josefine Petzka, and Ivan Barišić
- Subjects
0301 basic medicine ,Microbiology (medical) ,DNA, Bacterial ,Microarray ,030106 microbiology ,Human pathogen ,Computational biology ,Drug resistance ,Microbial Sensitivity Tests ,Biology ,Microbiology ,Sensitivity and Specificity ,beta-Lactamases ,Bacterial genetics ,03 medical and health sciences ,Species Specificity ,Drug Resistance, Multiple, Bacterial ,RNA, Ribosomal, 16S ,Multiplex polymerase chain reaction ,Humans ,Multiplex ,Pathogen ,Bacteria ,Microarray analysis techniques ,General Medicine ,Microarray Analysis ,Molecular biology ,Anti-Bacterial Agents ,Multiplex Polymerase Chain Reaction - Abstract
The efficient medical treatment of infections requires detailed information about the pathogens involved and potential antibiotic-resistance mechanisms. The dramatically increasing incidence of multidrug-resistant bacteria especially highlights the importance of sophisticated diagnostic tests enabling a fast patient-customized therapy. However, the current molecular detection methods are limited to either the detection of species or only a few antibiotic-resistance genes.In this work, we present a human pathogen characterization assay using a rRNA gene microarray identifying 75 species comprising bacteria and fungi. A statistical classifier was developed to facilitate the automated species identification. Additionally, the clinically most important β-lactamases were identified simultaneously in a 100-plex reaction using padlock probes and the same microarray. The specificity and sensitivity of the combined assay was determined using clinical isolates. The detection limit was 10(5) c.f.u. ml(-1), recovering 89 % of the detectable β-lactamase-encoding genes specifically. The total assay time was less than 7 hand the modular character of the antibiotic-resistance detection allows the easy integration of further genetic targets. In summary, we present a fast, highly specific and sensitive multiplex pathogen characterization assay.
- Published
- 2015