11,573 results on '"England, P."'
Search Results
52. Data Augmentation for Mathematical Objects
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del Rio, Tereso and England, Matthew
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Computer Science - Symbolic Computation ,Computer Science - Machine Learning ,68W30, 68T05, 03C10 ,I.2.6 ,I.1.1 - Abstract
This paper discusses and evaluates ideas of data balancing and data augmentation in the context of mathematical objects: an important topic for both the symbolic computation and satisfiability checking communities, when they are making use of machine learning techniques to optimise their tools. We consider a dataset of non-linear polynomial problems and the problem of selecting a variable ordering for cylindrical algebraic decomposition to tackle these with. By swapping the variable names in already labelled problems, we generate new problem instances that do not require any further labelling when viewing the selection as a classification problem. We find this augmentation increases the accuracy of ML models by 63% on average. We study what part of this improvement is due to the balancing of the dataset and what is achieved thanks to further increasing the size of the dataset, concluding that both have a very significant effect. We finish the paper by reflecting on how this idea could be applied in other uses of machine learning in mathematics., Comment: 10 pages. To be presented at the 2023 SC-Square Workshop
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- 2023
53. Generating Elementary Integrable Expressions
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Barket, Rashid, England, Matthew, and Gerhard, Jürgen
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Computer Science - Symbolic Computation ,Computer Science - Machine Learning ,68W30, 68T05 ,I.2.6 ,I.1.1 - Abstract
There has been an increasing number of applications of machine learning to the field of Computer Algebra in recent years, including to the prominent sub-field of Symbolic Integration. However, machine learning models require an abundance of data for them to be successful and there exist few benchmarks on the scale required. While methods to generate new data already exist, they are flawed in several ways which may lead to bias in machine learning models trained upon them. In this paper, we describe how to use the Risch Algorithm for symbolic integration to create a dataset of elementary integrable expressions. Further, we show that data generated this way alleviates some of the flaws found in earlier methods., Comment: To appear in proceedings of CASC 2023. This version of the contribution has been accepted for publication, after peer review but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections
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- 2023
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54. PDP Insights: Credit Accumulation and Completion Rates among First-Year College Students
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National Student Clearinghouse, Odle, T. K., Dundar, A., Shapiro, D., Chen, X., and England, B.
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The Postsecondary Data Partnership (PDP) is a service of the National Student Clearinghouse established in 2017 to empower institutions with more comprehensive data, easier analysis, centralized reporting functions, and interactive visualizations. Since its inception, over 500 colleges and universities have participated in the PDP. The 2022 PDP Insights report focuses on two primary metrics: students' first year credit completion ratio (CCR) and credit accumulation rate (CAR). The CCR is the ratio of credits earned to credits attempted. This measure of student success and credit attainment can provide insights into students' overall course completion outcomes and measure the efficiency of students' movement through coursework. The CAR directly measures students' timely accumulation of college credits by identifying the share of students who surpassed specific credit-hour thresholds within a given period. This early momentum measure can offer insights into students' progression toward degree completion and provide indicators of when and where gaps in ultimate degree attainment between groups may begin. Students in this analysis are first-time (including first-time in college and first-time, transfer-in), degree-seeking students entering a PDP-participating institution in the 2019-20 cohort.
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- 2022
55. Evidence for large-scale climate forcing of dense shelf water variability in the Ross Sea
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Zhang, Zhaoru, Xie, Chuan, Castagno, Pasquale, England, Matthew H., Wang, Xiaoqiao, Dinniman, Michael S., Silvano, Alessandro, Wang, Chuning, Zhou, Lei, Li, Xichen, Zhou, Meng, and Budillon, Giorgio
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- 2024
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56. A portable multi-taxa phenotyping device to retrieve physiological performance traits
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England, Hadley, Herdean, Andrei, Matthews, Jennifer, Hughes, David J., Roper, Christine D., Suggett, David J., Voolstra, Christian R., and Camp, Emma F.
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- 2024
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57. Computer numerical control knitting of high-resolution mosquito bite blocking textiles
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Holt, Bryan, Oswalt, Kyle, England, Alexa, Murphy, Richard, Owens, Isabella, Finney, Micaela, Wong, Natalie, Adhikari, Sushil, McCann, James, and Beckmann, John
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- 2024
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58. Stronger Arctic amplification from anthropogenic aerosols than from greenhouse gases
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Wu, You-Ting, Liang, Yu-Chiao, Previdi, Michael, Polvani, Lorenzo M., England, Mark R., Sigmond, Michael, and Lo, Min-Hui
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- 2024
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59. Evaluation of mRNA-LNP and adjuvanted protein SARS-CoV-2 vaccines in a maternal antibody mouse model
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England, Ross N., Drapeau, Elizabeth M., Alameh, Mohamad-Gabriel, Hosseinzadeh, Reihaneh, Weissman, Drew, and Hensley, Scott E.
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- 2024
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60. Pupal Exuviae of Culex Pipiens L. (Diptera: Culicidae) Can be Utilised as a Non-Invasive Method of Biotype Differentiation
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Jones, Laura, Sanders, Christopher, England, Marion, Cameron, Mary, and Carpenter, Simon
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- 2024
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61. Time series of freshwater macroinvertebrate abundances and site characteristics of European streams and rivers
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Welti, Ellen A. R., Bowler, Diana E., Sinclair, James S., Altermatt, Florian, Álvarez-Cabria, Mario, Amatulli, Giuseppe, Angeler, David G., Archambaud, Gaït, Arrate Jorrín, Iñaki, Aspin, Thomas, Azpiroz, Iker, Baker, Nathan Jay, Bañares, Iñaki, Barquín Ortiz, José, Bodin, Christian L., Bonacina, Luca, Bonada, Núria, Bottarin, Roberta, Cañedo-Argüelles, Miguel, Csabai, Zoltán, Datry, Thibault, de Eyto, Elvira, Dohet, Alain, Domisch, Sami, Dörflinger, Gerald, Drohan, Emma, Eikland, Knut A., England, Judy, Eriksen, Tor E., Evtimova, Vesela, Feio, Maria J., Ferréol, Martial, Floury, Mathieu, Forcellini, Maxence, Forio, Marie Anne Eurie, Fornaroli, Riccardo, Friberg, Nikolai, Fruget, Jean-François, Garcia Marquez, Jaime R., Georgieva, Galia, Goethals, Peter, Graça, Manuel A. S., House, Andy, Huttunen, Kaisa-Leena, Jensen, Thomas Correll, Johnson, Richard K., Jones, J. Iwan, Kiesel, Jens, Larrañaga, Aitor, Leitner, Patrick, L’Hoste, Lionel, Lizée, Marie-Hélène, Lorenz, Armin W., Maire, Anthony, Manzanos Arnaiz, Jesús Alberto, Mckie, Brendan, Millán, Andrés, Muotka, Timo, Murphy, John F., Ozolins, Davis, Paavola, Riku, Paril, Petr, Peñas Silva, Francisco Jesús, Polasek, Marek, Rasmussen, Jes, Rubio, Manu, Sánchez Fernández, David, Sandin, Leonard, Schäfer, Ralf B., Schmidt-Kloiber, Astrid, Scotti, Alberto, Shen, Longzhu Q., Skuja, Agnija, Stoll, Stefan, Straka, Michal, Stubbington, Rachel, Timm, Henn, Tyufekchieva, Violeta G., Tziortzis, Iakovos, Uzunov, Yordan, van der Lee, Gea H., Vannevel, Rudy, Varadinova, Emilia, Várbíró, Gábor, Velle, Gaute, Verdonschot, Piet F. M., Verdonschot, Ralf C. M., Vidinova, Yanka, Wiberg-Larsen, Peter, and Haase, Peter
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- 2024
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62. Electric-field-assisted proton coupling enhanced oxygen evolution reaction
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Pan, Xuelei, Yan, Mengyu, Liu, Qian, Zhou, Xunbiao, Liao, Xiaobin, Sun, Congli, Zhu, Jiexin, McAleese, Callum, Couture, Pierre, Sharpe, Matthew K., Smith, Richard, Peng, Nianhua, England, Jonathan, Tsang, Shik Chi Edman, Zhao, Yunlong, and Mai, Liqiang
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- 2024
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63. Anaerobic fungi in the tortoise alimentary tract illuminate early stages of host-fungal symbiosis and Neocallimastigomycota evolution
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Pratt, Carrie J., Meili, Casey H., Jones, Adrienne L., Jackson, Darian K., England, Emma E., Wang, Yan, Hartson, Steve, Rogers, Janet, Elshahed, Mostafa S., and Youssef, Noha H.
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- 2024
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64. Communities catalyzing change with data to mitigate an invisible menace, traffic-related air pollution
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Sprague Martinez, Linda, Ginzburg, Shir Lerman, Ron, Sharon, Brinkerhoff, Cristina Araujo, Haque, Samiya, England, Sophia Angali, Khimani, Kynza, Zamore, Wig, Reisner, Ellin, Lowe, Lydia, and Brugge, Doug
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- 2024
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65. A monoclonal antibody collection for C. difficile typing ?
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Hunault, Lise, England, Patrick, Barbut, Frédéric, Iannascoli, Bruno, Godon, Ophélie, Déjardin, François, Thomas, Christophe, Dupuy, Bruno, Guo, Chunguang, Macdonald, Lynn, Gorochov, Guy, Sterlin, Delphine, and Bruhns, Pierre
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- 2024
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66. PvDBPII elicits multiple antibody-mediated mechanisms that reduce growth in a Plasmodium vivax challenge trial
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Martinez, Francisco J., White, Michael, Guillotte-Blisnick, Micheline, Huon, Christèle, Boucharlat, Alix, Agou, Fabrice, England, Patrick, Popovici, Jean, Hou, Mimi M., Silk, Sarah E., Barrett, Jordan R., Nielsen, Carolyn M., Reimer, Jenny M., Mukherjee, Paushali, Chauhan, Virander S., Minassian, Angela M., Draper, Simon J., and Chitnis, Chetan E.
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- 2024
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67. Antigen self-anchoring onto bacteriophage T5 capsid-like particles for vaccine design
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Vernhes, Emeline, Larbi Chérif, Linda, Ducrot, Nicolas, Vanbergue, Clément, Ouldali, Malika, Zig, Lena, Sidibe, N’diaye, Hoos, Sylviane, Ramirez-Chamorro, Luis, Renouard, Madalena, Rossier, Ombeline, England, Patrick, Schoehn, Guy, Boulanger, Pascale, and Benihoud, Karim
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- 2024
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68. Patterns of Gender Development Across Intersections of Age, Gender, and Ethnicity-Race
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Nielson, Matthew G., Martin, Carol Lynn, England, Dawn E., Hanish, Laura D., Santos, Carlos E., Delay, Dawn, Updegraff, Kimberly A., and Rogers, Adam A.
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- 2024
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69. Digenic inheritance involving a muscle-specific protein kinase and the giant titin protein causes a skeletal muscle myopathy
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Töpf, Ana, Cox, Dan, Zaharieva, Irina T., Di Leo, Valeria, Sarparanta, Jaakko, Jonson, Per Harald, Sealy, Ian M., Smolnikov, Andrei, White, Richard J., Vihola, Anna, Savarese, Marco, Merteroglu, Munise, Wali, Neha, Laricchia, Kristen M., Venturini, Cristina, Vroling, Bas, Stenton, Sarah L., Cummings, Beryl B., Harris, Elizabeth, Marini-Bettolo, Chiara, Diaz-Manera, Jordi, Henderson, Matt, Barresi, Rita, Duff, Jennifer, England, Eleina M., Patrick, Jane, Al-Husayni, Sundos, Biancalana, Valerie, Beggs, Alan H., Bodi, Istvan, Bommireddipalli, Shobhana, Bönnemann, Carsten G., Cairns, Anita, Chiew, Mei-Ting, Claeys, Kristl G., Cooper, Sandra T., Davis, Mark R., Donkervoort, Sandra, Erasmus, Corrie E., Fassad, Mahmoud R., Genetti, Casie A., Grosmann, Carla, Jungbluth, Heinz, Kamsteeg, Erik-Jan, Lornage, Xavière, Löscher, Wolfgang N., Malfatti, Edoardo, Manzur, Adnan, Martí, Pilar, Mongini, Tiziana E., Muelas, Nuria, Nishikawa, Atsuko, O’Donnell-Luria, Anne, Ogonuki, Narumi, O’Grady, Gina L., O’Heir, Emily, Paquay, Stéphanie, Phadke, Rahul, Pletcher, Beth A., Romero, Norma B., Schouten, Meyke, Shah, Snehal, Smuts, Izelle, Sznajer, Yves, Tasca, Giorgio, Taylor, Robert W., Tuite, Allysa, Van den Bergh, Peter, VanNoy, Grace, Voermans, Nicol C., Wanschitz, Julia V., Wraige, Elizabeth, Yoshimura, Kimihiko, Oates, Emily C., Nakagawa, Osamu, Nishino, Ichizo, Laporte, Jocelyn, Vilchez, Juan J., MacArthur, Daniel G., Sarkozy, Anna, Cordell, Heather J., Udd, Bjarne, Busch-Nentwich, Elisabeth M., Muntoni, Francesco, and Straub, Volker
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- 2024
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70. Clinical Features and Long-Term Outcomes of a Pan-Canadian Cohort of Adolescents and Young Adults with Myeloproliferative Neoplasms: A Canadian MPN Group Study
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England, James T., Szuber, Natasha, Sirhan, Shireen, Dunne, Tom, Cerquozzi, Sonia, Hill, Madeleine, Villeneuve, Pierre J. A., Ho, Jenny M., Sadikovic, Bekim, Bhai, Pratibha, Krishnan, Nupur, Dowhanik, Sebastian, Hillis, Chris, Capo-Chichi, Jose-Mario, Tsui, Hubert, Cheung, Verna, Gauthier, Karine, Sibai, Hassan, Davidson, Marta B., Bankar, Aniket, Kotchetkov, Rouslan, Gupta, Vikas, and Maze, Dawn
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- 2024
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71. Ultrafast Measurement of Energy-Time Entanglement with an Optical Kerr Shutter
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Cameron, Andrew R., Fenwick, Kate L., Cheng, Sandra W. L., Schwarz, Sacha, MacLellan, Benjamin, Bustard, Philip J., England, Duncan, Sussman, Benjamin, and Resch, Kevin J.
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Quantum Physics - Abstract
Recent experimental progress in quantum optics has enabled measurement of single photons on ultrafast timescales, beyond the resolution limit of single photon detectors. The energy-time degree of freedom has emerged as a promising avenue for quantum technologies, as entanglement between the frequency and temporal properties of two photons can be fully explored and utilized. Here, we implement optical Kerr shutters in single mode fibers to map out the sub-picosecond correlations of energy-time entangled photon pairs. These measurements, in addition to joint spectral measurements of the photon pair state, are used to verify entanglement by means of the violation of a time-bandwidth inequality., Comment: 5 pages, 4 figures
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- 2023
72. Coronal Heating as Determined by the Solar Flare Frequency Distribution Obtained by Aggregating Case Studies
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Mason, James Paul, Werth, Alexandra, West, Colin G., Youngblood, Allison A., Woodraska, Donald L., Peck, Courtney, Lacjak, Kevin, Frick, Florian G., Gabir, Moutamen, Alsinan, Reema A., Jacobsen, Thomas, Alrubaie, Mohammad, Chizmar, Kayla M., Lau, Benjamin P., Dominguez, Lizbeth Montoya, Price, David, Butler, Dylan R., Biron, Connor J., Feoktistov, Nikita, Dewey, Kai, Loomis, N. E., Bodzianowski, Michal, Kuybus, Connor, Dietrick, Henry, Wolfe, Aubrey M., Guerrero, Matt, Vinson, Jessica, Starbuck, Peter, Litton, Shelby D, Beck, M. G., Fisch, Jean-Paul, West, Ayana, Muniz, Alexis A., Chavez, Luis, Upthegrove, Zachary T., Runyon, Brenton M., Salazar, J., Kritzberg, Jake E., Murrel, Tyler, Ho, Ella, LaFemina, Quintin Y., Elbashir, Sara I., Chang, Ethan C., Hudson, Zachary A., Nussbaum, Rosemary O., Kennedy, Kellen, Kim, Kevin, Arango, Camila Villamil, Albakr, Mohammed A., Rotter, Michael, Garscadden, A. J., Salcido-Alcontar JR, Antonio, Pearl, Harrison M., Stepaniak, Tyler, Marquez, Josie A., Marsh, Lauren, Andringa, Jesse C, Osogwin, Austin, Shields, Amanda M., Brookins, Sarah, Hach, Grace K., Clausi, Alexis R., Millican, Emily B., Jaimes, Alan A, Graham, Alaina S., Burritt, John J., Perez, J. S., Ramirez, Nathaniel, Suri, Rohan, Myer, Michael S., Kresek, Zoe M., Goldsberry, C. A., Payne, Genevieve K., Jourabchi, Tara, Hu, J., Lucca, Jeffrey, Feng, Zitian, Gilpatrick, Connor B., Khan, Ibraheem A., Warble, Keenan, Sweeney, Joshua D., Dorricott, Philip, Meyer, Ethan, Kothamdi, Yash S., Sohail, Arman S., Grell, Kristyn, Floyd, Aidan, Bard, Titus, Mathieson, Randi M., Reed, Joseph, Cisneros, Alexis, Payne, Matthew P., Jarriel, J. R., Mora, Jacqueline Rodriguez, Sundell, M. E., Patel, Kajal, Alesmail, Mohammad, Alnasrallah, Yousef A, Abdullah, Jumana T., Molina-Saenz, Luis, Tayman, K. E., Brown, Gabriel T., Kerr-Layton, Liana, Berriman-Rozen, Zachary D., Hiatt, Quinn, Kalra, Etash, Ong, Jason, Vadayar, Shreenija, Shannahan, Callie D., Benke, Evan, zhang, Jinhua, Geisman, Jane, Martyr, Cara, Ameijenda, Federico, Akruwala, Ushmi H., Nehring, Molly, Kissner, Natalie, Rule, Ian C., Learned, Tyler, Smith, Alexandra N., Mazzotta, Liam, Rounsefell, Tyndall, Eyeson, Elizabeth A., Shelby, Arlee K., Moll, Tyler S, Menke, Riley, Shahba, Hannan, House Jr., Tony A., Clark, David B., Burns, Annemarie C., de La Beaujardiere, Tristan, Trautwein, Emily D., Plantz, Will, Reeves, Justin, Faber, Ian, Buxton, B. W., Highhouse, Nigel, Landrey, Kalin, Hansen, Connor M, Chen, Kevin, Hales, Ryder Buchanan, Borgerding, Luke R., Guo, Mutian, Crow, Christian J., Whittall, Lloyd C., Simmons, Conor, Folarin, Adeduni, Parkinson, Evan J., Rahn, Anna L., Blevins, Olivia, Morelock, Annalise M., Kelly, Nicholas, Parker, Nathan L., Smith, Kelly, Plzak, Audrey E., Saeb, David, Hares, Cameron T., Parker, Sasha R., McCoy, Andrew, Pham, Alexander V., Lauzon, Megan, Kennedy, Cayla J., Reyna, Andrea B., Acosta, Daniela M. Meza, Cool, Destiny J., Steinbarth, Sheen L., Mendoza-Anselmi, Patricia, Plutt, Kaitlyn E., Kipp, Isabel M, Rakhmonova, M., Brown, Cameron L., Van Anne, Gabreece, Moss, Alexander P., Golden, Olivia, Kirkpatrick, Hunter B., Colleran, Jake R., Sullivan, Brandon J, Tran, Kevin, Carpender, Michael Andrew, Mundy, Aria T., Koenig, Greta, Oudakker, Jessica, Engelhardt, Rasce, Ales, Nolan, Wexler, Ethan Benjamin, Beato, Quinn I, Chen, Lily, Cochran, Brooke, Hill, Paula, Hamilton, Sean R., Hashiro, Kyle, Khan, Usman, Martinez, Alexa M., Brockman, Jennifer L., Mallory, Macguire, Reed, Charlie, Terrile, Richard, Singh, Savi, Watson, James Adam, Creany, Joshua B., Price, Nicholas K., Miften, Aya M., Tran, Bryn, Kamenetskiy, Margaret, Martinez, Jose R., Opp, Elena N., Huang, Jianyang, Fails, Avery M., Belei, Brennan J., Slocum, Ryan, Astalos, Justin, East, Andrew, Nguyen, Lena P., Pherigo, Callie C, East, Andrew N., Li, David Y., Nelson, Maya LI, Taylor, Nicole, Odbayar, Anand, Rives, Anna Linnea, Mathur, Kabir P., Billingsley, Jacob, Polikoff, Hyden, Driscoll, Michael, Wilson, Orion K., Lahmers, Kyle, Toon, Nathaniel J., Lippincott, Sam, Musgrave, Andrew J., Gregory, Alannah H., Pitsuean-Meier, Sedique, Jesse, Trevor, Smith, Corey, Miles, Ethan J., Kainz, Sabrina J. H. T., Ji, Soo Yeun, Nguyen, Lena, Aryan, Maryam, Dinser, Alexis M., Shortman, Jadon, Bastias, Catalina S, Umbricht, Thomas D, Cage, Breonna, Randolph, Parker, Pollard, Matthew, Simone, Dylan M., Aramians, Andrew, Brecl, Ariana E., Robert, Amanda M., Zenner, Thomas, Saldi, Maxwell, Morales, Gavin, Mendez, Citlali, Syed, Konner, Vogel, Connor Maklain, Cone, Rebecca A., Berhanu, Naomi, Carpenter, Emily, Leoni, Cecilia, Bryan, Samuel, Ramachandra, Nidhi, Shaw, Timothy, Lee, E. C., Monyek, Eli, Wegner, Aidan B., Sharma, Shajesh, Lister, Barrett, White, Jamison R., Willard, John S., Sulaiman, S. A, Blandon, Guillermo, Narayan, Anoothi, Ruger, Ryan, Kelley, Morgan A., Moreno, Angel J., Balcer, Leo M, Ward-Chene, N. R. D., Shelby, Emma, Reagan, Brian D., Marsh, Toni, Sarkar, Sucheta, Kelley, Michael P., Fell, Kevin, Balaji, Sahana, Hildebrand, Annalise K., Shoha, Dominick, Nandu, Kshmya, Tucker, Julia, Cancio, Alejandro R., Wang, Jiawei, Rapaport, Sarah Grace, Maravi, Aimee S., Mayer, Victoria A., Miller, Andrew, Bence, Caden, Koke, Emily, Fauntleroy, John T, Doermer, Timothy, Al-Ghazwi, Adel, Morgan, Remy, Alahmed, Mohammed S., Mathavan, Adam Izz Khan Mohd Reduan, Silvester, H. K., Weiner, Amanda M., Liu, Nianzi, Iovan, Taro, Jensen, Alexander V., AlHarbi, Yazeed A., Jiang, Yufan, Zhang, Jiaqi, Jones, Olivia M., Huang, Chenqi, Reh, Eileen N., Alhamli, Dania, Pettine, Joshua, Zhou, Chongrui, Kriegman, Dylan, Yang, Jianing, Ash, Kevin, Savage, Carl, Kaiser, Emily, Augenstein, Dakota N., Padilla, Jacqueline, Stark, Ethan K., Hansen, Joshua A., Kokes, Thomas, Huynh, Leslie, Sanchez-Sanchez, Gustavo, Jeseritz, Luke A., Carillion, Emma L., Vepa, Aditya V., Khanal, Sapriya, Behr, Braden, Martin, Logan S., McMullan, Jesse J., Zhao, Tianwei, Williams, Abigail K., Alqabani, Emeen, Prinster, Gale H., Horne, Linda, Ruggles-Delgado, Kendall, Otto, Grant, Gomez, Angel R., Nguyen, Leonardo, Brumley, Preston J., Venegas, Nancy Ortiz, Varela, Ilian, Brownlow, Jordi, Cruz, Avril, Leiker, Linzhi, Batra, Jasleen, Hutabarat, Abigail P., Nunes-Valdes, Dario, Jameson, Connor, Naqi, Abdulaziz, Adams, Dante Q., Biediger, Blaine B., Borelli, William T, Cisne, Nicholas A., Collins, Nathaniel A., Curnow, Tyler L., Gopalakrishnan, Sean, Griffin, Nicholas F., Herrera, Emanuel, McGarvey, Meaghan V., Mellett, Sarah, Overchuk, Igor, Shaver, Nathan, Stratmeyer, Cooper N., Vess, Marcus T., Juels, Parker, Alyami, Saleh A., Gale, Skylar, Wallace, Steven P., Hunter, Samuel C, Lonergan, Mia C., Stewart, Trey, Maksimuk, Tiffany E., Lam, Antonia, Tressler, Judah, Napoletano, Elena R., Miller, Joshua B., Roy, Marc G., Chanders, Jasey, Fischer, Emmalee, Croteau, A. J., Kuiper, Nicolas A., Hoffman, Alex, DeBarros, Elyse, Curry, Riley T., Brzostowicz, A., Courtney, Jonas, Zhao, Tiannie, Szabo, Emi, Ghaith, Bandar Abu, Slyne, Colin, Beck, Lily, Quinonez, Oliver, Collins, Sarah, Madonna, Claire A., Morency, Cora, Palizzi, Mallory, Herwig, Tim, Beauprez, Jacob N., Ghiassi, Dorsa, Doran, Caroline R., Yang, Zhanchao, Padgette, Hannah M., Dicken, Cyrus A., Austin, Bryce W., Phalen, Ethan J., Xiao, Catherine, Palos, Adler, Gerhardstein, Phillip, Altenbern, Ava L., Orbidan, Dan, Dorr, Jackson A., Rivas, Guillermo A., Ewing, Calvin A, Giebner, B. C., McEntee, Kelleen, Kite, Emily R., Crocker, K. A., Haley, Mark S., Lezak, Adrienne R., McQuaid, Ella, Jeong, Jacob, Albaum, Jonathan, Hrudka, E. M., Mulcahy, Owen T., Tanguma, Nolan C., Oishi-Holder, Sean, White, Zachary, Coe, Ryan W., Boyer, Christine, Chapman, Mitchell G., Fortino, Elise, Salgado, Jose A., Hellweg, Tim, Martinez, Hazelia K., Mitchell, Alexander J., Schubert, Stephanie H., Schumacher, Grace K, Tesdahl, Corey D, Uphoff, C. H., Vassilyev, Alexandr, Witkoff, Briahn, Wolle, Jackson R., Dice, Kenzie A., Behrer, Timothy A., Bowen, Troy, Campbell, Andrew J, Clarkson, Peter C, Duong, Tien Q., Hawat, Elijah, Lopez, Christian, Olson, Nathaniel P., Osborn, Matthew, Peou, Munisettha E., Vaver, Nicholas J., Husted, Troy, Kallemeyn, Nicolas Ian, Spangler, Ava A, Mccurry, Kyle, Schultze, Courtney, Troisi, Thomas, Thomas, Daniel, Ort, Althea E., Singh, Maya A., Soon, Caitlin, Patton, Catherine, Billman, Jayce A., Jarvis, Sam, Hitt, Travis, Masri, Mirna, Albalushi, Yusef J., Schofer, Matthew J, Linnane, Katherine B., Knott, Philip Whiting, Valencia, Whitney, Arias-Robles, Brian A., Ryder, Diana, Simone, Anna, Abrams, Jonathan M., Belknap, Annelene L., Rouse, Charlotte, Reynolds, Alexander, Petric, Romeo S. L., Gomez, Angel A., Meiselman-Ashen, Jonah B., Carey, Luke, Dias, John S., Fischer-White, Jules, Forbes, Aidan E., Galarraga, Gabriela, Kennedy, Forrest, Lawlor, Rian, Murphy, Maxwell J., Norris, Cooper, Quarderer, Josh, Waller, Caroline, Weber, Robert J., Gunderson, Nicole, Boyne, Tom, Gregory, Joshua A., Propper, Henry Austin, von Peccoz, Charles B. Beck, Branch, Donovan, Clarke, Evelyn, Cutler, Libby, Dabberdt, Frederick M., Das, Swagatam, Figueirinhas, John Alfred D., Fougere, Benjamin L., Roy, Zoe A., Zhao, Noah Y., Cox, Corben L., Barnhart, Logan D. W., Craig, Wilmsen B., Moll, Hayden, Pohle, Kyle, Mueller, Alexander, Smith, Elena K., Spicer, Benjamin C., Aycock, Matthew C., Bat-Ulzii, Batchimeg, Murphy, Madalyn C., Altokhais, Abdullah, Thornally, Noah R., Kleinhaus, Olivia R., Sarfaraz, Darian, Barnes, Grant M., Beard, Sara, Banda, David J, Davis, Emma A. B., Huebsch, Tyler J., Wagoner, Michaela, Griego, Justus, Hale, Jack J. Mc, Porter, Trevor J., Abrashoff, Riley, Phan, Denise M., Smith, Samantha M., Srivastava, Ashish, Schlenker, Jared A. W., Madsen, Kasey O., Hirschmann, Anna E., Rankin, Frederick C, Akbar, Zainab A., Blouin, Ethan, Coleman-Plante, Aislinn, Hintsa, Evan, Lookhoff, Emily, Amer, Hamzi, Deng, Tianyue, Dvorak, Peter, Minimo, Josh, Plummer, William C., Ton, Kelly, Solt, Lincoln, AlAbbas, Batool H., AlAwadhi, Areej A., Cooper, Nicholas M., Corbitt, Jessica S, Dunlap, Christian, Johnson, Owen, Malone, Ryan A., Tellez, Yesica, Wallace, Logan, Ta, Michael-Tan D., Wheeler, Nicola H., Ramirez, Ariana C., Huang, Shancheng, Mehidic, Amar, Christiansen, Katherine E, Desai, Om, Domke, Emerson N., Howell, Noah H., Allsbrook, Martin, Alnaji, Teeb, England, Colin, Siles, Nathan, Burton, Nicholas David, Cruse, Zoe, Gilmartin, Dalton, Kim, Brian T., Hattendorf, Elsie, Buhamad, Maryam, Gayou, Lily, Seglem, Kasper, Alkhezzi, Tameem, Hicks, Imari R., Fife, Ryann, Pelster, Lily M., Fix, Alexander, Sur, Sohan N., Truong, Joshua K., Kubiak, Bartlomiej, Bondar, Matthew, Shi, Kyle Z., Johnston, Julia, Acevedo, Andres B., Lee, Junwon, Solorio, William J., Johnston, Braedon Y., McCormick, Tyler, Olguin, Nicholas, Pastor, Paige J., Wilson, Evan M., Trunko, Benjamin L., Sjoroos, Chris, Adams, Kalvyn N, Bell, Aislyn, Brumage-Heller, Grant, Canales, Braden P., Chiles, Bradyn, Driscoll, Kailer H., Hill, Hallie, Isert, Samuel A., Ketterer, Marilyn, Kim, Matthew M., Mewhirter, William J., Phillips, Lance, Phommatha, Krista, Quinn, Megan S., Reddy, Brooklyn J., Rippel, Matthew, Russell, Bowman, Williams, Sajan, Pixley, Andrew M., Gapin, Keala C., Peterson, B., Ruprecht, Collin, Hardie, Isabelle, Li, Isaac, Erickson, Abbey, Gersabeck, Clint, Gopalani, Mariam, Allanqawi, Nasser, Burton, Taylor, Cahn, Jackson R., Conti, Reese, White, Oliver S., Rojec, Stewart, Hogen, Blake A., Swartz, Jason R., Dick, R., Battist, Lexi, Dunn, Gabrielle M., Gasser, Rachel, Logan, Timothy W., Sinkovic, Madeline, Schaller, Marcus T., Heintz, Danielle A., Enrich, Andrew, Sanchez, Ethan S., Perez, Freddy, Flores, Fernando, Kapla, Shaun D., Shockley, Michael C., Phillips, Justin, Rumley, Madigan, Daboub, Johnston, Karsh, Brennan J., Linders, Bridget, Chen, Sam, Do, Helen C., Avula, Abhinav, French, James M., Bertuccio, Chrisanna, Hand, Tyler, Lee, Adrianna J., Neeland, Brenna K, Salazar, Violeta, Andrew, Carter, Barmore, Abby, Beatty, Thomas, Alonzi, Nicholas, Brown, Ryan, Chandler, Olivia M., Collier, Curran, Current, Hayden, Delasantos, Megan E., Bonilla, Alberto Espinosa de los Monteros, Fowler, Alexandra A., Geneser, Julianne R., Gentry, Eleanor, Gustavsson, E. R., Hansson, Jonathan, Hao, Tony Yunfei, Herrington, Robert N., Kelly, James, Kelly, Teagan, Kennedy, Abigail, Marquez, Mathew J., Meillon, Stella, Palmgren, Madeleine L., Pesce, Anneliese, Ranjan, Anurag, Robertson, Samuel M., Smith, Percy, Smith, Trevor J, Soby, Daniel A., Stratton, Grant L., Thielmann, Quinn N., Toups, Malena C., Veta, Jenna S., Young, Trenton J., Maly, Blake, Manzanares, Xander R., Beijer, Joshua, George, Jacob D., Mills, Dylan P., Ziebold, Josh J, Chambers, Paige, Montoya, Michael, Cheang, Nathan M., Anderson, Hunter J., Duncan, Sheridan J., Ehrlich, Lauren, Hudson, Nathan C., Kiechlin, Jack L., Koch, Will, Lee, Justin, Menassa, Dominic, Oakes, S. H., Petersen, Audrey J., Bunsow, J. R. Ramirez, Bay, Joshua, Ramirez, Sacha, Fenwick, Logan D., Boyle, Aidan P., Hibbard, Lea Pearl, Haubrich, Calder, Sherry, Daniel P., Jenkins, Josh, Furney, Sebastian, Velamala, Anjali A., Krueger, Davis J., Thompson, William N., Chhetri, Jenisha, Lee, Alexis Ying-Shan, Ray, Mia G. V., Recchia, John C., Lengerich, Dylan, Taulman, Kyle, Romero, Andres C., Steward, Ellie N., Russell, Sloan, Hardwick, Dillon F., Wootten, Katelynn, Nguyen, Valerie A., Quispe, Devon, Ragsdale, Cameron, Young, Isabel, Atchley-Rivers, N. S., Stribling, Jordin L., Gentile, Julia G, Boeyink, Taylor A., Kwiatkowski, Daniel, Dupeyron, Tomi Oshima, Crews, Anastasia, Shuttleworth, Mitchell, Dresdner, Danielle C., Flackett, Lydia, Haratsaris, Nicholas, Linger, Morgan I, Misener, Jay H., Patti, Samuel, Pine, Tawanchai P., Marikar, Nasreen, Matessi, Giorgio, Routledge, Allie C., Alkaabi, Suhail, Bartman, Jessica L., Bisacca, Gabrielle E., Busch, Celeste, Edwards, Bree, Staudenmier, Caitlyn, Starling, Travis, McVey, Caden, Montano, Maximus, Contizano, Charles J., Taylor, Eleanor, McIntyre, James K., Victory, Andrew, McCammon, Glen S., Kimlicko, Aspen, Sheldrake, Tucker, Shelchuk, Grace, Von Reich, Ferin J., Hicks, Andrew J., O'neill, Ian, Rossman, Beth, Taylor, Liam C., MacDonald, William, Becker, Simone E., Han, Soonhee, O'Sullivan, Cian, Wilcove, Isaac, Brennan, David J., Hanley, Luke C., Hull, Owen, Wilson, Timothy R., Kalmus, Madison H., Berv, Owen A., Harris, Logan Swous, Doan, Chris H, Londres, Nathan, Parulekar, Anish, Adam, Megan M., Angwin, Abigail, Cabbage, Carter C., Colleran, Zachary, Pietras, Alex, Seux, Octave, Oros, Ryan, Wilkinson, Blake C., Nguyen, Khoa D, Trank-Greene, Maedee, Barone, Kevin M., Snyder, G. L., Biehle, Samuel J, Billig, Brennen, Almquist, Justin Thomas, Dixon, Alyssa M., Erickson, Benjamin, Evans, Nathan, Genne, SL, Kelly, Christopher M, Marcus, Serafima M., Ogle, Caleb, Patel, Akhil, Vendetti, Evan, Courtney, Olivia, Deel, Sean, Del Foco, Leonardo, Gjini, Michael, Haines, Jessica, Hoff, Isabelle J., Jones, M. R., Killian, Dominic, Kuehl, Kirsten, Kuester, Chrisanne, Lantz, Maxwell B., Lee, Christian J, Mauer, Graham, McKemey, Finbar K., Millican, Sarah J., Rosasco, Ryan, Stewart, T. C., VanEtten, Eleanor, Derwin, Zachary, Serio, Lauren, Sickler, Molly G., Blake, Cassidy A., Patel, Neil S., Fox, Margaret, Gray, Michael J, Ziegler, Lucas J., Kumar, Aman Priyadarshi, Polly, Madelyn, Mesgina, Sarah, McMorris, Zane, Griffin, Kyle J., Haile, L. N., Bassel, Claire, Dixon, Thomas J., Beattie, Ryan, Houck, Timothy J, Rodgers, Maeve, Trofino, Tyson R., Lukianow, Dax, Smart, Korben, Hall, Jacqueline L., Bone, Lauren, Baldwin, James O., Doane, Connor, Almohsen, Yousef A., Stamos, Emily, Acha, Iker, Kim, Jake, Samour II, Antonio E., Chavali, S., Kanokthippayakun, Jeerakit, Gotlib, Nicholas, Murphy, Ryan C., Archibald, Jack. W., Brimhall, Alexander J, Boyer, Aidan, Chapman, Logan T., Chadda, Shivank, Sibrell, Lisa, Vallery, Mia M., Conroy, Thomas C., Pan, Luke J., Balajonda, Brian, Fuhrman, Bethany E. S., Alkubaisi, Mohamed, Engelstad, Jacob, Dodrill, Joshua, Fuchs, Calvin R., Bullard-Connor, Gigi, Alhuseini, Isehaq, Zygmunt, James C., Sipowicz, Leo, Hayrynen, Griffin A., McGill, Riley M., Keating, Caden J., Hart, Omer, Cyr, Aidan St., Steinsberger, Christopher H., Thoman, Gerig, Wood, Travis M., Ingram, Julia A., Dominguez, J., Georgiades, Nathaniel James, Johnson, Matthew, Johnson, Sawyer, Pedersen, Alexander J., Ralapanawe, Anoush K, Thomas, Jeffrey J., Sato, Ginn A., Reynolds, Hope, Nasser, Liebe, Mizzi, Alexander Z., Damgaard, Olivia, Baflah, Abdulrahman A., Liu, Steven Y., Salindeho, Adam D., Norden, Kelso, Gearhart, Emily E., Krajnak, Zack, Szeremeta, Philip, Amos, Meggan, Shin, Kyungeun, Muckenthaler, Brandon A., Medialdea, Melissa, Beach, Simone, Wilson, Connor B., Adams, Elena R, Aldhamen, Ahmed, Harris, Coyle M., Hesse, Troy M., Golding, Nathan T., Larter, Zachary, Hernandez, Angel, Morales, Genaro, Traxler, Robert B., Alosaimi, Meshal, Fitton, Aidan F., Aaron, James Holland, Lee, Nathaniel F., Liao, Ryan Z., Chen, Judy, French, Katherine V., Loring, Justin, Colter, Aurora, McConvey, Rowan, Colozzi, Michael, Vann, John D., Scheck, Benjamin T., Weigand, Anthony A, Alhabeeb, Abdulelah, Idoine, Yolande, Woodard, Aiden L., Medellin, Mateo M., Ratajczyk, Nicholas O, Tobin, Darien P., Collins, Jack C., Horning, Thomas M., Pellatz, Nick, Pitten, John, Lordi, Noah, Patterson, Alyx, Hoang, Thi D, Zimmermann, Ingrid H, Wang, Hongda, Steckhahn, Daniel, Aradhya, Arvind J., Oliver, Kristin A., Cai, Yijian, Wang, Chaoran, Yegovtsev, Nikolay, Wu, Mengyu, Ganesan, Koushik, Osborne, Andrew, Wickenden, Evan, Meyer, Josephine C., Chaparro, David, Visal, Aseem, Liu, Haixin, Menon, Thanmay S., Jin, Yan, Wilson, John, Erikson, James W., Luo, Zheng, Shitara, Nanako, Nelson, Emma E, Geerdts, T. R., Ortiz, Jorge L Ramirez, and Lewandowski, H. J.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Flare frequency distributions represent a key approach to addressing one of the largest problems in solar and stellar physics: determining the mechanism that counter-intuitively heats coronae to temperatures that are orders of magnitude hotter than the corresponding photospheres. It is widely accepted that the magnetic field is responsible for the heating, but there are two competing mechanisms that could explain it: nanoflares or Alfv\'en waves. To date, neither can be directly observed. Nanoflares are, by definition, extremely small, but their aggregate energy release could represent a substantial heating mechanism, presuming they are sufficiently abundant. One way to test this presumption is via the flare frequency distribution, which describes how often flares of various energies occur. If the slope of the power law fitting the flare frequency distribution is above a critical threshold, $\alpha=2$ as established in prior literature, then there should be a sufficient abundance of nanoflares to explain coronal heating. We performed $>$600 case studies of solar flares, made possible by an unprecedented number of data analysts via three semesters of an undergraduate physics laboratory course. This allowed us to include two crucial, but nontrivial, analysis methods: pre-flare baseline subtraction and computation of the flare energy, which requires determining flare start and stop times. We aggregated the results of these analyses into a statistical study to determine that $\alpha = 1.63 \pm 0.03$. This is below the critical threshold, suggesting that Alfv\'en waves are an important driver of coronal heating., Comment: 1,002 authors, 14 pages, 4 figures, 3 tables, published by The Astrophysical Journal on 2023-05-09, volume 948, page 71
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- 2023
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73. Intrinsically episodic Antarctic shelf intrusions of circumpolar deep water via canyons
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Ong, Ellie Q. Y., Doddridge, Edward, Constantinou, Navid C., Hogg, Andrew McC., and England, Matthew H.
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Physics - Atmospheric and Oceanic Physics - Abstract
The structure of the Antarctic Slope Current at the continental shelf is crucial in governing the poleward transport of warm water. Canyons on the continental slope may provide a pathway for warm water to cross the slope current and intrude onto the continental shelf underneath ice shelves, which can increase rates of ice shelf melting, leading to reduced buttressing of ice shelves, accelerating glacial flow and hence increased sea level rise. Observations and modelling studies of the Antarctic Slope Current and cross-shelf warm water intrusions are limited, particularly in the East Antarctica region. To explore this topic, an idealised configuration of the Antarctic Slope Current is developed, using an eddy-resolving isopycnal model that emulates the dynamics and topography of the East Antarctic sector. Warm water intrusions via canyons are found to occur in discrete episodes of large onshore flow induced by eddies, even in the absence of any temporal variability in external forcings, demonstrating the intrinsic nature of these intrusions to the slope current system. Canyon width is found to play a key role in modulating cross-shelf exchanges; warm water transport through narrower canyons is more irregular than transport through wider canyons. The intrinsically episodic cross-shelf transport is found to be driven by feedbacks between wind energy input and eddy generation in the Antarctic Slope Current. Improved understanding of the intrinsic variability of warm water intrusions can help guide future observational and modelling studies in the analysis of eddy impacts on Antarctic shelf circulation.
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- 2023
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74. A Sub-Electron-Noise Multi-Channel Cryogenic Skipper-CCD Readout ASIC
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Bessia, Fabricio Alcalde, England, Troy, Sun, Hongzhi, Stefanazzi, Leandro, Braga, Davide, Haro, Miguel Sofo, Li, Shaorui, Estrada, Juan, and Fahim, Farah
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Physics - Applied Physics - Abstract
The \emph{MIDNA} application specific integrated circuit (ASIC) is a skipper-CCD readout chip fabricated in a 65 nm LP-CMOS process that is capable of working at cryogenic temperatures. The chip integrates four front-end channels that process the skipper-CCD signal and performs differential averaging using a dual slope integration (DSI) circuit. Each readout channel contains a pre-amplifier, a DC restorer, and a dual-slope integrator with chopping capability. The integrator chopping is a key system design element in order to mitigate the effect of low-frequency noise produced by the integrator itself, and it is not often required with standard CCDs. Each channel consumes 4.5 mW of power, occupies 0.156 mm${^2}$ area and has an input referred noise of 2.7${\mu\nu}_{rms}$. It is demonstrated experimentally to achieve sub-electron noise when coupled with a skipper-CCD by means of averaging samples of each pixel. Sub-electron noise is shown in three different acquisition approaches. The signal range is 6000 electrons. The readout system achieves 0.2${e^{-}}$ RMS by averaging 1000 samples with MIDNA both at room temperature and at 180 Kelvin.
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- 2023
75. Explainable AI Insights for Symbolic Computation: A case study on selecting the variable ordering for cylindrical algebraic decomposition
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Pickering, Lynn, Almajano, Tereso Del Rio, England, Matthew, and Cohen, Kelly
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Computer Science - Symbolic Computation ,Computer Science - Machine Learning ,68W30, 68T05, 03C10 ,I.2.6 ,I.1.0 - Abstract
In recent years there has been increased use of machine learning (ML) techniques within mathematics, including symbolic computation where it may be applied safely to optimise or select algorithms. This paper explores whether using explainable AI (XAI) techniques on such ML models can offer new insight for symbolic computation, inspiring new implementations within computer algebra systems that do not directly call upon AI tools. We present a case study on the use of ML to select the variable ordering for cylindrical algebraic decomposition. It has already been demonstrated that ML can make the choice well, but here we show how the SHAP tool for explainability can be used to inform new heuristics of a size and complexity similar to those human-designed heuristics currently commonly used in symbolic computation., Comment: 40 pages
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- 2023
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76. A fiber-integrated quantum memory for telecom light
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Bonsma-Fisher, K. A. G., Hnatovsky, C., Grobnic, D., Mihailov, S. J., Bustard, P. J., England, D. G., and Sussman, B. J.
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Quantum Physics ,Physics - Optics - Abstract
We demonstrate the storage and on-demand retrieval of single-photon-level telecom pulses in a fiber cavity. The cavity is formed by fiber Bragg gratings at either end of a single-mode fiber. Photons are mapped into, and out of, the cavity using quantum frequency conversion driven by intense control pulses. In a first, spliced-fiber, cavity we demonstrate storage up to 0.55$\mu$s (11 cavity round trips), with $11.3 \pm 0.1$% total memory efficiency, and a signal-to-noise ratio of $12.8$ after 1 round trip. In a second, monolithic cavity, we increase this lifetime to 1.75$\mu$s (35 round trips) with a memory efficiency of $12.7 \pm 0.2%$ (SNR of $7.0 \pm 0.2$) after 1 round trip. Fiber-based cavities for quantum storage at telecom wavelengths offer a promising route to synchronizing spontaneous photon generation events and building scalable quantum networks., Comment: 8 pages, 7 figures
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- 2023
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77. Computer numerical control knitting of high-resolution mosquito bite blocking textiles
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Bryan Holt, Kyle Oswalt, Alexa England, Richard Murphy, Isabella Owens, Micaela Finney, Natalie Wong, Sushil Adhikari, James McCann, and John Beckmann
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Abstract Mosquitoes and other biting arthropods transmit diseases worldwide, causing over 700,000 deaths each year, and costing about 3 billion USD annually for Aedes species alone. Insect vectored diseases also pose a considerable threat to agricultural animals. While clothing could provide a simple solution to vector-borne diseases, modern textiles do not effectively block mosquito bites. Here we have designed three micro-resolution knitted structures, with five adjustable parameters that can block mosquito bites. These designs, which exhibit significant bite reduction were integrated into a computer numerical control knitting robot for mass production of bite-blocking garments with minimal human labor. We then quantified the comfort of blocking garments. Our knits enable individuals to protect themselves from insects amidst their day-to-day activities without impacting the environment.
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- 2024
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78. Metastatic Pancreatic Adenocarcinoma Downstaged to T0N0 with Chemotherapy and Targeted Therapy, Confirmed by Surgical Pathology: A Case Report
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Bach Ardalan, Alan Livingstone, Dido Franceschi, Danny Sleeman, Jose Azqueta, Rosali Gonzalez, and Jonathan England
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solitary metastasis ,pancreatic adenocarcinoma ,complete response ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: Pancreatic ductal adenocarcinoma (PDAC) is an aggressive human tumor that is typically diagnosed at a later stage when surgery is not possible. Case Presentation: We report the case of a 62-year-old woman who presented to the emergency department with abdominal pain. Computed tomography (CT) revealed a solitary hepatic lesion and a pancreatic body lesion. The pancreatic body lesion was biopsied endoscopically, and a tissue diagnosis was obtained to confirm the diagnosis of PDAC. She was then treated with 12 cycles of FOLFIRINOX with stable disease on CT. Due to the history of a hepatic lesion, she received 11 cycles of gemcitabine/Abraxane and a combination of a MEK inhibitor, Mekinist, and a BRAF inhibitor, BRAFTOVI. Subsequently, the patient underwent a liver biopsy. The biopsy result was negative, and the tumor was deemed resectable. The patient underwent a distal pancreatectomy. Surgical pathology demonstrated a 1.1-cm low-grade papillary mucinous neoplasm with negative margins and lymph nodes, staged T0N0. Adjuvant chemotherapy was not administered. Conclusion: To our knowledge, this is the first report of a patient with metastatic pancreatic adenocarcinoma who received prolonged IV and oral chemotherapy. At the time of the operation, the pathological stage was T0N0. The patient has recently been seen 9 months after surgery with no evidence cancer recurrence. Additionally, ctDNA remains negative.
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- 2024
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79. Whole genome sequencing refines stratification and therapy of patients with clear cell renal cell carcinoma
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Richard Culliford, Samuel E. D. Lawrence, Charlie Mills, Zayd Tippu, Daniel Chubb, Alex J. Cornish, Lisa Browning, Ben Kinnersley, Robert Bentham, Amit Sud, Husayn Pallikonda, The Renal Cancer Genomics England Consortium, Anna Frangou, Andreas J. Gruber, Kevin Litchfield, David Wedge, James Larkin, Samra Turajlic, and Richard S. Houlston
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Science - Abstract
Abstract Clear cell renal cell carcinoma (ccRCC) is the most common form of kidney cancer, but a comprehensive description of its genomic landscape is lacking. We report the whole genome sequencing of 778 ccRCC patients enrolled in the 100,000 Genomes Project, providing for a detailed description of the somatic mutational landscape of ccRCC. We identify candidate driver genes, which as well as emphasising the major role of epigenetic regulation in ccRCC highlight additional biological pathways extending opportunities for therapeutic interventions. Genomic characterisation identified patients with divergent clinical outcome; higher number of structural copy number alterations associated with poorer prognosis, whereas VHL mutations were independently associated with a better prognosis. The observations that higher T-cell infiltration is associated with better overall survival and that genetically predicted immune evasion is not common supports the rationale for immunotherapy. These findings should inform personalised surveillance and treatment strategies for ccRCC patients.
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- 2024
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80. Evaluation of mRNA-LNP and adjuvanted protein SARS-CoV-2 vaccines in a maternal antibody mouse model
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Ross N. England, Elizabeth M. Drapeau, Mohamad-Gabriel Alameh, Reihaneh Hosseinzadeh, Drew Weissman, and Scott E. Hensley
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Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Maternal antibodies (matAbs) protect against a myriad of pathogens early in life; however, these antibodies can also inhibit de novo immune responses against some vaccine platforms. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) matAbs are efficiently transferred during pregnancy and protect infants against subsequent SARS-CoV-2 infections. It is unknown if matAbs inhibit immune responses elicited by different types of SARS-CoV-2 vaccines. Here, we established a mouse model to determine if SARS-CoV-2 spike-specific matAbs inhibit immune responses elicited by recombinant protein and nucleoside-modified mRNA-lipid nanoparticle (mRNA-LNP) vaccines. We found that SARS-CoV-2 mRNA-LNP vaccines elicited robust de novo antibody responses in mouse pups in the presence of matAbs. Recombinant protein vaccines were also able to circumvent the inhibitory effects of matAbs when adjuvants were co-administered. While additional studies need to be completed in humans, our studies raise the possibility that mRNA-LNP-based and adjuvanted protein-based SARS-CoV-2 vaccines have the potential to be effective when delivered very early in life.
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- 2024
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81. Pupal Exuviae of Culex Pipiens L. (Diptera: Culicidae) Can be Utilised as a Non-Invasive Method of Biotype Differentiation
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Laura Jones, Christopher Sanders, Marion England, Mary Cameron, and Simon Carpenter
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Arbovirus ,Pupae ,Biotype ,Molestus ,DNA Extraction ,Direct PCR ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Culex pipiens L. is a principal vector of zoonotic arboviruses in Europe, acting in both an amplification role in enzootic transmission between avian hosts and as a bridge vector between avian hosts and mammals. The species consists of two forms which are indistinguishable using morphological methods but possess varying ecological and physiological traits that influence their vector capacity. In this study we validate methods that can be used to extract trace DNA from single pupal exuviae of Cx. pipiens for use in molecular speciation of samples. These DNA extraction methods are compared using measurement of the total yield and successful identification using a real-time polymerase chain reaction (PCR) assay. Results Genomic DNA was initially extracted from colony-derived individuals using an ethanol precipitation method, two commercially available DNA extraction kits: DNeasy® Blood & Tissue Kit (Qiagen, UK) and Wizard® SV Genomic DNA Purification System (Promega, UK) and a direct real-time PCR method. Time elapsed between eclosion and processing of pupae significantly influenced Cx. pipiens form identification as nucleic acid concentration and PCR amplification success decreased with increased time elapsed. Real-time PCR amplification success, however, was not shown to vary significantly between the three extraction methods, with all methods successfully identifying all samples, but the direct real-time PCR method achieved a lesser amplification success rate of 70% (n = 20 for each treatment). More variable results were produced when field-derived exuviae were used, with no significant difference in real-time PCR amplification success found across the four methods and a lower overall rate of successful identification of 55–80%. Conclusions This study shows that both colony and field derived Cx. pipiens pupal exuviae can be a useful non-invasive source of trace DNA permitting accurate biotype differentiation for at least twenty-four hours post-eclosion. The significance and utility of this technique in ecological and behavioural studies of Cx. pipiens is discussed and recommendations made for use according to experimental scenario.
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- 2024
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82. Stronger Arctic amplification from anthropogenic aerosols than from greenhouse gases
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You-Ting Wu, Yu-Chiao Liang, Michael Previdi, Lorenzo M. Polvani, Mark R. England, Michael Sigmond, and Min-Hui Lo
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Environmental sciences ,GE1-350 ,Meteorology. Climatology ,QC851-999 - Abstract
Abstract Arctic amplification (AA), the greater Arctic surface warming compared to the global average, has been widely attributed to increasing concentrations of greenhouse gases (GHG). However, less is known about the impacts of other forcings - notably, anthropogenic aerosols (AER) - and how they may compare to the impacts of GHG. Here we analyze sets of climate model simulations, specifically designed to isolate the AER and GHG effects on global climate. Surprisingly, we find stronger AA produced by AER than by GHG during the 1955–1984 period, when the strongest global AER increase. This stronger AER-induced AA is due to a greater sensitivity of Arctic sea ice, and associated changes in ocean-to-atmosphere heat exchange, to AER forcing. Our findings highlight the asymmetric Arctic climate response to GHG and AER forcings, and show that clean air policies which have reduced aerosol emissions may have exacerbated the Arctic warming over the past few decades.
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- 2024
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83. Preconceived Impressions Regarding Holmium:YAG Laser Safety in the Urology Operating Theatre
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Barns M, Magee D, and England T
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endourology ,laser surgery ,holmium laser ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Mitchell Barns, Daniel Magee, Thomas England Department of Urology, Sir Charles Gardiner Hospital, Perth, Western Australia, AustraliaCorrespondence: Mitchell Barns, Sir Charles Gardiner Hospital, Department of Urology, Perth, Western Australia, 6009, Australia, Tel +61 409 439 006, Email Mitchell.barns@health.wa.gov.auBackground: Since its introduction over two decades ago, the surgical laser has served in the lithotripsy of urinary calculi, resection of bladder tumours, bladder neck incisions, and prostate enucleation. Concerns regarding the safe use of holmium lasers have resulted in potentially excessive and overly precautious theatre regulations. We aimed to evaluate the preconceived impressions and practice patterns at a single site surrounding laser use in endourology.Methods: We designed a three-part online questionnaire that could be accessed using a smart device or computer. This survey was distributed to all theatre staff involved in laser surgery at our single site, including surgical, nursing, and anaesthetic staff of varying seniority. It asked questions regarding holmium laser safety, provided an up-to-date summary of published literature surrounding the safe use of lasers, and finally gave participants further option to alter the answers to several previously encountered questions.Results: A total of 54 theatre staff completed the survey, including 17 theatre nurses (31.5%), 10 urology consultants (18.5%), 8 urology registrars (14.8%), 7 anaesthetic registrars (13%), 4 anaesthetic consultants (7.4%). About 51.9% of participants believed that current laser safety protocols were adequate, with 38.9% finding them excessive. After reading recently published information on laser safety, 22.2% thought current laser safety measures were adequate (57% decrease) and 77.8% found them to be excessive (100% increase). About 74.1% of participants found that laser safety goggles impair their vision and that 79.6% would choose not to wear them if they were optional.Conclusion: Strict laser safety guidelines reflect an overestimated risk associated with using holmium laser in operating theatres. Laser safety regulations should be re-evaluated to align with current research and potential hazards inherent to the device. In doing so, a more effective distribution of staff could enable greater access to laser surgery, thereby reducing patient morbidity and hospital wait times.Keywords: endourology, laser surgery, holmium laser
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- 2024
84. Time series of freshwater macroinvertebrate abundances and site characteristics of European streams and rivers
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Ellen A. R. Welti, Diana E. Bowler, James S. Sinclair, Florian Altermatt, Mario Álvarez-Cabria, Giuseppe Amatulli, David G. Angeler, Gaït Archambaud, Iñaki Arrate Jorrín, Thomas Aspin, Iker Azpiroz, Nathan Jay Baker, Iñaki Bañares, José Barquín Ortiz, Christian L. Bodin, Luca Bonacina, Núria Bonada, Roberta Bottarin, Miguel Cañedo-Argüelles, Zoltán Csabai, Thibault Datry, Elvira de Eyto, Alain Dohet, Sami Domisch, Gerald Dörflinger, Emma Drohan, Knut A. Eikland, Judy England, Tor E. Eriksen, Vesela Evtimova, Maria J. Feio, Martial Ferréol, Mathieu Floury, Maxence Forcellini, Marie Anne Eurie Forio, Riccardo Fornaroli, Nikolai Friberg, Jean-François Fruget, Jaime R. Garcia Marquez, Galia Georgieva, Peter Goethals, Manuel A. S. Graça, Andy House, Kaisa-Leena Huttunen, Thomas Correll Jensen, Richard K. Johnson, J. Iwan Jones, Jens Kiesel, Aitor Larrañaga, Patrick Leitner, Lionel L’Hoste, Marie-Hélène Lizée, Armin W. Lorenz, Anthony Maire, Jesús Alberto Manzanos Arnaiz, Brendan Mckie, Andrés Millán, Timo Muotka, John F. Murphy, Davis Ozolins, Riku Paavola, Petr Paril, Francisco Jesús Peñas Silva, Marek Polasek, Jes Rasmussen, Manu Rubio, David Sánchez Fernández, Leonard Sandin, Ralf B. Schäfer, Astrid Schmidt-Kloiber, Alberto Scotti, Longzhu Q. Shen, Agnija Skuja, Stefan Stoll, Michal Straka, Rachel Stubbington, Henn Timm, Violeta G. Tyufekchieva, Iakovos Tziortzis, Yordan Uzunov, Gea H. van der Lee, Rudy Vannevel, Emilia Varadinova, Gábor Várbíró, Gaute Velle, Piet F. M. Verdonschot, Ralf C. M. Verdonschot, Yanka Vidinova, Peter Wiberg-Larsen, and Peter Haase
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Science - Abstract
Abstract Freshwater macroinvertebrates are a diverse group and play key ecological roles, including accelerating nutrient cycling, filtering water, controlling primary producers, and providing food for predators. Their differences in tolerances and short generation times manifest in rapid community responses to change. Macroinvertebrate community composition is an indicator of water quality. In Europe, efforts to improve water quality following environmental legislation, primarily starting in the 1980s, may have driven a recovery of macroinvertebrate communities. Towards understanding temporal and spatial variation of these organisms, we compiled the TREAM dataset (Time seRies of European freshwAter Macroinvertebrates), consisting of macroinvertebrate community time series from 1,816 river and stream sites (mean length of 19.2 years and 14.9 sampling years) of 22 European countries sampled between 1968 and 2020. In total, the data include >93 million sampled individuals of 2,648 taxa from 959 genera and 212 families. These data can be used to test questions ranging from identifying drivers of the population dynamics of specific taxa to assessing the success of legislative and management restoration efforts.
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- 2024
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85. Multi-objective Bayesian active learning for MeV-ultrafast electron diffraction
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Fuhao Ji, Auralee Edelen, Ryan Roussel, Xiaozhe Shen, Sara Miskovich, Stephen Weathersby, Duan Luo, Mianzhen Mo, Patrick Kramer, Christopher Mayes, Mohamed A. K. Othman, Emilio Nanni, Xijie Wang, Alexander Reid, Michael Minitti, and Robert Joel England
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Science - Abstract
Abstract Ultrafast electron diffraction using MeV energy beams(MeV-UED) has enabled unprecedented scientific opportunities in the study of ultrafast structural dynamics in a variety of gas, liquid and solid state systems. Broad scientific applications usually pose different requirements for electron probe properties. Due to the complex, nonlinear and correlated nature of accelerator systems, electron beam property optimization is a time-taking process and often relies on extensive hand-tuning by experienced human operators. Algorithm based efficient online tuning strategies are highly desired. Here, we demonstrate multi-objective Bayesian active learning for speeding up online beam tuning at the SLAC MeV-UED facility. The multi-objective Bayesian optimization algorithm was used for efficiently searching the parameter space and mapping out the Pareto Fronts which give the trade-offs between key beam properties. Such scheme enables an unprecedented overview of the global behavior of the experimental system and takes a significantly smaller number of measurements compared with traditional methods such as a grid scan. This methodology can be applied in other experimental scenarios that require simultaneously optimizing multiple objectives by explorations in high dimensional, nonlinear and correlated systems.
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- 2024
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86. Using Standardised International Oral Health-Related Datasets in 6 Countries
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Tom Broomhead, Rachael England, Stephen Mason, Michael Sereny, Sean Taylor, Georgios Tsakos, David Williams, and Sarah R. Baker
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Global health ,Oral health ,Dental health surveys ,Social determinants of health ,Dental caries ,Periodontal disease ,Dentistry ,RK1-715 - Abstract
ABSTRACT: Introduction: Oral diseases affect a significant proportion of the world's population, yet international comparisons involving oral health outcomes have often been limited due to differences in the way country-level primary data are collected. In response to this, the World Dental Federation (FDI) Oral Health Observatory project was launched with the goal of collecting and producing standardised international data on oral health across countries. The aim of this descriptive cross-sectional study was to examine associations between self-reported general health and a range of factors (sociodemographics, oral health–related behaviours, oral impacts, clinical variables) using these standardised international datasets. Methods: Dentists within FDI member National Dental Associations who chose to take part in the project were selected using a multistage sampling method. The number of dentists in each cluster was set according to the proportion of the national population living in the area, and 50 patients per dentist were systematically approached to take part. Patients and dentists completed 2 separate questionnaires on a mobile app. Ordinal logistic regression (conducted in December 2022) was used to analyse the linked patient and dentist data from 6 countries: China (n = 2242); Colombia (n = 1029); India (n = 999); Italy (n = 711); Japan (n = 1271); and Lebanon (n = 798). Self-reported general health was the dependent variable, with age, sex, education, self-reported oral health–related behaviours, self-reported oral impacts, and clinical variables acting as the independent variables. Results: The results demonstrated a different pattern of associations in the different countries. Better self-reported general health was associated with degree-level education in all 6 countries and with reporting no oral impact and no sensitive teeth in 4 countries. Several country-specific patterns were also found, including the importance of tooth brushing in Colombia, periodontal health in Italy, and differing associations with sugary drinks consumption in India and Japan. Conclusions: These descriptive findings provide a basis for further research and, importantly, for advocacy in identifying patient oral health care needs according to both person-reported and clinical aspects. This can facilitate optimisation of service provision and potentially influence policy and investments.
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- 2024
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87. Correction to: Molecular Dynamics Modeling of Thermal Conductivity of Several Hydrocarbon Base Oils
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Ahmed, Jannat, Wang, Q. Jane, Balogun, Oluwaseyi, Ren, Ning, England, Roger, and Lockwood, Frances
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- 2024
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88. Part of the gender gap in voting for Democrats arises because a higher proportion of women than men voters are Black
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England, Paula, Hout, Michael, Vilbig, Karyn, and Wells, Kevin
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Gender Equality ,Female ,Humans ,Male ,Income ,Sex Factors ,Black or African American ,Politics ,elections ,gender gap ,marriage ,racial inequality ,voting - Abstract
Women voted for the Democratic candidate more than men did in each US presidential election since 1980. We show that part of the gender gap stems from the fact that a higher proportion of women than men voters are Black, and Black voters overwhelmingly choose Democratic candidates. Past research shows that Black men have especially high rates of death, incarceration, and disenfranchisement due to criminal convictions. These disparities reduce the share of men voters who are Black. We show that the gender difference in racial composition explains 24% of the gender gap in voting Democratic. The gender gap in voting Democratic is especially large among those who are never-married, and, among them, the differing racial composition of men and women voters is more impactful than in the population at large, explaining 43% of the gender gap. We consider an alternative hypothesis that income differences between single men and women explain the gender gap in voting, but our analysis leads us to reject it. Although unmarried women are poorer than unmarried men, and lower-income voters vote slightly more Democratic, the latter difference is too small for income to explain much of the gender gap in voting. In short, the large gender gap among unmarried voters is not a reflection of the lower incomes of women's households but does reflect the fact that women voters are disproportionately Black. We used the General Social Survey as the data source for the analysis, then replicated results with the American National Election Survey data.
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- 2023
89. Integrated STEM Education: A Content Analysis of Three STEM Education Research Journals
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Wilson, Carey, Campbell-Gulley, Britney, Anthony, Holly Garret, Pérez, Miguel, and England, Meghan P.
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In this content analysis, the authors examined articles from three international STEM journals to highlight and indicate if there were any trends for iSTEM research from 2013 to 2018. Of the 296 articles analyzed in this content analysis, 41 investigated the integration of STEM disciplines. Findings revealed that integrated STEM (iSTEM) education research is often qualitative and occurs in the United States. This study also indicates an upward trend in the percentage of iSTEM education research from 2013 to 2018, and many of the articles focused on middle school students. A closer examination of the introductions, backgrounds, and literature reviews of the 41 articles revealed four explicit definitions for iSTEM education. Furthermore, STEM and Education were the most frequently used author keywords and ERIC descriptors.
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- 2022
90. Focusing on Epistemological Beliefs in an ELT Train-the-Trainer Program
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England, Neil
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Epistemological beliefs -- such as beliefs about the value attached to different forms of language teacher knowledge -- play a key role in knowledge interpretation and reconstruction in language teacher education. This article first presents a case for an explicit focus on epistemological beliefs in an ELT train-the-trainer program for state sector primary and secondary teachers of English in the developing world who currently conduct, or will go on to conduct, in-service teacher education in their local context. The main part of the article provides suggestions for how this could be done, at the beginning, in the middle, and at the end of the program.
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- 2022
91. Measuring ultrafast time-bin qudits
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Bouchard, Frédéric, Bonsma-Fisher, Kent, Heshami, Khabat, Bustard, Philip J., England, Duncan, and Sussman, Benjamin
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Quantum Physics ,Physics - Optics - Abstract
Time-bin qudits have emerged as a promising encoding platform in many quantum photonic applications. However, the requirement for efficient single-shot measurement of time-bin qudits instead of reconstructive detection has restricted their widespread use in experiments. Here, we propose an efficient method to measure arbitrary superposition states of time-bin qudits and confirm it up to dimension 4. This method is based on encoding time bins at the picosecond time scale, also known as ultrafast time bins. By doing so, we enable the use of robust and phase-stable single spatial mode temporal interferometers to measure time-bin qudit in different measurement bases., Comment: 9 pages, 8 figures
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- 2023
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92. Intensity interferometry for holography with quantum and classical light
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Thekkadath, G. S., England, D., Bouchard, F., Zhang, Y., Kim, M. S., and Sussman, B.
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Quantum Physics ,Physics - Optics - Abstract
As first demonstrated by Hanbury Brown and Twiss, it is possible to observe interference between independent light sources by measuring correlations in their intensities rather than their amplitudes. In this work, we apply this concept of intensity interferometry to holography. We combine a signal beam with a reference and measure their intensity cross-correlations using a time-tagging single-photon camera. These correlations reveal an interference pattern from which we reconstruct the signal wavefront in both intensity and phase. We demonstrate the principle with classical and quantum light, including a single photon. Since the signal and reference do not need to be phase-stable, this technique can be used to generate holograms of self-luminous or remote objects using a local reference, thus opening the door to new holography applications., Comment: 10 pages, 9 figures; includes Supplemental Material
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- 2023
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93. Granite Guide to Early Childhood: Introduction to New Hampshire's Child Care Sector. Overview
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University of New Hampshire, Carsey School of Public Policy, Evan England, and Jess Carson
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The early care and education (ECE) sector in New Hampshire (NH) is a complex ecosystem that must account for families' needs and resources, the capacity and availability of the workforce, and the costs of providing services. This ecosystem is also bolstered (and constrained) by local, state, and federal policy. This series of primers, titled the "Granite Guide to Early Childhood," synthesizes the widely disaggregated scholarship on child care in New Hampshire and compiles this work into an unprecedented accessible collection. These primers aim to provide a vital understanding of key factors involved in developing a high-quality, affordable, and equitable ECE system.
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- 2024
94. Quantum correlation light-field microscope with extreme depth of field
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Zhang, Yingwen, England, Duncan, Orth, Antony, Karimi, Ebrahim, and Sussman, Benjamin
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Quantum Physics ,Physics - Optics - Abstract
Light-field microscopy (LFM) is a 3D microscopy technique whereby volumetric information of a sample is gained by simultaneously capturing both the position and momentum (angular) information of light illuminating a scene. Conventional LFM designs generally require a trade-off between position and momentum resolution, requiring one to sacrifice resolving power for increased depth of field (DOF) or vice versa. In this work, we demonstrate a LFM design that does not require this trade-off by utilizing the inherent correlations between spatial-temporal entangled photon pairs. Here, one photon from the pair is used to illuminate a sample from which the position information of the photon is captured directly by a camera. By virtue of the strong momentum anti-correlation between the two photons, the momentum information of the illumination photon can then be inferred by measuring the angle of its entangled partner on a different camera. By using a combination of ray-tracing and a Gerchberg-Saxton type algorithm for the light field reconstruction, we demonstrate that a resolving power of 5 $\mu$m can be maintained with a DOF of $\sim500$ $\mu$m, approximately 3 times of the latest LFM designs or $>100$ time that of a conventional microscope. In the extreme, at a resolving power of 100 $\mu$m, it is possible to achieve near infinite DOF., Comment: 16 pages, 9 figures
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- 2022
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95. Reconfigurable phase contrast microscopy with correlated photon pairs
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Hodgson, Hazel, Zhang, Yingwen, England, Duncan, and Sussman, Benjamin
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Quantum Physics ,Physics - Optics - Abstract
A phase-sensitive microscopy technique is proposed and demonstrated that employs the momentum correlations inherent in spontaneous parametric down-conversion. One photon from a correlated pair is focused onto a microscopic target while the other is measured in the Fourier plane. This provides knowledge of the position and angle of illumination for every photon striking the target, allowing full post-production control of the illumination angle used to form an image. The versatility of this approach is showcased with asymmetric illumination and differential phase contrast imaging, without any beam blocks or moving parts., Comment: 5 pages, 3 figures
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- 2022
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96. Levelwise construction of a single cylindrical algebraic cell
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Nalbach, Jasper, Ábrahám, Erika, Specht, Philippe, Brown, Christopher W., Davenport, James H., and England, Matthew
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Computer Science - Symbolic Computation - Abstract
Satisfiability Modulo Theories (SMT) solvers check the satisfiability of quantifier-free first-order logic formulas. We consider the theory of non-linear real arithmetic where the formulae are logical combinations of polynomial constraints. Here a commonly used tool is the Cylindrical Algebraic Decomposition (CAD) to decompose real space into cells where the constraints are truth-invariant through the use of projection polynomials. An improved approach is to repackage the CAD theory into a search-based algorithm: one that guesses sample points to satisfy the formula, and generalizes guesses that conflict constraints to cylindrical cells around samples which are avoided in the continuing search. Such an approach can lead to a satisfying assignment more quickly, or conclude unsatisfiability with fewer cells. A notable example of this approach is Jovanovi\'c and de Moura's NLSAT algorithm. Since these cells are produced locally to a sample we might need fewer projection polynomials than the traditional CAD projection. The original NLSAT algorithm reduced the set a little; while Brown's single cell construction reduced it much further still. However, the shape and size of the cell produced depends on the order in which the polynomials are considered. This paper proposes a method to construct such cells levelwise, i.e. built level-by-level according to a variable ordering. We still use a reduced number of projection polynomials, but can now consider a variety of different reductions and use heuristics to select the projection polynomials in order to optimise the shape of the cell under construction. We formulate all the necessary theory as a proof system: while not a common presentation for work in this field, it allows an elegant decoupling of heuristics from the algorithm and its proof of correctness.
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- 2022
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97. Enhancement of reactive oxygen species production by ultra-short electron pulses
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J. Tye, O. Solgaard, R. J. England, J. V. Trapp, A. Fielding, and C. P. Brown
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dielectric laser accelerator ,electron-tissue interaction ,electron radiotherapy ,reactive oxygen species ,pulse duration ,Science - Abstract
The development of laser-driven accelerators-on-chip has provided an opportunity to miniaturize devices for electron radiotherapy delivery. Laser-driven accelerators produce highly time-compressed electron pulses, on the 100 fs to 1 ps scale. This delivers electrons at high peak power yet low average beam current compared with conventional delivery devices, which generate pulses of approximately 3 µs. The biophysical effects of this time structure, however, are unclear. Here, we use a Monte Carlo simulation approach to explore the effects of the electron beam time structure on the production of reactive oxygen species (ROS) in water. Our results show a power law increase in the generation of hydroxyl ions per deposited electron with decreasing pulse length over the pulse length range of 10 µs to 100 fs. Similar trends were observed for hydrogen peroxide, superoxide, hydroperoxyl, hydronium and solvated electrons. In practical terms, this indicates a fourfold increase in the efficiency of free radical production for sub-picosecond pulses, relative to that of conventional microsecond pulses, for the same number of deposited electrons.
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- 2024
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98. Dynamic changes in insulin-like growth factor binding protein expression occur between embryonic and early post-hatch development in broiler chickens
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Lauren A. Vaccaro, Kyle Herring, Abigail Wilson, Emma England, Addison L. Smith, and Laura E. Ellestad
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broiler ,liver ,breast muscle ,insulin-like growth factor ,insulin-like growth factor binding protein ,Animal culture ,SF1-1100 - Abstract
ABSTRACT: Somatotropic gene expression has been altered by genetic selection, and developmental changes in insulin-like growth factor (IGF) and IGF binding protein (IGFBP) expression may contribute to rapid growth and muscle accretion in commercial broilers. The objective of this study was to evaluate changes in somatotropic axis activity between embryonic day (e) 12 and post-hatch day (d) 21. Liver and breast muscle (pectoralis major) were collected to measure gene expression, and blood was collected post-hatch to measure circulating IGFs. Liver IGF1 rose rapidly post-hatch and, in muscle, IGF1 exhibited a dynamic expression pattern. Levels decreased from e14 to e20, returned to e14 levels at d3, decreased again at d10, and stayed low thereafter. In both tissues, mRNA levels of several IGFBPs changed between embryogenesis and post-hatch. Liver IGFBP2 increased between e12 and e20, returned to e12 levels on d1, and remained low. Conversely, liver IGFBP4 expression was greater post-hatch than during embryogenesis. Expression of select IGFBPs was depressed in liver during the peri-hatch period. Liver IGFBP1, IGFBP3, IGFBP5, and IGFBP7 mRNA levels all decreased around this time and returned to embryonic levels by d3. In breast muscle, expression of both IGFBP2 and IGFBP4 was reduced after hatch. Circulating insulin-like growth factor IGF1 and IGF2 levels did not change between hatch and d21. These data suggest that post-hatch IGF effects are likely modulated by target tissue IGFR1 and IGFBP expression rather than changes in circulating hormone levels, with promotion or restriction of IGF-receptor binding regulating growth. Downregulation of several IGFBPs synthesized in the liver may facilitate the metabolic transition from utilizing yolk lipids to dietary carbohydrates. Several IGFBPs produced in breast muscle appear to have growth-promotive effects during embryogenesis but restrict growth of this tissue after hatch, as their post-hatch downregulation could facilitate local IGF signaling. These developmental gene expression patterns suggest that somatotropic hormonal signaling regulating growth and muscle accretion might be controlled through differential actions of IGFBPs and provide a basis for future functional studies.
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- 2024
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99. Impact of frailty in older people on health care demand: simulation modelling of population dynamics to inform service planning
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Bronagh Walsh, Carole Fogg, Tracey England, Sally Brailsford, Paul Roderick, Scott Harris, Simon Fraser, Andrew Clegg, Simon de Lusignan, Shihua Zhu, Francesca Lambert, Abigail Barkham, Harnish Patel, and Vivienne Windle
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frailty ,incidence ,prevalence ,transitions ,ageing population ,older people ,health ,cohort study ,computer simulation modelling ,system dynamics ,service use ,service costs ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 - Abstract
Background As populations age, frailty and the associated demand for health care increase. Evidence needed to inform planning and commissioning of services for older people living with frailty is scarce. Accurate information on incidence and prevalence of different levels of frailty and the consequences for health outcomes, service use and costs at population level is needed. Objectives To explore the incidence, prevalence, progression and impact of frailty within an ageing general practice population and model the dynamics of frailty-related healthcare demand, outcomes and costs, to inform the development of guidelines and tools to facilitate commissioning and service development. Study design and methods A retrospective observational study with statistical modelling to inform simulation (system dynamics) modelling using routine data from primary and secondary health care in England and Wales. Modelling was informed by stakeholder engagement events conducted in Hampshire, England. Data sources included the Royal College of General Practitioners Research and Surveillance Centre databank, and the Secure Anonymised Information Linkage Databank. Population prevalence, incidence and progression of frailty within an ageing cohort were estimated using the electronic Frailty Index tool, and associated service use and costs were calculated. Association of frailty with outcomes, service use and costs was explored with multistate and generalised linear models. Results informed development of a prototype system dynamics simulation model, exploring population impact of frailty and future scenarios over a 10-year time frame. Simulation model population projections were externally validated against retrospective data from Secure Anonymised Information Linkage. Study population The Royal College of General Practitioners Research and Surveillance Centre sample comprised an open cohort of the primary care population aged 50 + between 2006 and 2017 (approx. 2.1 million people). Data were linked to Hospital Episode Statistics data and Office for National Statistics death data. A comparable validation data set from Secure Anonymised Information Linkage was generated. Baseline measures Electronic Frailty Index score calculated annually and stratified into Fit, Mild, Moderate and Severe frailty categories. Other variables included age, sex, Index of Multiple Deprivation score, ethnicity and Urban/rural. Outcomes Frailty transitions, mortality, hospitalisations, emergency department attendances, general practitioner visits and costs. Findings Frailty is already present in people aged 50–64. Frailty incidence was 47 cases per 1000 person-years. Frailty prevalence increased from 26.5% (2006) to 38.9% (2017). Older age, higher deprivation, female sex, Asian ethnicity and urban location independently predict frailty onset and progression; 4.8% of ‘fit’ people aged 50–64 years experienced a transition to a higher frailty state in a year, compared to 21.4% aged 75–84. Individual healthcare use rises with frailty severity, but Mild and Moderate frailty groups have higher overall costs due to larger population numbers. Simulation projections indicate frailty will increase by 7.1%, from 41.5% to 48.7% between 2017 and 2027, and associated costs will rise by £5.8 billion (in England) over an 11-year period. Conclusions Simulation modelling indicates that frailty prevalence and associated service use and costs will continue to rise in the future. Scenario analysis indicates reduction of incidence and slowing of progression, particularly before the age of 65, has potential to substantially reduce future service use and costs, but reducing unplanned admissions in frail older people has a more modest impact. Study outputs will be collated into a commissioning toolkit, comprising guidance on drivers of frailty-related demand and simulation model outputs. Study registration This study is registered as NCT04139278 www.clinicaltrials.gov. Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health and Social Care Delivery Research programme (NIHR award ref: 16/116/43) and is published in full in Health and Social Care Delivery Research; Vol. 12, No. 44. See the NIHR Funding and Awards website for further award information. Plain language summary Why was this research needed? More people are living longer with long-term medical conditions or disabilities. They are more likely to be admitted to hospital and need health care. People with these vulnerabilities are living with ‘frailty’, which can be mild, moderate or severe. Our research is aimed to produce information on how common frailty is, how it changes over time, what can influence it getting worse, and how it will impact our future population. What did we do? We analysed two large data sets from England and Wales (2006–17) to find out the numbers of people aged 50 + living with frailty, their characteristics (e.g. age, sex, living in deprived areas) and how these influenced frailty occurring and worsening. We explored how often they used general practitioner/hospital services and how much that cost. This information was used in a computer model to predict what would happen in the future. What did we find? The proportion of people with frailty increased from 26.5% in 2006 to 38.9% in 2017, including large increases in people with mild and moderate frailty. Older age, female sex, Asian ethnicity, and living in more deprived or urban areas, all increased the risk of someone becoming frail, and of their frailty worsening. The large numbers of people with mild and moderate frailty led to the highest costs overall. The computer model predicted that the proportion of people with frailty will increase by another 7.1% between 2017 (41.5%) and 2027 (48.7%), and associated costs will rise by £5.8 billion over an 11-year period. What does this mean? We have estimated how the number of people with frailty and their use of services will continue to rise in the future. Taking action to reduce people’s risk of becoming frail, particularly before age 65, and slowing frailty progression can reduce the need for services. We will report this information to people who plan health care so they can provide more effective care for people with frailty. Scientific summary Background As the population ages, prevalence of frailty and associated demand for health care in both primary and secondary care settings will rise. Identification and clinical management of frailty are a priority, but capacity and resources for delivery remain limited. There is an evidence gap in relation to the planning, commissioning and delivery of services for older people living with frailty and questions remain about the incidence and prevalence of different levels of frailty and the consequences for health outcomes, service use and costs. Objectives The overarching aim of this study was to explore the incidence, prevalence, progression and impact of frailty within the ageing population. The specific study objectives were to: identify incidence and prevalence of frailty states in an ageing population; identify frailty trajectories and transitions in severity in the older population over time; explore drivers of progression of frailty, including clinical, socio-economic and demographic factors; examine the impact of frailty on service use, costs and pathways of care; explore the relationship between frailty status, socioeconomic factors, practice factors and service use and outcomes (mortality, unplanned admissions, residential care use); and predict trends in frailty, modelling of health and care demand and costs over time and in different service contexts. The final aim of these analyses was to inform the development of guidelines and tools to facilitate commissioning and service development, thus providing an evidence-based approach to planning primary and secondary care services for patients aged 50 and over with different levels of frailty. Study design and methods This study used a retrospective observational study design with statistical modelling to inform simulation (system dynamics) modelling using routine healthcare data from primary and secondary care. Retrospective data were used to determine population prevalence, incidence and progression of frailty within an ageing cohort using the electronic Frailty Index (eFI) tool and data from the English Royal College of General Practitioners Research and Surveillance Centre (RCGP RSC) databank, with additional data from the Welsh Secure Anonymised Information Linkage (SAIL) Databank. Associated service use and costs were determined from linked routine data. Statistical analysis of the RCGP RSC data involved both descriptive summaries as well as multistate modelling to identify key socioeconomic variables (e.g. age, gender, deprivation, ethnicity) that are independently associated with frailty. A cost analysis of both primary and secondary care data was also conducted using generalised linear models to identify factors associated with costs and provide estimates of adjusted mean costs, by frailty and age categories. Five stakeholder engagement group (SEG) sessions were held at appropriate times throughout the study period to seek input from a broad range of health and care professionals and commissioners, members of the general public, patients and carers. These sessions focused on different aspects of the research as the project evolved, starting with the type of services available for people living with frailty and who would use them, to gaining feedback on ongoing analyses and ways of presenting the results, to informing and appraising the developing simulation model and suggesting scenarios that could be applied. Information from the statistical modelling as well as that gathered during patient and professional stakeholder events was used to inform the development of a system dynamics simulation model which could be used to examine the incidence, and progression of frailty in the 50 and over population. An initial model was developed and validated with the RCGP RSC data before further external validation against a comparable large data set from SAIL. The simulation was further adapted to use Office for National Statistics (ONS) population estimates for England, thus allowing exploration of future population trends in frailty prevalence and health service impact over a 10-year period following 2017. As one of the benefits of simulation modelling is to consider ‘what-if’ scenarios, the baseline simulation model was used to explore future trends in frailty prevalence and the associated primary and secondary care demand if present trends continue. Further ‘what-if’ scenarios exploring the impact of reduced frailty incidence, slowed frailty progression and reduced unplanned hospitalisation were carried out. Study population The primary data source for the study was the RCGP RSC, providing primary care data from England. The sample comprised an open cohort of the primary care population aged 50 and over (approx. 1.1 million people) during the year 2006, rising to 1,491,954 in 2017, with a total of 2.1 million people included overall and 15.5 million person-years of data. The data were linked to Hospital Episode Statistics (HES) secondary care data and ONS death registry data. A comparable data set from Wales, provided by SAIL, was used for external validation of the simulation model and included approximately 1.3 million people and 11 million person-years of data. Baseline measures The eFI score was calculated for all adults aged 50 +, with scores recalculated at 12-month intervals for the study period. The population was stratified into Fit, Mild, Moderate and Severe frailty groups according to their eFI score [Fit: (0–0.12); Mild: (0.13–0.24); Moderate: (0.25–0.36); Severe: (> 0.36)]. Other variables included age, sex, Index of Multiple Deprivation (IMD) score, ethnicity, long-term condition diagnoses, urban/rural indicators, practice size. Outcomes Frailty transitions, mortality, primary care [general practice surgery and home visits, telephone and electronic consultations, and individual medicines], secondary care [ambulance calls, emergency department (ED) attendances, critical care admissions, hospitalisations (unplanned and elective) and outpatient appointments] and care home residence. Costs were estimated for primary and secondary care and total care service use for the different frailty categories over 12 years. The influence of frailty on outcomes, service use and costs was explored using the RCGP RSC databank and via multistate and generalised linear models. These analyses along with information gathered during stakeholder events were used to inform the development of a prototype system dynamics simulation model (implemented in AnyLogic software) to explore the development and impact of frailty in the population and likely future scenarios over a 10-year time frame. The simulation model population projections were externally validated against retrospective data from the SAIL data set. The prototype simulation model was further adapted to use ONS population estimates for England, thus enabling population level projections of frailty in those aged 50 and over for a 10-year period following 2017. Baseline (‘no service changes’) projections of both the prevalence of frailty in the population and the associated primary, secondary and residential care use were examined over the period 2017–27. ‘What-if’ scenarios exploring the impact of reduced frailty incidence, slowed frailty progression and reduced unplanned hospitalisations were carried out. Findings Frailty is already present in those aged 50–64, with approximately 10% of this age group having mild, moderate or severe frailty at baseline. The overall incidence of frailty in people aged 50 + was 47 cases per 1000 person-years at risk (PYAR). Mortality increased with age and frailty severity. The overall prevalence of frailty increased from 26.5% to 38.9% over the 12-year study period, with the greatest change in prevalence in the mild and moderate frailty categories. At least one transition between frailty categories was observed in 32.7% (n = 709,377) of the cohort over a median follow-up of 7 years. The average age of transition from fit to mild was 69 years, fit/mild to moderate was 77 years and any category to severe was 81 years. In order of impact, older age, higher deprivation, female sex, Asian ethnicity and urban location are independent predictors of frailty onset and progression. For example, 4.8% of people aged 50–64 in the Fit category will experience a transition to a higher frailty state in a 12-month period, as compared to 21.4% in people aged 75–84. Trends in primary and secondary care service use were observed within frailty categories and age groups. Mean face-to-face appointments were generally similar within frailty categories across age groups, but with a notable decrease in appointments with older age in the severe category. Prescriptions increased with increasing age in both Fit and Mild frailty categories but decreased in moderate and severe categories. When stratified by age, mean annual outpatient appointments, ED attendances and hospital admissions (both elective and unplanned) were similar across age groups within the Fit and Mild categories, and decreased with increasing age in the moderate and severe categories. Individual annual total use of primary and secondary care services rise with frailty severity, but overall costs for people living with frailty are highest in the mild and moderate frailty groups due to their larger population numbers. An approximate doubling in costs was observed between fit and mild frailty categories, a trebling for moderate frailty, and quadrupling for severe frailty. Stakeholder engagement established that in addition to core primary and secondary care services, future work will need to consider additional community health care and social care services to provide a more complete overview of total care use and costs, while acknowledging that data on these services is more difficult to obtain. A focus on having the right services at the right time, for example preventative and well-being services for middle-aged adults to reduce onset of frailty, and supportive services for older adults to slow frailty progression and enable continued independence and hospital avoidance were discussed. The role of health inequalities and deprivation as demonstrated by the analyses was considered key to diversify service planning according to local needs. Simulation modelling has provided a useful means of capturing both the statistical modelling and cost analysis elements of the study along with the suggestions from both the patient and professional members involved in the stakeholder events. The development of the model with 16 connected subgroups and connected flows in and out of the groups has been an iterative approach and has benefited from the information contained in the two large data sets (RCGO RSC and SAIL) as well as ONS population estimates and projections. The system dynamics (SD) model has been extensively validated against summary descriptive data from the RCGP RSC cohort (with a 6.9% error) and externally against a similar data set from SAIL (9.3% error) before being scaled up (using ONS estimates for the number of people entering the 50 + population and those turning 65, 75 or 85 in a given year) to consider how frailty incidence and prevalence at a national population level could be represented over the period of the cohort study (2006–17) and 10 years into the future. The prototype simulation model is therefore able to consider the estimated frailty dynamics for England as well as the associated service use and costs in both baseline and ‘what-if’ scenarios. A baseline (no service changes) scenario experiment suggests what might happen if there is no change to current service provision and interventions caring for the population aged 50 and over (which is projected to increase from 20,045,766 to 21,755,097 between 2017 and 2027). Preliminary results suggest a projected increase in primary care service use and medication use with the cost for providing GP services and individual medicines in England rising by £3.1 billion for people with frailty. For secondary care, the rise in costs is estimated to be £2.7 billion for patients with frailty. The simulation predicted that the proportion of people with frailty will increase by another 7.1% between 2017 (41.5%) and 2027 (48.7%), and associated costs will rise by £5.8 billion over an 11-year period. A scenario experiment exploring reducing frailty incidence by 5% indicates that almost 180,000 people remain fit each year rather than becoming frail (121,000 fewer mildly frail people, 27,500 fewer moderately frail and 12,800 fewer severely frail), which in turn could result in almost 300,000 fewer GP consultations (in the first year of the intervention) among the mildly frail and 14,000 fewer would be needed by those with moderate and severe frailty. In relation to secondary care services, there would be 114,000 fewer events among those that are mildly frail and an extra 57,000 among those that are fit. This would result in 5.3 million fewer secondary care service events in those with some degree of frailty over the projected 10-year period. Reducing frailty incidence could result in 26,418 fewer unplanned admissions and 47,506 fewer elective admissions. The cost savings from all these service use changes could amount to £266 million per annum by 2027. A scenario experiment exploring a reduction in frailty progression indicates that almost 222,000 people remain mildly frail each year rather than becoming moderately or severely frail (68,200 fewer moderately frail and 110,000 fewer severely frail). The corresponding impact on primary care service use is projected to be 623,700 fewer GP consultations (face-to-face, telephone, home visits and e-consultations) per annum in 2027. In relation to secondary care services there could be 64,111 fewer Accident and Emergency (A&E) attendances, 1540 fewer admissions to critical care and 350,762 fewer outpatient appointments as well as 53,162 fewer unplanned admissions and 54,283 fewer elective admissions. The cost savings from all these service use changes could amount to £298.9 million per annum by 2027. A scenario experiment considering reducing the number of unplanned hospital admissions among patients with frailty by 5% indicates 89,000 fewer hospital admissions. The cost saving from this service use change could amount to £153.8 million per annum by 2027. Findings will be used to inform guidelines and recommendations for service providers and commissioners. Conclusions This study provides new and robust evidence on incidence, prevalence and progression of frailty in an ageing population, in particular highlighting that frailty is already present in those aged 50–64 and that healthcare use and costs related to older people with frailty are substantial. The statistical modelling suggests that age, sex, deprivation, ethnicity and urban/rural location are all independently associated with frailty onset and progression and costs. The large increases in individual costs with more severe frailty need to be considered together with overall population prevalence of frailty categories, and the larger overall total costs of care for people with mild or moderate frailty need to be taken into account when deciding which services would be most cost-effective. The simulation model provides projections of frailty prevalence and associated service use and costs over 10 years. Frailty prevalence, service use and costs will continue to rise in the future due in part to the ageing population. Scenario analyses indicate that reduction of incidence and slowing of progression, particularly before the age of 65, has potential to reduce future service demand in both primary and secondary care settings. For example, in relation to primary care, reducing frailty incidence in all age groups could result in reduced GP consultations and home visits as well as fewer medicines used. In secondary care settings, there could also be reductions in ED attendances, hospital admissions and outpatient appointments. Reducing unplanned hospitalisations in older people with frailty would have a more modest impact on costs. The outputs and findings from each element of the study will be collated into a commissioning toolkit, comprising guidance on drivers of frailty-related demand and simulation model outputs that can be used for prediction of future demand and exploration of different service scenarios. Study registration This study is registered as NCT04139278 www.clinicaltrials.gov. Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health and Social Care Delivery Research programme (NIHR award ref: 16/116/43) and is published in full in Health and Social Care Delivery Research; Vol. 12, No. 44. See the NIHR Funding and Awards website for further award information.
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- 2024
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100. Response: Commentary: Revised contraindications for the use of non-medical WB-electromyostimulation. Evidence-based German consensus recommendations'
- Author
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W. Kemmler, M. Fröhlich, O. Ludwig, C. Eifler, J. Berger, F. Micke, H. Kleinöder, B. Wegener, C. Zinner, F. C. Mooren, M. Teschler, A. Filipovic, S. Müller, K. England, J. Vatter, S. Authenrieth, M. Kohl, and S. von Stengel
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whole-body electromyostimulation ,contraindications ,safety ,exercise ,oncology ,tumor ,Sports ,GV557-1198.995 - Published
- 2024
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