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In the surface waters of the warm oligotrophic ocean, filaments and aggregated colonies of the nitrogen (N)-fixing cyanobacterium Trichodesmium create microscale nutrient-rich oases. These hotspots fuel primary productivity and harbour a diverse consortium of heterotrophs. Interactions with associated microbiota can affect the physiology of Trichodesmium, often in ways that have been predicted to support its growth. Recently, it was found that trimethylamine (TMA), a globally abundant organic N compound, inhibits N2 fixation in cultures of Trichodesmium without impairing growth rate, suggesting that Trichodesmium can use TMA as an alternate N source. In this study, 15 N-TMA DNA stable isotope probing (SIP) of a Trichodesmium enrichment was employed to further investigate TMA metabolism and determine whether TMA-N is incorporated directly or secondarily via cross-feeding facilitated by microbial associates. Herein, we identify two members of the marine Roseobacter clade (MRC) of Alphaproteobacteria as the likely metabolizers of TMA and provide genomic evidence that they converted TMA into a more readily available form of N, e.g., ammonium (NH4+ ), which was subsequently used by Trichodesmium and the rest of the community. The results implicate microbiome-mediated carbon (C) and N transformations in modulating N2 fixation and thus highlight the involvement of host-associated heterotrophs in global biogeochemical cycling.

Metamaterials exhibiting Fabry–Pérot resonances are shown to achieve ultrasonic imaging of a sub-wavelength aperture in water immersion across a broad bandwidth. Holey-structured metamaterials of different thickness were additively manufactured using a tungsten substrate and selective laser melting, tungsten being chosen so as to create a significant acoustic impedance mismatch with water. Both broadband metamaterial behavior and sub-wavelength imaging in water are demonstrated experimentally and validated with finite element simulations over the 200–300 kHz range.

Significance Phytoplankton contribute to the Southern Ocean’s (SO) ability to absorb atmospheric CO2 and shape the stoichiometry of northward macronutrient delivery. Climate change is altering the SO environment, yet we know little about how resident phytoplankton will react to these changes. Here, we studied a natural SO community and compared responses of two prevalent, bloom-forming diatom groups to changes in temperature and iron that are projected to occur by 2100 to 2300. We found that one group, Pseudo-nitzschia, grows better under warmer low-iron conditions by managing cellular iron demand and efficiently increasing photosynthetic capacity. This ability to grow and draw down nutrients in the face of warming, regardless of iron availability, has major implications for ocean ecosystems and global nutrient cycles., The Southern Ocean (SO) harbors some of the most intense phytoplankton blooms on Earth. Changes in temperature and iron availability are expected to alter the intensity of SO phytoplankton blooms, but little is known about how these changes will influence community composition and downstream biogeochemical processes. We performed light-saturated experimental manipulations on surface ocean microbial communities from McMurdo Sound in the Ross Sea to examine the effects of increased iron availability (+2 nM) and warming (+3 and +6 °C) on nutrient uptake, as well as the growth and transcriptional responses of two dominant diatoms, Fragilariopsis and Pseudo-nitzschia. We found that community nutrient uptake and primary productivity were elevated under both warming conditions without iron addition (relative to ambient −0.5 °C). This effect was greater than additive under concurrent iron addition and warming. Pseudo-nitzschia became more abundant under warming without added iron (especially at 6 °C), while Fragilariopsis only became more abundant under warming in the iron-added treatments. We attribute the apparent advantage Pseudo-nitzschia shows under warming to up-regulation of iron-conserving photosynthetic processes, utilization of iron-economic nitrogen assimilation mechanisms, and increased iron uptake and storage. These data identify important molecular and physiological differences between dominant diatom groups and add to the growing body of evidence for Pseudo-nitzschia’s increasingly important role in warming SO ecosystems. This study also suggests that temperature-driven shifts in SO phytoplankton assemblages may increase utilization of the vast pool of excess nutrients in iron-limited SO surface waters and thereby influence global nutrient distribution and carbon cycling.

The keystone marine nitrogen fixer Trichodesmium thrives in high-dust environments. While laboratory investigations have observed that Trichodesmium colonies can access the essential nutrient iron from dust particles, less clear are the biochemical strategies underlying particle–colony interactions in nature. Here we demonstrate that Trichodesmium colonies engage with mineral particles in the wild with distinct molecular responses. We encountered particle-laden Trichodesmium colonies at a sampling location in the Southern Caribbean Sea; microscopy and synchrotron-based imaging then demonstrated heterogeneous associations with iron oxide and iron-silicate minerals. Metaproteomic analysis of individual colonies by a new low-biomass approach revealed responses in biogeochemically relevant proteins including photosynthesis proteins and metalloproteins containing iron, nickel, copper, and zinc. The iron-storage protein ferritin was particularly enriched implying accumulation of mineral-derived iron, and multiple iron acquisition pathways including Fe(II), Fe(III), and Fe-siderophore transporters were engaged. While the particles provided key trace metals such as iron and nickel, there was also evidence that Trichodesmium was altering its strategy to confront increased superoxide production and metal exposure. Chemotaxis regulators also responded to mineral presence suggesting involvement in particle entrainment. These molecular responses are fundamental to Trichodesmium’s ecological success and global biogeochemical impact, and may contribute to the leaching of particulate trace metals with implications for global iron and carbon cycling.

Global warming will be combined with predicted increases in thermal variability in the future surface ocean, but how temperature dynamics will affect phytoplankton biology and biogeochemistry is largely unknown. Here, we examine the responses of the globally important marine coccolithophore Emiliania huxleyi to thermal variations at two frequencies (one-day and two-day) at low (18.5 °C) and high (25.5 °C) mean temperatures. Elevated temperature and thermal variation decreased growth, calcification and physiological rates, both individually and interactively. One-day thermal variation frequencies were less inhibitory than two-day variations under high temperature, indicating that high frequency thermal fluctuations may reduce heat‐induced mortality and mitigate some impacts of extreme high temperature events. Cellular elemental composition and calcification was significantly affected by both thermal variation treatments relative to each other, and to the constant temperature controls. The negative effects of thermal variation on E. huxleyi growth rate and physiology are especially pronounced at high temperatures. These responses of the key marine calcifier E. huxleyi to warmer, more variable temperature regimes have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.

Continuous accumulation of fossil CO2 in the atmosphere and increasingly dissolved CO2 in seawater leads to ocean acidification (OA), which is known to affect phytoplankton physiology directly and/or indirectly. Since increasing attention has been paid to the effects of OA under the influences of multiple drivers, in this study, we investigated effects of elevated CO2 concentration under different levels of light and nutrients on growth rate, particulate organic (POC) and inorganic (PIC) carbon quotas of the coccolithophorid Emiliania huxleyi. We found that OA treatment (pH 7.84, CO2 = 920 μatm) reduced the maximum growth rate at all levels of the nutrients tested, and exacerbated photo-inhibition of growth rate under reduced availability of phosphate (from 10.5 to 0.4 μmol l−1). Low nutrient levels, especially lower nitrate concentration (8.8 μmol l−1 compared with 101 μmol l−1), decreased maximum growth rates. Nevertheless, the reduced levels of nutrients increased the maximum PIC production rate. Decreased availability of nutrients influenced growth, POC and PIC quotas more than changes in CO2 concentrations. Our results suggest that reduced nutrient availability due to reduced upward advective supply because of ocean warming may partially counteract the negative effects of OA on calcification of the coccolithophorid.

The signs of climate change are undeniable, and the inevitable impact for Earth and all its inhabitants is a serious concern. Ice is melting, sea levels are rising, biodiversity is declining, precipitation has increased, atmospheric levels of carbon dioxide and greenhouse gases are alarmingly high, and extreme weather conditions are becoming increasingly common. But what role do microorganisms have in this global challenge? In this Viewpoint article, several experts in the field discuss the microbial contributions to climate change and consider the effects of global warming, extreme weather, flooding and other consequences of climate change on microbial communities in the ocean and soil, on host-microbiota interactions and on the global burden of infectious diseases and ecosystem processes, and they explore open questions and research needs.

Background A broad literature base exists for measuring medication adherence to monotherapeutic regimens, but publications are less extensive for measuring adherence to multiple medications. Objectives To identify and characterize the multiple medication adherence (MMA) methods used in the literature. Methods A literature search was conducted using PubMed, PsycINFO, the International Pharmaceutical Abstracts, the Cumulative Index to Nursing and Allied Health Literature and the Cochrane Library databases on methods used to measure MMA published between January 1973 and May 2015. A two-step screening process was used; all abstracts were screened by pairs of researchers independently, followed by a full-text review identifying the method for calculating MMA. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines were followed to conduct this systematic review. For studies that met the eligibility criteria, general study and adherence-specific characteristics and the number and type of MMA measurement methods were summarized. Results The 147 studies that were included originated from 32 countries, in 13 disease states. Of these studies, 26 used proportion of days covered, 23 used medication possession ratio, and 72 used self-reported questionnaires (e.g., the Morisky Scale) to assess MMA. About 50% of the studies included more than one method for measuring MMA, and different variations of medication possession ratio and proportion of days covered were used for measuring MMA. Conclusions There appears to be no standardized method to measure MMA. With an increasing prevalence of polypharmacy, more efforts should be directed toward constructing robust measures suitable to evaluate adherence to complex regimens. Future research to understand the validity and reliability of MMA measures and their effects on objective clinical outcomes is also needed.

Marine phytoplankton such as bloom-forming, calcite-producing coccolithophores, are naturally exposed to solar ultraviolet radiation (UVR, 280–400 nm) in the ocean's upper mixed layers. Nevertheless, the effects of increasing carbon dioxide (CO2)-induced ocean acidification and warming have rarely been investigated in the presence of UVR. We examined calcification and photosynthetic carbon fixation performance in the most cosmopolitan coccolithophorid, Emiliania huxleyi, grown under high (1000 µatm, HC; pHT: 7.70) and low (400 µatm, LC; pHT: 8.02) CO2 levels, at 15 ∘C, 20 ∘C and 24 ∘C with or without UVR. The HC treatment did not affect photosynthetic carbon fixation at 15 ∘C, but significantly enhanced it with increasing temperature. Exposure to UVR inhibited photosynthesis, with higher inhibition by UVA (320–395 nm) than UVB (295–320 nm), except in the HC and 24 ∘C-grown cells, in which UVB caused more inhibition than UVA. A reduced thickness of the coccolith layer in the HC-grown cells appeared to be responsible for the UV-induced inhibition, and an increased repair rate of UVA-derived damage in the HC–high-temperature grown cells could be responsible for lowered UVA-induced inhibition. While calcification was reduced with elevated CO2 concentration, exposure to UVB or UVA affected the process differentially, with the former inhibiting it and the latter enhancing it. UVA-induced stimulation of calcification was higher in the HC-grown cells at 15 and 20 ∘C, whereas at 24 ∘C observed enhancement was not significant. The calcification to photosynthesis ratio (Cal ∕ Pho ratio) was lower in the HC treatment, and increasing temperature also lowered the value. However, at 20 and 24 ∘C, exposure to UVR significantly increased the Cal ∕ Pho ratio, especially in HC-grown cells, by up to 100 %. This implies that UVR can counteract the negative effects of the “greenhouse” treatment on the Cal ∕ Pho ratio; hence, UVR may be a key stressor when considering the impacts of future greenhouse conditions on E. huxleyi.

Ocean microbial communities are important contributors to the global biogeochemical reactions that sustain life on Earth. The factors controlling these communities are being increasingly explored through the use of metatranscriptomic and metaproteomic environmental biomarkers, despite ongoing uncertainty about the coherence between RNA and protein signals. Using published proteomes and transcriptomes from the abundant colony-forming cyanobacteriumTrichodesmium(strainT. erythraeumIMS101) grown under varying Fe and/or P limitation and/or co-limitation in low and high CO2, we observed robust correlations of stress induced proteins and RNAs (i.e., those involved in transport and homeostasis) that can yield useful information on nutrient status under low and/or high CO2. Conversely, transcriptional and translational correlations of many other central metabolism pathways exhibit broad discordance. A cellular RNA and protein production/degradation model demonstrates how biomolecules with small initial inventories, such as environmentally responsive proteins, can achieve large increases in fold-change units, as opposed to those with higher basal expression and inventory such as metabolic systems. Microbial cells, due to their close proximity to the environment, tend to show large adaptive responses to environmental stimuli in both RNA and protein that result in transcript-protein correlations. These observations and model results demonstrate a multi-omic coherence for environmental biomarkers and provide the underlying mechanism for those observations, supporting the promise for global application in detecting responses to environmental stimuli in a changing ocean.

Understanding the environmental conditions that trigger Pseudo-nitzschia bloom formation and domoic acid (DA) production is critical as the frequency and severity of these toxic blooms increases in the face of anthropogenic change. However, predicting the formation of these harmful blooms in a future ocean remains a challenge. Previous studies have examined the effects of single environmental drivers on Pseudo-nitzschia spp. growth and toxin production, but few have considered the interactions between them. In this multiple driver study with Pseudo-nitzschia multiseries, we used a full factorial matrix experimental design to examine the simultaneous effects of temperature (20 and 25°C), nitrogen source (nitrate and urea), and irradiance (photosynthetically active radiation with and without ultraviolet B radiation; UVB). This strain of P. multiseries was unable to withstand prolonged exposures (>0.5 h) to 0.06 mw⋅cm–2 UVB light, with implications for near-surface bloom formation if future shallower mixed layers increase UVB exposure. Growth rates were inhibited by UVB, but photosynthesis and carbon fixation continued at a reduced capacity. Additionally, DA synthesis continued despite UVB-induced growth inhibition. Warming by 5°C enhanced cellular DA quotas three-fold. Within these warmer treatments, urea-grown cultures exposed to UVB had the highest amount of DA per cell, suggesting that interactive effects between UVB exposure, warming, and urea can synergistically enhance toxin production. However, overall production of toxic biomass was low, as growth-integrated DA production rates were near zero. This indicates that although Pseudo-nitzschia multiseries cell-specific toxicity could worsen in an anthropogenically-altered future ocean, bloom formation may be inhibited by increased exposure to UVB. This multi-variable experimental approach revealed previously unknown interactions that could not have been predicted based on combined effects of single-variable experiments. Although P. multiseries DA production may be enhanced in a future ocean, inherent sensitivity to prolonged UVB exposure may moderate trophic transfer of toxin to coastal food webs.

A widely used method is found to overestimate organic pollution in natural waters, and an alternative method is proposed., Microbial degradation of dissolved organic carbon (DOC) in aquatic environments can cause oxygen depletion, water acidification, and CO2 emissions. These problems are caused by labile DOC (LDOC) and not refractory DOC (RDOC) that resists degradation and is thus a carbon sink. For nearly a century, chemical oxygen demand (COD) has been widely used for assessment of organic pollution in aquatic systems. Here, we show through a multicountry survey and experimental studies that COD is not an appropriate proxy of microbial degradability of organic matter because it oxidizes both LDOC and RDOC, and the latter contributes up to 90% of DOC in high-latitude forested areas. Hence, COD measurements do not provide appropriate scientific information on organic pollution in natural waters and can mislead environmental policies. We propose the replacement of the COD method with an optode-based biological oxygen demand method to accurately and efficiently assess organic pollution in natural aquatic environments.

Many marine organisms are exposed to decreasing O2 levels due to warming-induced expansion of hypoxic zones and ocean deoxygenation (DeO2). Nevertheless, effects of DeO2 on phytoplankton have been neglected due to technical bottlenecks on examining O2 effects on O2-producing organisms. Here we show that lowered O2 levels increased primary productivity of a coastal phytoplankton assemblage, and enhanced photosynthesis and growth in the coastal diatom Thalassiosira weissflogii. Mechanistically, reduced O2 suppressed mitochondrial respiration and photorespiration of T. weissflogii, but increased the efficiency of their CO2 concentrating mechanisms (CCMs), effective quantum yield and improved light use efficiency, which was apparent under both ambient and elevated CO2 concentrations leading to ocean acidification (OA). While the elevated CO2 treatment partially counteracted the effect of low O2 in terms of CCMs activity, reduced levels of O2 still strongly enhanced phytoplankton primary productivity. This implies that decreased availability of O2 with progressive DeO2 could boost re-oxygenation by diatom-dominated phytoplankton communities, especially in hypoxic areas, with potentially profound consequences for marine ecosystem services in coastal and pelagic oceans., Sun et al. investigate the effects of current ambient and potential future oxygen levels on phytoplankton growth and photosynthesis with field observations and mesocosm and lab experiments. Their results demonstrate positive effects of low O2 on phytoplankton growth, photosynthesis, and inorganic carbon acquisition at current and future high levels of CO2.

In addition to ocean acidification, a significant recent warming trend in Chinese coastal waters has received much attention. However, studies of the combined effects of warming and acidification on natural coastal phytoplankton assemblages here are scarce. We conducted a continuous incubation experiment with a natural spring phytoplankton assemblage collected from the Bohai Sea near Tianjin. Experimental treatments used a full factorial combination of temperature (7 and 11°C) and pCO2(400 and 800 ppm) treatments. Results suggest that changes in pCO2and temperature had both individual and interactive effects on phytoplankton species composition and elemental stoichiometry. Warming mainly favored the accumulation of picoplankton and dinoflagellate biomass. Increased pCO2significantly increased particulate organic carbon to particulate organic phosphorus (C:P) and particulate organic carbon to biogenic silica (C:BSi) ratios, and decreased total diatom abundance; in the meanwhile, higher pCO2significantly increased the ratio of centric to pennate diatom abundance. Warming and increased pCO2both greatly decreased the proportion of diatoms to dinoflagellates. The highest chlorophyllabiomass was observed in the high pCO2, high temperature phytoplankton assemblage, which also had the slowest sinking rate of all treatments. Overall, there were significant interactive effects of increased pCO2and warming on dinoflagellate abundance, pennate diatom abundance, diatom vs. dinoflagellates ratio and the centric vs. pennate ratio. These findings suggest that future ocean acidification and warming trends may individually and cumulatively affect coastal biogeochemistry and carbon fluxes through shifts in phytoplankton species composition and sinking rates.

SummaryIn the surface waters of the warm oligotrophic ocean, filaments and aggregated colonies of the nitrogen (N)-fixing cyanobacteriumTrichodesmiumcreate microscale nutrient-rich oases. These hotspots fuel primary productivity and harbor a diverse consortium of heterotrophs. Interactions with associated microbiota can affect the physiology ofTrichodesmium, often in ways that have been predicted to support its growth. Recently, it was found that trimethylamine (TMA), a globally-abundant organic N compound, inhibits N2fixation in cultures ofTrichodesmiumwithout impairing growth rate, suggesting thatTrichodesmiumreceives nitrogen from TMA. In this study,15N-TMA DNA stable isotope probing (SIP) of aTrichodesmiumenrichment was employed to further investigate TMA metabolism and determine if TMA-N is incorporated directly or secondarily via cross-feeding facilitated by microbial associates. Herein we identify two members of the marineRoseobacterclade (MRC) of Alphaproteobacteria as the likely metabolizers of TMA and provide genomic evidence that they converted TMA into a more readily available form of N, e.g., NH4+, which was subsequently used byTrichodesmiumand the rest of the community. The results implicate microbiome-mediated carbon (C) and N transformations in modulating N2fixation, and thus highlight the involvement of host-associated heterotrophs in global biogeochemical cycling.

Carbon, nitrogen, and phosphate are three macroelements of organisms. These elements are core components of organic matter and biological macromolecules. For this reason, interest in the measurement of particulate organic carbon (POC), nitrogen (PON), and phosphorus (POP) is becoming a hot research topic. In this section, the measurement methods for marine POC, PON, and POP, such as theory of operation, sampling and measuring procedures, and calculation, were introduced so that the data are of high quality and comparable.

Calcification and silicification are two major kinds of biomineralization on the Earth. Coccolithophore and diatom are major calcifier and silicifier in the oceans, respectively. Thus, these marine phytoplankton play important roles in global cycle of carbon, silicon, and calcium. In this section, the standard measurement methods for calcification and silicification, such as measuring principles, sampling and measuring procedures, and calculation, were introduced using coccolithophore and diatom as examples, respectively.

Trace metals are involved in many metabolic pathways of marine phytoplankton, and are involved in regulating their growth and productivity, thereby influencing the community structure and function of the marine ecosystem. As such, trace metals play important roles in the marine biogeochemical cycles of carbon and nitrogen. However, due to the low solubility in seawater, the bio-availability of trace metals such as Zn, Co, and especially Fe may limit the growth of phytoplankton in many oceanic areas.

© 2020 by the authors. The characteristics of removable magnetostrictive thin patches are investigated for the generation of guided waves in plates. The directivity patterns of SH, S0 and A0 modes have been measured in a thin metallic plate for different combinations of static and dynamic magnetic field directions. This used different coil geometries such as racetrack and spiral coils to generate the dynamic magnetic field, as well as separate biasing static magnetic fields from permanent magnets. This arrangement generated signals via both Lorentz and magnetostrictive forces, and the resultant emitted guided waves were studied for different dynamic and static magnetic field directions and magnitudes. It is demonstrated that different guided wave modes can be produced by controlling these parameters. Marie Skłodowska Curie Training Network in Non-Destructive Testing and Structural Health Monitoring of Aircraft structures

Dissolution of anthropogenic CO2 into the oceans results in ocean acidification (OA), altering marine chemistry with consequences for primary, secondary, and tertiary food web producers. Here we examine how OA could affect the food quality of primary producers and subsequent trophic transfer to second and tertiary producers. Changes in food quality induced by OA are often related to secondary metabolites in primary producers, such as enriched phenolics in microalgae and iodine in brown algae. These biomolecules can then be transferred to secondary producers, potentially affecting seafood quality and other marine ecosystem services. Furthermore, shifts in dominant functional groups of primary producers under the influence of OA would also impact higher trophic levels through food web interactions. It is challenging to understand how these complex food chain effects of OA may be expressed under the influence of fluctuating environments or multiple drivers, and how these effects can be scaled up through marine food webs to humans.

A major challenge in modern biology is understanding how the effects of short-term biological responses influence long-term evolutionary adaptation, defined as a genetically determined increase in fitness to novel environments. This is particularly important in globally important microbes experiencing rapid global change, due to their influence on food webs, biogeochemical cycles, and climate. Epigenetic modifications like methylation have been demonstrated to influence short-term plastic responses, which ultimately impact long-term adaptive responses to environmental change. However, there remains a paucity of empirical research examining long-term methylation dynamics during environmental adaptation in nonmodel, ecologically important microbes. Here, we show the first empirical evidence in a marine prokaryote for long-term m5C methylome modifications correlated with phenotypic adaptation to CO2, using a 7-year evolution experiment (1,000+ generations) with the biogeochemically important marine cyanobacterium Trichodesmium. We identify m5C methylated sites that rapidly changed in response to high (750 µatm) CO2 exposure and were maintained for at least 4.5 years of CO2 selection. After 7 years of CO2 selection, however, m5C methylation levels that initially responded to high-CO2 returned to ancestral, ambient CO2 levels. Concurrently, high-CO2 adapted growth and N2 fixation rates remained significantly higher than those of ambient CO2 adapted cell lines irrespective of CO2 concentration, a trend consistent with genetic assimilation theory. These data demonstrate the maintenance of CO2-responsive m5C methylation for 4.5 years alongside phenotypic adaptation before returning to ancestral methylation levels. These observations in a globally distributed marine prokaryote provide critical evolutionary insights into biogeochemically important traits under global change.

Measurements are presented which demonstrate that near infrared (NIR) spectroscopy can be used to identify chemicals concealed behind clothing. This has been achieved for detector stand-off distances of 3 m. The optical properties of a range of clothing materials have been investigated, and the transmission of NIR signals found to be sufficient for spectroscopy. The study has shown that granular solid materials can be identified when hidden behind a layer of clothing. Examples of chemicals used in this study include ammonium nitrate and other ammonium salts. Details of the current measurements and results are given, together with suggestions for increasing detection sensitivity.

Fabry-Pérot ultrasonic metamaterials have been additively manufactured using laser powder bed fusion to contain subwavelength holes with a high aspect-ratio of width to depth. Such metamaterials require the acoustic impedance mismatch between the structure and the immersion medium to be large. It is shown for the first time that metallic structures fulfil this criterion for applications in water over the 200–800 kHz frequency range. It is also demonstrated that laser powder bed fusion is a flexible fabrication method for the ceration of structures with different thicknesses, hole geometry and tapered openings, allowing the acoustic properties to be modified. It was confirmed via both finite element simulation and practical measurements that these structures supported Fabry-Pérot resonances, needed for metamaterial operation, at ultrasonic frequencies in water. It was also demonstrated the the additively-manufactured structures detected the presence of a sub-wavelength slit aperture in water. Publisher PDF

Diatoms have well-recognized roles in fixing and exporting carbon and supplying energy to marine ecosystems, but only recently have we begun to explore the diversity and importance of nano- and pico-diatoms. Here we describe a small (~5 μm) diatom from the genus Chaetoceros Isolated from a wintertime temperate estuary (2° C, Narragansett Bay, RI), with a unique obligate specialization for low-light environments (< 120 μmol photons m-2 sec-1). This diatom exhibits a striking interaction between irradiance and thermal responses whereby as temperatures increase, so does its susceptibility to light stress. Historical 18S rRNA amplicon data from our study site show this isolate was abundant throughout a six-year period, and its presence strongly correlates with winter and early spring months when light and temperature are low. Two ASVs matching this isolate had a circumpolar distribution in Tara Polar Ocean Circle samples, indicating its unusual light and temperature requirements are adaptations to life in a cold, dark environment. We expect this isolate’s low light, psychrophilic niche to shrink as future warming-induced stratification increases both light and temperature levels experienced by high latitude marine phytoplankton.

In the context of continuously increasing anthropogenic nitrogen inputs, knowledge of how ammonia oxidation (AO) in the ocean responds to warming is crucial to predicting future changes in marine nitrogen biogeochemistry. Here, we show divergent thermal response patterns for marine AO across a wide onshore/offshore trophic gradient. We find ammonia oxidizer community and ambient substrate co-regulate optimum temperatures (Topt), generating distinct thermal response patterns with Topt varying from ≤14 °C to ≥34 °C. Substrate addition elevates Topt when ambient substrate is unsaturated. The thermal sensitivity of kinetic parameters allows us to predict responses of both AO rate and Topt at varying substrate and temperature below the critical temperature. A warming ocean promotes nearshore AO, while suppressing offshore AO. Our findings reconcile field inconsistencies of temperature effects on AO, suggesting that predictive biogeochemical models need to include such differential warming mechanisms on this key nitrogen cycle process., Microbial ammonia oxidation is important in marine nutrient cycling and greenhouse gas dynamics, but the responses to ocean warming are unclear. Here coast to open ocean incubations show that projected year 2100 temperatures might be too hot for these microbes in oligotrophic regions to handle, but may facilitate oxidation rates in coastal waters.

The Southern Ocean (SO) harbours some of the most intense phytoplankton blooms on Earth. Changes in temperature and iron availability are expected to alter the intensity of SO phytoplankton blooms, but little is known about how environmental change will influence community composition and downstream biogeochemical processes. We performed experimental manipulations on surface ocean microbial communities from McMurdo Sound in the Ross Sea, with and without iron addition, at −0.5 °C, 3 °C, and 6 °C. We then examined nutrient uptake patterns as well as the growth and molecular responses of two dominant diatoms, Fragilariopsis and Pseudo-nitzschia, to these conditions. We found that nitrate uptake and primary productivity were elevated at increased temperature in the absence of iron addition, and were even greater at high temperature with added iron. Pseudo-nitzschia became more abundant under increased temperature without added iron, while Fragilariopsis required additional iron to benefit from warming. We attribute the apparent advantage Pseudo-nitzschia shows under warming to upregulation of iron-conserving photosynthetic processes, utilization of iron-economic nitrogen assimilation mechanisms, and increased iron uptake and storage. These data identify important molecular and physiological differences between dominant diatom groups and add to the growing body of evidence for Pseudo-nitzschia’s increasingly important role in warming SO ecosystems. This study also suggests that temperature-driven shifts in SO phytoplankton assemblages may increase utilization of the vast pool of excess nutrients in iron-limited SO surface waters, and thereby influence global nutrient distributions and carbon cycle.Significance StatementPhytoplankton assemblages contribute to the Southern Ocean’s ability to absorb atmospheric CO2, form the base of marine food webs, and shape the global distribution of macronutrients. Anthropogenic climate change is altering the SO environment, yet we do not fully understand how resident phytoplankton will react to this change. By comparing the responses of two prominent SO diatom groups to changes in temperature and iron in a natural community, we find that one group, Pseudo-nitzschia, grows better under warmer low-iron conditions by managing cellular iron demand and efficiently increasing photosynthetic capacity. This ability to grow and draw down nutrients in the face of warming, regardless of iron availability, may have major implications for ocean ecosystems and global nutrient and carbon cycles.

Arsenic pollution is a widespread threat to marine life, but the ongoing rise pCO(2) levels is predicted to decrease bio-toxicity of arsenic. However, the effects of arsenic toxicity on marine primary producers under elevated pCO(2) are not well characterized. Here, we studied the effects of arsenic toxicity in three globally distributed diatom species (Phaeodactylum tricornutum, Thalassiosira pseudonana, and Chaetoceros mulleri) after short-term acclimation (ST, 30 days), medium-term exposure (MT, 750 days), and long-term (LT, 1460 days) selection under ambient (400 µatm) and elevated (1000 and 2000 µatm) pCO(2). We found that elevated pCO(2) alleviated arsenic toxicity even after short acclimation times but the magnitude of the response decreased after mid and long-term adaptation. When fed with these elevated pCO(2) selected diatoms, the scallop Patinopecten yessoensis had significantly lower arsenic content (3.26–52.83%). Transcriptomic and biochemical analysis indicated that the diatoms rapidly developed arsenic detoxification strategies, which included upregulation of transporters associated with shuttling harmful compounds out of the cell to reduce arsenic accumulation, and upregulation of proteins involved in synthesizing glutathione (GSH) to chelate intracellular arsenic to reduce arsenic toxicity. Thus, our results will expand our knowledge to fully understand the ecological risk of trace metal pollution under increasing human activity induced ocean acidification.

The extent and ecological significance of intraspecific diversity within marine microbial populations is still poorly understood, and it remains unclear if such strain-level microdiversity will affect fitness and persistence in a rapidly changing ocean environment. In this study, we cultured 11 sympatric strains of the ubiquitous marine picocyanobacterium Synechococcus isolated from a Narragansett Bay (Rhode Island, USA) phytoplankton community thermal selection experiment. Despite all 11 isolates being highly similar (with average nucleotide identities of >99.9%, with 98.6-100% of the genome aligning), thermal performance curves revealed selection at warm and cool temperatures had subdivided the initial population into thermotypes with pronounced differences in maximum growth temperatures. Within the fine-scale genetic diversity that did exist within this population, the two divergent thermal ecotypes differed at a locus containing genes for the phycobilisome antenna complex. Our study demonstrates that present-day marine microbial populations can contain microdiversity in the form of cryptic but environmentally-relevant thermotypes that may increase their resilience to future rising temperatures.SignificanceNumerous studies exist comparing the responses of distinct taxonomic groups of marine microbes to a warming ocean (interspecific thermal diversity). For example, Synechococcus, a nearly globally distributed unicellular marine picocyanobacterium that makes significant contributions to oceanic primary productivity, contains numerous taxonomically distinct lineages with well documented temperature relationships. Little is known though about the diversity of functional responses to temperature within a given population where genetic similarity is high (intraspecific thermal diversity). This study suggests that understanding the extent of this functional intraspecific microdiversity is an essential prerequisite to predicting the resilience of biogeochemically essential microbial groups such as marine Synechococcus to a changing climate.

Experiments have been performed to demonstrate that ultrasound in the 100&ndash, 400 kHz frequency range can be used to propagate signals through various types of industrial insulation. This is despite the fact that they are highly attenuating to ultrasonic signals due to scattering and viscoelastic effects. The experiments used a combination of piezocomposite transducers and pulse compression processing. This combination allowed signal-to-noise levels to be enhanced so that signals reflected from the surface of an insulated and cladded steel pipe could be obtained.

Trichodesmium is a globally important marine microbe that provides fixed nitrogen to otherwise N limited ecosystems. In nature, nitrogen fixation is likely regulated by iron or phosphate availability, but the extent and interaction of these controls is unclear. From metaproteomics analyses using established protein biomarkers for iron and phosphate stress, we found that co-stress is the norm rather than the exception for field Trichodesmium colonies. Counter-intuitively, the nitrogenase enzyme was most abundant under co-stress, consistent with the idea that Trichodesmium has a specific physiological state under nutrient co-stress. Organic nitrogen uptake was observed to occur simultaneously with nitrogen fixation. Quantification of the phosphate ABC transporter PstC combined with a cellular model of nutrient uptake suggested that Trichodesmium is confronted by the biophysical limits of membrane space and diffusion rates for iron and phosphate acquisition. Colony formation may benefit nutrient acquisition from particulate and organic nutrient sources, alleviating these pressures. The results indicate that to predict the behavior of Trichodesmium, we must consider multiple nutrients simultaneously across biogeochemical contexts.

Mid-infrared signals in the 2–5 μm wavelength range have been transmitted through samples of polymer pipes, as commonly used in the water supply industry. It is shown that simple through-transmission images can be obtained using a broad spectrum source and a suitable camera. This leads to the possibility of tomography, where images are obtained as the measurement system is rotated with respect to the axis of the pipe. The unusual 3D geometry created by a source of finite size and the imaging plane of a camera, plus the fact that refraction at the pipe wall would cause significant ray bending, meant that the reconstruction of tomographic images had to be considered with some care. A result is shown for a thinning defect on the inner wall of a polymer water pipe, demonstrating that such changes can be reconstructed successfully.

Pulse compression applied to the signal processing in NDT inspections has shown significant improvement in the signal-to-noise-ratio of the measurements. The sensitivity of ultrasonic phased array measurements is enhanced when combined with pulse compression procedures. In this work, pulse compression has been implemented to linear array transducers, while using frequency modulated, chirp excitation signals. A system of signal generation and acquisition has specifically been designed for the realization of the proposed phased array inspection system based on pulse compression. A reference aluminum sample with known flat bottom holes was inspected with the proposed system. The spatial and lateral resolutions obtained from Sector B-scan images demonstrate the quality of defect detection and characterization.

To investigate effects of UV radiation (UVR, 280–400 nm) on coccolithophorids under nutrient-limited conditions, we grew Gephyrocapsa oceanica to determine its resilience to consecutive daily short-term exposures to +UVR (irradiances >295 nm) under a range of nitrate availabilities (100, 24, 12, 6 and 3 μM). +UVR alone significantly hampered the growth of G. oceanica, with the synergistic negative effects of +UVR and N-limitation being about 58% and 22% greater than under UVR or N-limitation alone, respectively. Most 3 μM nitrate cultures died, but those exposed to UVR succumbed sooner. This was due to a failure of photoprotection and repair mechanisms under low N-availability with exposures to UVR. Additionally, the UVR-induced inhibition of the effective quantum yield of photosystem II (PSII) was significantly higher and was further aggravated by N limitation. The algal cells increased photoprotective pigments and UV-absorbing compounds as a priority rather than using calcification for defense against UVR, indicating a trade-off in energy and resource allocation. Our results indicate the negative effects of UVR on coccolithophorid growth and photosynthesis, and highlight the important role of N availability in defense against UVR as well as high PAR. We predict that enhanced N-limitation in future surface oceans due to warming-induced stratification will exacerbate the sensitivity of G. oceanica to UVR, while coccolithophores can be potentially more susceptible to other environmental stresses due to increased levels of nutrient limitation.

The cyanobacterium Trichodesmium fixes as much as half of the nitrogen (N2) that supports tropical open-ocean biomes, but its growth is frequently limited by iron (Fe) availability1,2. How future ocean warming may interact with this globally widespread Fe limitation of Trichodesmium N2 fixation is unclear3. Here, we show that the optimum growth temperature of Fe-limited Trichodesmium is ~5 °C higher than for Fe-replete cells, which results in large increases in growth and N2 fixation under the projected warmer Fe-deplete sea surface conditions. Concurrently, the cellular Fe content decreases as temperature rises. Together, these two trends result in thermally driven increases of ~470% in Fe-limited cellular iron use efficiencies (IUEs), defined as the molar quantity of N2 fixed by Trichodesmium per unit time per mole of cellular Fe (mol N2 fixed h–1 mol Fe–1), which enables Trichodesmium to much more efficiently leverage the scarce available Fe supplies to support N2 fixation. Modelling these results in the context of the IPCC representative concentration pathway (RCP) 8.5 global warming scenario4 predicts that IUEs of N2 fixers could increase by ~76% by 2100, and largely alleviate the prevailing Fe limitation across broad expanses of the tropical Pacific and Indian Oceans. Thermally enhanced cyanobacterial IUEs could increase future global marine N2 fixation by ~22% over the next century, and thus profoundly alter the biology and biogeochemistry of open-ocean ecosystems. The growth of nitrogen-fixing marine cyanobacteria Trichodesmium is limited by iron availability under current conditions. However warmer temperatures reduce the iron requirement, allowing greater growth rates and increased nitrogen fixation.

International audience; Marine life is controlled by multiple physical and chemical drivers and by diverse ecological processes. Many of these oceanic properties are being altered by climate change and other anthropogenic pressures. Hence, identifying the influences of multifaceted ocean change, from local to global scales, is a complex task. To guide policy‐making and make projections of the future of the marine biosphere, it is essential to understand biological responses at physiological, evolutionary and ecological levels. Here, we contrast and compare different approaches to multiple driver experiments that aim to elucidate biological responses to a complex matrix of ocean global change. We present the benefits and the challenges of each approach with a focus on marine research, and guidelines to navigate through these different categories to help identify strategies that might best address research questions in fundamental physiology, experimental evolutionary biology and community ecology. Our review reveals that the field of multiple driver research is being pulled in complementary directions: the need for reductionist approaches to obtain process‐oriented, mechanistic understanding and a requirement to quantify responses to projected future scenarios of ocean change. We conclude the review with recommendations on how best to align different experimental approaches to contribute fundamental information needed for science‐based policy formulation.

Coccolithophores are important oceanic primary producers not only in terms of photosynthesis but also because they produce calcite plates called coccoliths. Ongoing ocean acidification associated with changing seawater carbonate chemistry may impair calcification and other metabolic functions in coccolithophores. While short-term ocean acidification effects on calcification and other properties have been examined in a variety of coccolithophore species, long-term adaptive responses have scarcely been documented, other than for the single species Emiliania huxleyi. Here, we investigated the effects of ocean acidification on another ecologically important coccolithophore species, Gephyrocapsa oceanica, following 1,000 generations of growth under elevated CO2 conditions (1,000 μatm). High CO2 -selected populations exhibited reduced growth rates and enhanced particulate organic carbon (POC) and nitrogen (PON) production, relative to populations selected under ambient CO2 (400 μatm). Particulate inorganic carbon (PIC) and PIC/POC ratios decreased progressively throughout the selection period in high CO2 -selected cell lines. All of these trait changes persisted when high CO2 -grown populations were moved back to ambient CO2 conditions for about 10 generations. The results suggest that the calcification of some coccolithophores may be more heavily impaired by ocean acidification than previously predicted based on short-term studies, with potentially large implications for the ocean's carbon cycle under accelerating anthropogenic influences.

There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure.

We investigated the effects of temperature and CO2 variation on the growth and elemental composition of cultures of the diatom Pseudo-nitzschia subcurvata and the prymnesiophyte Phaeocystis antarctica, two ecologically dominant phytoplankton species isolated from the Ross Sea, Antarctica. To obtain thermal functional response curves, cultures were grown across a range of temperatures from 0 °C to 14 °C. In addition, a competition experiment examined the relative abundance of both species at 0 °C and 6 °C. CO2 functional response curves were conducted from 100 to 1730 ppm at 2 °C and 8 °C to test for interactive effects between the two variables. The growth of both phytoplankton was significantly affected by temperature increase, but with different trends. Growth rates of P. subcurvata increased with temperature from 0 °C to maximum levels at 8 °C, while the growth rates of P. antarctica only increased from 0 °C to 2 °C. The maximum thermal limits of P. subcurvata and P. antarctica where growth stopped completely were 14 °C and 10 °C, respectively. Although P. subcurvata outcompeted P. antarctica at both temperatures in the competition experiment, this happened much faster at 6 °C than at 0 °C. For P. subcurvata, there was a significant interactive effect in which the warmer temperature decreased the CO2 half saturation constant for growth, but this was not the case for P. antarctica. The growth rates of both species increased with CO2 increases up 425 ppm, and in contrast to significant effects of temperature, the effects of CO2 increase on their elemental composition were minimal. Our results suggest that future warming may be more favorable to the diatom than to the prymnesiophyte, while CO2 increases may not be a major factor in future competitive interactions between Pseudo-nitzschia subcurvata and Phaeocystis antarctica in the Ross Sea.