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53. Multivariable association discovery in population-scale meta-omics studies

54. High-sensitivity pattern discovery in large, paired multi-omic datasets

56. A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1

58. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

59. Author response: Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

60. Global Chemical Impact of the Microbiome Includes Novel Bile Acid Conjugations

62. Human gut bacteria produce TH17-modulating bile acid metabolites

69. Human gut bacteria produce ΤΗ17-modulating bile acid metabolites.

72. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

77. The classroom microbiome and asthma morbidity in children attending three inner-city schools

78. Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis

79. Comparative genomics and genome biology of Campylobacter showae

80. Gut microbiome structure and metabolic activity in inflammatory bowel disease

81. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

82. Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

83. Host genetic variation and its microbiome interactions within the Human Microbiome Project

86. 634 - Gut Microbial Factors Implicated in Disease Progression and Treatment Response in Pediatric Ulcerative Colitis

88. Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer

89. Additional file 2: Figure S1. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

90. Additional file 5: Figure S3. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

91. Additional file 12: Figure S9. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

92. Additional file 8: Figure S5. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

93. Additional file 7: Figure S4. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

94. Additional file 4: Figure S2. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

95. Additional file 9: Figure S6. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

97. bioBakery: a meta’omic analysis environment

98. Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice

99. Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation

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