3,959 results on '"F, Rodrigues"'
Search Results
52. Green SPIONs as a novel highly selective treatment for leishmaniasis: an in vitro study against Leishmania amazonensis intracellular amastigotes
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Brunno R. F. Verçoza, Robson R. Bernardo, Luiz Augusto S. de Oliveira, and Juliany C. F. Rodrigues
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coconut water ,leishmaniasis ,leishmania amazonensis ,nanomedicine ,spions ,Technology ,Chemical technology ,TP1-1185 ,Science ,Physics ,QC1-999 - Abstract
The main goal of this work was to evaluate the therapeutic potential of green superparamagnetic iron oxide nanoparticles (SPIONs) produced with coconut water for treating cutaneous leishmaniasis caused by Leishmania amazonensis. Optical and electron microscopy techniques were used to evaluate the effects on cell proliferation, infectivity percentage, and ultrastructure. SPIONs were internalized by both parasite stages, randomly distributed in the cytosol and located mainly in membrane-bound compartments. The selectivity index for intracellular amastigotes was more than 240 times higher compared to current drugs used to treat the disease. The synthesized SPIONs showed promising activity against Leishmania and can be considered a strong candidate for a new therapeutic approach for treating leishmaniases.
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- 2023
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53. Gene Expression Divergence in Eugenia uniflora Highlights Adaptation across Contrasting Atlantic Forest Ecosystems
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Andreia C. Turchetto-Zolet, Fabiano Salgueiro, Frank Guzman, Nicole M. Vetö, Nureyev F. Rodrigues, Natalia Balbinott, Marcia Margis-Pinheiro, and Rogerio Margis
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Neotropics ,Atlantic Forest ,abiotic stress ,local adaptation ,Myrteae tribe ,environmental changes ,Botany ,QK1-989 - Abstract
Understanding the evolution and the effect of plasticity in plant responses to environmental changes is crucial to combat global climate change. It is particularly interesting in species that survive in distinct environments, such as Eugenia uniflora, which thrives in contrasting ecosystems within the Atlantic Forest (AF). In this study, we combined transcriptome analyses of plants growing in nature (Restinga and Riparian Forest) with greenhouse experiments to unveil the DEGs within and among adaptively divergent populations of E. uniflora. We compared global gene expression among plants from two distinct ecological niches. We found many differentially expressed genes between the two populations in natural and greenhouse-cultivated environments. The changes in how genes are expressed may be related to the species’ ability to adapt to specific environmental conditions. The main difference in gene expression was observed when plants from Restinga were compared with their offspring cultivated in greenhouses, suggesting that there are distinct selection pressures underlying the local environmental and ecological factors of each Restinga and Riparian Forest ecosystem. Many of these genes engage in the stress response, such as water and nutrient transport, temperature, light intensity, and gene regulation. The stress-responsive genes we found are potential genes for selection in these populations. These findings revealed the adaptive potential of E. uniflora and contributed to our understanding of the role of gene expression reprogramming in plant evolution and niche adaptation.
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- 2024
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54. Multimodal Sentiment Classifier Framework for Different Scene Contexts
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Nelson Silva, Pedro J. S. Cardoso, and João M. F. Rodrigues
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sentiment analysis ,affective computing ,human-centered AI ,Multimodal Sentiment Classifier ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Sentiment analysis (SA) is an effective method for determining public opinion. Social media posts have been the subject of much research, due to the platforms’ enormous and diversified user bases that regularly share thoughts on nearly any subject. However, on posts composed by a text–image pair, the written description may or may not convey the same sentiment as the image. The present study uses machine learning models for the automatic sentiment evaluation of pairs of text and image(s). The sentiments derived from the image and text are evaluated independently and merged (or not) to form the overall sentiment, returning the sentiment of the post and the discrepancy between the sentiments represented by the text–image pair. The image sentiment classification is divided into four categories—“indoor” (IND), “man-made outdoors” (OMM), “non-man-made outdoors” (ONMM), and “indoor/outdoor with persons in the background” (IOwPB)—and then ensembled into an image sentiment classification model (ISC), that can be compared with a holistic image sentiment classifier (HISC), showing that the ISC achieves better results than the HISC. For the Flickr sub-data set, the sentiment classification of images achieved an accuracy of 68.50% for IND, 83.20% for OMM, 84.50% for ONMM, 84.80% for IOwPB, and 76.45% for ISC, compared to 65.97% for the HISC. For the text sentiment classification, in a sub-data set of B-T4SA, an accuracy of 92.10% was achieved. Finally, the text–image combination, in the authors’ private data set, achieved an accuracy of 78.84%.
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- 2024
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55. Antimicrobial Efficacy of Chemomechanical Carie Removal Agents—A Systematic Integrative Review
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Adélaïde Janvier, Marie Maziere, Célia F. Rodrigues, Ana Paula Lobo, and Paulo Rompante
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dental caries ,minimal invasive ,chemomechanical caries removal system ,antimicrobial efficacy ,Biology (General) ,QH301-705.5 - Abstract
Background: Dental caries is the most common oral disease in the world. When treatable, the drilling method continues to be used. This technique has its disadvantages because it is invasive and nonspecific. Chemomechanical carious tissue removal agents (CCRAs) such as Carisolv™ or Papacarie® are non-invasive products that allow for the specific elimination of infected dentin. On the other hand, cariogenic bacteria are largely responsible for the initiation and development of lesions. Objectives: The aim is to analyze whether CCRAs have a relevant antimicrobial effect on cariogenic bacteria. Methods: A bibliographic search strategy was carried out in online databases using PRISMA 2020. The evaluation of the antibacterial efficacy of CCRAs was carried out through the analysis of the reduction in CFUs of cariogenic bacteria, and the presence of bacterial deposits, TVC, SVC and LVC by comparison with conventional drilling methods. Results: The results showed that the percentage of reduction in TVC, SVC and LVC for each agent is mostly high, but not significantly different from mechanical methods. The best results were found with CCRAs when compared to polymeric drills. The results also showed that there is a lack of methodological standardization. Conclusions: CCRAs have been shown to have a relevant antimicrobial effect on cariogenic bacteria; however, more studies need to be carried out using standardized methodologies.
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- 2024
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56. IL-1 Receptor Contributes to the Maintenance of the Intestinal Barrier via IL-22 during Obesity and Metabolic Syndrome in Experimental Model
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Melissa S. G. Machado, Vanessa F. Rodrigues, Sara C. Barbosa, Jefferson Elias-Oliveira, Ítalo S. Pereira, Jéssica A. Pereira, Thaílla C. F. Pacheco, and Daniela Carlos
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IL-1R1 ,obesity ,metabolic syndrome ,IL-22 ,ILC3 ,gut permeability ,Biology (General) ,QH301-705.5 - Abstract
Intestinal permeability and bacterial translocation are increased in obesity and metabolic syndrome (MS). ILC3 cells contribute to the integrity of intestinal epithelium by producing IL-22 via IL-1β and IL-23. This study investigates the role of IL-1R1 in inducing ILC3 cells and conferring protection during obesity and MS. For this purpose, C57BL/6 wild-type (WT) and IL-1R1-deficient mice were fed a standard diet (SD) or high-fat diet (HFD) for 16 weeks. Weight and blood glucose levels were monitored, and adipose tissue and blood samples were collected to evaluate obesity and metabolic parameters. The small intestine was collected to assess immunological and junction protein parameters through flow cytometry and RT-PCR, respectively. The intestinal permeability was analyzed using the FITC-dextran assay. The composition of the gut microbiota was also analyzed by qPCR. We found that IL-1R1 deficiency exacerbates MS in HFD-fed mice, increasing body fat and promoting glucose intolerance. A worsening of MS in IL-1R1-deficient mice was associated with a reduction in the ILC3 population in the small intestine. In addition, we found decreased IL-22 expression, increased intestinal permeability and bacterial translocation to the visceral adipose tissue of these mice compared to WT mice. Thus, the IL-1R1 receptor plays a critical role in controlling intestinal homeostasis and obesity-induced MS, possibly through the differentiation or activation of IL-22-secreting ILC3s.
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- 2024
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57. Harnessing AI and NLP Tools for Innovating Brand Name Generation and Evaluation: A Comprehensive Review
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Marco Lemos, Pedro J. S. Cardoso, and João M. F. Rodrigues
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brandability ,brand name generation ,brand name evaluation ,artificial intelligence ,natural language processing ,Technology ,Science - Abstract
The traditional approach of single-word brand names faces constraints due to trademarks, prompting a shift towards fusing two or more words to craft unique and memorable brands, exemplified by brands such as SalesForce© or SnapChat©. Furthermore, brands such as Kodak©, Xerox©, Google©, Häagen-Dazs©, and Twitter© have become everyday names although they are not real words, underscoring the importance of brandability in the naming process. However, manual evaluation of the vast number of possible combinations poses challenges. Artificial intelligence (AI), particularly natural language processing (NLP), is emerging as a promising solution to address this complexity. Existing online brand name generators often lack the sophistication to comprehensively analyze meaning, sentiment, and semantics, creating an opportunity for AI-driven models to fill this void. In this context, the present document reviews AI, NLP, and text-to-speech tools that might be useful in innovating the brand name generation and evaluation process. A systematic search on Google Scholar, IEEE Xplore, and ScienceDirect was conducted to identify works that could assist in generating and evaluating brand names. This review explores techniques and datasets used to train AI models as well as strategies for leveraging objective data to validate the brandability of generated names. Emotional and semantic aspects of brand names, which are often overlooked in traditional approaches, are discussed as well. A list with more than 75 pivotal datasets is presented. As a result, this review provides an understanding of the potential applications of AI, NLP, and affective computing in brand name generation and evaluation, offering valuable insights for entrepreneurs and researchers alike.
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- 2024
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58. Are Mouthwashes Really Effective against Candida spp.?
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Marie Maziere, Paulo Rompante, José Carlos Andrade, and Célia F. Rodrigues
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antifungal agents ,oral candidiasis ,mouthwash ,chlorhexidine digluconate ,cetylpyridinium chloride ,biomedical and dental materials ,Biology (General) ,QH301-705.5 - Abstract
Oral candidiasis is an opportunistic infection caused by fungi of the genus Candida. Nystatin, fluconazole, and miconazole are the most widely used antifungal drugs in dentistry, but in recent years, they have been shown to be less effective due to the increase in the resistance to antifungal drugs. The growing challenge of antifungal resistance emphasizes the importance of exploring not only alternative strategies in the fight against Candida spp. infections but also supportive treatment for pharmacological treatment for oral candidiasis. This review aims to evaluate and compare the in vitro reports on antifungal efficacy against Candida spp. exhibited by mouthwashes distributed on the European market. The research question was elaborated through the PEO framework recommended by PRISMA 2020. A bibliographic search strategy was developed for the scientific online databases Pubmed and ScienceDirect. According to the eligibility criteria, 21 papers were included in this study over a 27-year period. Mouthwashes containing chlorhexidine digluconate, cetylpyridinium chloride, hexetidine, and fluorine compounds among others, and natural antimicrobials, such as menthol, thymol, eucalyptol, and Glycyrrhiza glabra extracts, have demonstrated antifungal effectiveness. Nonetheless, the methodological variance introduces ambiguity concerning the comparative efficacy of distinct molecules or mouthwash formulations and complicates the evaluation and the comparison of results between studies. Some mouthwashes commercially available in Europe have the potential to be used in anti-Candida therapy and prevention since they have shown antifungal effect.
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- 2024
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59. Contribution by Giant petrels and Brown skuas to soil phosphatization in Harmony Point - Maritime Antarctica
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WILLIAM F. RODRIGUES, FÁBIO S. DE OLIVEIRA, CARLOS ERNESTO G.R. SCHAEFFER, MARIÂNGELA G.P. LEITE, and ISABELA C. TORRES
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Ornithogenic soils ,Nests of Giant petrels and Brown skuas ,Non-penguin nidification ,Nelson Island ,Science - Abstract
Abstract This research was conducted for the purpose to evaluate the contribution Giant petrels and Brown skuas nestings in the formation of ornithogenic soils by the phosphatization process in Harmony Point, Maritime Antarctic. Ten nests were selected to collect topsoil samples (0-20 cm), from 0 m up to 20 m away, with regular spacing of 2 m. The analysis of the samples included the physical, chemical, mineralogical and geochemical analyzes. Phosphate minerals were identified. The presence of high content of some trace elements, such as Zn, Cu and Sr is associated with the bird’s excrements. Total-P and bioavailable-P recorded higher levels. This result demonstrates the importance of the time factor in the bird’s nesting, as well as in the development of the soil in these soil-forming environment. Phosphatization in these areas is not restricted to the specific location of the nest, since high values of P have been identified at distances between 8 and 12 m, from de nest’s top. This suggests the transport of P rich solutions and phosphatized material along fractures by the freeze-thaw cycles, contributing to increase the geographical expression of this phenomenon in this ice-free area, consequently the development of soils and the establishment of vegetation.
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- 2024
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60. Correction: Mindfulness-Based Cognitive Therapy for Treatment-Resistant Depression: A protocol for systematic review and meta-analysis.
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Michele F Rodrigues, Larissa Junkes, Jose Appolinario, and Antonio E Nardi
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Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0306227.].
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- 2024
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61. Spectroelectrochemistry for determination of the redox potential in heme enzymes: Dye-decolorizing peroxidases
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Catarina Barbosa, Carolina F. Rodrigues, Nikola Lončar, Lígia O. Martins, Smilja Todorovic, and Célia M. Silveira
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Heme proteins ,Redox potential ,Spectroelectrochemistry ,Dye decolorizing peroxidases ,Biochemistry ,QD415-436 ,Genetics ,QH426-470 - Abstract
Dye-decolorizing peroxidases (DyPs) are heme-containing enzymes that are structurally unrelated to other peroxidases. Some DyPs show high potential for applications in biotechnology, which critically depends on the stability and redox potential (E°') of the enzyme. Here we provide a comparative analysis of UV–Vis- and surface-enhanced resonance Raman-based spectroelectrochemical methods for determination of the E°' of DyPs from two different organisms, and their variants generated targeting E°' upshift. We show that substituting the highly conserved Arginine in the distal side of the heme pocket by hydrophobic amino acid residues impacts the heme architecture and redox potential of DyPs from the two organisms in a very distinct manner. We demonstrate the advantages and drawbacks of the used spectroelectrochemical approaches, which is relevant for other heme proteins that contain multiple heme centers or spin populations.
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- 2024
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62. Mindfulness-Based Cognitive Therapy for Treatment-Resistant Depression: A protocol for systematic review and meta-analysis.
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Michele F Rodrigues, Larissa Junkes, Jose Appolinario, and Antonio E Nardi
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Medicine ,Science - Abstract
BackgroundMajor Depressive Disorder (MDD) is a global health issue, and a significant portion of individuals with MDD experience Treatment-Resistant Depression (TRD), characterized by the lack of response to adequately trialed antidepressant medication and therapy. This systematic review aims to investigate the effectiveness of Mindfulness-Based Cognitive Therapy (MBCT) as an intervention for individuals with TRD.Materials and methodsWe will conduct a thorough search for publications of randomized clinical trials and quasi-experimental studies in MEDLINE, Embase, PsycINFO, Web of Science databases, and ClinicalTrials.gov. Furthermore, reference lists of included studies will be manually screened for additional relevant articles, with no restrictions on language or publication date. The search will be conducted from the inception of the databases until June 2024. Our PICO-guided research questions are: (1) In adults with Treatment-Resistant Depression, is MBCT more effective than standard care or other active treatments in reducing depressive symptoms? (2) In adults with Treatment-Resistant Depression, does MBCT demonstrate a comparable safety profile to standard care or other active treatments? The quality of the included studies will be assessed independently using the Cochrane Risk of Bias Tool (RoB 2). This study seeks to evaluate the effectiveness and tolerability of Mindfulness-Based Cognitive Therapy as an intervention for Treatment-Resistant Depression, and will employ the Grading of Recommendations Assessment, Development, and Evaluation (GRADE) methodology to appraise the confidence in the evidence.Prospero registrationProspero registration ID: CRD42023411978. Registered on April 07, 2023.
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- 2024
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63. Friction riveting of FR4 substrates for printed circuit boards: Influence of process parameters on process temperature development and joint properties
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Camila F. Rodrigues, Lucian Blaga, and Benjamin Klusemann
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Printed circuit board ,FR4 ,Friction riveting ,Hybrid materials ,Joint formation ,Mining engineering. Metallurgy ,TN1-997 - Abstract
This work investigates the influence of Friction Riveting processing conditions on FR4-PCB substrate/AA2024 rivet joints in terms of process temperature evolution, joint formation, and joint physical-chemical and mechanical properties. The joints were manufactured using 4 mm diameter AA-2024-T3 rivets and FR4 laminates of 1.5 mm thickness with single or double copper-clad layers. The evolution of process temperature evolution was recorded on the FR4 substrate surface and correlated with the resulting joint formation. Most joints obtained with double copper clad layers developed process temperatures above 300 °C, whereas joints produced with a single copper clad presented slightly lower temperatures, but still above 250 °C. Rivet anchoring was achieved for both FR4 material combinations in the configuration of a single-base laminate, as well as two and even three overlapped laminates. Thermogravimetric analyses revealed that above 300 °C intensive thermal degradation occurs on FR4 materials (with 30% mass change), followed by decomposition, resulting in non-uniform heat distribution throughout the thickness. The joint ultimate tensile force was higher for double copper-clad layers and the joints achieved within more than one laminate, showing higher anchoring efficiency.
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- 2023
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64. Synthesis of delafossite CuCrO2 via solution combustion method and its acid functionalization for biodiesel production
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M. C. Viegas, G. P. de Figueredo, S. F. Rodrigues, A. A. Cabral, M. A. M. Castro, and M. M. Oliveira
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delafossite ,solution combustion synthesis ,heterogeneous catalyst ,transesterification reaction ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Abstract CuCrO2 was synthesized by solution combustion synthesis (SCS) and applied as a heterogeneous catalyst to produce soybean biodiesel. The combustion reaction was carried out using urea as a fuel, and copper (II) and chromium (III) nitrates as precursors. After the powders’ obtention, these were calcined and functionalized in an acidic medium. The powders were characterized by thermogravimetry (TG), X-ray diffraction (XRD), scanning electron microscopy (SEM), and infrared spectroscopy (IR) techniques. The TG curve revealed that the formation of the CuCrO2 in the combustion reaction remained stable up to 1000 °C. The XRD results confirmed the formation of the CuCrO2 compound. The SEM images showed that the crystallinity of the samples increased after the calcination process. The IR spectra showed the presence of delafossite characteristic bands. After the transesterification reaction, biodiesel was obtained with a yield of around 80%. Thus, catalysts based on delafossite synthesized through the combustion method and functionalized showed to be promising for the transesterification reaction of vegetable oils.
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- 2023
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65. Evaluation of Power Transformer Thermal Performance and Optical Sensor Positioning Using CFD Simulations and Temperature Rise Test.
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Tales F. Rodrigues, Leonardo H. Medeiros, Micael M. Oliveira, Gabriel C. Nogueira, Vitor Cristiano Bender, Tiago Bandeira Marchesan, Carlos Eduardo Guex Falcão, and Marco Antônio Marin
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- 2023
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66. Age-related accumulation of B-1 cell progenitors in mice reflects changes in miR15a/16-1 expression and radioresistance capacity
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Olívia F Souza, Vivian C de Oliveira, Gabriel J. F. Rodrigues, Lucas V. S. Costa, Fernanda Corado, and Ana F. Popi
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B-1 cell progenitor ,miR15a/16-1 ,Chronic Lymphocytic Leukemia ,Apoptosis ,Radioresistance ,Diseases of the blood and blood-forming organs ,RC633-647.5 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Hyperproliferative diseases such as Chronic Lymphocytic Leukemia (CLL) and Systemic Lupus Erythematosus (SLE) are potentially related to some disturbance in the apoptosis pathway, specifically in B-1a cells (CD5+). Accumulation of B-1a cells in lymphoid organs, bone marrow or periphery is observed in some leukemia experimental murine models along aging. It is known that aging also increases the healthy B-1 cell population. However, it is not yet clear if it happens due to self-renewal of mature cells or proliferation of progenitor cells. Herein we demonstrated that the B-1 cell precursor population (B-1p) from bone marrow of middle-aged mice is higher than from young mice. Also, these aged cells are more resistant to irradiation and have downregulation of microRNA15a/16. Alterations in these microRNAs expression and in Bcl-2 regulation were already described in human hematological malignancies and new therapeutically approaches focus on that axis. This finding could explain the early events related to cell transformation during aging and correlate with beginning of symptoms in hyperproliferative diseases. Moreover, studies have already reported these pro-B-1 as a contributor to the origin of other leukemia (Acute Myeloid Leukemia - AML). Our results point to a possible relation between B-1 cell precursors and hyperproliferation during aging. We hypothesized that this population could be maintained until the mature status of the cell or reveal changes that result in re-activation of precursor in adult bone marrow, culminating in accumulation of B-1 cells later. Based on this, B-1 cell progenitor could represent an origin for B cell malignancies and a new candidate target to diagnose and treatments in the future.
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- 2023
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67. Gravity complexes as a focus of seafloor fluid seepage: the Rio Grande Cone, SE Brazil
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M. Ketzer, D. Praeg, A. H. Augustin, L. F. Rodrigues, A. K. Steiger, M. Rahmati-Abkenar, A. R. Viana, D. J. Miller, A. Malinverno, G. R. Dickens, and J. A. Cupertino
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Medicine ,Science - Abstract
Abstract Seafloor methane emissions can affect Earth’s climate and ocean chemistry. Vast quantities of methane formed by microbial decomposition of organic matter are locked within gas hydrate and free gas on continental slopes, particularly in large areas with high sediment accumulations such as deep-sea fans. The release of methane in slope environments has frequently been associated with dissociation of gas hydrates near the edge of the gas hydrate stability zone on the upper slope, with discharges in greater water depths less understood. Here we show, using data from the Rio Grande Cone (western South Atlantic), that the intrinsic, gravity-induced downslope collapse of thick slope sediment accumulations creates structures that serve as pathways for gas migration, unlocking methane and causing seafloor emissions via giant gas flares in the water column. The observed emissions in the study region (up to 310 Mg year−1) are three times greater than estimates for the entire US North Atlantic margin and reveal the importance of collapsing sediment accumulations for ocean carbon cycling. Similar outgassing systems on the Amazon and Niger fans suggest that gravity tectonics on passive margins is a common yet overlooked mechanism driving massive seafloor methane emissions in sediment-laden continental slopes.
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- 2023
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68. Review of Ceramic Composites in Aeronautics and Aerospace: A Multifunctional Approach for TPS, TBC and DBD Applications
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Kateryna O. Shvydyuk, João Nunes-Pereira, Frederico F. Rodrigues, and Abílio P. Silva
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thermal protection systems ,thermal barrier coatings ,dielectric barrier discharge ,structural ceramics ,multifunctional ceramics ,Technology ,Chemical technology ,TP1-1185 - Abstract
The quest for increased performance in the aeronautical and aerospace industries has provided the driving force and motivation for the research, investigation, and development of advanced ceramics. Special emphasis is therefore attributed to the ability of fine ceramics to fulfill an attractive, extreme, and distinguishing combination of application requirements. This is impelled by ensuring a suitable arrangement of thermomechanical, thermoelectric, and electromechanical properties. As a result, the reliability, durability, and useful lifetime extension of a critical structure or system are expected. In this context, engineered ceramic appliances consist of three main purposes in aeronautical and aerospace fields: thermal protection systems (TPS), thermal protection barriers (TBC), and dielectric barrier discharge (DBD) plasma actuators. Consequently, this research provides an extensive discussion and review of the referred applications, i.e., TPS, TBC, and DBD, and discusses the concept of multifunctional advanced ceramics for future engineering needs and perspectives.
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- 2023
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69. Ocean-atmosphere turbulent CO2 fluxes at Drake Passage and Bransfield Strait
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CELINA CÂNDIDA F. RODRIGUES, MARCELO F. SANTINI, LUCIANA S. LIMA, UESLEI ADRIANO SUTIL, JONAS T. CARVALHO, MYLENE JEAN CABRERA, ELIANA B. ROSA, JACOB W. BURNS, and LUCIANO P. PEZZI
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carbon flux ,sea-air interaction ,carbon sinks ,Antarctic Peninsula ,Science - Abstract
Abstract The oceans play an important role in mitigating climate change by acting as large carbon sinks, especially at high latitude regions. The Southern Ocean plays a major role in the global carbon dioxide (CO2) budget. This work aims to investigate the behavior of turbulent CO2 fluxes and quantify it under different atmospheric and oceanic conditions in the Drake Passage and Bransfield Strait regions on high spatiotemporal resolutions when compared with traditional CO2 fluxes estimations. The atmospheric stability condition was used to corroborate the description of CO2 fluxes. In situ, satellite, and reanalysis data from 08 to 22 November 2018, were used in this work. The Bransfield Strait uptaked 38.59% more CO2 than the Drake Passage due to the cold and fresh waters, allied to the influence of glacial meltwater dilution. Which increased the CO2 solubility, directing the CO2 fluxes to the ocean. The Bransfield Strait had predominantly stable atmospheric conditions, which contributed to this region acting as a CO2 sink. The Drake Passage, on average, behaved as a CO2 sink, mainly due to physical characteristics. This research contributes to a better understanding of the Southern Ocean’s role in the global carbon balance on scales that are very difficult to monitor.
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- 2023
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70. SOIL-LANDSCAPE RELATIONSHIP IN A WATERSHED LOCATED ON PLEISTOCENIC TERRACES AND FLUVIO-LAGUNARIAN SEDIMENTS IN MUNICIPALITY OF RECIFE, BRAZIL
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Anildo M. Caldas, Fernando C. Rolim Neto, Roberto da Boa Viagem Parahyba, Marcus M. Corrêa, and Adriana de C. F. Rodrigues
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SiBCS ,Ferralsols ,Barreiras group ,soil map ,Agriculture (General) ,S1-972 - Abstract
ABSTRACT In the Prata watershed there are units corresponding to the Pleistocene Terraces and the Fluvium-Lagoon Sediments. This watershed is inserted almost entirely in the area of plateaus (Tabuleiros) with altitudes of 10 to 100 meters, and in areas with altitudes of 2 to 10 meters in the area of floodplains and fluvio-lagoon terraces. The present work aimed to characterize and classify soils in the Brazilian Soil Classification System - SiBCS and correlate them with the IUSS Working Group WRB-FAO (in parentheses), besides evidence some soil-landscape relations, that occur in Pleistocene terraces and fluvium-lagoon sediments in the Prata watershed, located in the ecological reserve of Dois Irmãos State Park in Recife – PE, Brazil. Soil samples were used to perform physical, chemical and mineralogical analysis in laboratory. Watershed delimitation, Digital Elevation Model (DEM), slope map, soil map and slope x soil map were obtained and studied. The soils are quite acidic and have a very low natural fertility, with the Latossolos (Ferralsols) predominating in the landscape. The silt and clay fractions of the studied Argissolos (Acrisols) and Latossolos (Ferralsols) presented quartz and kaolinite as the main component. In the profile of Neossolo Quartzarênico (Arenosols) only quartz was identified as a component of the silt and clay fractions. The kaolinitic mineralogy of the clay fraction is consistent with the environment of its formation, that is, hot and humid. There is no relationship between the colors of soils and their exposure to the sun on the slopes where they occur. The occurrence of a sandy and whitish horizon between the litter and the A horizon, is not foreseen in the norms and criteria adopted in the Brazilian Soil Classification System - SiBCS.
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- 2023
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71. Global methylation in ‘Valencia’ orange seedlings associated with rootstocks and Huanglongbing
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M. G. F. Rodrigues, E. S. Nakanishi, R. V. G. Soutello, and F. O. N. H. Diniz
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epigenetics ,citrus culture ,phenotypic plasticity ,Science ,Biology (General) ,QH301-705.5 ,Zoology ,QL1-991 ,Botany ,QK1-989 - Abstract
Abstract Citrus farming is one of the main activities that contributed to the Brazilian trade balance, with citrus seedling being the most important input in the formation of orchards to guarantee high productivity and fruit quality, which fundamentally depends on the chosen genetics. The present study aimed to analyze the existence of epigenetic variability in ‘Valencia’ orange plants on rootstocks, associated or not with HLB, through the quantification of the global methylation of its genome, in order to support works on genetic improvement and crop production. For this purpose, this work was carried out in greenhouse in a completely randomized experimental design, with 5 treatments and 6 replicates per treatment, each seedling being considered a replicate, namely: T1 = “Valencia” orange grafted onto “Rangpur” lemon, inoculated with HLB; T2 = “Valencia” orange grafted onto “Swingle” citrumelo, inoculated with HLB; T3 = “Valencia” orange grafted onto “Rangpur” lemon, without HLB inoculation ; T4 = “Valencia” orange grafted onto “Swingle” citrumelo, without HLB inoculation ; T5 = “Valencia” orange in free standing. The DNA was extracted from leaves and the ELISA test (Enzyme-Linked Immunosorbent Assay) was carried out, based on the use of receptors sensitive to 5-mC., to measure the relative quantification of global methylation between genomic orange DNAs . Since the control treatment (T5) consists of “Valencia” orange in free standing, it could be inferred that both the normal grafting technique in the seedling formation process and the inoculation of buds infected with HLB are external factors capable of changing the methylation pattern in the evaluated plants, including the DNA demethylation process, causing an adaptive response in association with the expression of genes previously silenced by genome methylation.
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- 2023
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72. 1305 Agreement and reliability of an automated PD-L1 tumor proportion scoring algorithm in non-small cell lung cancer (NSCLC)
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Inti Zlobec, David Dorward, Samuel Pattle, Daniela F Rodrigues, Christina Neppl, Tereza Losmanová, Rebecca Wyatt, Donna Mulkern, Raphaël Oberson, Stefan Reinhard, Therese Waldburger, and Peter Caie
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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73. Removing heavy metal ions from wastewater by Chlorella sorokiniana coupled to manganese-doped magnetic ferrite nanoparticles
- Author
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Louie A. Lapeñas, Janire Peña-Bahamonde, Lúrima Uane Soares Faria, Mark Daniel G. de Luna, and Debora F. Rodrigues
- Subjects
Chlorella sorokiniana ,Manganese ferrite ,Biosorption ,Heavy metal removal ,Hazardous substances and their disposal ,TD1020-1066 - Abstract
In this study, we investigated the benefit of combining Chlorella sorokiniana with manganese-containing ferrite nanoparticles (NPs) for heavy metal removal and cell harvesting. Our results demonstrate that the combination of non-toxic nanoparticles significantly enhances the heavy metal removal capacity of C. sorokiniana without affecting its growth. The microalgae combined with NPs was able to sequester Cr6+, Co2+, and Ni2+ from aqueous solutions and could remove these metals at a higher adsorption capacity and within a relatively short time than their individual counterparts, indicating a synergistic effect between the algal cells and the nanomaterials, where bioadsorption and chemisorption were the main players. Both biosorption and chemisorption capacities were found to be the highest for single-metal systems and decreased when coexisting ions were present in the solution. The adsorption of the heavy metals evaluated was better described by the pseudo-second order model than the pseudo-first order model, indicating that chemisorption dominated over physisorption. These characteristics suggest that the combination of biosorbents with nanosorbents is a promising approach for the treatment of water contaminated with heavy metals making this process more efficient, economical, sustainable, and clean.
- Published
- 2023
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74. Geochemistry and metagenomics analyses of bacterial community structure in selected waste dumpsites in Lagos Metropolis, Nigeria
- Author
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Salametu Saibu, Sunday A. Adebusoye, Ganiyu O. Oyetibo, and Debora F. Rodrigues
- Subjects
soil ,dumpsite ,bacterial diversity ,persistent organic pollutants ,heavy metals ,Environmental sciences ,GE1-350 - Abstract
Dumpsites are reservoirs of persistent organic pollutants (POPs) and heavy metals (HMs), constituting environmental hazards to humanity. Autochthonous microorganisms in dumpsites exhibit various degrees of responses to contaminants. Unfortunately, there is a dearth of information on the types and concentration of pollutants and the array of microorganisms in these dumpsites which may play important roles in the metabolism of such pollutants or other community processes. Therefore, determining the microbial community structure in such contaminated sites across a municipality is essential for profiling the taxa that would serve as consensus degraders of the pollutants. In this study, soil samples from three dumpsites (Cele, CS; Solous, SS; and Computer Village, CVS) were characterized for geochemical properties using GC-MS, MP-AES, and other analytical protocols, while the dynamics of bacterial communities were evaluated based on their 16S rRNA gene barcodes. A significant difference in the bacterial communities was observed among the dumpsites in relation to the extent of pollution caused by POPs and HMs. CVS, with the highest HM contamination, was rich in Actinobacteria (41.7%) and Acidobacteria (10.2%), in contrast to CS and SS. Proteobacteria (34.1%) and Firmicutes (20%) were the dominant phyla in CS (highest POP contamination), while Bacteroidetes (45.5%) and Proteobacteria (39.9%) were dominant in SS soil. Bacillus was the dominant genus in the most polluted dumpsite. Canonical correspondence analysis revealed that polycyclic aromatic hydrocarbons (PAHs) and HMs shaped the structure of the bacterial operational taxonomic units (OTUs) in the most polluted dumpsite. Out of a total of 706 OTUs, 628 OTUs exhibited a significant correlation (>50%) with benzo(b)fluoranthene, azobenzene, dibenzofurans, pyrene, dibenzo(a,l)pyrene, Cu, and Zn. In particular, Proteobacteria (Achromobacter sp. and Serratia sp.), Bacteroidetes (Zhouia sp.), and Firmicutes (Bacillus sp.) were suggested to be pivotal to the ecophysiology of dumpsite soils contaminated with POPs and HMs. The results generally underscored the importance of metagenomic and physicochemical analyses of polluted systems in enabling correlations for useful prediction of drivers of such ecosystems. This will further improve our understanding of the metabolic potential and adaptation of organisms in such systems.
- Published
- 2023
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- View/download PDF
75. Full Motion Focus: Convolutional Module for Improved Left Ventricle Segmentation Over 4D MRI.
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Daniel Mario de Lima, Catharine V. Graves, Marco A. Gutierrez 0001, Bruno Brandoli, and José F. Rodrigues Jr.
- Published
- 2022
- Full Text
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76. Diabetic Retinopathy Detection Using Convolutional Neural Networks for Mobile Use.
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Meltem Esengönül, Anselmo Cardoso de Paiva, João M. F. Rodrigues, and António Cunha
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- 2022
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77. Solving Combinatorial Problems via the Random Exploration of the Search Space: An Experimental Approach for Fast Decision Making.
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Cristiano M. Silva, Fernanda S. H. Sumika, Daniel Ludovico Guidoni, Leonardo Alvarenga L. Santos, João Fernando Machry Sarubbi, Somayeh Mokhtari, Matheus F. Rodrigues Santos, and José Marcos Silva Nogueira
- Published
- 2022
- Full Text
- View/download PDF
78. Feasibility Study on Automatic Surgical Phase Identification based on Speech Recognition for Laparoscopic Prostatectomy.
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Marcos Fernández-Rodríguez, Nuno F. Rodrigues, Pedro Morais, Bruno Oliveira 0002, L. R. Buschle, Jorge Correia-Pinto, Estevão Lima, and João L. Vilaça
- Published
- 2022
- Full Text
- View/download PDF
79. Facial Emotions Classification Supported in an Ensemble Strategy.
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Rui Novais, Pedro J. S. Cardoso, and João M. F. Rodrigues
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- 2022
- Full Text
- View/download PDF
80. Decision-Making Game for Simulation of Breast Cancer Biopsy and Treatment.
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Rafael G. Barbosa, Maria Andréia F. Rodrigues, Thiago R. C. de Oliveira, Samuel Pessoa Madeira, Juliana Amaral De Figueiredo, Marclesson S. Alves, Maria Angelina S. Medeiros, and Ricardo L. Cabral Filho
- Published
- 2022
- Full Text
- View/download PDF
81. Design principles for cognitive and physical rehabilitation of ICU patients using Virtual Reality (VR).
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Inês Oliveira, Alexandre Afonso, Eva Oliveira, João Coimbra, and Nuno F. Rodrigues
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- 2022
- Full Text
- View/download PDF
82. An Interactive Story Decision-Making Game for Mental Health Awareness.
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Maria Andréia F. Rodrigues, Thiago R. C. de Oliveira, Daniel L. de Figueiredo, Edilson O. Maia Neto, Alexandre A. A. Akao, Guilherme H. M. de Lima, Vitoria L. N. Silva, and Anderson L. Karl
- Published
- 2022
- Full Text
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83. Virtual Reality Video Game for Depression Awareness.
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Francisco Morim, Eva Oliveira, Cátia Braga, and Nuno F. Rodrigues
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- 2022
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84. Emotion Classification from Speech by an Ensemble Strategy.
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Rui Novais, Pedro J. S. Cardoso, and João M. F. Rodrigues
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- 2022
- Full Text
- View/download PDF
85. AttentionHCare: Advances on computer-aided medical prognosis using attention-based neural networks.
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Pedro H. F. De Barros and Jose F. Rodrigues
- Published
- 2022
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86. Eris: Fault Injection and Tracking Framework for Reliability Analysis of Open-Source Hardware.
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Shubham Nema, Justin Kirschner, Debpratim Adak, Sapan Agarwal, Ben Feinberg, Arun F. Rodrigues, Matthew J. Marinella, and Amro Awad
- Published
- 2022
- Full Text
- View/download PDF
87. Variational Bayesian analysis of survival data using a log-logistic accelerated failure time model.
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Chengqian Xian, Camila P. E. de Souza, Wenqing He, Felipe F. Rodrigues, and Renfang Tian
- Published
- 2024
- Full Text
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88. Corrigendum: Severe and enduring' stage in anorexia nervosa: comparing eating attitudes, impairment and associated psychopathology
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Rita Ramos, Ana Vaz, Tânia F. Rodrigues, Ana Pinto-Bastos, Isabel Brandão, António Neves, Eva Conceição, and Paulo P. P. Machado
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anorexia nervosa ,duration of illness ,clinical impairment ,severe-enduring criteria ,staging ,Nutrition. Foods and food supply ,TX341-641 - Published
- 2023
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89. Thermal monitoring of a Cryosol in a high marine terrace (Half Moon Island, Maritime Antarctica)
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CARLOS ERNESTO G.R. SCHAEFER, MÁRCIO R. FRANCELINO, ANTONIO B. PEREIRA, ROBERTO F.M. MICHEL, DANIELA SCHMITZ, IORRANA F. SACRAMENTO, WILLIAM F. RODRIGUES, and CAIK O. DE MIRANDA
- Subjects
climate change ,holocene terraces ,soil moisture ,soil thermal regime ,permafrost ,Science - Abstract
Abstract Active layer and permafrost are important indicators of climate changes in periglacial areas of Antarctica, and the soil thermal regime of Maritime Antarctica is sensitive to the current warming trend. This research aimed to characterize the active layer thermal regime of a patterned ground located at an upper marine terrace in Half Moon Island, during 2015-2018. Temperature and moisture sensors were installed at different soil depths, combined with air temperature, collecting hourly data. Statistical analysis was applied to describe the soil thermal regime and estimate active layer thickness. The thermal regime of the studied soil was typical of periglacial environment, with high variability in temperature and water content in the summer, resulting in frequent freeze-thaw cycles. We detected dominant freezing conditions, whereas soil temperatures increased, and the period of high soil moisture content lasted longer over the years. Active layer thickness varied between the years, reaching a maximum depth in 2018. Permafrost degradation affects soil drainage and triggers erosion in the upper marine terrace, where permafrost occurrence is unlikely. Longer monitoring periods are necessary for a detailed understanding on how current climatic and geomorphic conditions affect the unstable permafrost of low-lying areas of Antarctica (marine terraces).
- Published
- 2023
- Full Text
- View/download PDF
90. Stepping on invisible land: on the importance of communicating the value of soils
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Agnieszka E. Latawiec, Magdalena E. Markowicz, Bruna Medeiros, Maiara S. Mendes, Aline F. Rodrigues, Fernanda Gomes, Breno D. Valle, Katarzyna Lisowska, Adam Drosik, Claudio Capeche, Veronica Maioli, Karolina Fedorowicz, and Luciana Azevedo
- Subjects
Soil ecosystem services ,Dissemination ,Movies ,Artists ,Science-practice interface ,Environmental sciences ,GE1-350 - Abstract
Abstract Soils play fundamental roles in the functioning of the Earth's ecosystems. Despite numerous initiatives to protect soils, it continues to be generally perceived as dirt or, at best, the surface we walk on. To better understand soil perception by the public, we conducted a survey with 99 participants from Poland and Brazil. We applied opportunity sampling and conducted semi-structured interviews with 40 respondents from Poland and 30 from Brazil, and 29 unstructured interviews in Brazil. Most of the respondents (53%) of the semi-structured interviews associated soil with the surface where plants grow, while 27% said that it is the ground we step on. When asked about pro-environmental campaigns, none of the respondents pointed to soil-related initiatives. Most of the respondents (99%) claimed that there is a need to increase their knowledge about the importance of soils, mostly through education (30%). The majority of the respondents of the unstructured interviews in Brazil indicated provision services provided by soils and pointed to the need for youth engagement in soil communication, corroborating the results from the semi-structured interviews. To address this, we present the results on artistic workshops as an experimental model for teaching and dissemination. We present two short documentary movies reporting the results from unstructured interviews and artistic workshops that can be used as data gathering tools, teaching tools and for dissemination purposes. This is a novel approach to communicating with the relevant stakeholders to promote more sustainable resource management.
- Published
- 2022
- Full Text
- View/download PDF
91. Two-Step Relaxation of Non-Equilibrium Electrons in Graphene: The Key to Understanding Pump–Probe Experiments
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Diogo F. P. Cunha, Rui Dias, Manuel J. L. F. Rodrigues, and Mikhail I. Vasilevskiy
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graphene ,hot electrons ,pump–probe spectroscopy ,nonlinear optics ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In the majority of experiments targeting nonlinear optical phenomena, the application of high-intensity pulses drives electrons in graphene into a strongly non-equilibrium state. Under these conditions, conventional perturbation theory falls short in explaining graphene’s intricate optical response because of significant deviations in electron distribution over energy states from the equilibrium Fermi-Dirac one. In this work, we present a two-step relaxation model capable of predicting the transient dynamics of graphene’s carriers out of equilibrium, from the generation of spectrally narrow populations of non-thermalized electrons and holes to the establishment of a hot-electron gas and its subsequent cooling toward equilibrium with the crystal lattice. By comparing our model calculations to experimental results, we demonstrate its reliability and relevance to pump–probe experiments, providing insights into the pivotal role of hot electrons in comprehending ultrafast dynamics in graphene.
- Published
- 2024
- Full Text
- View/download PDF
92. Change in the Physiological Aspects of Soybean Caused by Infestation by Bemisia tabaci MEAM1
- Author
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Luciana B. Silva, Lucas C. Almeida, Maria C. F. e Silva, Ramilos R. de Brito, Rafael de S. Miranda, Raimundo H. F. Rodrigues, Carlos M. P. dos Santos, Gilvana da S. Ribeiro, João V. S. Morais, Alisson F. T. da Silva, Hernesise Mayard, Thayline Rodrigues de Oliveira, Vânia Maria Gomes da Costa Lima, Lucia da Silva Fontes, Neurandir Sobrinho da Rocha, Julian de Jesus Lacerda, and Bruno Ettore Pavan
- Subjects
whitefly ,photosynthetic parameters ,gas exchange ,insect pest ,plants resistance ,Glycine max ,Agriculture - Abstract
Whiteflies cause significant crop losses through direct sap feeding, inducing plant physiological disorders and promoting the growth of sooty mold. Moreover, whiteflies can indirectly harm plants by transmitting plant viruses, particularly begomoviruses and criniviruses, resulting in severe viral disease epidemics. This study aimed to evaluate the physiological characteristics of susceptible and resistant soybean cultivars to B. tabaci. The experiments were conducted in a greenhouse. Eleven soybean cultivars were selected and infested with 100 adults of B. tabaci at the V3 stage. The evaluation of photosynthetic parameters, such as photosynthetic rate, leaf transpiration, stomatal conductance, and internal CO2 concentration, revealed that B. tabaci infestation influenced gas exchange in soybean plants. The photosynthetic rate was higher in cultivars AS3810 and M8349 during the V6 stage. Infestations caused alterations in photosynthetic parameters, suggesting increased energy demand to maintain photosynthetic activity. However, the response to infestation varied among the different cultivars, indicating varying levels of resistance and tolerance to the whitefly’s damage. Furthermore, the infestation had a more notable impact during the vegetative phenological stage. In summary, infestation by B. tabaci has a discernible impact on the physiology of soybean plants, resulting in alterations in gas exchange parameters and water use efficiency. The reaction to infestation exhibited variations among different soybean cultivars, indicating potential differences in resistance to the pest. This study underscores the significance of assessing the physiological consequences of whitefly infestations on soybean crops.
- Published
- 2024
- Full Text
- View/download PDF
93. ABSAPT 2022 at IberLEF: Overview of the Task on Aspect-Based Sentiment Analysis in Portuguese.
- Author
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Felix L. V. da Silva, Guilherme da S. Xavier, Heliks M. Mensenburg, Rodrigo F. Rodrigues, Leonardo P. dos Santos, Ricardo M. Araújo, Ulisses Brisolara Corrêa, and Larissa A. de Freitas
- Published
- 2022
94. Pay Attention to Evolution: Time Series Forecasting With Deep Graph-Evolution Learning.
- Author
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Gabriel Spadon, Shenda Hong, Bruno Brandoli, Stan Matwin, José F. Rodrigues Jr., and Jimeng Sun 0001
- Published
- 2022
- Full Text
- View/download PDF
95. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
- Author
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M Elise Lauterbur, Maria Izabel A Cavassim, Ariella L Gladstein, Graham Gower, Nathaniel S Pope, Georgia Tsambos, Jeffrey Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C Haller, Ahmed R Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obsteter, Vitor Antonio Correa Pavinato, Alice Pearson, David Peede, Manolo F Perez, Murillo F Rodrigues, Chris CR Smith, Jeffrey P Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A Cartwright, Gregor Gorjanc, Ryan N Gutenkunst, Jerome Kelleher, Andrew D Kern, Aaron P Ragsdale, Peter L Ralph, Daniel R Schrider, and Ilan Gronau
- Subjects
population genetics ,simulations ,open source ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic datasets remains a major obstacle. Today, more realistic simulations are possible thanks to large increases in the quantity and quality of available genetic data, and the sophistication of inference and simulation software. However, implementing these simulations still requires substantial time and specialized knowledge. These challenges are especially pronounced for simulating genomes for species that are not well-studied, since it is not always clear what information is required to produce simulations with a level of realism sufficient to confidently answer a given question. The community-developed framework stdpopsim seeks to lower this barrier by facilitating the simulation of complex population genetic models using up-to-date information. The initial version of stdpopsim focused on establishing this framework using six well-characterized model species (Adrion et al., 2020). Here, we report on major improvements made in the new release of stdpopsim (version 0.2), which includes a significant expansion of the species catalog and substantial additions to simulation capabilities. Features added to improve the realism of the simulated genomes include non-crossover recombination and provision of species-specific genomic annotations. Through community-driven efforts, we expanded the number of species in the catalog more than threefold and broadened coverage across the tree of life. During the process of expanding the catalog, we have identified common sticking points and developed the best practices for setting up genome-scale simulations. We describe the input data required for generating a realistic simulation, suggest good practices for obtaining the relevant information from the literature, and discuss common pitfalls and major considerations. These improvements to stdpopsim aim to further promote the use of realistic whole-genome population genetic simulations, especially in non-model organisms, making them available, transparent, and accessible to everyone.
- Published
- 2023
- Full Text
- View/download PDF
96. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma
- Author
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Myriam G. Jaarsma-Coes, Lisa Klaassen, Berit M. Verbist, T.H. Khanh Vu, Yvonne L.B. Klaver, Myra F. Rodrigues, Claire Nabarro, Gregorius P.M. Luyten, Coen R.N. Rasch, Marcel van Herk, and Jan-Willem M. Beenakker
- Subjects
Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: Several efforts are being undertaken toward MRI-based treatment planning for ocular proton therapy for uveal melanoma (UM). The interobserver variability of the gross target volume (GTV) on magnetic resonance imaging (MRI) is one of the important parameters to design safety margins for a reliable treatment. Therefore, this study assessed the interobserver variation in GTV delineation of UM on MRI. Methods and Materials: Six observers delineated the GTV in 10 different patients using the Big Brother contouring software. Patients were scanned at 3T MRI with a surface coil, and tumors were delineated separately on contrast enhanced 3DT1 (T1gd) and 3DT2-weighted scans with an isotropic acquisition resolution of 0.8 mm. Volume difference and overall local variation (median standard deviation of the distance between the delineated contours and the median contour) were analyzed for each GTV. Additionally, the local variation was analyzed for 4 interfaces: sclera, vitreous, retinal detachment, and tumor-choroid interface. Results: The average GTV was significantly larger on T1gd (0.57cm3) compared with T2 (0.51cm3, P = .01). A not significant higher interobserver variation was found on T1gd (0.41 mm) compared with T2 (0.35 mm). The largest variations were found at the tumor-choroid interface due to peritumoral enhancement (T1gd, 0.62 mm; T2, 0.52 mm). As a result, a larger part of this tumor-choroid interface appeared to be included on T1gd-based GTVs compared with T2, explaining the smaller volumes on T2. Conclusions: The interobserver variation of 0.4 mm on MRI are low with respect to the voxel size of 0.8 mm, enabling small treatment margins. We recommend delineation based on the T1gd-weighted scans, as choroidal tumor extensions might be missed.
- Published
- 2023
- Full Text
- View/download PDF
97. Forecasting ICU Census by Combining Time Series and Survival Models
- Author
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Lori L. Murray, PhD, John G. Wilson, PhD, Felipe F. Rodrigues, PhD, and Gregory S. Zaric, PhD
- Subjects
Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
OBJECTIVES:. Capacity planning of ICUs is essential for effective management of health safety, quality of patient care, and the allocation of ICU resources. Whereas ICU length of stay (LOS) may be estimated using patient information such as severity of illness scoring systems, ICU census is impacted by both patient LOS and arrival patterns. We set out to develop and evaluate an ICU census forecasting algorithm using the Multiple Organ Dysfunction Score (MODS) and the Nine Equivalents of Nursing Manpower Use Score (NEMS) for capacity planning purposes. DESIGN:. Retrospective observational study. SETTING:. We developed the algorithm using data from the Medical-Surgical ICU (MSICU) at University Hospital, London, Canada and validated using data from the Critical Care Trauma Centre (CCTC) at Victoria Hospital, London, Canada. PATIENTS:. Adult patient admissions (7,434) to the MSICU and (9,075) to the CCTC from 2015 to 2021. INTERVENTIONS:. None. MEASUREMENTS AND MAIN RESULTS:. We developed an Autoregressive integrated moving average time series model that forecasts patients arriving in the ICU and a survival model using MODS, NEMS, and other factors to estimate patient LOS. The models were combined to create an algorithm that forecasts ICU census for planning horizons ranging from 1 to 7 days. We evaluated the algorithm quality using several fit metrics. The root mean squared error ranged from 2.055 to 2.890 beds/d and the mean absolute percentage error from 9.4% to 13.2%. We show that this forecasting algorithm provides a better fit when compared with a moving average or a time series model that directly forecasts ICU census. Additionally, we evaluated the performance of the algorithm using data during the global COVID-19 pandemic and found that the error of the forecasts increased proportionally with the number of COVID-19 patients in the ICU. CONCLUSIONS:. It is possible to develop accurate tools to forecast ICU census. This type of algorithm may be important to clinicians and managers when planning ICU capacity as well as staffing and surgical demand planning over a short time horizon.
- Published
- 2023
- Full Text
- View/download PDF
98. Effect of coronaviruses on blood vessel permeability: potential therapeutic targets
- Author
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Nicolle R. Machado, Karina T. Dias, Bryan F.S. Cortes, and Stephen F. Rodrigues
- Subjects
Diseases of the respiratory system ,RC705-779 - Abstract
Coronavirus-induced diseases have afflicted humanity for several decades. This scenario was aggravated by the emergence of the coronavirus disease 2019 (named COVID-19) in Wuhan, China, in December 2019. Since then, COVID-19 has killed millions of people worldwide, probably the most devastating pandemic since HIV/AIDS. This review aimed to bring together important updated aspects related to coronavirus-induced diseases and the enhanced vascular permeability observed mainly in the lungs of affected people. The dysregulated vascular permeability in the lungs is of fundamental importance for coronaviruses-caused morbidity and mortality. Thus, as described in this review, it is a target of new and old drugs.
- Published
- 2023
- Full Text
- View/download PDF
99. APEHR: Automated Prognosis in Electronic Health Records using multi-head self-attention.
- Author
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Alexander Ylnner Choquenaira Florez, Lucas C. Scabora, Danilo Medeiros Eler, and José F. Rodrigues Jr.
- Published
- 2021
- Full Text
- View/download PDF
100. Continual Learning for Object Classification: A Modular Approach.
- Author
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Daniel Turner, Pedro J. S. Cardoso, and João M. F. Rodrigues
- Published
- 2021
- Full Text
- View/download PDF
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