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Whole-genome-shotgun (WGS) sequencing of total genomic DNA was used to recover ~1 Mbp of novel mitochondrial (mtDNA) sequence from Pinus sylvestris (L.) and three members of the closely related Pinus mugo species complex. DNA was extracted from megagametophyte tissue from six mother trees from locations across Europe, and 100-bp paired-end sequencing was performed on the Illumina HiSeq platform. Candidate mtDNA sequences were identified by their size and coverage characteristics, and by comparison with published plant mitochondrial genomes. Novel variants were identified, and primers targeting these loci were trialled on a set of 28 individuals from across Europe. In total, 31 SNP loci were successfully resequenced, characterizing 15 unique haplotypes. This approach offers a cost-effective means of developing marker resources for mitochondrial genomes in other plant species where reference sequences are unavailable.

The ability of a population to genetically adapt to a changing environment is contingent not only on the level of existing genetic variation within that population, but also on the gene flow received from differently adapted populations. Effective pollen-mediated gene flow among plant populations requires synchrony of flowering. Therefore differences in timing of flowering among genetically divergent populations may reduce their ability to adapt to environmental change. To determine whether gene flow among differently adapted populations of native Scots pine (Pinus sylvestris) in Scotland was restricted by differences in their flowering phenology, we measured timing of pollen release among populations spanning a steep environmental gradient over three consecutive seasons (2014–2016). Results showed that, over a distance of 137 km, there were as many as 15.8 days’ difference among populations for the predicted timing of peak pollen shedding, with the earliest development in the warmer west of the country. There was much variation between years, with the earliest development and least synchrony in the warmest year (2014) and latest development and greatest synchrony in the coolest year (2015). Timing was negatively correlated with results from a common-garden experiment, indicative of a pattern of countergradient variation. We conclude that the observed differences in reproductive synchrony were sufficient to limit gene flow via pollen between populations of P. sylvestris at opposite ends of the environmental gradient across Scotland. We also hypothesize that continually warming, or asymmetrically warming spring temperatures will decrease reproductive synchrony among pine populations.

Landscape heterogeneity in floral communities has the potential to modify pollinator behavior. Pollinator foraging varies with the diversity, abundance, and spatial configuration of floral resources. However, the implications of this variation for pollen transfer and ultimately the reproductive success of insect pollinated plants remains unclear, especially for species which are rare or isolated in the landscape. We used a landscape-scale experiment, coupled with microsatellite genotyping, to explore how the floral richness of habitats affected pollinator behavior and pollination effectiveness. Small arrays of the partially self-compatible plant Californian poppy (Eschscholzia californica) were introduced across a landscape gradient to simulate rare, spatially isolated populations. The effects on pollinator activity, outcrossing, and plant reproduction were measured. In florally rich habitats, we found reduced pollen movement between plants, leading to fewer long-distance pollination events, lower plant outcrossing, and a higher incidence of pollen limitation. This pattern indicates a potential reduction in per capita pollinator visitation, as suggested by the lower activity densities and richness of pollinators observed within florally rich habitats. In addition, seed production reduced by a factor of 1.8 in plants within florally rich habitats and progeny germination reduced by a factor of 1.2. We show this to be a consequence of self-fertilization within the partially self-compatible plant, E. californica. These findings indicate that locally rare plants are at a competitive disadvantage within florally rich habitats because neighboring plant species disrupt conspecific mating by co-opting pollinators. Ultimately, this Allee effect may play an important role in determining the long-term persistence of rarer plants in the landscape, both in terms of seed production and viability. Community context therefore requires consideration when designing and implementing co

In recent years, British seed sourcing practice has tended to focus on the principle that “local-is-best” for native woodland creation. However, in the face of continuing and accelerating environmental change, the suitability of this approach has been called into question. In this article, we investigate the relevance and suitability of a series of seed sourcing strategies: maintaining the status quo by continuing to source local origin seed, sourcing seed from currently warmer locations, and the addition or replacement of species. Our main findings are that there are opportunities to increase the sophistication of existing guidance and that improvements would be timely. In any case, an important consideration is the capacity for newly established populations of trees to survive immediately and amidst increasingly variable environmental conditions. The current paucity of knowledge of forest genetic resources in British populations of native tree species suggests that deviations from sourcing currently adapted planting stock are not uniformly applicable throughout the country and that any change to policy ought to be applied judiciously and only under a restricted set of circumstances.

Spatial heterogeneity in pathogen pressure leads to genetic variation in, and evolution of, disease-related traits among host populations. In contrast, hosts are expected to be highly susceptible to exotic pathogens as there has been no evolution of defence responses. Host response to pathogens can therefore be an indicator of a novel or endemic pathosystem. Currently, the most significant threat to native British Scots pine (Pinus sylvestris) forests is Dothistroma needle blight (DNB) caused by the foliar pathogen Dothistroma septosporum which is presumed to be exotic. A progeny–provenance trial of 6-year-old Scots pine, comprising eight native provenances each with four families in six blocks, was translocated in April 2013 to a clear-fell site in Galloway adjacent to a DNB-infected forest. Susceptibility to D. septosporum, measured as DNB severity (estimated percentage nongreen current-year needles), was assessed visually over 2 years (2013–2014 and 2014–2015; two assessments per year). There were highly significant differences in susceptibility among provenances but not among families for each annual assessment. Provenance mean susceptibility to D. septosporum was negatively and significantly associated with water-related variables at site of origin, potentially due to the evolution of low susceptibility in the host in response to high historical pathogen pressure.

Restoring deadwood habitat is vital in order to recreate fully functioning forest ecosystems. Letting this process occur naturally can take in excess of one hundred years, thus management practises typically try to accelerate this via the artificial addition of deadwood. Since the species which rely on deadwood often have poor dispersal abilities, restoring deadwood habitat rarely results in the full restoration of the saproxylic fauna. Furthermore, standard deadwood monitoring protocol only records the amount and type of substrate available and is not capable of determining whether saproxylic insects have been restored. Full species inventories are time-consuming, costly and require great expertise. We present a rapid biodiversity assessment tool which we believe is the first protocol for measuring saproxylic activity which is accessible to non-specialists. Utilising the exit bore holes which saproxylics create on deadwood can provide an indication of the density, richness and diversity of species present; we call this the Saproxylic Activity Index. We show that this index can detect differences in the activity of insects between substrates. As saproxylic insects provide important ecosystem functions, such as aiding in the decay of deadwood and recycling nutrients, a measure of their activity levels may indicate the rate of restoration of these ecosystem processes. We believe that further exploration of this method provides an exciting opportunity for the functional restoration of saproxylic fauna to become incorporated into mainstream forest management

Restoring deadwood habitat is vital in order to recreate fully functioning forest ecosystems. Letting this process occur naturally can take in excess of one hundred years, thus management practises typically try to accelerate this via the artificial addition of deadwood. Since the species which rely on deadwood often have poor dispersal abilities, restoring deadwood habitat rarely results in the full restoration of the saproxylic fauna. Furthermore, standard deadwood monitoring protocol only records the amount and type of substrate available and is not capable of determining whether saproxylic insects have been restored. Full species inventories are time-consuming, costly and require great expertise. We present a rapid biodiversity assessment tool which we believe is the first protocol for measuring saproxylic activity which is accessible to non-specialists. Utilising the exit bore holes which saproxylics create on deadwood can provide an indication of the density, richness and diversity of species present; we call this the Saproxylic Activity Index. We show that this index can detect differences in the activity of insects between substrates. As saproxylic insects provide important ecosystem functions, such as aiding in the decay of deadwood and recycling nutrients, a measure of their activity levels may indicate the rate of restoration of these ecosystem processes. We believe that further exploration of this method provides an exciting opportunity for the functional restoration of saproxylic fauna to become incorporated into mainstream forest management

European white elm (Ulmus laevis Pallas) populations are scarce, small and fragmented in the Iberian Peninsula. Due to these characteristics the indigenous status of the species in the region has been questioned, whilst the species? role in Iberian riparian forest ecology has been neglected. Herein we review past studies regarding this species? distribution and ecology in the Iberian Peninsula, with special emphasis on the establishment of conservation priorities. We first present a collection of palaeogeographic, historic and genetic data suggesting that the Iberian Peninsula was a glacial refuge for U. laevis. Secondly, we analyse U. laevis distribution in relation to soil physico- chemical properties and water availability in Spain. Following this, we focus on the reproductive biology of the species, and investigate the effect of masting and empty seed production on predation and regeneration establishment. Finally, based on this knowledge, we propose conservation policies for U. laevis in the Iberian Peninsula.

Background: Genetic differentiation in phenotypic traits is often observed among forest tree populations, but less is known about patterns of adaptive variation within populations. Such variation is expected to enhance the survival likelihood of extant populations under climate change. Aims: Scots pine (Pinus sylvestris) occurs over a spatially and temporally heterogeneous landscape in Scotland. Our goal was to examine whether populations had differentiated genetically in timing of bud flush in response to spatial heterogeneity and whether variation was also maintained within populations. Methods: Two common-garden studies, involving maternal families of seedlings from 21 native pinewoods, were established and variation in the trait was measured at the beginning of the second growing season. Results: Populations showed genetic differences in the trait correlated with the length of growing season at their site of origin, but the majority of variation was observed within populations. Populations also differed in their levels of variation in the trait; a pattern that may be influenced by spatial variation in the extent of temporal climate variability. Conclusions: Our findings suggest that populations have adapted to their home environments and that they also have substantial ability to adapt in situ to changes in growing season length.

Human activities have deeply transformed the Mediterranean landscape for millennia. Wetland and riverbed vegetation are among the most affected ecosystems because of the value of these areas for agriculture, due to their rich soil and water availability. This has caused the fragmentation, population reduction, and extinction of many species. We focus our study on Ulmus laevis Pallas, an endangered tree species in the Iberian Peninsula, as an extreme example of these formations. We study the diversity and fine-scale spatial genetic structure of two human disturbed wetland populations with chloroplast markers and nuclear microsatellites. We evaluate their recovery possibilities, and how they will be affected by future aridification and water table depletion. Our results show that although these populations have suffered bottlenecks and have low genetic diversity, they maintain the same diversity levels as the European populations. Despite the low genetic variation that could contribute to inbreeding problems in the future, we discuss that the main threat of the species is habitat destruction. Finally, we propose some management and conservation policies to ameliorate these effects.

Environment-driven genetic differentiation among populations is a common feature among forest trees, and an understanding of how populations have adapted to their home site conditions is essential for management and conservation practices. In Scotland, 84 native Scots pine (Pinus sylvestris L.) woodlands are recognized by the Forestry Commission and they occupy highly diverse environments from the maritime west coast to continental sites in eastern Scotland. However, it is not known whether adaptations to local environments along sharp temperature and rainfall gradients have occurred in different populations and as a result, the seed transfer guidelines of the species are based on data from isozymes and monoterpenes. In this study, we used chlorophyll fluorescence to examine whether seedlings from 32 open-pollinated families and eight populations from sites experiencing contrasting annual temperature regimes differed in their response to variation in natural outdoor temperatures between September 2009 and May 2010. In addition, growth initiation in spring was recorded. Photochemical capacity at photosystem II (Fv/Fm) showed a distinct seasonal trend and remained at relatively high levels (~0.7) until December. Following a period of two weeks with temperatures below 0°C, (Fv/Fm) started decreasing towards its minimum values recorded in early March when population means varied between 0.35 and 0.45. By early May and along with rising temperatures, photochemical capacity had recovered to the same level as observed in early December. Populations were found to respond differently to the cold period starting in December. The largest drop in photochemical capacity was observed in seedlings from a low-altitude population located in the maritime western Scotland, while in seedlings from higher-altitude locations in the cooler eastern Scotland, the response was smaller. In March, the recovery of photochemical capacity was slowest in seedlings from the mildest and coolest site

Scots pine (Pinus sylvestris L.) is a foundation species in Scottish highland forests and a national icon. Due to heavy exploitation, the current native pinewood coverage represents a small fraction of the postglacial maximum. To reverse this decline, various schemes have been initiated to promote planting of new and expansion of old pinewoods. This includes the designation of seed zones for control of the remaining genetic resources. The zoning was based mainly on biochemical similarity among pinewoods but, by definition, neutral molecular markers do not reflect local phenotypic adaptation. Environmental variation within Scotland is substantial and it is not yet clear to what extent this has shaped patterns of adaptive differentiation among Scottish populations. Systematic, rangewide common-environment trials can provide insights into the evolution of the native pinewoods, indicating how environment has influenced phenotypic variation and how variation is maintained. Careful design of such experiments can also provide data on the history and connectivity among populations, by molecular marker analysis. Together, phenotypic and molecular datasets from such trials can provide a robust basis for refining seed transfer guidelines for Scots pine in Scotland and should form the scientific basis for conservation action on this nationally important habitat.