171 results on '"David Horák"'
Search Results
52. 1154FFR guided acute complete revascularization versus culprit lesion only treatment in patients presenting with STEMI and multi vessel disease; final 3-year outcome data from Compare-Acute trial
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Compare-acute investigators, Pieter C. Smits, Rainer Hambrecht, Franz-Josef Neumann, David Horák, Pietro Leonida Laforgia, Paul Jl. Ong, Elmir Omerovic, Mohamed Abdel-Wahab, Carl E. Schotborgh, Ketil Lunde, Oskar Angerås, Adrian Wlodarczak, Gert Richardt, Zsolt Piroth, and B M Boxma-De Klerk
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medicine.medical_specialty ,Surrogate endpoint ,business.industry ,medicine.medical_treatment ,Ischemia ,Infarction ,medicine.disease ,Revascularization ,medicine ,In patient ,Radiology ,Myocardial infarction ,Outcome data ,Cardiology and Cardiovascular Medicine ,business ,Multi vessel disease - Abstract
Background Compare-Acute trial showed a 1-year superior outcome of FFR-guided acute complete revascularization (FFR-CR) compared to culprit-lesion-only revascularization (CLO) in patients presenting with ST-segment elevation myocardial infarction (STEMI) and multi-vessel disease (MVD). Long-term outcome results are unknown. Purpose To evaluate if FFR-CR strategy is superior to CLO strategy in terms of outcome at 3 year follow-up. Methods Compare-Acute is a multicenter, investigator-initiated prospective randomized controlled trial that involved 24 sites. Patients with STEMI and MVD were randomized, after successful primary PCI towards FFR-CR or CLO treatment strategies with a 1:2 ratio (295 pts vs 590 pts). All stenosis ≥50% in the non-infarct artery were investigated by FFR in both arms. In the FFR-CR arm, all non-culprit (NC) lesions with a FFR ≤0.80 were treated by PCI. In the CLO arm pts underwent blinded FFR procedure of the NC lesions. Further treatment of these lesions was based on symptoms and/or ischemia testing during follow-up with an allowed treatment window of 45 days. The primary endpoint was defined as a composite of all-cause mortality, non-fatal myocardial infarction, any revascularization and cerebrovascular events (MACCE) at 12 months. The major secondary endpoint is MACCE from both strategies up to 3-year follow-up. Results 1-year clinical outcomes have already been presented and published. At 36 months the composite end-point of MACCE occurred in 46 patients in the FFR-CR group vs 178 patients in the CLO group (15.6% vs 30.2%; HR 0.46, 95% CI 0.29–0.59; p MACCE-free survival at 3 years Conclusion With this analysis of the Compare-Acute trial we confirm that the benefit of a FFR-guided complete revascularization strategy in patients with STEMI and MVD is maintained at 3 years of follow-up. This difference is mainly driven by increased revascularizations in the CLO arm, but also by increased incidence of MI in the CLO subgroup with FFR+ lesions that were left untreated.
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- 2019
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53. Analyzing l1-loss and l2-loss Support Vector Machines Implemented in PERMON Toolbox
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Marek Pecha and David Horák
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Support vector machine ,Rate of convergence ,Computer science ,Quadratic programming ,Gradient projection ,Solver ,Algorithm ,Toolbox ,Linear separability ,Dual (category theory) - Abstract
This paper deals with investigating l1-loss and l2-loss l2-regularized Support Vector Machines implemented in PermonSVM – a part of our PERMON toolbox. The loss functions quantify error between predicted and correct classifications of samples in cases of non-perfectly linearly separable classifications. In numerical experiments, we study properties of Hessians related to performance score of models and analyze convergence rate on 4 public available datasets. The Modified Proportioning and Reduced Gradient Projection algorithm is used as a solver for the dual Quadratic Programming problem resulting from Support Vector Machines formulations.
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- 2019
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54. Advanced Approach of Material Region Detections on Fibre-Reinforced Concrete CT-Scans
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David Horák, Vaclav Hapla, Jiri Tomcala, Martin Cermak, and Marek Pecha
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Engineering drawing ,Engineering ,0211 other engineering and technologies ,020101 civil engineering ,Image processing ,02 engineering and technology ,ct-scan ,0201 civil engineering ,material region detection ,021105 building & construction ,Electrical and Electronic Engineering ,Cluster analysis ,Connected component ,Signal processing ,Pixel ,business.industry ,k-means clustering ,Vector quantization ,Pattern recognition ,k-means++ ,TK1-9971 ,fibre-reinforced concrete ,Benchmark (computing) ,Artificial intelligence ,Electrical engineering. Electronics. Nuclear engineering ,business - Abstract
Detections of material regions on CT-scans of solids are commonly treated manually by an expert. Although such manual detections have many advantages, some amount of human error is also incorporated. Moreover, expert opinions may vary significantly. We present an application of the k-means++ clustering as an alternative option to manual way of material area detections. k-means++ clustering is derived from k-means (the method of vector quantization, originally from signal processing), popular for cluster analysis in data mining and image processing communities. The algorithm s main advantages are its simple implementation and fast convergence to a local optimum of an objective function. We benchmark the suggested approach on transverse CT-scans of a fibre-reinforced concrete solid. Moreover, we introduce a technique for processing air distribution, such that the appropriate pixels detected as the pixels of air are converted into pixels representing concrete. The technique is based on the connected component algorithm. Benchmark and results of proposed method conclude the paper.
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- 2017
55. Urgent percutaneous coronary intervention of the left main bifurcation stenosis using
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David Horák, Lukáš Jaworski, and Amír Sibai
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Physics ,Theology ,Cardiology and Cardiovascular Medicine ,Critical Care and Intensive Care Medicine - Abstract
Bifurkacni leze jsou poměrně castým koronarografickým nalezem, jejichž řeseni je, navzdory pokrokům v instrumentariu i novým technikam, stale technicky a casově narocne. Je zaroveň spojeno s horsimi proceduralnimi i dlouhodobými klinickými výsledky. Dedikovane bifurkacni stenty byly vyvinuty s cilem zjednodusit intervencni lecbu bifurkacnich lezi a zlepsit jeji casne i dlouhodobe výsledky. V nasi kazuistice prezentujeme připad pacienta se subakutnim Q infarktem myokardu předni stěny s kritickou stenozou ve větveni kmene leve věncite tepny, který byl lecen primarni perkutanni koronarni intervenci (PCI) s použitim dedikovaneho bifurkacniho stentu Tryton Side Branch s velmi dobrým angiografickým a klinickým výsledkem.
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- 2016
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56. Non-Monotone Projected Gradient Method in Linear Elasticity Contact Problems with Given Friction
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David Horák, Lukáš Pospíšil, Jakub Kružík, and Martin Cermak
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Optimization problem ,lcsh:TJ807-830 ,Geography, Planning and Development ,lcsh:Renewable energy sources ,0211 other engineering and technologies ,quadratic programming ,SPG-QP ,010103 numerical & computational mathematics ,02 engineering and technology ,Management, Monitoring, Policy and Law ,01 natural sciences ,contact problems ,Applied mathematics ,Quadratic programming ,0101 mathematics ,lcsh:Environmental sciences ,Stiffness matrix ,Mathematics ,lcsh:GE1-350 ,tresca friction ,021103 operations research ,Renewable Energy, Sustainability and the Environment ,lcsh:Environmental effects of industries and plants ,Feasible region ,linear elasticity ,Quadratic function ,Finite element method ,lcsh:TD194-195 ,Convex optimization ,Gradient method - Abstract
We are focusing on the algorithms for solving the large-scale convex optimization problem in linear elasticity contact problems discretized by Finite Element method (FEM). The unknowns of the problem are the displacements of the FEM nodes, the corresponding objective function is defined as a convex quadratic function with symmetric positive definite stiffness matrix and additional non-linear term representing the friction in contact. The feasible set constraints the displacement subject to non-penetration conditions. The dual formulation of this optimization problem is well-known as a Quadratic Programming (QP) problem and can be considered as a most basic non-linear optimization problem. Understanding these problems and the development of efficient algorithms for solving them play the crucial role in the large-scale problems in practical applications. We shortly review the theory and examine the behavior and the efficiency of Spectral Projected Gradient method modified for QP problems (SPG-QP) on the solution of a toy example in MATLAB environment. Web of Science 12 20 art. no. 8674
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- 2020
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57. Outcomes of patients hospitalized for suspected acute coronary syndrome, in whom the diagnosis was not confirmed: Results from the CZECH-1 and CZECH-2 registries
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Petr Widimský, Petr Janský, František Toušek, Ladislav Pešl, Michael Aschermann, František Holm, Vratislav Pechman, Lenka Roblová, Petr Tousek, Richard Rokyta, David Horák, Michael Želízko, Jiří Jarkovský, and Pavel Červinka
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Musculoskeletal pain ,Gynecology ,Acute coronary syndrome ,medicine.medical_specialty ,business.industry ,Suspicion ,Heart failure ,medicine.disease ,3. Good health ,Internal medicine ,medicine ,Cardiology ,Cardiology and Cardiovascular Medicine ,business ,Outcome - Abstract
BackgroundSuspicion of acute coronary syndrome (ACS) is one of the most common reasons for hospital admission. However, ACS is not confirmed in a high proportion of these patients during hospitalization. Very few details exist about these patients.AimTo evaluate the clinical characteristics and outcomes of hospitalized patients with a suspicion for ACS that has not been confirmed and compare these results with patients with confirmed ACS.Methods and resultsData were used from the CZECH-1 and CZECH-2 registries, collected in November 2005 and October–November 2012. Both registries contain data from all consecutive patients who have been hospitalized with an initial diagnosis of ACS. ACS was not confirmed during hospitalization in 578 of 1921 patients (30.1%) in the CZECH-1 registry and in 372 of 1221 (30.5%) in the CZECH-2 registry. In both registries, higher proportions of females (52 vs. 36%; p
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- 2015
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58. Notes on the preliminary results of a linear two-class classifier in the PERMON toolbox
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Martin Čermák, Marek Pecha, David Horák, and Vaclav Hapla
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business.industry ,Computer science ,Pattern recognition ,Artificial intelligence ,business ,Classifier (UML) ,Toolbox - Published
- 2018
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59. The fatigue damage software parallelization
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David Horák, Jiří Tomčala, Marek Pecha, and Martin Čermák
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Software ,Computer science ,Simple (abstract algebra) ,business.industry ,Scalability ,Scalability testing ,Context (language use) ,Fatigue damage ,Parallel computing ,business ,Node level ,Finite element method - Abstract
The purpose of this paper is to describe the parallelization of PragTic - a fatigue damage simulator. There is a discussion about the former version inefficiency (caused by frequent I/O operations), parallel implementation and parallelized PragTic scalability testing. The parallelization is done at the node level where the nodes are defined in the context of the finite element mesh. We also ran a simple model example (hundreds of nodes), real world example (millions of nodes) and our approach is to test using numerical experiments where we achieve weak parallel scalability. At the end of the article, the results of numerical experiments are depicted in tables and graphs.
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- 2018
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60. P6496Trends in the treatment and outcomes of elderly patients with acute coronary syndrome: Results from the CZECH registries
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Petr Widimsky, M. Sluka, Jiri Jarkovsky, Anna Mala, David Horák, K. Staskova, Michael Aschermann, Petr Tousek, and M. Zelizko
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Czech ,medicine.medical_specialty ,Acute coronary syndrome ,business.industry ,030229 sport sciences ,030204 cardiovascular system & hematology ,medicine.disease ,language.human_language ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,language ,Medicine ,Cardiology and Cardiovascular Medicine ,business - Published
- 2017
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61. A Note on Massively Parallel Implementation of FETI for the Solution of Contact Problems
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David Horák, Jakub Kruzik, Jiri Tomcala, Vaclav Hapla, Martin Cermak, Radim Sojka, Marek Pecha, and Zdenek Dostal
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Discretization ,Computer science ,coarse problem ,quadratic programming ,02 engineering and technology ,Parallel computing ,mprgp ,01 natural sciences ,contact problems ,smalbe ,0203 mechanical engineering ,FETI ,tfeti ,Limit (mathematics) ,Quadratic programming ,0101 mathematics ,Electrical and Electronic Engineering ,Massively parallel ,permon ,Domain decomposition methods ,TK1-9971 ,010101 applied mathematics ,020303 mechanical engineering & transports ,Scalability ,Benchmark (computing) ,Electrical engineering. Electronics. Nuclear engineering - Abstract
The paper deals with the solution of large multibody contact problems using massively parallel computers and domain decomposition methods. These methods can solve the problems discretized by billions of nodal variables at the cost nearly proportional to the number of variables using up to thousands cores before the communication costs start to dominate the computational costs. The paper describes the ingredients essential for efficient massively parallel implementation that increases the parallel scalability beyond the limit mentioned above. The improvements were enhanced into a new software package PERMON which is based on PETSc. The performance of the algorithm is demonstrated on the solution of an academic benchmark discretized by nearlybillion of nodal variables.
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- 2017
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62. Parallel strategies for solving the FETI coarse problem in the PERMON toolbox
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Alena Vasatova, Jiří Tomčala, Martin Cermak, David Horák, Vaclav Hapla, Marek Pecha, Jakub Kružík, and Radim Sojka
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FETI ,Computer science ,Toolbox ,Computational science - Published
- 2017
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63. Echocardiographic assessment of global longitudinal right ventricular function in patients with an acute inferior ST elevation myocardial infarction and proximal right coronary artery occlusion
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Jan Přeček, Albert Louis, Martin Hutyra, Martin Kocher, Zbyněk Tüdös, Jana Zapletalová, Miloš Táborský, David Horák, Ales Smekal, and Tomáš Skála
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Male ,medicine.medical_specialty ,Time Factors ,Ventricular Dysfunction, Right ,medicine.medical_treatment ,Speckle tracking echocardiography ,Inferior Wall Myocardial Infarction ,Predictive Value of Tests ,Cardiac magnetic resonance imaging ,Internal medicine ,Occlusion ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Myocardial infarction ,Cardiac imaging ,Aged ,medicine.diagnostic_test ,business.industry ,Myocardium ,ST elevation ,Percutaneous coronary intervention ,Recovery of Function ,Middle Aged ,Prognosis ,medicine.disease ,Magnetic Resonance Imaging ,Myocardial Contraction ,Echocardiography, Doppler ,Coronary Occlusion ,ROC Curve ,Area Under Curve ,Conventional PCI ,Ventricular Function, Right ,Cardiology ,Female ,Hypotension ,Cardiology and Cardiovascular Medicine ,business - Abstract
Right ventricular (RV) myocardial infarction (MI) is a frequent concomitant of an acute inferior MI. We set out to determine the diagnostic value of speckle tracking echocardiography in comparison with cardiac magnetic resonance (CMR) for RV stunning and scar prediction. 55 patients (66 ± 11 years) with an acute inferior ST elevation MI who underwent percutaneous coronary intervention (PCI) of an occlusion in the proximal right coronary artery were prospectively enrolled. An echocardiography was done on the day of presentation and on the 5th day thereafter. A CMR was subsequently performed 1 month after the MI. The CMR was used to differentiate between the group with RV scar (n = 26) and without RV scar (n = 29). RV peak systolic longitudinal strain (RV-LS) at presentation determined RV scar (-21.1 ± 5.1% vs. -9.9 ± 4.6%, p0.0001). The RV-LS correlated with the scar extent (r = 0.83, p0.0001). RV-LS-15.8% had a sensitivity of 92% and a specificity of 83% in RV scar prediction (AUC 0.93). RV-LS was superior to TAPSE and TDI in determining the presence of RV scar. According to RV-LS values at presentation and on the 5th day, 3 subgroups were defined: G1-normal deformation (RV-LS-20%), G2-RV stunning (baseline RV-LS-20%, 5th day RV-LS-20%) and G3-persistent RV dysfunction (unchanged RV-LS-20%). In G1, there was neither RV scar nor clinically relevant hypotension. In G2, 58% of patients developed RV scar and 36% had hypotension. In the G3, 83% developed RV scar and 55% had hypotension. The myocardial deformation analysis could provide an early prediction of RV scar. It allowed the patients to be divided into subgroups with normal RV function, stunning and persistent RV dysfunction.
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- 2014
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64. Trends in epidemiology and the treatment of acute coronary syndromes in the Czech Republic: Comparison of the CZECH-1 and CZECH-2 registries
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František Holm, Petr Tousek, Petr Widimský, Ladislav Pešl, Michael Aschermann, Richard Rokyta, David Horák, Michael Želízko, Jiří Jarkovský, Petr Janský, Pavel Červinka, and František Toušek
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Pediatrics ,medicine.medical_specialty ,Acute coronary syndrome ,Epidemiology ,Hospitalized patients ,Population ,medicine ,ST segment ,In patient ,education ,Gynecology ,education.field_of_study ,Unstable angina ,business.industry ,Incidence ,Incidence (epidemiology) ,Primary percutaneous coronary intervention ,medicine.disease ,3. Good health ,Treatment ,population characteristics ,Cardiology and Cardiovascular Medicine ,business ,geographic locations - Abstract
Uvod: Spektrum pacientů s akutnim koronarnim syndromem (AKS) se v důsledku postupneho starnuti obyvatelstva v průběhu poslednich dvou desetileti změnilo.Cil: Analyzovali jsme změny v epidemiologii a v lecebných strategiich ve dvou velkých registrech, ktere byly v letech 2005 a 2012 provedeny u přesně definovaných populaci Ceske republiky.Metody a výsledky: Do registrů CZECH-1 a CZECH-2 byli zařazovani vsichni po sobě jdouci hospitalizovani pacienti se vstupni diagnozou AKS v obdobi jednoho nebo dvou měsiců. Registrů CZECH-1 a CZECH-2 se zucastnilo 36, respektive 32 nemocnic. Do registru CZECH-1 bylo zařazeno celkem 1 921 pacientů a do registru CZECH-2 celkem 1 221 pacientů. Pacienti zařazeni do registru CZECH-2 byli starsi než pacienti v registru CZECH-1 (68 ± 12 vs. 66 ± 12 let; p 0,05) pacientů v registru CZECH-2. Urgentni angiografie u pacientů s infarktem myokardu s elevacemi useku ST (STEMI) byla provedena v 92 %, resp. 94 % připadů (p > 0,05); z tohoto poctu byla v 87 %, resp. 89 % připadů nasledně provedena primarni PCI. Mezi registry neexistovaly žadne rozdily v nemocnicni mortalitě (4,2 vs. 4,4 %; p = 0,805) ani v mortalitě pacientů s konecnou diagnozou Q-infarktu myokardu (Q-IM) (10,3 vs. 10,7 %; p = 0,870) nebo non-Q infarktu myokardu (non-Q-IM) (4,7 vs. 3,8 %; p = 0,497). Odhadovana incidence potvrzeneho AKS a STEMI v reprezentativnim populacnim vzorku z obou registrů byla 3 248 a 661 připadů/milion obyvatel/rok v registru CZECH-1 a 2 149 a 652 připadů/milion obyvatel/rok v registru CZECH-2. Pokles incidence AKS byl teměř výhradně důsledkem statisticky významneho poklesu incidence nestabilni anginy pectoris jako konecne diagnozy. Při propustěni byly pacientům s potvrzeným AKS v registrech CZECH-1, resp. CZECH-2 předepisovany nasledujici leky: kyselina acetylsalicylova (95 vs. 94 %; p > 0,05), clopidogrel (60 vs. 76,4 %; p 0,05), inhibitory enzymu konvertujiciho angiotensin (50 vs. 78 %; p ≤ 0,001) a statiny (75 vs. 90 %; p < 0,001).Zavěr: Mezi roky 2005 a 2012 se v Ceske republice zvýsil věk pacientů hospitalizovaných pro AKS. Invazivni reperfuzni strategie u pacientů se STEMI byla v obou registrech použita ve vysokem procentu připadů. Celkový osud pacientů s potvrzeným AKS se mezi roky 2005 a 2012 nezměnil. Odhadovana incidence AKS se snižila v důsledku poklesu poctu pacientů s nestabilni anginou pectoris. AbstractBackground: The clinical spectrum of acute coronary syndrome (ACS) has changed due to a progressively ageing population over the last two decades.Aim: We analysed the changes in the epidemiological and treatment strategies between two large registries that were performed in 2005 and 2012 in well-defined populations of the Czech Republic.Methods and results: The CZECH-1 and CZECH-2 registries enrolled all consecutive hospitalized patients with an initial diagnosis of ACS during a 1- or 2-month period, respectively. Thirty-six and 32 hospitals participated in the CZECH-1 and CZECH-2 registries, respectively. A total of 1 921 patients were enrolled in the CZECH-1 registry and 1 221 patients participated in the CZECH-2 registry. Patients enrolled in the CZECH-2 registry were older than those in CZECH-1 (68 ± 12 vs. 66 ± 12 years; p 0.05) of the patients in the CZECH-1 and CZECH-2 registries, respectively. Urgent angiography in patients with ST segment elevation myocardial infarction (STEMI) was performed in 92 and 94% of the patients (p > 0.05), respectively; of these, 87 and 89% subsequently underwent primary PCI. There were no significant differences in in-hospital (4.2 vs. 4.4%, p = 0.805) or in the mortality of patients with a final diagnosis of Q-myocardial (10.3 vs. 10.7%; p = 0.870) or non-Q-myocardial infarction (4.7 vs. 3.8%; p = 0.497) between the two registries. The estimated incidence of confirmed ACS and STEMI in a representative population from both registries was 3 248 and 661 cases/million individuals/year in the CZECH-1 registry and 2 149 and 652 cases/million individuals/year in the CZECH-2 registry. The fall in ACS incidence was almost exclusively due to a significant decrease in the incidence of unstable angina as the final diagnosis. At discharge, the patients with confirmed ACS were administered the following medications: aspirin (95 vs. 94%; p > 0.05), clopidogrel (60 vs. 76.4%; p 0.05), angiotensin-converting enzyme (ACE) inhibitors (50 vs. 78%; p ≤ 0.001) and statins (75 vs. 90%; p < 0.001) in the CZECH-1 and CZECH-2 registries, respectively.Conclusion: In the Czech Republic, the age of the patients hospitalized with ACS increased between 2005 and 2012. Invasive reperfusion strategy for patients with STEMI was very high in both registries. The overall outcome in patients with confirmed ACS did not change between 2005 and 2012. The estimated incidence of ACS decreased due to the fall in unstable angina pectoris.
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- 2014
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65. ST-Segment Elevation Myocardial Infarction Treated by Radial or Femoral Approach in a Multicenter Randomized Clinical Trial
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Jan Pešek, Abdul Al Mawiri, Pavel Polansky, Zdenek Sembera, Josef Stasek, Jaroslav Dušek, Michal Šmíd, Ondrej Aschermann, Jiri Koza, Olivier Costerousse, Ivo Bernat, Miroslav Brtko, Olivier F. Bertrand, David Horák, Jan Vojáček, Richard Rokyta, Vlado Hrabos, Josef Bis, Martin Mates, and Petr Ostadal
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Percutaneous coronary intervention ,medicine.disease ,Surgery ,Multicenter trial ,Intensive care ,Conventional PCI ,medicine ,Clinical endpoint ,Cumulative incidence ,Myocardial infarction ,business ,Cardiology and Cardiovascular Medicine ,Stroke - Abstract
Objectives This study sought to compare radial and femoral approaches in patients presenting with ST-segment elevation myocardial infarction (STEMI) and undergoing primary percutaneous coronary intervention (PCI) by high-volume operators experienced in both access sites. Background The exact clinical benefit of the radial compared to the femoral approach remains controversial. Methods STEMI-RADIAL (ST Elevation Myocardial Infarction treated by RADIAL or femoral approach) was a randomized, multicenter trial. A total of 707 patients referred for STEMI
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- 2014
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66. The energy consumption optimization of the BLAS routines
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Martin Beseda, David Horák, Lubomir Riha, Jakub Kruzik, Martin Cermak, and Radim Sojka
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Computer science ,Energy consumption optimization ,CPU frequency ,05 social sciences ,MathematicsofComputing_NUMERICALANALYSIS ,050301 education ,Energy consumption ,Matrix multiplication ,Computational science ,BLAS ,energy consumption ,Kernel (statistics) ,Computer Science::Mathematical Software ,0501 psychology and cognitive sciences ,READEX ,0503 education ,Energy (signal processing) ,050104 developmental & child psychology - Abstract
The paper deals with the energy consumption evaluation of selected Sparse and Dense BLAS Level 1, 2 and 3 routines. Authors employed AXPY, Sparse Matrix-Vector, Sparse Matrix-Matrix, Dense Matrix-Vector, Dense Matrix-Matrix and Sparse Matrix-Dense Matrix multiplication routines from Intel Math Kernel Library (MKL). The measured characteristics illustrate the different energy consumption of BLAS routines, as some operations are memory-bounded and others are compute-bounded. Based on their recommendations one can explore dynamic frequency switching to achieve significant energy savings up to 23%.
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- 2017
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67. Efficient lifetime estimation techniques for general multiaxial loading
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Radim Halama, David Horák, Marek Pecha, Jiří Tomčala, Jan Papuga, Vaclav Hapla, Jakub Kružík, František Fojtík, Martin Cermak, Martin Fusek, Jaroslav Rojíček, and Radim Sojka
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Basis (linear algebra) ,business.industry ,Computer science ,Computation ,Scalability ,Phase (waves) ,Structural engineering ,Plasticity ,Solver ,business ,Finite element method ,Domain (software engineering) - Abstract
In this paper, we discuss and present our progress toward a project, which is focused on fatigue life prediction under multiaxial loading in the domain of low-cycle fatigue, i.e. cases, where the plasticity cannot be neglected. First, the elastic-plastic solution in the finite element analysis is enhanced and verified on own experiments. Second, the method by Jiang describing the instantaneous damage increase by analyses of load time by time, is in implementation phase. In addition, simplified routines for conversion of elastic stresses-strains to elastic-plastic ones as proposed by Firat and Ye et.al. are evaluated on the basis of data gathered from external sources. In order to produce high quality complex analyses, which could be feasible in an acceptable time, and allow the period for next analyses of results to be expanded; the core of PragTic fatigue solver used for all fatigue computations are being re-implemented to get the fully parallelized scalable solution.
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- 2017
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68. Energy consumption optimization of the total-FETI solver by changing the CPU frequency
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Joseph Schuchart, David Horák, Martin Beseda, Radim Sojka, Martin Cermak, Jakub Kruzik, and Lubomir Riha
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energy conservation ,Computer science ,Energy consumption optimization ,power aware computing ,05 social sciences ,CPU frequency ,microprocessor chips ,050301 education ,Parallel computing ,finite element analysis ,Solver ,BLAS routines ,FETI ,0501 psychology and cognitive sciences ,Central processing unit ,0503 education ,READEX ,050104 developmental & child psychology ,field programmable gate arrays - Abstract
The paper deals with the energy consumption evaluation of the Finite Element Tearing and Interconnect (FETI) based solvers of linear systems, which is an established method for solving real-world engineering problems. Authors evaluated the effect of the CPU frequency on the energy consumption of the FETI solver using a linear elasticity 3D cube synthetic benchmark. In this problem, the effect of frequency tuning on the energy consumption of the essential processing kernels of the FETI method was evaluated. The paper provides results for two types of frequency tuning: (1) static tuning and (2) dynamic tuning. For static tuning experiments, the frequency is set before execution and kept constant during the runtime. For dynamic tuning, the frequency is changed during the program execution to adapt the system to the actual needs of the application. The paper shows that static tuning brings up 12% energy savings when compared to default CPU settings (the highest clock rate). The dynamic tuning improves this further by up to 3%.
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- 2017
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69. Cardiovascular Function in Long-Term Hematopoietic Cell Transplantation Survivors
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Stephen J. Forman, George Mills, Jessica M. Scott, Aida Siyahian, David Horák, Saro H. Armenian, Smita Bhatia, Jennifer Berano Teh, Pamela S. Douglas, and Lee W. Jones
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Adult ,medicine.medical_specialty ,medicine.medical_treatment ,Population ,Hematopoietic stem cell transplantation ,030204 cardiovascular system & hematology ,Article ,Pulmonary function testing ,03 medical and health sciences ,Ventricular Dysfunction, Left ,0302 clinical medicine ,Oxygen Consumption ,Internal medicine ,Medicine ,Humans ,Survivors ,education ,Adverse effect ,Respiratory exchange ratio ,Aged ,Transplantation ,education.field_of_study ,Ejection fraction ,business.industry ,Hematopoietic Stem Cell Transplantation ,Stroke Volume ,Hematology ,Stroke volume ,Middle Aged ,Surgery ,Respiratory Function Tests ,Cardiovascular Diseases ,030220 oncology & carcinogenesis ,Cardiology ,Exercise Test ,business ,human activities - Abstract
Peak oxygen consumption (VO2peak), as measured by cardiopulmonary exercise testing (CPET), is a powerful independent predictor of cardiovascular disease (CVD) and all-cause mortality in a broad range of populations. We assessed the safety and feasibility of CPET in aging long-term hematopoietic cell transplantation (HCT) survivors, a population at high risk for premature onset of CVD. Next, we examined how organ-specific impairments (eg, cardiac, pulmonary, hematologic) impact VO2peak after HCT. Twenty consecutive HCT survivors underwent a comprehensive assessment of cardiopulmonary health that included CPET, echocardiography with strain, pulmonary function testing, 6-minute walk test, and timed up and go. Median age at assessment was 67.4 years (range, 42 to 75), and median time from HCT was 9.8 years (range, 3 to 20). No adverse events were observed during CPET procedures, and 95% of studies were considered to be at "peak" effort (respiratory exchange ratio ≥ 1.10). VO2peak was on average 22% less than predicted, and allogeneic HCT survivors had markedly lower VO2peak when compared with autologous HCT survivors (18.2 mL/kg/min versus 22.2 mL/kg/min; P = .05). Six participants (30%) had VO2peak ≤ 16 mL/kg/min, a threshold associated with a 9-foldrisk of death in patients undergoing HCT. Despite the presence of normal (>50%) resting left ventricular ejection fraction in all participants, 25% had markedly abnormal left ventricular longitudinal strain, an advanced echocardiographic measure of myocardial dysfunction. These findings highlight the role of stress-based measures and advanced myocardial imaging to characterize CVD risk in HCT survivors, setting the stage for tailored interventions to prevent CVD with its attendant morbidity and mortality.
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- 2016
70. Myocardial blush and microvascular reperfusion following manual thrombectomy during percutaneous coronary intervention for ST elevation myocardial infarction: insights from the TOTAL trial
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Tahir Hamid, David Horák, Divyesh Sharma, Joseph Chiha, Sasko Kedev, Christopher B. Overgaard, Vladimír Džavík, Goran Stankovic, Sanjit S. Jolly, William Chan, Michael Rokoss, Sanh Bui, Hannu O. Romppanen, Felipe Costa Fuchs, Saleem Kassam, magdi el–omar, Peggy Gao, Vinoda Sharma, Saqib Chowdhary, R. Leung, and Tej Sheth
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medicine.medical_specialty ,medicine.medical_treatment ,Myocardial Infarction ,030204 cardiovascular system & hematology ,Coronary Angiography ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Percutaneous Coronary Intervention ,Randomized controlled trial ,St elevation myocardial infarction ,law ,Internal medicine ,medicine ,Clinical endpoint ,Humans ,cardiovascular diseases ,030212 general & internal medicine ,Myocardial infarction ,Angioplasty, Balloon, Coronary ,FASTTrack Clinical Research ,Thrombectomy ,business.industry ,Coronary Thrombosis ,Percutaneous coronary intervention ,Thrombolysis ,medicine.disease ,3. Good health ,Surgery ,surgical procedures, operative ,Treatment Outcome ,Conventional PCI ,Cardiology ,ST Elevation Myocardial Infarction ,Cardiology and Cardiovascular Medicine ,business ,TIMI - Abstract
Aims Thrombectomy during primary percutaneous coronary intervention (PPCI) for ST elevation myocardial infarction (STEMI) has been thought to be an effective therapy to prevent distal embolization and improve microvascular perfusion. The TOTAL trial ( N = 10 732), a randomized trial of routine manual thrombectomy vs. PCI alone in STEMI, showed no difference in the primary efficacy outcome. This angiographic sub-study was performed to determine if thrombectomy improved microvascular perfusion as measured by myocardial blush grade (MBG). Methods and results Of the 10 732 patients randomized, 1610 randomly selected angiograms were analysable by the angiographic core laboratory. Primary outcomes included MBG and post-PCI thrombolysis in myocardial infarction (TIMI) flow grade. Secondary outcomes included distal embolization, PPCI complications, and each component of the complications. The primary end point of final myocardial blush (221 [28%] 0/1 for thrombectomy vs. 246 {30%} 0/1 for PCI alone group, P = 0.38) and TIMI flow (712 [90%] TIMI 3 for thrombectomy vs. 733 [89.5%] TIMI 3 for PCI alone arm, P = 0.73) was similar in the two groups. Thrombectomy was associated with a significantly reduced incidence of distal embolization compared with PCI alone (56 [7.1%] vs. 87 [10.7%], P = 0.01). In multivariable analysis, distal embolization was an independent predictor of mortality (HR 3.00, 95% CI 1.19–7.58) while MBG was not (HR 2.73, 95% CI 0.94–5.3). Conclusions Routine thrombectomy during PPCI did not result in improved MBG or post-PCI TIMI flow grade but did reduce distal embolization compared with PCI alone. Distal embolization and not blush grade is independently associated with mortality.
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- 2016
71. Rotational atherectomy of critical left main stenosis in NSTE-ACS complicated with cardiogenic shock
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Rostislav Polášek, Vladimír Hraboš, David Horák, Zdeněk Šembera, and Pavel Sábl
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medicine.medical_specialty ,business.industry ,Cardiogenic shock ,Rotational atherectomy ,Acute myocardial infarction left main coronary artery ,medicine.disease ,Stenosis ,medicine.anatomical_structure ,Acute anterolateral myocardial infarction ,Stent deployment ,Internal medicine ,Cardiology ,Medicine ,ST segment ,Radiology ,business ,Cardiology and Cardiovascular Medicine ,Nste acs ,Artery - Abstract
We report the case of a patient with acute anterolateral myocardial infarction without ST segment elevations and incipient cardiogenic shock due to complex high grade left main (LM) stenosis and tight calcified ostial left anterior descending (LAD) artery stenosis. Rotablation followed by stent deployment achieved a successful angiographic outcome with no associated clinical complications. During 30 days follow-up, the patient remains stable. An acute interventional approach in unprotected LM coronary stenosis is associated with high procedural risk. Combining that procedure, i.e., rotational atherectomy, with stent placement enhanced procedural success and clinical outcome in this case.
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- 2012
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72. Predictors of good clinical outcome in acute stroke patients treated with intravenous thrombolysis
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Tomáš Veverka, Michal Král, Miroslav Heřman, Petr Kaňovský, Andrea Bártková, David Školoudík, Roman Herzig, Daniel Šaňák, Jana Zapletalová, and David Horák
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medicine.medical_specialty ,Receiver operating characteristic ,Vascular disease ,Cerebral infarction ,business.industry ,medicine.medical_treatment ,General Medicine ,Thrombolysis ,medicine.disease ,Logistic regression ,Surgery ,Central nervous system disease ,Neurology ,Modified Rankin Scale ,Internal medicine ,Cardiology ,medicine ,cardiovascular diseases ,Neurology (clinical) ,business ,Stroke - Abstract
Saňak D, Herzig R, Zapletalova J, Horak D, Kral M, Skoloudik D, Bartkova A, Veverka T, Heřman M, Kaňovský P. Predictors of good clinical outcome in acute stroke patients treated with intravenous thrombolysis. Acta Neurol Scand: 2011: 123: 339–344. © 2010 John Wiley & Sons A/S. Objectives – Intravenous thrombolysis (IVT) is considered an effective treatment for acute ischemic stroke (IS). However, not all treated patients may achieve good outcome. The aim was to evaluate whether the initial NIHSS and DWI infarct volume could be the predictors for good outcome after IVT. Patients and Methods – The set of 125 patients with consecutive hemispheric IS (78 men; mean age 66.0 ± 12.1 years) treated with IVT within 3 h was analyzed. DWI volume was measured on admission. Good outcome was defined as a score 0-2 in modified Rankin Scale. Results – Multivariate logistic regression analysis showed initial NIHSS as an independent predictor of good outcome (P = 0.001). ROC curves showed baseline NIHSS ≤13.5 points and DWI volume ≤13.7 ml as cut-offs related to good outcome. Conclusions – The initial NIHSS and DWI volume might be the predictors for good clinical outcome in acute stroke patients treated with IVT. The initial NIHSS score seems to be more accurate.
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- 2011
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73. TWO YEAR RESULTS FROM THE COMPARE-ACUTE TRIAL
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Gert Richardt, Pieter C. Smits, Bianca M. Boxma-de Klerk, Carl E. Schotborgh, Adrian Wlodarczack, Zsolt Piroth, Elmir Omerovic, Mohamed Abdel-Wahab, David Horák, Franz-Josef Neumann, Paul J.L. Ong, Maasstad Ziekenhuis, Petr Kala, and Ketil Lunde
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,030204 cardiovascular system & hematology ,Revascularization ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Angiography ,medicine ,Cardiology ,Infarct related artery ,cardiovascular diseases ,030212 general & internal medicine ,Cardiology and Cardiovascular Medicine ,business ,Mace - Abstract
Recent trials in multivessel STEMI patients show that a strategy of complete revascularization in the acute or sub-acute phase guided by angiography (PRAMI, CvLPRIT) or FFR (PRIMULTI, COMPARE-ACUTE) improves the composite endpoint of MACE in comparison to an infarct related artery (IRA) only
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- 2018
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74. Is atrial fibrillation associated with poor outcome after thrombolysis?
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Ivanka Vlachová, Petr Kanovský, David Školoudík, Martin Hutyra, Andrea Bártková, Tomáš Veverka, Daniel Sanak, Michal Král, Roman Herzig, David Horák, and Jana Zapletalová
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Adult ,Male ,Time Factors ,medicine.medical_treatment ,Severity of Illness Index ,Brain Ischemia ,Modified Rankin Scale ,Atrial Fibrillation ,Severity of illness ,Humans ,Medicine ,Thrombolytic Therapy ,Stroke ,Aged ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Cerebral infarction ,Vascular disease ,Atrial fibrillation ,Retrospective cohort study ,Thrombolysis ,Middle Aged ,Prognosis ,medicine.disease ,Treatment Outcome ,Neurology ,Anesthesia ,Acute Disease ,Female ,Neurology (clinical) ,business - Abstract
Atrial fibrillation (AF) is considered a predictor for severe stroke and poor outcome. The aim was to evaluate whether AF is associated with poor outcome in acute ischemic stroke (IS) patients treated with intravenous thrombolysis (IVT). In a retrospective study, 157 consecutive IS patients (98 males, mean age 67.3 +/- 10.2 years), treated with IVT within 3 hours from stroke onset, were divided into two groups according to presence/absence of AF. Neurological deficit was evaluated using the NIHSS on admission, 24 hours, and 7 days later, while the 90-day clinical outcome was assessed using the modified Rankin Scale (mRS). A total of 66 patients (38 males) presented with AF. The baseline NIHSS was 13.3 +/- 5.4 in AF and 11.0 +/- 5.1 points in non-AF patients (P = 0.006). AF patients had arterial occlusions more frequently in the baseline MRA (54.5% in AF versus 25.3% in non-AF, P = 0.0002). No differences were found between groups in clinical improvement after 24 hours and 7 days or in rate of achieved recanalizations. AF patients had significantly poorer 90-day clinical outcome than non-AF patients (median mRS 2.5 vs. 1.0). Patients with AF had significantly worse 90-day clinical outcome after IVT compared to those without AF, probably due to more severe baseline neurological deficits and the greater number of arterial occlusions in the MRA before IVT.
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- 2010
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75. Comparison of gadodiamide-enhanced MR angiography to intraarterial digital subtraction angiography for evaluation of renal artery stenosis: Results of a phase III multicenter trial
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Anthony W. Stanson, Rubin Sheng, Manuela A. Achauer, Vesna D. Garovic, Thomas Kittner, and David Horák
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Gadolinium DTPA ,Male ,medicine.medical_specialty ,Internationality ,Population ,Contrast Media ,Renal Artery Obstruction ,Renal artery stenosis ,Models, Biological ,Sensitivity and Specificity ,Magnetic resonance angiography ,Multicenter trial ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,education ,education.field_of_study ,medicine.diagnostic_test ,business.industry ,Gadodiamide ,Angiography, Digital Subtraction ,Reproducibility of Results ,Gold standard (test) ,Digital subtraction angiography ,Image Enhancement ,medicine.disease ,Nephrogenic systemic fibrosis ,Female ,Radiology ,business ,Magnetic Resonance Angiography ,medicine.drug - Abstract
Purpose: To evaluate the efficacy and safety of 0.1 mmol/kg gadodiamide administration for contrast-enhanced magnetic resonance angiography (MRA) in detecting hemodynamically relevant renal artery stenosis (RAS) when compared with intraarterial digital subtraction angiography (IA-DSA) as the gold standard. Materials and Methods: In a multicenter, controlled study, 395 patients with suspected or known RAS were included. Three independent readers evaluated the MRA images. Two readers evaluated the IA-DSA images and subsequently achieved consensus. The sensitivities and specificities of gadodiamide-enhanced MRA were analyzed at the per-patient and per-vessel levels (exact 1-sided binomial test at α = 0.025 with 95% confidence interval). Results: A total of 335 patients who had available standard of truth and MRA tests were included in the all-subjects efficacy population: 55.5% (186/335) men and 44.5% women with a mean age of 63 ± 13 years (range 17–85 years). The sensitivities and specificities ranged from 81% to 86% for all independent readers at the per-patient analysis based on subjects with the diagnostic images. Similar results were achieved with per-vessel level analysis. Fewer than 1% of patients had adverse event associated with gadodiamide administration. There were no cases of nephrogenic systemic fibrosis (NSF) reported. Conclusion: Gadodiamide administration at the labeled dose of 0.1 mmol/kg for contrast-enhanced MRA achieved equivalent results compared to IA-DSA in evaluation of RAS and was well tolerated. J. Magn. Reson. Imaging 2010; 31: 390–397. © 2010 Wiley-Liss, Inc.
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- 2010
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76. Acute coronary syndromes without persistent ST elevation in the light of the 2007 and 2008 guidelines
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David Horák
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medicine.medical_specialty ,business.industry ,ST elevation ,Internal medicine ,Cardiology ,medicine ,Cardiology and Cardiovascular Medicine ,business - Published
- 2009
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77. Acute ischaemic stroke in pregnancy: a severe complication of ovarian hyperstimulation syndrome
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Roman Herzig, David Horák, Pavel Otruba, Daniel Sanak, Petr Hluštík, Jiri Dostal, Andrea Bártková, Petr Kanovsky, and Ivanka Vlachová
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Adult ,Middle Cerebral Artery ,medicine.medical_treatment ,Pregnancy Complications, Cardiovascular ,Ovarian hyperstimulation syndrome ,Infarction ,Dermatology ,Basal Ganglia ,Magnetic resonance angiography ,Brain Ischemia ,Ovarian Hyperstimulation Syndrome ,Pregnancy ,medicine.artery ,medicine ,Humans ,cardiovascular diseases ,Neuroradiology ,medicine.diagnostic_test ,business.industry ,Anticoagulants ,Infarction, Middle Cerebral Artery ,General Medicine ,Embryo Transfer ,medicine.disease ,Magnetic Resonance Imaging ,Paresis ,Psychiatry and Mental health ,Treatment Outcome ,Hemiparesis ,Anesthesia ,Acute Disease ,Middle cerebral artery ,Female ,Ovulation induction ,Neurology (clinical) ,medicine.symptom ,Complication ,business ,Magnetic Resonance Angiography - Abstract
Ovarian hyperstimulation syndrome (OHSS) is the most serious complication of sterility treatment. It is characterised by ovarian enlargement, ascites, electrolyte disturbance, hypovolaemia and haemoconcentration. A case of ischaemic stroke due to right middle cerebral artery (MCA) occlusion in a young female with OHSS after pharmacological treatment of sterility is reported. Left central hemiparesis occurred suddenly within a few days after the embryo transfer. Magnetic resonance imaging diffusion-weighted images showed infarction in the right basal ganglia and magnetic resonance angiography (MRA) revealed the occlusion of the M1 segment of the right MCA. The haemodilution and the anticoagulation therapy were effective. Twenty-four hours after the stroke onset, MRA showed MCA recanalisation. The neurological deficit resolved completely within 3 months. The patient delivered 2 healthy infants at term. This case emphasises that the recent advent of ovulation induction and reproductive techniques is a newly recognised cause of cerebral stroke in otherwise healthy females.
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- 2008
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78. Transcatheter Closure of a Chronic Iatrogenic Arteriovenous Fistula Between the Carotid Artery and the Brachiocephalic Vein with an Amplatzer Duct Occluder in Combination with a Carotid Stent
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Anush Babu, Miroslav Lojík, Josef Bis, David Horák, Jan Vojáček, Pavel Polansky, Miroslav Brtko, Josef Stasek, and Jaroslav Dušek
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Cardiac Catheterization ,medicine.medical_specialty ,Carotid arteries ,Fistula ,Iatrogenic Disease ,education ,Arteriovenous fistula ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Brachiocephalic vein ,Aged ,Brachiocephalic Veins ,medicine.diagnostic_test ,business.industry ,Angiography ,medicine.disease ,Surgery ,Shunt (medical) ,medicine.anatomical_structure ,Arteriovenous Fistula ,Chronic Disease ,cardiovascular system ,Female ,Stents ,Radiology ,Carotid Artery Injuries ,Tomography, X-Ray Computed ,Cardiology and Cardiovascular Medicine ,business ,Duct (anatomy) ,Carotid stent - Abstract
We report an original method of transcatheter closure of an arteriovenous fistula using the combination of an Amplatzer PDA occluder and a carotid stent. The fistula was between the left carotid artery and the brachiocephalic vein. The patient had significant left-to-right shunt and was highly symptomatic. Due to the large orifice and pseudoaneurysmatic enlargement of the fistula, we had to use a large Amplatzer PDA occluder and the protruding part of the PDA device disk had to be covered with a carotid stent. The fistula was completely closed. The patient stopped having symptoms and, 2 years after the procedure, the effect persists.
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- 2008
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79. Outcomes after thrombus aspiration for ST elevation myocardial infarction: 1-year follow-up of the prospective randomised TOTAL trial
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Goran Stankovic, Sanjit S. Jolly, Asim N. Cheema, Sunil V. Rao, Madhu K. Natarajan, Brandi Meeks, Alvaro Avezum, Shamir R. Mehta, Anthony H. Gershlick, Magdi El-Omar, John A. Cairns, Michael Rokoss, Olivier F. Bertrand, David Horák, Raul Moreno, Kari Niemelä, Vladimír Džavík, Shahar Lavi, Peggy Gao, James L. Velianou, Robert C. Welsh, Philippe Gabriel Steg, Saleem Kassam, Ivo Bernat, Warren J. Cantor, Saqib Chowdhary, Ravinay Bhindi, Salim Yusuf, Sasko Kedev, R. Leung, Tej Sheth, and Samir Pancholy
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Male ,medicine.medical_specialty ,medicine.medical_treatment ,Myocardial Infarction ,030204 cardiovascular system & hematology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Percutaneous Coronary Intervention ,Randomized controlled trial ,law ,medicine ,Humans ,030212 general & internal medicine ,Myocardial infarction ,cardiovascular diseases ,Prospective Studies ,Prospective cohort study ,Stroke ,Aged ,Thrombectomy ,Heart Failure ,Intention-to-treat analysis ,business.industry ,Cardiogenic shock ,Coronary Thrombosis ,Percutaneous coronary intervention ,Shock ,General Medicine ,medicine.disease ,Combined Modality Therapy ,3. Good health ,Surgery ,surgical procedures, operative ,Cardiovascular Diseases ,Conventional PCI ,cardiovascular system ,Female ,business ,Follow-Up Studies - Abstract
Summary Background Two large trials have reported contradictory results at 1 year after thrombus aspiration in ST elevation myocardial infarction (STEMI). In a 1-year follow-up of the largest randomised trial of thrombus aspiration, we aimed to clarify the longer-term benefits, to help guide clinical practice. Methods The trial of routine aspiration ThrOmbecTomy with PCI versus PCI ALone in Patients with STEMI (TOTAL) was a prospective, randomised, investigator-initiated trial of routine manual thrombectomy versus percutaneous coronary intervention (PCI) alone in 10 732 patients with STEMI. Eligible adult patients (aged ≥18 years) from 87 hospitals in 20 countries were enrolled and randomly assigned (1:1) within 12 h of symptom onset to receive routine manual thrombectomy with PCI or PCI alone. Permuted block randomisation (with variable block size) was done by a 24 h computerised central system, and was stratified by centre. Participants and investigators were not masked to treatment assignment. The trial did not show a difference at 180 days in the primary outcome of cardiovascular death, myocardial infarction, cardiogenic shock, or heart failure. However, the results showed improvements in the surrogate outcomes of ST segment resolution and distal embolisation, but whether or not this finding would translate into a longer term benefit remained unclear. In this longer-term follow-up of the TOTAL study, we report the results on the primary outcome (cardiovascular death, myocardial infarction, cardiogenic shock, or heart failure) and secondary outcomes at 1 year. Analyses of the primary outcome were by modified intention to treat and only included patients who underwent index PCI. This trial is registered with ClinicalTrials.gov, number NCT01149044. Findings Between Aug 5, 2010, and July 25, 2014, 10 732 eligible patients were enrolled and randomly assigned to thrombectomy followed by PCI (n=5372) or to PCI alone (n=5360). After exclusions of patients who did not undergo PCI in each group (337 in the PCI and thrombectomy group and 331 in the PCI alone group), the final study population comprised 10 064 patients (5035 thrombectomy and 5029 PCI alone). The primary outcome at 1 year occurred in 395 (8%) of 5035 patients in the thrombectomy group compared with 394 (8%) of 5029 in the PCI alone group (hazard ratio [HR] 1·00 [95% CI 0·87–1·15], p=0·99). Cardiovascular death within 1 year occurred in 179 (4%) of the thrombectomy group and in 192 (4%) of 5029 in the PCI alone group (HR 0·93 [95% CI 0·76–1·14], p=0·48). The key safety outcome, stroke within 1 year, occurred in 60 patients (1·2%) in the thrombectomy group compared with 36 (0·7%) in the PCI alone group (HR 1·66 [95% CI 1·10–2·51], p=0·015). Interpretation Routine thrombus aspiration during PCI for STEMI did not reduce longer-term clinical outcomes and might be associated with an increase in stroke. As a result, thrombus aspiration can no longer be recommended as a routine strategy in STEMI. Funding Canadian Institutes of Health Research, Canadian Network and Centre for Trials Internationally, and Medtronic Inc.
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- 2016
80. PERMON software toolbox as solver of contact problems in mechanics
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Alena Vasatova, Martin Cermak, David Horák, Vaclav Hapla, Lukáš Pospíšil, and Alexandros Markopoulos
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Mathematical optimization ,Discretization ,business.industry ,Computation ,Linear elasticity ,Domain decomposition methods ,Solver ,Toolbox ,Computational science ,Software ,Computer Science::Mathematical Software ,Quadratic programming ,business ,Mathematics - Abstract
PERMON toolbox makes use of theoretical results in discretization techniques, quadratic programming algorithms, and domain decomposition methods. It is built on top of the PETSc framework for numerical computations. This paper describes its packages, and shows case of their application for a contact problem of linear elasticity decomposed by TFETI non-overlapping domain decomposition method. We end with the inequality constrained quadratic programming problems that can be solved by our PermonQP package with the PermonIneq extension.
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- 2016
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81. Energy consumption optimization of the Total-FETI solver and BLAS routines by changing the CPU frequency
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Radim Sojka, David Horák, Martin Beseda, Lubomir Riha, and Jakub Kruzik
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Computer science ,READEX project ,power aware computing ,Clock rate ,microprocessor chips ,02 engineering and technology ,Parallel computing ,01 natural sciences ,energy consumption ,0202 electrical engineering, electronic engineering, information engineering ,0101 mathematics ,field programmable gate arrays ,energy conservation ,Xeon ,CPU frequency ,Energy consumption ,Solver ,Supercomputer ,BLAS routines ,Total-FETI ,Matrix multiplication ,CPU tuning ,010101 applied mathematics ,Energy conservation ,TFETI ,020201 artificial intelligence & image processing ,PERMON toolbox ,Efficient energy use - Abstract
The energy consumption of supercomputers is one of the critical problems for the upcoming Exascale supercomputing era. The awareness of power an energy consumption is required on both software and hardware side. This poster deals with the energy consumption evaluation of the Total-Finite Element Tearing and Interconnect (TFETI) based solvers [2] of linear systems implemented in PERMON toolbox [1], which is an established method for solving real-world engineering problems, and with the energy consumption evaluation of the BLAS routines. The experiments performed in the poster deal with CPU frequency. This work is performed in the scope of the READEX project (Runtime Exploitation of Application Dynamism for Energy-efficient eXascale computing) [6]. The measurements were performed on the Intel Xeon E5-2680 (Intel Haswell micro-architecture) based Taurus system installed at TU Dresden. The system contains over 1400 nodes that have an FPGA-based power instrumentation called HDEEM (High Definition Energy Efficiency Monitoring), that allows for fine-grained and more accurate power and energy measurements. The measurements can be accessed through the HDEEM library, allowing developers to take energy measurements before and after the region of interest. We have evaluated the effect of the CPU frequency on the energy consumption of the TFETI solver for a linear elasticity 3D cube synthetic benchmark. On the dualized problem MPFX=MPd, we have evaluated the effect of frequency tuning on the energy consumption of the essential processing kernels of the TFETI method. There are two main phases in TFETI — preprocessing and solve. In preprocessing it is necessary to regularize the stiffness matrix K and factorize it and to assemble the G and GGT matrices and the second one to factorize. Both operations belong to the most time and also energy consuming operations. The solve employs the Preconditioned Conjugate Gradient (PCG) algorithm, which consists of sparse matrix-vector multiplications (by F, P, M L , M D matrices) and vector dot products and AXPY functions. In each iteration, we need to apply the direct solver twice, i.e., for forward and backward solves for the pseudoinverse K+ action and for the coarse problem solution, the (GGT)−1 action. The multiplication by the dense Schur complement matrix adds an additional operator with different computational characteristics, potentially increasing the exploitable dynamism. The poster provides results for two types of frequency tuning: (1) static tuning and (2) dynamic tuning. For static tuning experiments, the frequency is set before execution and kept constant during the runtime. For dynamic tuning, the frequency is changed during the program execution to adapt the system to the actual needs of the application. The poster shows that static tuning brings up 11.84% energy savings when compared to default CPU settings (the highest clock rate). The dynamic tuning improves this further by up to 2.68%. In total, the approach presented in this paper shows the potential to save up to 14.52% of energy for TFETI based solvers, see Table1. Another energy consumption evaluations were done with selected Sparse and Dense BLAS Level 1, 2 and 3 routines. For benchmarking we have used a set of matrices from University Florida collection [4]. We have employed AXPY, Sparse Matrix-Vector, Sparse MatrixMatrix, Dense Matrix-Vector, Dense Matrix-Matrix and Sparse Matrix-Dense Matrix multiplication routines from Intel Math Kernel Library (MKL) [3]. The measured characteristics illustrate the different energy consumption of BLAS routines, as some operations are memory-bounded and others are compute-bounded. Based on our recommendations one can explore dynamic frequency switching to achieve significant energy savings up to 23%, for more details see Table 2.
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- 2016
82. A scalable FETI-DP algorithm for a semi-coercive variational inequality
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Zdeněk Dostál, David Horák, and Dan Stefanica
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Mechanics of Materials ,Mechanical Engineering ,Computational Mechanics ,General Physics and Astronomy ,Computer Science Applications - Published
- 2007
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83. Highly Scalable Domain Decomposition Methods in Engineering Applications
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V. Vondrak, Z. Dostal, David Horák, and T. Kozubek
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Computer science ,Scalability ,Domain decomposition methods ,Computational science - Published
- 2015
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84. Long-Term Pulmonary Function in Survivors of Childhood Cancer
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Saro H. Armenian, Natt Supab, David Horák, George Mills, Claudia Herrera, Julie A. Wolfson, Liton Francisco, Aida Siyahian, Smita Bhatia, Wendy Landier, and Karla Wilson
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Adult ,Male ,Risk ,Cancer Research ,Pediatrics ,medicine.medical_specialty ,Adolescent ,Health Status ,Childhood cancer ,Pulmonary Dysfunction ,Odds ,Pulmonary function testing ,Quality of life ,Neoplasms ,medicine ,Odds Ratio ,Prevalence ,Humans ,Survivors ,Lung ,Radiotherapy ,business.industry ,Case-control study ,Cancer ,Radiotherapy Dosage ,Odds ratio ,ORIGINAL REPORTS ,Middle Aged ,medicine.disease ,Respiratory Function Tests ,Oncology ,Case-Control Studies ,Quality of Life ,Female ,business - Abstract
Purpose This study was undertaken to determine the magnitude of pulmonary dysfunction in childhood cancer survivors when compared with healthy controls and the extent (and predictors) of decline over time. Patients and Methods Survivors underwent baseline (t1) pulmonary function tests, followed by a second comprehensive evaluation (t2) after a median of 5 years (range, 1.0 to 10.3 years). Survivors were also compared with age- and sex-matched healthy controls at t2. Results Median age at cancer diagnosis was 16.5 years (range, 0.2 to 21.9 years), and time from diagnosis to t2 was 17.1 years (range, 6.3 to 40.1 years). Compared with odds for healthy controls, the odds of restrictive defects were increased 6.5-fold (odds ratio [OR], 6.5; 95% CI, 1.5 to 28.4; P < .01), and the odds of diffusion abnormalities were increased 5.2-fold (OR, 5.2; 95% CI, 1.8 to 15.5; P < .01). Among survivors, age younger than 16 years at diagnosis (OR, 3.0; 95% CI, 1.2 to 7.8; P = .02) and exposure to more than 20 Gy chest radiation (OR, 5.6; 95% CI, 1.5 to 21.0; P = .02, referent, no chest radiation) were associated with restrictive defects. Female sex (OR, 3.9; 95% CI, 1.7 to 9.5; P < .01) and chest radiation dose (referent: no chest radiation; ≤ 20 Gy: OR, 6.4; 95% CI, 1.7 to 24.4; P < .01; > 20 Gy: OR, 11.3; 95% CI, 2.6 to 49.5; P < .01) were associated with diffusion abnormalities. Among survivors with normal pulmonary function tests at t1, females and survivors treated with more than 20 Gy chest radiation demonstrated decline in diffusion function over time. Conclusion Childhood cancer survivors exposed to pulmonary-toxic therapy are significantly more likely to have restrictive and diffusion defects when compared with healthy controls. Diffusion capacity declines with time after exposure to pulmonary-toxic therapy, particularly among females and survivors treated with high-dose chest radiation. These individuals could benefit from subsequent monitoring.
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- 2015
85. Impact of diffusion-weighted MRI-measured initial cerebral infarction volume on clinical outcome in acute stroke patients with middle cerebral artery occlusion treated by thrombolysis
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Daniel Šaňák, Jana Zapletalová, Roman Herzig, David Horák, Ivanka Vlachová, Viera Cisariková, Vladimir Nosal, Jiří Bučil, Stanislav Buřval, Petr Kaňovský, Kamil Zeleňák, Martin Kocher, David Školoudík, Andrea Bártková, and Egon Kurča
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Cerebral infarction ,business.industry ,medicine.medical_treatment ,Infarction ,Infarction, Middle Cerebral Artery ,Thrombolysis ,Middle Aged ,medicine.disease ,Stroke ,Diffusion Magnetic Resonance Imaging ,Treatment Outcome ,Modified Rankin Scale ,medicine.artery ,Anesthesia ,Middle cerebral artery ,Occlusion ,medicine ,Humans ,Thrombolytic Therapy ,Radiology, Nuclear Medicine and imaging ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine ,business ,Neuroradiology - Abstract
Magnetic resonance imaging (MRI) may help identify acute stroke patients with a higher potential benefit from thrombolytic therapy. The aim of our study was to assess the correlation between initial cerebral infarct (CI) volume (quantified on diffusion-weighted MRI) and the resulting clinical outcome in acute stroke patients with middle cerebral artery (MCA) (M(1-2) segment) occlusion detected on MRI angiography treated by intravenous/intraarterial thrombolysis.Initial infarct volume (V(DWI-I) ) was retrospectively compared with neurological deficit evaluated using the NIH stroke scale on admission and 24 h later, and with the 90-day clinical outcome assessed using the modified Rankin scale in a series of 25 consecutive CI patients. The relationship between infarct volume and neurological deficit severity was assessed and, following the establishment of the maximum V(DWI-I) still associated with a good clinical outcome, the patients were divided into two groups (V(DWI-I)or =70 ml and70 ml).V(DWI-I) ranged from 0.7 to 321 ml. The 24-h clinical outcome improved significantly (P=0.0001) in 87% of patients with a V(DWI-I)or =70 ml (group 1) and deteriorated significantly (P=0.0018) in all patients with a V(DWI-I)70 ml (group 2). The 90-day mortality was 0% in group 1 and 71.5% in group 2. The 90-day clinical outcome was significantly better in group 1 than in group 2 (P=0.026).Clinical outcome could be predicted from initial infarct volume quantified by MRI-DWI in acute CI patients with MCA occlusion treated by intravenous/intraarterial thrombolysis. Patients with a V(DWI-I)or =70 ml had a significantly better outcome.
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- 2006
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86. Total FETI-an easier implementable variant of the FETI method for numerical solution of elliptic PDE
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Zdeněk Dostál, Radek Kučera, and David Horák
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Balancing domain decomposition method ,Applied Mathematics ,Mathematical analysis ,General Engineering ,Stiffness ,New variant ,Mathematics::Numerical Analysis ,symbols.namesake ,Computational Theory and Mathematics ,FETI ,Modeling and Simulation ,Dirichlet boundary condition ,Lagrange multiplier ,symbols ,medicine ,medicine.symptom ,Software ,Mortar methods ,Mathematics - Abstract
A new variant of the FETI method for numerical solution of elliptic PDE is presented. The basic idea is to simplify inversion of the stiffness matrices of subdomains by using Lagrange multipliers not only for gluing the subdomains along the auxiliary interfaces, but also for implementation of the Dirichlet boundary conditions. Results of numerical experiments are presented which indicate that the new method may be even more efficient then the original FETI.
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- 2006
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87. A scalable FETI-DP algorithm for a coercive variational inequality
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Zdeněk Dostál, Dan Stefanica, and David Horák
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Numerical Analysis ,Quadratically constrained quadratic program ,Mathematical optimization ,Applied Mathematics ,Domain decomposition methods ,FETI-DP ,Computational Mathematics ,Rate of convergence ,FETI ,Variational inequality ,Convex optimization ,Quadratic programming ,Algorithm ,Mathematics - Abstract
We develop an optimal algorithm for the numerical solution of coercive variational inequalities, by combining FETI algorithms of dual-primal type with recent results for bound constrained quadratic programming problems. The discretized version of the model problem, obtained by using the FETI-DP methodology, is reduced by the duality theory of convex optimization to a quadratic programming problem with bound constraints. The resulting problem is solved by a new algorithm with a known rate of convergence given in terms of the spectral condition number of the quadratic problem. We present convergence bounds that guarantee the scalability of the algorithm. These results are confirmed by numerical experiments.
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- 2005
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88. FETI based algorithms for contact problems: scalability, large displacements and 3D Coulomb friction
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Svatopluk Pták, Jiří Dobiáš, Jaroslav Haslinger, David Horák, Radek Kučera, Zdeněk Dostál, and Vít Vondrák
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Mathematical optimization ,Discretization ,Balancing domain decomposition method ,Augmented Lagrangian method ,Mechanical Engineering ,Computational Mechanics ,General Physics and Astronomy ,Domain decomposition methods ,Finite element method ,Computer Science Applications ,FETI ,Mechanics of Materials ,Convex optimization ,Quadratic programming ,Algorithm ,Mathematics - Abstract
Theoretical and experimental results concerning FETI based algorithms for contact problems of elasticity are reviewed. A discretized model problem is first reduced by the duality theory of convex optimization to the quadratic programming problem with bound and equality constraints. The latter is then optionally modified by means of orthogonal projectors to the natural coarse space introduced by Farhat and Roux in the framework of their FETI method. The resulting problem is then solved either by special algorithms for bound constrained quadratic programming problems combined with penalty that imposes the equality constraints, or by an augmented Lagrangian type algorithm with the inner loop for the solution of bound constrained quadratic programming problems. Recent theoretical results are reported that guarantee certain optimality and scalability of both algorithms. The results are confirmed by numerical experiments. The performance of the algorithm in solution of more realistic engineering problems by basic algorithm is demonstrated on the solution of 3D problems with large displacements or Coulomb friction.
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- 2005
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89. Probability of mortality of critically ill cancer patients at 72�h of intensive care unit (ICU) management
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David Horák, Susannah Kish Wallace, Kristen Price, Jeffrey S. Groeger, David Landsberg, Jill R. Glassman, and David M. Nierman
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Adult ,Male ,medicine.medical_specialty ,Resuscitation ,Time Factors ,Critical Illness ,Hospital mortality ,Logistic regression ,Severity of Illness Index ,law.invention ,law ,Neoplasms ,Critical care nursing ,Outcome Assessment, Health Care ,Humans ,Medicine ,Prospective Studies ,Intensive care medicine ,Aged ,Chi-Square Distribution ,business.industry ,Critically ill ,Nursing research ,Cancer ,Middle Aged ,medicine.disease ,Intensive care unit ,United States ,Intensive Care Units ,Logistic Models ,ROC Curve ,Oncology ,Female ,business - Abstract
To develop and validate a model for probability of hospital mortality for cancer patients at 72 h of intensive care unit (ICU) management.This is an inception cohort study performed at four ICUs of academic medical centers in the United States. Defined continuous and categorical variables were collected on consecutive patients with cancer admitted to the ICU. A preliminary model was developed from 827 patients and then validated on an additional 415 patients. Multiple logistic regression modeling was used to develop the models, which were subsequently evaluated for discrimination and calibration. The main outcome measure is in-hospital death.A probability of mortality model, which incorporates ten discrete categorical variables, was developed and validated. All variables were collected at 72 h of ICU care. Variables included evidence of disease progression, performance status before hospitalization, heart rate100 beats/min, Glasgow coma score/=5, mechanical ventilation, arterial oxygen pressure/fractional inspiratory oxygen ( PaO(2)/FiO(2)) ratio250, platelets100 k/ micro l, serum bicarbonate (HCO(3))20 mEq/l, blood urea nitrogen (BUN)40 mg/dl, and a urine output of150 ml for any 8 h in the previous 24 h. The p values for the fit of the preliminary and validation models were 0.535 and 0.354 respectively, and the areas under the receiver operating characteristic (ROC) curves were 0.809 and 0.820.We report a multivariable logistic regression model to estimate the probability of hospital mortality in critically ill cancer patients at 72 h of ICU care. The model is comprised of ten unambiguous and readily available variables. When used in conjunction with clinical judgment, this model should improve discussions about goals of care of these patients. Additional validation in a community hospital setting is warranted.
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- 2003
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90. Scalable FETI with optimal dual penalty for semicoercive variational inequalities
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Zdeněk Dostál and David Horák
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- 2003
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91. Total-FETI domain decomposition method for solution of elasto-plastic problems
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Alexandros Markopoulos, Michal Merta, David Horák, Martin Cermak, and Vaclav Hapla
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Discretization ,FETI ,Linearization ,General Engineering ,Applied mathematics ,von Mises yield criterion ,Geometry ,Domain decomposition methods ,Backward Euler method ,Software ,Displacement (vector) ,Finite element method ,Mathematics - Abstract
In this paper we present an algorithm for the parallel solution of the rate-independent elasto-plastic problems with kinematic hardening. We assume the von Mises plastic criterion and the associated plastic flow rule. The time discretization is based on the implicit Euler method. The corresponding one-time-step problem is formulated in the incremental form with respect to the unknown displacement and discretized spatially by the finite element method. We use an ‘external’ algorithm based on a linearization of the elasto-plastic stress–strain relation by the corresponding tangential operator and we parallelize the arising linearized problem by the Total-FETI method. The numerical experiments were carried out using our novel C/C++ library FLLOP (FETI Light Layer On top of PETSc) at HECToR supercomputer located at EPCC, UK. Web of Science 84 54 48
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- 2015
92. Stroke in the TOTAL trial: a randomized trial of routine thrombectomy vs. percutaneous coronary intervention alone in ST elevation myocardial infarction
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Peggy Gao, Robert G. Hart, John D. Schwalm, Nicholas Valettas, Hannu O. Romppanen, Aiman Alak, Salim Yusuf, Dimitrios Alexopoulos, Raul Moreno, Saleem Kassam, John A. Cairns, Anthony Fung, R. Leung, Brandi Meeks, David Horák, Goran Stankovic, Sanjit S. Jolly, Michael Rokoss, Sasko Kedev, Vladimír Džavík, Magdi El-Omar, and Ashraf Alazzoni
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Male ,medicine.medical_specialty ,medicine.medical_treatment ,Myocardial Infarction ,Kaplan-Meier Estimate ,law.invention ,STEMI ,Percutaneous Coronary Intervention ,Postoperative Complications ,Randomized controlled trial ,law ,St elevation myocardial infarction ,Internal medicine ,medicine ,Humans ,cardiovascular diseases ,FASTTrack Clinical Research ,Stroke ,Thrombectomy ,Aged ,business.industry ,Hazard ratio ,Percutaneous coronary intervention ,Odds ratio ,medicine.disease ,Confidence interval ,3. Good health ,Surgery ,Meta-analysis ,Treatment Outcome ,Cardiology ,Female ,Randomized trial ,Cardiology and Cardiovascular Medicine ,business - Abstract
Aims TOTAL ( N = 10 732), a randomized trial of routine manual thrombectomy vs. percutaneous coronary intervention alone in ST elevation myocardial infarction, showed no difference in the primary efficacy outcome but a significant increase in stroke. We sought to understand these findings. Methods and results A detailed analysis of stroke timing, stroke severity, and stroke subtype was performed. Strokes were adjudicated by neurologists blinded to treatment assignment. Stroke within 30 days, the primary safety outcome, was increased [33 (0.7%) vs. 16 (0.3%), hazard ratio (HR) 2.06; 95% confidence interval (CI) 1.13–3.75]. The difference in stroke was apparent within 48 h [15 (0.3%) vs. 5 (0.1%), HR 3.00; 95% CI 1.09–8.25]. There was an increase in strokes within 180 days with minor or no disability (Rankin 0–2) [18 (0.4%) vs. 13 (0.3%) HR 1.38; 95% CI 0.68–2.82] and in strokes with major disability or fatal (Rankin 3–6) [35 (0.7%) vs. 13 (0.3%), HR 2.69; 95% CI 1.42–5.08]. Most of the absolute difference was due to an increase in ischaemic strokes within 180 days [37 (0.7%) vs. 21 (0.4%), HR 1.71; 95% CI 1.03–3.00], but there was also an increase in haemorrhagic strokes [10 (0.2%) vs. 2 (0.04%), HR 4.98; 95% CI 1.09–22.7]. Patients that had a stroke had a mortality of 30.8% within 180 days vs. 3.4% without a stroke ( P < 0.001). A meta-analysis of randomized trials ( N = 21 173) showed an increase in risk of stroke (odds ratio 1.59; 95% CI 1.11–2.27) but a trend towards reduction in mortality odds ratio (odds ratio 0.87; 95% CI 0.76–1.00). Conclusion Thrombectomy was associated with a significant increase in stroke. Based on these findings, future trials must carefully collect stroke to determine safety in addition to efficacy.
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- 2015
93. The advance directive completion rates in the hematopoietic stem cell transplant population in a major transplant cancer center
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Joseph C. Alvarnas, Lindsay Emanuel, Bernard Tegtmeier, Leslie Popplewell, Chandana Banerjee, Purvi Patel, Stephen J. Forman, Sorin Buga, Judy Wong-Toh, David Horák, Stefanie Mooney, Gayle Ito-Hamerling, William Dale, Finly Zachariah, Gerardo Gorospe, Priscilla Ohanesian, Denise Morse, Dicran Kassouny, and Nellie Garcia
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Advance care planning ,Cancer Research ,medicine.medical_specialty ,education.field_of_study ,business.industry ,05 social sciences ,Population ,Hematopoietic stem cell ,Cancer ,030204 cardiovascular system & hematology ,medicine.disease ,Directive ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Oncology ,0502 economics and business ,Medicine ,050211 marketing ,Center (algebra and category theory) ,business ,Intensive care medicine ,education - Abstract
16 Background: Advance Care Planning (ACP) is central to patient-centered care and helps assure treatment aligns with a patient’s goals, values, and priorities. ACP is often poorly incorporated into the hematopoietic stem cell transplantation (HSCT) population, with reported advance directive (AD) rates of 23-50%. At City of Hope National Medical Center (COH), concerted efforts to improve the overall number of ADs in HSCT was undertaken and evaluated. Methods: The Department of Supportive Care Medicine at COH, in collaboration with medical faculty and administrative support, created a patient-centered ACP program. The first two years (2013/2014) broadly focused on all new COH patients. The last two years (2015/2016) included a specific focus on patients undergoing HSCT. The primary goal was a completed AD in the electronic medical record before day 0 of transplant. In addition to provider and transplant team engagement, major time points for supportive care integration to facilitate AD completion were identified including: 1) registration, 2) new patient orientation, 3) the clinical visit when transplant was decided, 4) pre-transplant education class, 5) clinical social work psychosocial assessment visit, and 6) the pre-transplant hospital days. AD completion rates were calculated with Odds Ratio and Mantel-Haenszel Chi-Square using Epi Info StatCalc. Results: Between 2012 and 2016 at COH, 1784 transplants were performed. For HSCT patients in 2012, baseline AD capture rate before day 0 of transplant was 28.6%. With the institutional AD program, the AD capture rate before day 0 of transplant was 31.6% for 2014, compared with 2012 [odds ratio, 1.17(95% CI, 0.85-1.60); p = .33]. With both institutional and hematology specific programs, AD capture rate before day 0 was 69.5% for 2016, compared to 2014[odds ratio, 4.30 (95% CI, 3.14-5.91); p < .001]. Conclusions: Compared to 2012, the institutional AD program in 2014 insignificantly impacted HSCT AD completion rates. Improving the rate of AD completion from 28.6% to 69.5% in HSCT patients required both institutional AD efforts and a targeted program. Nevertheless, more work is needed to improve AD completion rates before transplant to 100%.
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- 2017
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94. FLLOP: A Massively Parallel Solver Combining FETI Domain Decomposition Method and Quadratic Programming
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Alexandros Markopoulos, Martin Cermak, David Horák, and Vaclav Hapla
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Theoretical computer science ,Computer science ,Linear system ,Domain decomposition methods ,Parallel computing ,Solver ,computer.software_genre ,Finite element method ,Matrix decomposition ,Software framework ,FETI ,Robustness (computer science) ,Quadratic programming ,Massively parallel ,computer ,Numerical partial differential equations - Abstract
FLLOP (FETI Light Layer On top of PETSc) is a novel solver for linear systems and more general quadratic programming problems. It connects quadratic programming algorithms with FETI domain decomposition methods that bring high parallel scalability and at the same time high accuracy and robustness needed in engineering applications. According to its name, FLLOP forms an extension of the renowned PETSc software framework for parallel numerical solution of partial differential equations. It can be thus adopted by PETSc users with relative ease. The above-mentioned facts makes FLLOP a unique project. It now forms a solver part of our emerging PERMON toolbox for Parallel, Efficient, Robust, Modular, Object-oriented, Numerical simulations. We introduce one more PERMON tool, Permon Cube, which serves as a benchmark generation tool for FLLOP in massively parallel environment.
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- 2014
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95. CRITICAL CARE OF THE HEMATOPOIETIC STEM CELL PATIENT
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Stephen J. Forman and David Horák
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Lung Diseases ,medicine.medical_specialty ,Critical Care ,medicine.medical_treatment ,Intensivist ,Hemorrhage ,Hematopoietic stem cell transplantation ,Critical Care and Intensive Care Medicine ,Postoperative Complications ,hemic and lymphatic diseases ,Intensive care ,medicine ,Humans ,Aplastic anemia ,Intensive care medicine ,Nutritional Support ,business.industry ,Hematopoietic Stem Cell Transplantation ,General Medicine ,medicine.disease ,Pancytopenia ,Systemic inflammatory response syndrome ,Transplantation ,Pneumonia ,Mycoses ,Virus Diseases ,Nervous System Diseases ,business ,Liver Failure - Abstract
Although the beginnings of bone marrow transplantation (BMT) date back to 1939 with a case report of intravenous infusion of 18 cm3 of bone marrow from a sibling into a patient with aplastic anemia, 4, 12 modern BMT was pioneered by the Nobel Prize winner E. Donnell Thomas and his fellow investigators who performed the first successful allogeneic BMTs in the late 1960s and early 1970s. Since the last review of critical care complications of BMT in the January, 1988, issue of Critical Care Clinics by Joel Brochstein, MD, 10 significant strides have been made in basic research and clinical trials, with exponential growth in the numbers of BMTs performed in the 1980s and 1990s.39 Bone marrow is no longer the sole source of allogeneic and autologous hematopoietic cells; peripheral blood stem cell collections and umbilical cord blood are used increasingly, so the preferred term used in the literature is hematopoietic stem cell transplantation (HCT). Worldwide, an estimated 40, 000 transplantations are performed annually. The list of potential disease states amemable to HCT, displayed in the box, continues to expand.39 MalignanciesNonmalignant DiseasesLeukemia/preleukemiaSevere aplastic anemia Chronic myeloid leukemiaParoxysmal nocturnal hemoglobinuria Acute myeloid leukemia Acute lymphoblastic leukemiaHemoglobinopathies Juvenile chronic myeloid leukemiaThalassemia majorSickle cell disease Myelodysplastic syndromesCongenital disorders of hematopoiesis Therapy-related myelodysplasia/leukemiaFanconi's anemia Chronic lymphocytic leukemiaDiamond-Blackfan syndromeNon-Hodgkin's and Hodgkin's lymphomaKostmann's agranulocytosisFamilial erythrophagocytic histiocytosisMultiple myelomaSolid tumorsDyskeratosis congenita Breast cancerShwachman-Diamond syndrome Testicular cancerSevere combined immunodeficiency and related disorders Ovarian cancer Small cell lung cancerWiskott-Aldrich syndrome NeuroblastomaInborn errors of metabolism As the number of HCT patients has increased, so has the need for intensive care of the life-threatening complications associated with this high-risk procedure. The ICU use rates in HCT are estimated to range from 7% to 40%, depending on the type of transplant and risk factors such as age, conditioning regimen, and underlying disease.20 At the City of Hope National Medical Center (COHNMC), HCT patients with critical care complications are transferred to a 12-bed combined medical/surgical ICU, whereas at other institutions critically ill patients are managed on the transplantation ward.74 The COHNMC uses a multidisciplinary team approach to management of the critically ill HCT patient, with team leadership provided by the primary hematologist/oncologist and the adult or pediatric pulmonary intensivist and with input from a variety of other medical and surgical subspecialists as appropriate, including gastroenterologists, nephrologists, infectious diseases specialists, transfusion medicine specialists, psychiatrists, general surgeons, thoracic surgeons, neurosurgeons, and otolaryngologists. Bedside rounds are made daily in the ICU with input by physicians and nursing, respiratory therapy, dietary, pharmacy, social services, pastoral care, and physical therapy personnel. Several studies have suggested that transitioning from an open to a closed ICU with stricter administrative and triage control by an intensivist leads to more efficient use, shorter length of stay, decreased number of days of mechanical ventilation, lower costs, and improved outcome.29, 63, 70 At COHNMC and at many cancer centers, however, the team approach has proved to be most effective in the complex management of critically ill HCT patients. Many critical care complications in HCT patients are the same as those that occur in other immunocompromised patients, including sepsis, systemic inflammatory response syndrome (SIRS), multiorgan dysfunction syndrome (MODS), opportunistic infection, drug toxicity, hemorrhage, and so forth. This article focuses on the critical care problems occurring more specifically in the HCT patient, including infection, specific-organ toxicities, graft-versus-host disease (GvHD), and regimen-related toxicity (RRT). Previous reviewers have pointed out that complications following HCT tend to follow a fairly predictable timetable related to the evolution of immunologic changes attributable to the chemoradiation conditioning regimen, with an interval of pancytopenia preceding engraftment.15, 20, 50, 99, 107 This timetable, as shown in the box, is sometimes useful in narrowing the differential diagnosis, especially in pulmonary complications occurring after HCT.109a Traditionally, complications are grouped as early (occurring within 100 days after HCT) or late (occurring more than 100 days after HCT). Most early complications are related to the chemoradiation myeloablative therapy (regimen-related toxicity, or RRT) and to bacterial, fungal, and herpes simplex virus (HSV) infections. Once engraftment occurs and the white blood cell count starts to rise (approximately day 15 to 20 after HCT, the middle period), the incidence of bacterial infection begins to decrease and the risk for Aspergillus (with a second peak occurring between days 60 and 80 after HCT), and Cytomegalovirus (CMV) interstitial pneumonitis increases. Because of significant overlap of complications occurring in the early, middle and late periods, more specific diagnostic testing almost always is required to determine specific diagnosis and appropriate therapy. Technologic advancements during the past decade in imaging, hemodynamic assessment, and more sensitive culture techniques have facilitated the diagnosis of pulmonary complications, although the precise cause of many complications often remains obscure, and treatment is often empiric and supportive. Early(>30 days) InfectiousMiddle(30 to 100 days) Interstitial pneumonitisLate(>100 days) InfectiousBacterialCytomegalovirusBacteriaFungal (Candida, Aspergillus)Human herpes virus 6Filamentous fungi (Aspergillus and others)Viruses (non-Cytomegalovirus)Idiopathic pneumonia syndromeNocardiaAspirationVirusesMycobacteriaPneumocystis carinii pneumonia Pulmonary edemaInfectiousGvHD-associated phenomenaCardiac dysfunctionPneumocystis carinii pneumoniaObstructive airways diseaseHypervolemiaAtypical bacteriaBronchiolitis obliteransCapillary leakAspergillusVeno-occlusive disease Idiopathic pneumonia syndromeIdiopathic pneumonia syndromeRelapsed disease Diffuse alveolar hemorrhageDiffuse alveolar hemorrhageGvHD=graft-versus-host disease
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- 2001
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96. Indications for ICD implantation in the primary prevention of sudden cardiac death after a STEMI. The impact of a change in the Czech Society of Cardiology guidelines on the number of patients scheduled for the procedure
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Klára Skoupá, Rostislav Polášek, David Horák, Pavel Nedbal, Jana Hanuliaková, Lukáš Jaworski, and Pavel Kucera
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medicine.medical_specialty ,business.industry ,Primary prevention ,Internal medicine ,medicine ,Cardiology ,Cardiology and Cardiovascular Medicine ,business ,medicine.disease ,Sudden cardiac death ,Icd implantation - Abstract
Cil: Porovnat pocet pacientů indikovaných k implantaci ICD v primarni prevenci nahle srdecni smrti podle starých (2005) a nových (2009) doporuceni Ceske kardiologicke spolecnosti (CKS) u pacientů po prodělanem infarktu myokardu s elevacemi useku ST.Metodika a výsledky: Vysetřili jsme 205 konsekutivnich pacientů 12-29 měsiců po prodělanem infarktu myokardu s elevacemi useku ST. Odebrali jsme anamnezu a provedli echokardiograficke a EKG vysetřeni, neprovaděli jsme elektrofyziologicke vysetřeni. Na zakladě výsledků těchto vysetřeni jsme hodnotili indikaci k implantaci implantabilniho kardioverteru-defibrilatoru (ICD) v primarni prevenci nahle srdecni smrti podle starých a nových doporuceni CKS. V obdobi od prosince 2006 do prosince 2007 bylo na nasem pracovisti hospitalizovano celkem 310 pacientů pro infarkt myokardu s elevacemi useku ST. Nemocnicni mortalita dosahovala 5,2 %, po propustěni z nemocnice a před planovaným vysetřenim zemřelo 2,7 % pacientů. Ostatni pacienti byli pozvani k vysetřeni, 81 z nich se vsak nedostavilo. Z vysetřených nemocných byli ctyři indikovani k implantaci ICD podle starých doporuceni a 25 bylo indikovano podle nových doporuceni. Když jsme vzali v uvahu vsechny pacienty přijate pro infarkt myokardu s elevacemi useku ST (STEMI), zjistili jsme, že 1,3-1,8 %, resp. 8,1-11,3 % je indikovano k implantaci ICD v primarni prevenci.Zavěr: V populaci pacientů s ICHS po prodělanem STEMI jsme s implementaci nových doporuceni (2009) CKS zjistili sestinasobný narůst indikaci k implantaci ICD v primarni prevenci nahle srdecni smrti.
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- 2010
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97. Thyroid Abscess as a Complication of Fine-Needle Aspiration Biopsy
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Zdenek Frysak, Ladislava Kucerova, Milan Halenka, David Karasek, Irena Skodova, and David Horák Ph.D
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endocrine system ,medicine.medical_specialty ,endocrine system diseases ,medicine.diagnostic_test ,business.industry ,Endocrinology, Diabetes and Metabolism ,Thyroid ,Clinical course ,bacterial infections and mycoses ,medicine.disease ,medicine.anatomical_structure ,Fine-needle aspiration ,Aspiration biopsy ,Biopsy ,Medicine ,Radiology ,business ,Complication ,Abscess ,Infectious agent - Abstract
Thyroid abscess is a rare condition with a dramatic clinical course. Most commonly, thyroid abscess develops in a multinodular goiter. Rarely, the infection is iatrogenic. This report describes an abscess developing after fine-needle aspiration biopsy. The infectious agent was Escherichia c
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- 2008
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98. Editorial: Biodiversity across Afromontane environments
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David Hořák, Vincent Ralph Clark, Kevin Y. Njabo, and Jon Fjeldså
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forest ,grassland ,savanna ,plants ,animals ,endemism ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Published
- 2023
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99. Multicenter outcome study of cancer patients admitted to the intensive care unit: a probability of mortality model
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Janelle Klar, David Horák, Svetlana Granovsky, Jeffrey S. Groeger, Kristen Price, Stanley Lemeshow, David M. Nierman, Peter T. White, and Susannah K. Kish
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Adult ,Cancer Research ,medicine.medical_specialty ,Pediatrics ,Multivariate analysis ,Logistic regression ,law.invention ,law ,Neoplasms ,Humans ,Medicine ,Hospital Mortality ,Prospective Studies ,Prospective cohort study ,Categorical variable ,Academic Medical Centers ,Models, Statistical ,Receiver operating characteristic ,business.industry ,Regression analysis ,Middle Aged ,Intensive care unit ,Intensive Care Units ,Logistic Models ,Blood pressure ,ROC Curve ,Oncology ,Multivariate Analysis ,Emergency medicine ,business - Abstract
PURPOSE To develop prospectively and validate a model for probability of hospital survival at admission to the intensive care unit (ICU) of patients with malignancy. PATIENTS AND METHODS This was an inception cohort study in the setting of four ICUs of academic medical centers in the United States. Defined continuous and categorical variables were collected on consecutive patients with cancer admitted to the ICU. A preliminary model was developed from 1,483 patients and then validated on an additional 230 patients. Multiple logistic regression modeling was used to develop the models and subsequently evaluated by goodness-of-fit and receiver operating characteristic (ROC) analysis. The main outcome measure was hospital survival after ICU admission. RESULTS The observed hospital mortality rate was 42%. Continuous variables used in the ICU admission model are PaO2/FiO2 ratio, platelet count, respiratory rate, systolic blood pressure, and days of hospitalization pre-ICU. Categorical entries include presence of intracranial mass effect, allogeneic bone marrow transplantation, recurrent or progressive cancer, albumin less than 2.5 g/dL, bilirubin > or = 2 mg/dL, Glasgow Coma Score less than 6, prothrombin time greater than 15 seconds, blood urea nitrogen (BUN) greater than 50 mg/dL, intubation, performance status before hospitalization, and cardiopulmonary resuscitation (CPR). The P values for the fit of the preliminary and validation models are .939 and .314, respectively, and the areas under the ROC curves are .812 and .802. CONCLUSION We report a disease-specific multivariable logistic regression model to estimate the probability of hospital mortality in a cohort of critically ill cancer patients admitted to the ICU. The model consists of 16 unambiguous and readily available variables. This model should move the discussion regarding appropriate use of ICU resources forward. Additional validation in a community hospital setting is warranted.
- Published
- 1998
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100. Parallel Implementation of Total-FETI DDM with Application to Medical Image Registration
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Alena Vasatova, Michal Merta, David Horák, and Vaclav Hapla
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Computer science ,Structural mechanics ,Image registration ,Stiffness ,Finite element method ,Mathematics::Numerical Analysis ,symbols.namesake ,FETI ,Elliptic partial differential equation ,Dirichlet boundary condition ,Lagrange multiplier ,symbols ,medicine ,medicine.symptom ,Algorithm - Abstract
The FETI (Finite Element Tearing and Interconnecting) method turned out to be one of the most successful methods for the parallel solution of elliptic partial differential equations. Total-FETI (TFETI) by Dostal et al. simplifes the inversion of stiffness matrices of subdomains by using Lagrange multipliers not only for gluing the subdomains along the auxiliary interfaces, but also to enforce the Dirichlet boundary conditions. Thus, bases of kernels of all subdomain stiffness matrices are known a priori and can be assembled directly from mesh data.Although usual applications of TFETI method lie in the field of material sciences and structural mechanics, we demonstrate its applicability to the problem of the image registration of computer tomography imaging data using elastic registration method.
- Published
- 2014
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