78 results on '"Erzik, Can"'
Search Results
52. Meloxicam Exerts Neuroprotection on Spinal Cord Trauma in Rats
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Hakan, Tayfun, primary, Toklu, Hale Zerrin, additional, Biber, Necat, additional, Celik, Hasan, additional, Erzik, Can, additional, Oğünç, Ayliz Velioğlu, additional, Çetinel, Şule, additional, and Şener, Göksel, additional
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- 2010
- Full Text
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53. The Anti-Inflammatory and Neuroprotective Effects of Ghrelin in Subarachnoid Hemorrhage-Induced Oxidative Brain Damage in Rats
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Erşahin, Mehmet, primary, Toklu, Hale Z., additional, Erzik, Can, additional, Çetinel, Şule, additional, Akakin, Dilek, additional, Velioğlu-Öğünç, Ayliz, additional, Tetik, Şermin, additional, Özdemir, Zarife N., additional, Şener, Göksel, additional, and Yeğen, Berrak Ç., additional
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- 2010
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54. Neuroprotective Effects of Alpha-Lipoic Acid in Experimental Spinal Cord Injury in Rats
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Toklu, Hale Z., primary, Hakan, Tayfun, additional, Celik, Hasan, additional, Biber, Necat, additional, Erzik, Can, additional, Ogunc, Ayliz V., additional, Akakin, Dilek, additional, Cikler, Esra, additional, Cetinel, Sule, additional, Ersahin, Mehmet, additional, and Sener, Goksel, additional
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- 2010
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55. Alpha Lipoic Acid Alleviates Oxidative Stress and Preserves Blood Brain Permeability in Rats with Subarachnoid Hemorrhage
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Erşahin, Mehmet, primary, Toklu, Hale Z., additional, Çetinel, Şule, additional, Yüksel, Meral, additional, Erzik, Can, additional, Berkman, M. Zafer, additional, Yeğen, Berrak Ç., additional, and Şener, Göksel, additional
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- 2009
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56. Resveratrol protects against irradiation-induced hepatic and ileal damage via its anti-oxidative activity
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Velioğlu-Öğünç, Ayliz, primary, Şehirli, Özer, additional, Toklu, Hale Z., additional, Özyurt, Hazan, additional, Mayadağli, Alpaslan, additional, Ekşioğlu-Demiralp, Emel, additional, Erzik, Can, additional, Çetinel, Şule, additional, Yeğen, Berrak Ç., additional, and Şener, Göksel, additional
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- 2009
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57. S1634 Alpha-Lipoic Acid Improves Acetic Acid-Induced Gastric Ulcer Healing in Rats
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Karakoyun, Berna, primary, Yuksel, Meral, additional, Ercan, Feriha, additional, Erzik, Can, additional, and Yegen, Berrak C., additional
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- 2008
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58. T1292 Glucagon-Like Peptide-2 Protects Against Abdominopelvic Radiation-Induced Intestinal and Colonic Damage
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Deniz, Mustafa, primary, Can, Güray, additional, Atasoy, Beste M., additional, Dane, Faysal, additional, Erzik, Can, additional, Cetinel, Sule, additional, and Yegen, Berrak C., additional
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- 2008
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59. Antioxidant Effect of Alpha-Lipoic Acid against Ethanol-Induced Gastric Mucosal Erosion in Rats
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Şehirli, Özer, primary, Tatlıdede, Elif, additional, Yüksel, Meral, additional, Erzik, Can, additional, Çetinel, Sule, additional, Yeğen, Berrak Ç., additional, and Şener, Göksel, additional
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- 2007
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60. Bizarre Parosteal Osteochondromatous Proliferation of the Little Toe
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Saygi, Baransel, primary, Karadag-Saygi, Evrim, primary, Erzik, Can, primary, Erkan, Murat, primary, and Yildirim, Yakup, primary
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- 2006
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61. A mutation in a functional Sp1 binding site of the telomerase RNA gene (hTERC) promoter in a patient with Paroxysmal Nocturnal Haemoglobinuria
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Keith, W Nicol, primary, Vulliamy, Tom, additional, Zhao, Jiangqin, additional, Ar, Cem, additional, Erzik, Can, additional, Bilsland, Alan, additional, Ulku, Birsen, additional, Marrone, Anna, additional, Mason, Philip J, additional, Bessler, Monica, additional, Serakinci, Nedime, additional, and Dokal, Inderjeet, additional
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- 2004
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62. Meloxicam Exerts Neuroprotection on Spinal Cord Trauma in Rats.
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Hakan, Tayfun, Toklu, Hale Zerrin, Biber, Necat, Celik, Hasan, Erzik, Can, Oğünç, Ayliz Velioğlu, Çetinel, Şule, and Şener, Göksel
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CENTRAL nervous system injuries ,SPINAL cord ,NEURONS ,REACTIVE oxygen species ,LIPID peroxidation (Biology) - Abstract
Traumatic injury to the central nervous system results in the delayed dysfunction and neuronal death. Impaired mitochondrial function, generation of reactive oxygen species (ROS), and lipid peroxidation occur soon after traumatic spinal cord injury (SCI), while the activation of compensatory molecules that neutralize ROS occurs at later time points. The aim of the current study was to investigate the putative neuroprotective effect of the COX2 inhibitor meloxicam in a rat model of SCI. In order to induce SCI, a standard weight-drop method that induced a moderately severe injury (100 g/cm force) at T10, was used. Injured animals were given either 2 mg/kg meloxicam or saline 30 min postinjury by intraperitoneal injection. At seven days postinjury, neurological examination was performed and rats were decapitated. Spinal cord samples were taken for histological examination or determination of malondialdehyde (MDA) and glutathione (GSH) levels, myeloperoxidase (MPO) activity and DNA fragmentation. Formation of ROS in spinal cord tissue samples was monitored by using a chemiluminescence (CL) technique. SCI caused a significant decrease in spinal cord GSH content, which was accompanied with significant increases in CL, MDA levels, MPO activity, and DNA damage. On the other hand, meloxicam treatment reversed all these biochemical parameters as well as SCI-induced histopathological alterations. Furthermore, impairment of the neurological functions due to SCI was improved by meloxicam treatment. The present study suggests that meloxicam, reduces SCI-induced oxidative stress and exerts neuroprotection by inhibiting lipid peroxidation, GSH depletion, and DNA fragmentation. [ABSTRACT FROM AUTHOR]
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- 2011
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63. Protective Effects of Alpha-Lipoic Acid Against Oxidative Injury in TNBS-induced Colitis.
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Şehirli, Ahmet Özer, Tatlıdede, Elif, Yüksel, Meral, Çetinel, Şule, Erzik, Can, Yeğen, Berrak, and Şener, Göksel
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LIPOIC acid ,OXIDATIVE stress ,COLITIS ,ANTIOXIDANTS ,MALONDIALDEHYDE ,GLUTATHIONE ,CYTOKINES ,LABORATORY rats - Abstract
Copyright of Erciyes Medical Journal / Erciyes Tip Dergisi is the property of KARE Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2009
64. A mutation in a functional Sp1 binding site of the telomerase RNA gene (hTERC) promoter in a patient with Paroxysmal Nocturnal Haemoglobinuria.
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Keith, W. Nicol, Vulliamy, Tom, Jiangqin Zhao, Ar, Cem, Erzik, Can, Bilsland, Alan, Ulku, Birsen, Marrone, Anna, Mason, Philip J., Bessler, Monica, Serakinci, Nedime, and Dokal, Inderjeet
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GENETIC mutation ,BINDING sites ,RNA ,TELOMERASE ,PAROXYSMAL hemoglobinuria - Abstract
Background: Mutations in the gene coding for the RNA component of telomerase, hTERC, have been found in autosomal dominant dyskeratosis congenita (DC) and aplastic anemia. Paroxysmal nocturnal hemoglobinuria (PNH) is a clonal blood disorder associated with aplastic anemia and characterized by the presence of one or more clones of blood cells lacking glycosylphosphatidylinositol (GPI) anchored proteins due to a somatic mutation in the PIGA gene. Methods: We searched for mutations in DNA extracted from PNH patients by amplification of the hTERC gene and denaturing high performance liquid chromatography (dHPLC). After a mutation was found in a potential transcription factor binding site in one patient electrophoretic mobility shift assays were used to detect binding of transcription factors to that site. The effect of the mutation on the function of the promoter was tested by transient transfection constructs in which the promoter is used to drive a reporter gene. Results: Here we report the finding of a novel promoter mutation (-99C->G) in the hTERC gene in a patient with PNH. The mutation disrupts an Sp1 binding site and destroys its ability to bind Sp1. Transient transfection assays show that mutations in this hTERC site including C-99G cause either up- or down-regulation of promoter activity and suggest that the site regulates core promoter activity in a context dependent manner in cancer cells. Conclusions: These data are the first report of an hTERC promoter mutation from a patient sample which can modulate core promoter activity in vitro, raising the possibility that the mutation may affect the transcription of the gene in hematopoietic stem cells in vivo, and that dysregulation of telomerase may play a role in the development of bone marrow failure and the evolution of PNH clones. [ABSTRACT FROM AUTHOR]
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- 2004
65. Role of Vagal Afferents on High Fat Diet-induced Alterations in Rat Behaviour and Gut Motility
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Cetin, Okan, Karatas, Hakan Omer, Akgun, Busra, Ozturk, Yonca, Imeryuz, Nese, Ozdemir, Zarife, Ozbeyli, Dilek, Arabaci, Sevil, Peker, Irem, Erzik, Can, Berrak Yegen, and Zortul, Hacer
66. The Combination of Nesfatin-1 and Phenytoin Has a Synergistic Effect in Improving Seizure-induced Neuronal Damage and Memory Dysfunction in Rats
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Tamer, Sevil Arabaci, Koyuncuoglu, Turkan, Karagoz, Ayca, Akakin, Dilek, Erzik, Can, Yuksel, Meral, and Berrak Yegen
67. Examination of exosome profile in patients with ankylosing spondylitis
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Karakaya, Emel, Erzik, Can, Marmara Üniversitesi, Sağlık Bilimleri Enstitüsü, and Tıbbi Biyoloji ve Genetik Anabilim Dalı
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Eksozom ,Hücre dışı vezikül ,Ankilozan spondilit ,Cell surface markers ,Extracellular vesicle ,Hücre yüzeyi belirteçleri Exosome ,Ankylosing spondylitis - Abstract
Amaç: Bu çalışmada, hücre-hücre iletişiminin temel komponentleri olan eksozomların kronik, sistemik ve inflamatuvar bir hastalık olan ankilozan spondilit (AS) patogenezindeki olası rolü ve bu eksozomların kökeni araştırılmıştır.Gereç ve Yöntem: 10 AS hastası ve 10 sağlıklı kontrolden elde edilen serum içerisindeki eksozomlar, önce fiziksel özelliklerinden yararlanılarak Izon qEV2/35 nm kolonları ile, ardından biyokimyasal özelliklerinden yararlanılarak CD9, CD63 ve CD81 antikorlarıyla kaplı 3 µm çapındaki manyetik boncuklar ile izole edilmiştir. Filtratın saflığını değerlendirmek için BCA ve ELISA testleri yapılmıştır. Eksozom varlığını doğrulamak, eksozomların kökenini ve sitokin profilini ortaya çıkarmak için flow sitometri analizi ile eksozom yüzey belirteçleri karakterize edilmiştir. Eksozom konsantrasyonu ile ilgili flow sitometri bulgusunu desteklemek amacıyla, eksozom konsantrasyonu ile AS arasındaki ilişki BCA yöntemi ile test edilmiş ve sonuçlar karşılaştırılmıştır.Bulgular: Flow sitometri analizinde, AS grubunun CD86+TSG101+ ve CD3+TSG101+ eksozom yüzdeleri kontrol grubuna göre anlamlı derecede yüksekti (p
- Published
- 2023
68. Protective effects of spironolactone against hepatic ischemia/reperfusion injury in rats
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Ayliz Velioğlu Öğünç, Şule Çetinel, Naziye Özkan, Belkıs Soylu, Ahmet Ozer Sehirli, Süleyman Atalay, Aslı Aykaç, Can Erzik, Atalay, Suleyman, Soylu, Belkis, Aykac, Asli, Ogunc, Ayliz Velioglu, Cetinel, Sule, Ozkan, Naziye, Erzik, Can, and Sehirli, Ahmet Ozer
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malondialdehyde ,Antioxidant ,medicine.medical_treatment ,Ischemia ,Hepatic ischemia reperfusion ,ISCHEMIA-REPERFUSION INJURY ,Pharmacology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,glutathione ,biology ,business.industry ,Glutathione ,medicine.disease ,Malondialdehyde ,MELATONIN PROTECTS ,cytokines ,APOPTOSIS ,RECEPTORS ,spironolactone ,chemistry ,030220 oncology & carcinogenesis ,Myeloperoxidase ,biology.protein ,Spironolactone ,030211 gastroenterology & hepatology ,Original Article ,Liver function ,LIVER-INJURY ,business ,Reperfusion injury - Abstract
Objective: In the present study, it was aimed to study the antioxidant effects of spironolactone (SPL) to determine its possible protective effects in hepatic ischemia reperfusion injury. Material and Methods: Hepatic artery, portal vein, and bile duct of Wistar albino rats were clamped for 45 minutes under anesthesia to form an ischemia period. Then reperfusion was allowed and the rats were decapitated 60 minutes later. SPL (20 mg/kg, p.o.) or SF was orally administered for 30 minutes before ischemia. Rats in the control arm underwent sham surgery and were administered isotonic saline. Liver function was studied by measuring aspartate aminotransferase (AST), alanine aminotransferase (ALT), tumor necrosis factor-alpha (TNF-alpha), and interleukin 1beta (IL-1 beta) levels. Malondialdehyde (MDA), glutathione (GSH), luminol, and lucigenin levels, myeloperoxidase (MPO) and Na+-K+- ATPase enzyme activities were analyzed to study tissue injury under light microscope. Results: While IR increased AST, ALT, TNF-alpha, and IL-1 beta levels and MDA, luminol, and lusigenin levels and MPO activities, it caused a decrease in GSH levels and Na+K+-ATPase activity. Spironolactone administration significantly improved these values. Conclusion: Protective effects of SPL against ischemia/reperfusion injury via various mechanisms suggest that this agent may become a novel treatment agent in clinical practice.
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- 2019
69. Radiation-induced oxidative injury of the ileum and colon is alleviated by glucagon-like peptide-1 and -2
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Beste M. Atasoy, Şule Çetinel, Mustafa Deniz, Berrak Ç. Yeğen, Can Erzik, Güray Can, Faysal Dane, BAİBÜ, Tıp Fakültesi, Dahili Tıp Bilimleri Bölümü, Can, Güray, Deniz, Mustafa, Atasoy, Beste M., Dane, Faysal, Can, Guray, Erzik, Can, Cetinel, Sule, and Yegen, Berrak C.
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medicine.medical_specialty ,endocrine system ,Ileum ,Lipid peroxidation ,chemistry.chemical_compound ,Internal medicine ,medicine ,lcsh:Nuclear and particle physics. Atomic energy. Radioactivity ,Myeloperoxidase ,biology ,digestive, oral, and skin physiology ,Glutathione ,Malondialdehyde ,Glucagon-like peptide-1 ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Apoptosis ,biology.protein ,DNA fragmentation ,lcsh:QC770-798 ,Radiation-enteritis ,GLP-1 ,GLP-2 - Abstract
WOS:000215712700012 Purpose: The present study was conducted to characterize the possible therapeutic effects of glucagon-like peptide (GLP)-1 and GLP-2 against oxidative damage in the ileum and colon of irradiated rats. Methods and materials: Sprague-Dawley rats of both sexes received either a single dose of GLP-1 (0.1 nmol/kg, intraperitoneally, ip; n = 6) 10 min before abdominal irradiation (IR) or two consecutive doses of GLP-2 (7 nmol/kg, ip; n = 6) at 30 and 10 min before IR, while another group was administered vehicle (n = 6) 10 min before IR. Control rats (n = 6) received vehicle treatment without IR. On the fourth day of IR, samples from ileum and colon were removed for histological analysis, for the determination of myeloperoxidase (MPO) activity, malondialdehyde (MDA) and glutathione (GSH) levels, as well as DNA fragmentation ratio, an index of apoptosis. Results: IR-induced oxidative injury in the colonic tissue of vehicle-treated rats, evidenced by elevated MDA levels and MPO activity, as well as depleted colonic GSH levels, was reversed by GLP-2, while GLP-1 reduced IR-induced elevations in colonic MDA levels. IR-induced injury with elevated ileal MDA levels was reduced by GLP-1, while replenishment in GSH was observed in GLP-2-treated rats. Conclusion: Current findings suggest that GLP-1 and GLP-2 appear to have protective roles in the irradiation-induced oxidative damage of the gut by inhibiting neutrophil infiltration and subsequent activation of inflammatory mediators that induce lipid peroxidation. Copyright (C) 2015, The Egyptian Society of Radiation Sciences and Applications. Production and hosting by Elsevier B.V. This is an open access article under the CC BY-NC-ND license.
- Published
- 2015
70. Nesfatin-1 alleviates extrahepatic cholestatic damage of liver in rats
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Sinan Arici, Oğuzhan Zengi, Candaş Erçetin, Pelin Demirtürk, Erkan Yavuz, Ali Solmaz, Atilla Çelik, Can Erzik, Osman Bilgin Gülçiçek, Fatih Çelebi, Hakan Yigitbas, Solmaz, Ali, Gulcicek, Osman Bilgin, Ercetin, Candas, Yigitbas, Hakan, Yavuz, Erkan, Arici, Sinan, Erzik, Can, Zengi, Oguzhan, Demirturk, Pelin, Celik, Atilla, and Celebi, Fatih
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0301 basic medicine ,Male ,Necrosis ,DNA fragmentation ,medicine.disease_cause ,HEPATOCYTES ,chemistry.chemical_compound ,ANTIOXIDANTS ,Edema ,Malondialdehyde ,oxidative stress ,hepatic damage ,lcsh:R5-920 ,biology ,Alanine Transaminase ,General Medicine ,LIPID-PEROXIDATION ,DNA-Binding Proteins ,medicine.anatomical_structure ,Liver ,Neutrophil Infiltration ,Cytokines ,medicine.symptom ,lcsh:Medicine (General) ,Research Article ,MELATONIN ,medicine.medical_specialty ,Obstructive jaundice ,DNA damage ,Nerve Tissue Proteins ,MECHANISMS ,03 medical and health sciences ,Cholestasis ,Internal medicine ,DEOXYRIBONUCLEIC-ACID ,INJURY ,medicine ,Animals ,Nucleobindins ,Aspartate Aminotransferases ,Rats, Wistar ,business.industry ,Calcium-Binding Proteins ,BILE-DUCT OBSTRUCTION ,medicine.disease ,Small intestine ,Rats ,030104 developmental biology ,Endocrinology ,Alanine transaminase ,chemistry ,JAUNDICE ,biology.protein ,business ,cholestasis ,Oxidative stress ,DNA Damage - Abstract
Obstructive jaundice (OJ) can be defined as cessation of bile flow into the small intestine due to benign or malignant changes. Nesfatin-1, recently discovered anorexigenic peptide derived from nucleobindin-2 in hypothalamic nuclei, was shown to have anti-inflammatory and antiapoptotic effects. This study is aimed to investigate the therapeutic effects of nesfatin-1 on OJ in rats. Twenty-four adult male Wistar-Hannover rats were randomly assigned to three groups: sham (n = 8), control (n = 8), and nesfatin (n = 8). After bile duct ligation, the study groups were treated with saline or nesfatin-1, for 10 days. Afterward, blood and liver tissue samples were obtained for biochemical analyses, measurement of cytokines, determination of the oxidative DNA damage, DNA fragmentation, and histopathologic analyses. Alanine aminotransferase and gamma-glutamyl transferase levels were decreased after the nesfatin treatment; however, these drops were statistically non-significant compared to control group (p = 0.345, p = 0.114). Malondialdehyde levels decreased significantly in nesfatin group compared to control group (p = 0.032). Decreases in interleukin-6 and tumor necrosis factor-α levels from the liver tissue samples were not statistically significant in nesfatin group compared to control group. The level of oxidative DNA damage was lower in nesfatin group, however this result was not statistically significant (p = 0.75). DNA fragmentation results of all groups were similar. Histopathological examination revealed that there was less neutrophil infiltration, edema, bile duct proliferation, hepatocyte necrosis, basement membrane damage, and parenchymal necrosis in nesfatin compared to control group. The nesfatin-1 treatment could alleviate cholestatic liver damage caused by OJ due to its anti-inflammatory and antioxidant effects.
- Published
- 2016
71. Spondi̇loartropati̇leri̇n geneti̇k ve epi̇geneti̇k yaklaşimla i̇ncelenmesi̇: Anki̇lozan spondi̇li̇tte epi̇geneti̇k modi̇fi̇ye edi̇ci̇leri̇n ekspresyonu
- Author
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Çolakoğlu, Şeyma, Erzik, Can, Tıbbi Biyoloji ve Genetik Anabilim Dalı, and Tıbbi Biyoloji Anabilim Dalı
- Subjects
Spondylitis-ankylosing ,Rheumatic diseases ,Tıbbi biyoloji ,Autoimmune diseases ,Genetics ,Arthropathy ,Genetik ,Medical Biology ,Tıbbi Biyoloji ,Spondylitis - Abstract
1.ÖZETSpondiloartropati (SpA) hastalık grubunda yer alan Ankilozan spondilit (AS); başlıca enflamatuvar sırt ağrısı, asimetrik periferal oligoartrit, entezit ile tanımlanmış, diğer çok etkenli hastalıklar gibi, ortaya çıkışı genetik ve çevresel etkenlerle tetiklenen romatizmal otoimmün bir hastalıktır. Geçtiğimiz yıllar içinde insan ve diğer organizma genomlarının dizilenmesiyle varyasyonların incelenmesi, birçok hastalıkta olduğu gibi, AS hastalığının da genetik temelinin anlaşılması konusunda anlamlı mesafe kaydedilmesine imkan sağlamıştır.Genetik temelin yanı sıra epigenetik değişikliklerin de fizyolojik süreçlerde olduğu kadar, hastalık gelişiminde de önemli olduğu bilinmektedir. Epigenetik değişiklikler, DNA dizisindeki değişimlerle açıklanamayan gen ifadesindeki kalıtsal değişiklikler olarak tanımlanır. Başlıca epigenetik değişiklikler; DNA metillenmesi, histon ve kromatin yapı değişiklikleri ve kodlamayan RNA havuzundan oluşur. Yapılan çalışmalarda, epigenetik özellikleri etkileyen moleküllerin ifade edilmesinde ortaya çıkan değişikliklerin artirit gelişimi ve romatoid artiritin patogeneziyle ilişkisi olduğu rapor edilmiştir.Bu çalışmada AS tanısı almış diskordant monozigotik ikizler ile hastalığın radyolojik skorlamasına göre ağır ve hafif grup olarak klinikte tanımlanan iki gruba dahil edilmiş hastalarda epigenetik yapıyı düzenleyen (DNA metilaz, histon metilaz, kromatin şekillendiriciler gibi) genlerin ekspresyonları analiz edilmiştir. Analiz sonucunda NEK6, PRMT6, KDM6B, AURKA, CARM1, SETD1B, SETDB1, PRMT1, DNMT1, PRMT3, SETD7, MBD3, HDAC1, KDM4A, MLL, SUV420H1, NCOA3, KAT2B, SMYD3, RPS6KA5 genlerinin ekspresyonlarında görünen gruplar arası farklılık, anılan genlerin daha yüksek sayıda hasta gruplarında ekspresyon açısıdan incelenerek, doğrulanması gerektiğini ortaya koymuştur. Anahtar Kelimeler: Spondiloartropati , Ankilozan Spondilit, Epigenetik, Epigenetik Modifiye Edici1.SUMMARYAnkylosing spondylitis (AS), which is a member of multifactorial autoinflammatory Spondyloarthropathies, is defined by inflammatory dorsal pain, asymmetric peripheral oligoarthritis, enthesitis.The analysis of variations by DNA sequencing in human and other organisms has enabled a significant progress in understanding of the genetic basis of AS and many other diseases. Beside genetical basic, epigenetic changes are also considered as important tools for physiological processes and disease development. Major epigenetic changes can be classified as DNA methylation, histone modifications, chromatin remodelling and non-coding RNA effects. Studies so far are indicating that expression changes of molecules involved in epigenetic modifications might have a role in development of arthritis and pathogenesis of rheumatoid arthritis.In this study the expression of so called “epigenetic modifiers” like DNA methylase, histon methylase, chromatin remodeller complex has been analysed in a discordant monozygotic twin couple for AS and AS patients that have been classified as “fast progressing” and slow progressing according to radiographic scoring. The differential expression in NEK6, PRMT6, KDM6B, AURKA, CARM1, SETD1B, SETDB1, PRMT1, DNMT1, PRMT3, SETD7, MBD3, HDAC1, KDM4A, MLL, SUV420H1, NCOA3, KAT2B, SMYD3, RPS6KA5 genes should be validated in the same patient groups with larger number of subjects. Key Words: Spondyloarthropathy, Ankylosing Spondylitis, Epigenetic, Epigenetic Modifier
- Published
- 2015
72. Neuroprotective Effects of Alpha-Lipoic Acid in Experimental Spinal Cord Injury in Rats
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Hale Z. Toklu, Necat Biber, Can Erzik, Hasan Hüseyin Çelik, Şule Çetinel, Ayliz Velioğlu Öğünç, Tayfun Hakan, Dilek Akakin, Mehmet Erşahin, Göksel Şener, Esra Çikler, Toklu, Hale Z., Hakan, Tayfun, Celik, Hasan, Biber, Necat, Erzik, Can, Ogunc, Ayliz V., Akakin, Dilek, Cikler, Esra, Cetinel, Sule, Ersahin, Mehmet, and Sener, Goksel
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Male ,METHYLPREDNISOLONE ,medicine.medical_treatment ,Original Contributions ,DIHYDROLIPOIC ACID ,ISCHEMIA-REPERFUSION INJURY ,medicine.disease_cause ,Antioxidants ,Lipid peroxidation ,PROTECTS ,chemistry.chemical_compound ,0302 clinical medicine ,Malondialdehyde ,ANTIOXIDANT ,GLUTATHIONE ,Medicine ,030212 general & internal medicine ,OXIDATIVE STRESS ,Spinal cord injury ,Neurologic Examination ,biology ,Thioctic Acid ,Neuroprotection ,medicine.anatomical_structure ,Neuroprotective Agents ,Anesthesia ,Myeloperoxidase ,medicine.medical_specialty ,Alpha-lipoic acid ,Intraperitoneal injection ,TRAUMATIC BRAIN-INJURY ,030209 endocrinology & metabolism ,DNA Fragmentation ,Trauma ,03 medical and health sciences ,Internal medicine ,Spinal cord injuries ,Animals ,Rats, Wistar ,Peroxidase ,Analysis of Variance ,business.industry ,medicine.disease ,Spinal cord ,Rats ,Disease Models, Animal ,Endocrinology ,chemistry ,Glutathione, Myeloperoxidase ,Luminescent Measurements ,biology.protein ,DNA damage ,Neurology (clinical) ,Lipid Peroxidation ,business ,Reactive Oxygen Species ,Oxidative stress - Abstract
Background: Oxidative stress is a mediator of secondary injury to the spinal cord following trauma. Objective: To investigate the putative neuroprotective effect of a-lipoic acid (LA), a powerful antioxidant, in a rat model of spinal cord injury (SCI). Methods: Wistar albino rats were divided as control, vehicle-treated SCI, and LA-treated SCI groups. To induce SCI, a standard weight-drop method that induced a moderately severe injury (100 g/cm force) at T10 was used. Injured animals were given either 50 mg/kg LA or saline at 30 minutes postinjury by intraperitoneal injection. At 7 days postinjury, neurologic examination was performed, and rats were decapitated. Spinal cord samples were taken for histologic examination or determination of malondialdehyde (MDA) and glutathione (GSH) levels, myeloperoxidase (MPO) activity, and DNA fragmentation. Formation of reactive oxygen species in spinal cord tissue samples was monitored by using a chemiluminescence (CL) technique. Results: SCI caused a significant decrease in spinal cord GSH content, which was accompanied with significant increases in luminol CL and MDA levels, MPO activity, and DNA damage. Furthermore, LA treatment reversed all these biochemical parameters as well as SO-induced histopathologic alterations. Conversely, impairment of the neurologic function caused by SCI remained unchanged. Conclusion: The present study suggests that LA reduces SCI-induced oxidative stress and exerts neuroprotection by inhibiting lipid peroxidation, glutathione depletion, and DNA fragmentation.
- Published
- 2010
73. Hematolojik malignitelrede gadd45 epigenetik disregülasyonu
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Çavuşoğlu, Enise, Çavuşoğlu, Beyazıt, Erzik, Can, and Tıbbi Biyoloji Anabilim Dalı
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Hücre Parçalanması ,Genetik ,Hücreler ,Sitoloji ,Tıbbi Biyoloji - Abstract
1.ÖZET: GADD45 gen ailesi hücrede DNA hasarına cevap oluşturulması ve hücre bölünmesinin durdurulması süreçlerinde etkili olan, nükleer proteinler GADD45α,β ve γ’ yı kodlar. Her üç GADD45 gen ailesi üyesi de MTK1 kinazı aktive ederek p38/c-jun-NH2-kinaz aktivasyonunu ve apoptozu indüklemektedir. Yapılan çalışmalarda GADD45γ’nın tümör hücrelerinin koloni oluşturmasını ve bölünmesini baskıladığı gösterilmiştir. Ayrıca birçok kanser türünde GADD45γ’nın metile durumda bulunduğu ve metilasyonun ekspresyonu baskıladığı gösterilmiştir. Yapılan çalışmanın amacı hematolojik malignitelerde GADD45γ promotorunun metilasyon durumunun belirlenmesi ve metilasyonun ekspresyona etkisinin saptanmasıdır. Bunun için hemotolojik malignite hücre soylarından ve 117 akut miyeloid lösemi (AML), 94 multipl miyelom (MM) teşhisi konmuş hastadan alınan kan ve kemik iliği örneklerinden DNA izolasyonu yapılmıştır. Bisülfit modifikasyonunun ardından örneklerle metilasyon spesifik polimeraz zincir reaksiyonu (MSP) yapılmıştır. Non-Hodgkin lenfoma hücre serileri L–428 ve L–1236, Burkitt lenfoma hücre serisi Raji hücrelerinde GADD45γ promotoru tamamiyle metillenmiş olduğu, AML hücre serileri GDM–1, HL–60, KG1a ve MM hücre serisi OPM–2 hücrelerinde ise kısmen metillenmiş olduğu görülmüştür. İncelenen AML hasta örneklerinde metilasyon saptanmazken 94 MM hasta örneğinden 8’inde metilasyon saptanmıştır. İstatistiksel hesaplamalar sonucunda metilasyon saptanan hastalarda ortalama kalsiyum düzeyinin metilasyon görülmeyenlere oranla daha yüksek olduğu görülmüştür. Ayrıca GADD45γ’nın metile durumda olduğu hastaların ortalama sağ kalım sürelerinin 13,7 ay, genin metillenmemiş olarak bulunduğu hastalarda ise bu sürenin 57,1 ay olduğu görülmüştür. Metilasyonun genin ekspresyonuna etkisinin belirlenmesi amacıyla hücre soyları DNA metiltransferaz (DNMT) inhibitörü DAC ile 96 saat boyunca inkübe edilmiş ve RT-PCR uygulanmıştır. GADD45γ promotorunun tamamiyle metillenmiş durumda bulunduğu L–1236 hücrelerinde DAC uygulaması sonrası genin ekspresyonunda değişiklik olmazken, Raji, L–428, HL–60, KG1a, OPM–2 hücrelerinde DAC uygulaması sonrası genin ekspresyonunda artış gözlemlenmiştir. Elde edilen bulgular hemotolojik malignitelerde GADD45γ geninin tümör tipine bağlı olarak epigenetik mekanizmalarla sessizleştirilebileceğini göstermiştir.Anahtar Kelimeler: GADD45 gen ailesi, GADD45 gamma, epigenetik, DNA metilasyonu, hematolojik malinite 1.SUMMARYEpigenetic dysregulation of GADD45 in hematologic malignanciesGADD45 gene family encodes the nuclear proteins, GADD45α, β and γ, which response to damage in DNA in a cell and stopping cell proliferation. It has been shown from the research conducted in recent years that GADD45γ suppresses the colony formation and proliferation of tumor cells.The purpose of this study is to determine the methylation state of GADD45γ promoter in hemotologic malignities and the effect of methylation on expression. Therefore, DNA isolation is performed on blood and bone marrow samples of 117 acute myeloid leukemia (AML), and 94 multiple myelom (MM) patients and hematologic malignency cell lines . After the bisulfide modification of DNA, methylation specific polymerase chain reaction (MSP) has been performed on the samples. It has been found that, in Hodgkin lymphoma cell lines L-428 and L-1236 and Burkitt lymphoma cell lines Raji, GADD45γ promoter was fully methylated. However in AML cell lines GDM-1, HL-60, KG1a and MM cell lines OPM-2 , GADD45γ promoter has been found to be partially methylated. No methylation was found in AML patient samples whereas 8 of of 94 MM patient samples show promoter methylation. The survival time of the patients with methylated GADD45γ is 13.7 months, whereas the survival time of the patients with unmethylated GADD45γ is 57.1 months. In order to understand the effect of methylation on the gene expression, the cell lines were treated with DNA methyltransferase inhibitor (DAC) for 96 hours and then real-time polymerase-chain reaction (RT-PCR) was performed. In L-1236 cells where GADD45γ promoter was fully methylated, there has been no change in gene expression after DAC treatment whereas in Raji, L-428, HL-60, KG1a and OPM-2 cells, an increase in gene expression has been observed after DAC treatment,. The findings of this study indicate that in hemotoligic malignancies, GADD45γ gene may be silenced in epigenetic mechanisms according to the type of tumor.Key Words: GADD45 gene family, GADD45 gamma, Epigenetic, DNA methylation, heamatological malignancy
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- 2009
74. Cytokine Signature Differences in Major Phenotypic Groups of Behçet Disease.
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Deniz R, Emrence Z, Punar Ş, İleri B, Arga KY, Alibaz-Öner F, Bes C, Direskeneli H, Gül A, and Erzik C
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Objectives: Behçet disease (BD) has heterogeneous presentations, mainly mucocutaneous, vascular, and ocular manifestations. The mechanisms associated with different phenotypes have not been clarified. We aimed to investigate the expression of innate and adaptive immunity-related cytokines in these 3 main BD phenotypes in active and untreated states and remission after treatment to be able to develop a cytokine-based treatment algorithm., Methods: Serum samples were isolated from 41 patients with newly diagnosed active BD (aBD), which consisted of 19 mucocutaneous aBD, 11 ocular aBD (o-aBD), and 11 vascular aBD patients, 35 patients in remission (rBD), and 9 healthy controls (HC). Serum levels of each cytokine were measured with sandwich enzyme-linked immunosorbent assay and analyzed as both raw measurements and corrected levels for each 1 million white blood cells., Results: The study included 41 aBD patients (female/male [F/M]: 9/32; median age, 29 years), 35 rBD patients (F/M: 9/26; median age, 29 years), and 9 HC (F/M: 3/6; median age, 28 years). The serum interferon γ level was significantly higher in the aBD group than in the rBD (116 vs. 92 pg/mL, p = 0.022). The serum interleukin 35 (IL-35) level was significantly higher in the HC group compared with aBD and rBD (p = 0.05). IL-17-related cytokines were lower in o-aBD. With treatment, they increased in o-aBD but decreased in mucocutaneous aBD and vascular aBD patients., Conclusion: This study supports the involvement of both innate and TH1-predominated adaptive immune responses across all BD phenotypes. The IL-17 and TH17-related immune responses appear less prominent in ocular BD, which may explain the ineffectiveness of IL-17 blockade in treating ocular BD. These findings support the need for further studies using comprehensive gene expression analyses to develop targeted treatment strategies for BD phenotypes., Competing Interests: The authors declare no conflict of interest., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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75. Anti-Inflammatory, Antioxidant and Neuroprotective Effects of Niacin on Mild Traumatic Brain Injury in Rats.
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Ozaydin D, Bektasoglu PK, Koyuncuoglu T, Ozkaya SC, Koroglu AK, Akakin D, Erzik C, Yuksel M, Yegen BC, and Gurer B
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- Rats, Animals, Antioxidants pharmacology, Antioxidants therapeutic use, Interleukin-10 therapeutic use, Rats, Wistar, Luminol therapeutic use, Anti-Inflammatory Agents pharmacology, Anti-Inflammatory Agents therapeutic use, Cytokines, Disease Models, Animal, Brain Concussion drug therapy, Brain Injuries pathology, Neuroprotective Agents pharmacology, Neuroprotective Agents therapeutic use, Niacin pharmacology, Niacin therapeutic use, Brain Injuries, Traumatic drug therapy, Brain Injuries, Traumatic pathology
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Aim: To study the effects of niacin, a water-soluble vitamin, on inflammation, oxidative stress and apoptotic processes observed after mild traumatic brain injury (TBI)., Material and Methods: A total of 25 Wistar albino male rats were randomly divided into control (n=9), TBI + Placebo group (n=9), TBI + niacin (500 mg/kg; n=7) groups. Mild TBI was performed under anesthesia by dropping a 300 g weight from a height of 1 meter onto the skull. Behavioral tests were applied before and 24 hours after TBI. Luminol and lucigenin levels and tissue cytokine levels were measured. Histopathological damage was scored in brain tissue., Results: After mild TBI, luminol and lucigenin levels were increased (p < 0.001), and their levels were decreased with niacin treatment (p < 0.01-p < 0.001). An increased score was obtained with trauma in the tail suspension test (p < 0.01), showing depressive behavior. The number of entries to arms in Y-maze test were decreased in TBI group compared to pre-traumatic values (p < 0.01), while discrimination (p < 0.05) and recognition indices (p < 0.05) in object recognition test were decreased with trauma, but niacin treatment did not change the outcomes in behavioral tests. Levels of the anti-inflammatory cytokine IL-10 were decreased with trauma, and increased with niacin treatment (p < 0.05). The histological damage score was increased with trauma (p < 0.001), and decreased with niacin treatment in the cortex (p < 0.05), and hippocampal dentate gyrus region (p < 0.01)., Conclusion: Niacin treatment after mild TBI inhibited trauma-induced production of reactive oxygen derivatives and elevated the anti-inflammatory IL-10 level. Niacin treatment ameliorated the histopathologically evident damage.
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- 2023
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76. Analyses of Copy Number Variations in Myxopapillary Ependymomas of Cauda Equina.
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Ozen A, Bayrakli F, Sonmez O, Eyuboglu IP, Erdogan O, Erzik C, Yakicier MC, and Bozkurt SU
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- Adult, Cauda Equina pathology, Cohort Studies, DNA Copy Number Variations, Female, Humans, Male, Middle Aged, Ependymoma genetics, Spinal Cord Neoplasms genetics
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Aim: To identify the copy number variations that are specific to myxopapillary ependymomas (MPEs) of the cauda equina., Material and Methods: The patient cohort included five patients who underwent resection of histologically confirmed MPEs. Tumor samples collected during surgery and stored in liquid nitrogen as well as corresponding blood samples collected were analyzed. Genomic DNA from the venous blood and tumor samples was obtained using standard techniques and hybridized to a Cytoscan 750K Array in accordance with the manufacturer’s introductions., Results: As a novel finding, amplification on chromosome 14q32.33 was detected in all tumor and blood samples, except one tumor sample. All tumor tissues also showed amplification on chromosomes 5, 7, 9, and 16., Conclusion: Although further studies with larger cohorts are required to identify genes involved in MPE tumorigenesis and to validate our results, these findings provide a basis for advanced molecular biological and genetic studies of MPEs.
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- 2020
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77. Antioxidant effect of alpha-lipoic acid against ethanol-induced gastric mucosal erosion in rats.
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Sehirli O, Tatlidede E, Yüksel M, Erzik C, Cetinel S, Yeğen BC, and Sener G
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- Animals, Antioxidants therapeutic use, Female, Gastric Mucosa pathology, Lipid Peroxidation drug effects, Lipid Peroxidation physiology, Male, Rats, Rats, Wistar, Reactive Oxygen Species metabolism, Stomach Ulcer chemically induced, Stomach Ulcer drug therapy, Stomach Ulcer metabolism, Thioctic Acid therapeutic use, Antioxidants pharmacology, Ethanol toxicity, Gastric Mucosa drug effects, Gastric Mucosa metabolism, Thioctic Acid pharmacology
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Background/aims: This investigation elucidates the role of free radicals in ethanol-induced gastric mucosal erosion and the protective effect of lipoic acid., Methods: After overnight fasting, Wistar albino rats were orally treated with 1 ml of absolute ethanol to induce gastric erosion. Lipoic acid (100 mg/kg) was given orally for 3 days before ethanol administration. Mucosal damage was evaluated 1 h after ethanol administration by macroscopic examination and histological analysis. Additional tissue samples were taken for measurement of malondialdehyde, glutathione (GSH), and myeloperoxidase activity. Production of reactive oxidants and oxidant-induced DNA fragmentation and Na(+),K(+)-ATPase activity were also assayed in the tissue samples., Results: Generation of reactive oxygen species and lipid peroxidation associated with neutrophil infiltration play an important role in the pathogenesis of gastric mucosal damage induced by ethanol. Furthermore, oxidants depleted tissue GSH stores and impaired membrane structure as Na(+),K(+)-ATPase activity was inhibited. On the other hand, lipoic acid treatment reversed all these biochemical indices as well as the histopathological changes induced by ethanol., Conclusion: These data suggest that lipoic acid administration effectively counteracts the deleterious effect of ethanol-induced gastric mucosal injury and attenuates gastric damage through its antioxidant effects., ((c) 2008 S. Karger AG, Basel.)
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- 2008
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78. Effect of hormone replacement therapy on plasma lipoproteins and apolipoproteins, endothelial function and myocardial perfusion in postmenopausal women with estrogen receptor-alpha IVS1-397 C/C genotype and established coronary artery disease.
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Emre A, Sahin S, Erzik C, Nurkalem Z, Oz D, Cirakoglu B, Yesilcimen K, and Ersek B
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- Brachial Artery physiology, Coronary Artery Disease blood, Coronary Artery Disease genetics, Coronary Artery Disease physiopathology, Cross-Over Studies, Double-Blind Method, Estradiol blood, Female, Genotype, Humans, Middle Aged, Polymorphism, Genetic, Postmenopause blood, Postmenopause physiology, Progesterone blood, Vasodilation drug effects, Apolipoproteins blood, Endothelium, Vascular drug effects, Estrogen Receptor alpha genetics, Hormone Replacement Therapy, Lipoproteins blood, Postmenopause drug effects
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Unlabelled: Effect of hormone replacement (HRT) therapy on plasma lipoproteins and apolipoproteins, endothelial function and myocardial perfusion in postmenopausal women with estrogen receptor-alpha (ER-alpha) IVS1-397 C/C genotype and established coronary artery disease., Background/aims: Associations between various ER-alpha polymorphisms and clinical phenotypes have been studied, including lipid levels and coronary atherosclerosis. We studied 48 postmenopausal women to determine the effect of ER-alpha IVS1-397 polymorphism on the response to treatment with HRT., Methods: The study had a randomized, double-blind, placebo-controlled and crossover design. Patients were divided into two groups according to ER-alpha IVS1-397 polymorphism: CC genotype (n = 9); CT or TT genotype (n = 39). HRT was given continuously for 4 weeks, with 4-week washout periods between the treatment periods. Brachial artery Doppler and Tl-201 scintigraphy were performed at the end of each treatment period., Results: HRT lowered total cholesterol, LDL-c and Apo-B levels from baseline values (all p < 0.05) and to a similar degree in CC and CT/TT genotype patients. HRT increased estradiol, HDL-c and Apo A-1 levels relative to baseline values, but to a greater degree in CC patients (p = 0.04, 0.05 and 0.04 by ANOVA, respectively). HRT increased peak forearm blood flow, brachial artery diameter during reactive hyperemia and endothelium-dependent dilation in both groups, but to a greater degree in CC patients (p = 0.03, 0.03 and 0.04 by ANOVA, respectively). Summed stress and rest scores were also more markedly reduced in CC patients (p = 0.04 and 0.05, respectively). The increase in estradiol levels was strongly correlated with the improvement in endothelium-dependent dilation (r = 0.66, p < 0.01), which in turn showed negative correlation with summed stress (r = -0.62, p < 0.01) and rest scores (r = -0.52, p < 0.05) in the CC genotype group., Conclusion: These data suggest that the improvement in endothelium-dependent dilation and the reduction in perfusion abnormalities by increasing estradiol levels with HRT in postmenopausal women with coronary artery disease may differ with respect to different genotypes, the effect being more prominent in those patients with ER-alpha IVS1-397 CC genotype., (Copyright 2006 S. Karger AG, Basel)
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- 2006
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