504 results on '"David, J.S."'
Search Results
52. Effect of temperature on diatom volume, growth rate, and carbon and nitrogen content: reconsidering some paradigms
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Montagnes, David J.S. and Franklin, Daniel J.
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Diatoms -- Environmental aspects ,Temperature -- Environmental aspects ,Earth sciences - Abstract
We examined the response of diatoms to naturally experienced temperatures and tested these hypotheses: (1) diatoms follow the rule that organism size decreases with increasing temperature; (2) diatom growth rate follows a [Q.sub.10]-like response; (3) diatom carbon (C) and nitrogen (N) content per unit volume (V) decrease with increasing size, and changes in temperature affect this relationship; and (4) diatom C: V is the same as that of other phytoplankton. We also present, as predictive equations, relationships between (1) growth rate, temperature, and size; (2) C content and V; and (3) N content and V. Eight diatoms and two flagellates were acclimated for approximately five generations and grown for approximately five more generations at five temperatures (9-25 [degrees] C) on a 14:10 light: dark cycle at ~50 [micro]mol photons [m.sup.-2] [s.sub.-1]. Growth rate, cell V, and C and N content per cell were measured; relationships between these parameters and temperature were determined. For five diatoms and both flagellates, cell V decreased with increasing temperature; cells decrease by ~4% of their mean V per [degrees] C. Growth rate appeared to increase linearly with temperature in all cases. The literature suggests that a linear response is the rule, not the exception. Temperature did not significantly affect C or N per V of diatom species. When all diatoms were considered, both C and N per V decreased with increasing cell size; our data support the argument that diatoms differ from other protists in this respect, but the difference is less pronounced than stated in previous reports.
- Published
- 2001
53. Spatial structure of abundance and diversity of microplanktic ciliates in a coastal lagoon/Estructura espacial de la abundancia y diversidad de los ciliados del microplancton en una laguna costera/Estrutura espacial da abundancia e diversidade dos ciliados do microplancton em uma lagoa costeira
- Author
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Bulit, Celia, Diaz-Avalos, Carlos, and Montagnes, David J.S.
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- 2011
54. Drought-induced photosynthetic inhibition and autumn recovery in two Mediterranean oak species (Quercus ilex and Quercus suber)
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Vaz, M., Pereira, J.S., Gazarini, L.C., David, T.S., David, J.S., Rodrigues, A., Maroco, J., and Chaves, M.M.
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- 2010
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55. Interaction of Complement Defence Collagens C1q and Mannose-Binding Lectin with BMP-1/Tolloid-like Proteinases
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Nicole M. Thielens, Chantal Dumestre-Pérard, Monique Lacroix, Agnès Tessier, Sandrine Vadon-Le Goff, Catherine Moali, Sylvie Ricard-Blum, Leena Bruckner-Tuderman, Alexander Nyström, Dimitra Kiritsi, David J.S. Hulmes, Evelyne Gout, Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Tissulaire et d'ingénierie Thérapeutique UMR 5305 (LBTI), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Immunologie, CHU Grenoble, Freiburg Institute for Advanced Studies, Albert-Ludwigs-Universität Freiburg, Universitätsklinikum Freiburg, Assemblages Supramoléculaires Péricellulaires et Extracellulaires (ASPE), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), SPR (ISBG -UMS 3518), ANR-09-PIRI-0021,STR-ASS-DEF-COL(2009), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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0301 basic medicine ,Proteases ,Skin Neoplasms ,Tolloid-Like Metalloproteinases ,lcsh:Medicine ,chemical and pharmacologic phenomena ,Mannose-Binding Lectin ,Bone morphogenetic protein 1 ,Article ,Bone Morphogenetic Protein 1 ,03 medical and health sciences ,0302 clinical medicine ,Humans ,lcsh:Science ,Complement C1q ,Complement Activation ,Melanoma ,Mannan-binding lectin ,Multidisciplinary ,Innate immune system ,Binding Sites ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Chemistry ,Extracellular matrix assembly ,lcsh:R ,Complement system ,Cell biology ,Epidermolysis Bullosa Dystrophica ,030104 developmental biology ,lcsh:Q ,Ficolin ,030215 immunology - Abstract
The defence collagens C1q and mannose-binding lectin (MBL) are immune recognition proteins that associate with the serine proteinases C1r/C1s and MBL-associated serine proteases (MASPs) to trigger activation of complement, a major innate immune system. Bone morphogenetic protein-1 (BMP-1)/tolloid-like proteinases (BTPs) are metalloproteinases with major roles in extracellular matrix assembly and growth factor signalling. Despite their different functions, C1r/C1s/MASPs and BTPs share structural similarities, including a specific CUB-EGF-CUB domain arrangement found only in these enzymes that mediates interactions with collagen-like proteins, suggesting a possible functional relationship. Here we investigated the potential interactions between the defence collagens C1q and MBL and the BTPs BMP-1 and mammalian tolloid-like-1 (mTLL-1). C1q and MBL bound to immobilized BMP-1 and mTLL-1 with nanomolar affinities. These interactions involved the collagen-like regions of the defence collagens and were inhibited by pre-incubation of C1q or MBL with their cognate complement proteinases. Soluble BMP-1 and mTLL-1 did not inhibit complement activation and the defence collagens were neither substrates nor inhibitors of BMP-1. Finally, C1q co-localized with BMP-1 in skin biopsies following melanoma excision and from patients with recessive dystrophic epidermolysis bullosa. The observed interactions provide support for a functional link between complement and BTPs during inflammation and tissue repair.
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- 2017
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56. Fluorescence-based glucose sensors
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Pickup, John C., Hussain, Faeiza, Evans, Nicholas D., Rolinski, Olaf J., and Birch, David J.S.
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- 2005
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57. Metabolic sensing using fluorescence
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Birch, David J.S., Ganesan, Ashok, and Karolin, Jan
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- 2005
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58. Glucose sensing based on the intrinsic fluorescence of sol-gel immobilized yeast hexokinase
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Hussain, Faeiza, Birch, David J.S., and Pickup, John C.
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- 2005
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59. Cu2+ effects on beta‐amyloid oligomerisation monitored by fluorescence of intrinsic tyrosine
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Rolinski, Olaf Janusz, Alghamdi, Abeer, Wellbrock, Thorben, Birch, David J.S., and Vyshemirsky, Vladislav
- Abstract
A non‐invasive intrinsic fluorescence sensing of the early stages of Alzheimer’s beta amyloid peptide aggregation in the presence of copper ions is reported. By using time‐resolved fluorescence techniques the formation of beta amyloid‐copper complexes and the accelerated peptide aggregation are demonstrated. The shifts in the emission spectral peaks indicate that the peptides exhibit different aggregation pathways than in the absence of copper.
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- 2019
60. Poly(ionic liquids) in solid phase microextraction: recent advances and perspectives
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Isabel M. Marrucho, David J.S. Patinha, and Armando J. D. Silvestre
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Materials science ,Polymers and Plastics ,Direct immersion ,Sorbent material ,New materials ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,Solid-phase microextraction ,01 natural sciences ,Polymerization ,chemistry.chemical_compound ,Fiber coating ,Surface modification ,Extraction phase ,Materials Chemistry ,Organic Chemistry ,Poly(ionic liquids) ,Surfaces and Interfaces ,Solid phase microextraction ,021001 nanoscience & nanotechnology ,Headspace ,0104 chemical sciences ,Metallic support ,chemistry ,Ionic liquid ,Ceramics and Composites ,0210 nano-technology - Abstract
During the last years, poly(ionic liquids) (PILs) have been gaining increased attention as materials for analytical chemistry. This success is due to the fact that PILs synthesis is generally based on the polymerization of ionic liquid monomers (ILMs), and thus some of their remarkable properties are shared with their polymeric form. Consequently, the facile design of task-specific ILMs led to an important platform to design new materials for solid phase microextraction (SPME). In this review, a critical evaluation of the main breakthroughs on the use of PILs as extraction phases for SPME. In particular, this critical review covers from ILMs/PILs synthesis, fiber coating processes, surface modifications (silica and metallic supports), to extraction modes, analytes categories, type of equipment ending with a discussion on limitations and future perspectives. PILs are undoubtedly competing in the frontline as inspiring materials for SPME.
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- 2019
61. Minimally Invasive Repair of Ascending Aortic Pseudoaneurysms: An Alternative to Open Surgical Repair in High-Risk Patients
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Ravi N. Srinivasa, David J.S. Zucker, Eric H. Yang, Murray Kwon, Aaron Smith, and John M. Moriarty
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Adult ,Male ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Risk Assessment ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Pseudoaneurysm ,Blood Vessel Prosthesis Implantation ,0302 clinical medicine ,Risk Factors ,medicine.artery ,Ascending aorta ,Occlusion ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Aged ,Retrospective Studies ,Surgical repair ,Aged, 80 and over ,High risk patients ,business.industry ,Endovascular Procedures ,Stent ,Middle Aged ,Aortic surgery ,medicine.disease ,Embolization, Therapeutic ,Surgery ,Aortic Aneurysm ,Blood Vessel Prosthesis ,Treatment Outcome ,030220 oncology & carcinogenesis ,cardiovascular system ,Female ,Stents ,Cardiology and Cardiovascular Medicine ,business ,Complication ,Aneurysm, False - Abstract
Development of a pseudoaneurysm of the ascending aorta is an uncommon complication of aortic surgery. Several nonsurgical techniques are available for treatment of ascending aortic pseudoaneurysms (AAPs). This report outlines a single-center retrospective experience with 14 nonsurgical procedures for treatment of AAPs in 10 patients. Modified stent grafts, septal defect occlusion devices, coil embolics, and liquid embolics were deployed by transthoracic and endovascular approaches. Complete stasis of the AAP was achieved in 7 of 10 patients (70%). Mean postprocedural recoveries occurred within 3.5 days. Nonsurgical techniques for repair of AAPs offer a comparatively safe and effective alternative to open surgical repair.
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- 2019
62. Malpractice litigation after surgical injury of the spinal accessory nerve: an evidence-based analysis
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Morris, Luc G.T., Ziff, David J.S., and DeLacure, Mark D.
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Nerves, Spinal -- Injuries ,Surgical errors -- Cases ,Surgical errors -- Research ,Medical personnel -- Malpractice ,Medical personnel -- Cases ,Medical personnel -- Research ,Company legal issue ,Health - Published
- 2008
63. Structural information on nanomolecular systems revealed by FRET
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Rolinski, Olaf J., Mathivanan, Chinnaraj, Mcnaught, Gillian, and Birch, David J.S.
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- 2004
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64. Constraints on transpiration from an evergreen oak tree in southern Portugal
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David, T.S, Ferreira, M.I, Cohen, S, Pereira, J.S, and David, J.S
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- 2004
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65. Fluorescence Anisotropy in Sol-Gels: Microviscosities or Growing Silica Nanoparticles Offering a New Approach to Sol-Gel Structure Elucidation?
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Geddes, Chris D., Karolin, Jan, and Birch, David J.S.
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- 2002
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66. Fourth Amendment limitations on the execution of computer searches conducted pursuant to a warrant.
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Ziff, David J.S.
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Warrants (Law) -- Laws, regulations and rules ,Electronic records -- Access control ,Computer files -- Access control ,Searches and seizures -- Laws, regulations and rules ,Government regulation - Published
- 2005
67. M13 bacteriophage purification using poly(ionic liquids) as alternative separation matrices
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Jacinto, Maria João, Patinha, David J.S., Marrucho, Isabel M., Gonçalves, João, Willson, Richard C., Azevedo, Ana M., and Aires-Barros, M. Raquel
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- 2018
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68. The Worst System of Citation Except for All the Others
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Ziff, David J.S.
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- 2017
69. Transient washout of hepatic hemangiomas: Potential pitfall mimicking malignancy
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Anuj Patel, Donald G. Mitchell, Pooja H. Doshi, David J.S. Becker-Weidman, and Thomas A. Hope
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lcsh:Medical physics. Medical radiology. Nuclear medicine ,Pathology ,medicine.medical_specialty ,Blood pool ,High-flow hepatic hemagioma ,lcsh:R895-920 ,Case Report ,Malignancy ,Eovist ,030218 nuclear medicine & medical imaging ,Gadoxetate Disodium ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Radiology, Nuclear Medicine and imaging ,Washout ,business.industry ,Small volume ,medicine.disease ,eye diseases ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Radiology ,sense organs ,business ,Liver parenchyma ,MRI - Abstract
Hemangiomas are the most common tumor of the liver and distinguishing them from malignancy is important. This is a report of 3 hemangiomas in 2 patients that exhibit transient washout of gadoxetate disodium (Eovist), relative to blood pool and liver parenchyma, a characteristic that is used to diagnose hepatocellular carcinoma in at-risk patients. It is important to recognize that high-flow hemangiomas can exhibit transient washout when using a small volume of injected contrast agent. This finding is unlikely to be present on CT examinations because of the larger volume of contrast administered.
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- 2016
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70. New Low-Toxicity Cholinium-Based Ionic Liquids with Perfluoroalkanoate Anions for Aqueous Biphasic System Implementation
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Hugo R. Soares, Isabel M. Marrucho, Liliana C. Tomé, Catarina Florindo, Ana S. Coroadinha, and David J.S. Patinha
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chemistry.chemical_classification ,Aqueous solution ,Low toxicity ,010405 organic chemistry ,Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,General Chemistry ,010402 general chemistry ,Ternary phase ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Chain length ,chemistry ,Ionic liquid ,Environmental Chemistry ,Organic chemistry ,Salting out ,Solubility ,Alkyl - Abstract
This work explores the widening of properties of cholinium-based ionic liquids (ILs) through their combination with perfluoroalkanoate anions so that higher number of aqueous biphasic systems (ABSs) containing nontoxic cholinium-based ILs is available. For that purpose, six cholinium perfluoroalkanoate ILs were synthesized and their cytotoxicity was evaluated using three different animal cell lines, envisaging biotechnology applications. Ternary phase equilibrium data for ABSs composed of the cholinium perfluoroalkanoate, with fluoroalkyl chains from C2 up to C7, using a strong salting out agent, K3PO4, were determined at 25 °C. The results show the relevant role of the size of fluorinated alkyl chain length in the anion since, contrary to other ABSs containing ILs with increasing alkyl chain length in the anion, the ABSs with cholinium perfluoroalkanoates present well-spaced solubility curves, allowing the conclusion that these ABSs can be tuned by a proper choice of the IL. The phase splitting mechanism...
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- 2016
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71. Understanding Body MRI Sequences and Their Ability to Characterize Tissues
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Christopher G. Roth, Chad Silverberg, Anuj Patel, David J.S. Becker-Weidman, and Sandeep Deshmukh
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Pathology ,medicine.medical_specialty ,medicine ,Fibrous tissue ,Computational biology ,Biology - Abstract
Familiarity with how MRI sequences can distinguish different tissues when coupled with an understanding of pathology aids in narrowing differentials or making a specific diagnosis. Utilizing specific MRI pulse sequences allows for identification of key tissue substances such as fat, paramagnetic substances, protein, fibrous tissue, or free or bound water. The identification of these tissue substances allows the radiologist to form narrow or specific diagnoses efficiently. A tissue-based approach to understanding MRI sequences allows the radiologist to both systematically and effectively interpret MRIs despite the large number of pulse sequences particularly in basic MRI body protocols.
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- 2016
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72. Low Resolution Structure Determination Shows Procollagen C-Proteinase Enhancer to be an Elongated Multidomain Glycoprotein
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Bernocco, Simonetta, Steiglitz, Barry M., Svergun, Dmitri I., Petoukhov, Maxim V., Ruggiero, Florence, Ricard-Blum, Sylvie, Ebel, Christine, Geourjon, Christophe, Deléage, Gilbert, Font, Bernard, Eichenberger, Denise, Greenspan, Daniel S., and Hulmes, David J.S.
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- 2003
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73. COL1A1 C-propeptide mutations cause ER mislocalization of procollagen and impair C-terminal procollagen processing
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Catherine Moali, Joan C. Marini, David R. Eyre, Elena Makareeva, Aileen M. Barnes, Sergey Leikin, Emmanuel Bettler, Marina Brusel, John Cassella, Wayne A. Cabral, David J.S. Hulmes, Aarthi Ashok, Efrat Kessler, MaryAnn Weis, Laboratoire de Biologie Tissulaire et d'ingénierie Thérapeutique UMR 5305 (LBTI), Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
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0301 basic medicine ,Collagen helix ,Mutant ,Mutation, Missense ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,macromolecular substances ,Matrix (biology) ,Fibril ,Endoplasmic Reticulum ,Collagen Type I ,Article ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,Cells, Cultured ,integumentary system ,Calorimetry, Differential Scanning ,Chemistry ,Osteoblast ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,[SDV.BDD.MOR]Life Sciences [q-bio]/Development Biology/Morphogenesis ,Endoplasmic reticulum localization ,Fibroblasts ,Osteogenesis Imperfecta ,medicine.disease ,Cell biology ,Protein Structure, Tertiary ,Collagen Type I, alpha 1 Chain ,Procollagen peptidase ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,030104 developmental biology ,medicine.anatomical_structure ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Microscopy, Fluorescence ,Osteogenesis imperfecta ,Molecular Medicine ,030217 neurology & neurosurgery ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology ,Procollagen - Abstract
Mutations in the type I procollagen C-propeptide occur in ~6.5% of Osteogenesis Imperfecta (OI) patients. They are of special interest because this region of procollagen is involved in α chain selection and folding, but is processed prior to fibril assembly and is absent in mature collagen fibrils in tissue. We investigated the consequences of seven COL1A1 C-propeptide mutations for collagen biochemistry in comparison to three probands with classical glycine substitutions in the collagen helix near the C-propeptide and a normal control. Procollagens with C-propeptide defects showed the expected delayed chain incorporation, slow folding and overmodification. Immunofluorescence microscopy indicated that procollagen with C-propeptide defects was mislocalized to the ER lumen, in contrast to the ER membrane localization of normal procollagen and procollagen with helical substitutions. Notably, pericellular processing of procollagen with C-propeptide mutations was defective, with accumulation of pC-collagen and/or reduced production of mature collagen. In vitro cleavage assays with BMP-1 ± PCPE-1 confirmed impaired C-propeptide processing of procollagens containing mutant proα1(I) chains. Overmodified collagens were incorporated into the matrix in culture. Dermal fibrils showed alterations in average diameter and diameter variability and bone fibrils were disorganized. Altered ER-localization and reduced pericellular processing of defective C-propeptides are expected to contribute to abnormal osteoblast differentiation and matrix function, respectively.
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- 2018
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74. Poly(ionic liquid) embedded particles as efficient solid phase microextraction phases of polar and aromatic analytes
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Isabel M. Marrucho, David J.S. Patinha, Armando J. D. Silvestre, Kari Vijayakrishna, and Pothanagandhi Nellepalli
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Gas chromatography ,Polydimethylsiloxane ,Chemistry ,010401 analytical chemistry ,Inorganic chemistry ,Poly(ionic liquids) ,Chain transfer ,Solid phase microextraction ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Solid-phase microextraction ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Styrene ,chemistry.chemical_compound ,Polymerization ,Bromide ,Alcohols ,Ionic liquid ,0210 nano-technology ,Imide ,Increased Surface Area ,BTEX - Abstract
In this work, a facile preparation of SPME fibers with increased surface area is presented. The SPME fibers were prepared by grinding poly(ionic liquids) (PILs) to obtain particles of 1–16 µm and, with the aid of a silicon adhesive, attach these particles to a steel wire support. Three different PILs, poly(1-vinyl-3-benzylimidazolium-co-styrene bromide) [poly(ViBnIm-co-Sty Br)], poly(1-vinyl-3-benzylimidazolium-co-styrene bis(trifluoromethanesulfonyl)imide) [poly(ViBnIm-co-Sty TFSI)] and poly(diallyldimethylamine bis(trifluoromethanesulfonyl)imide) [poly(Pyrr11 TFSI)], were used. The first two PILs were obtained by reversible addition–fragmentation chain transfer polymerization followed by metathesis reactions. The thicknesses of the prepared fibers were found to be 19 ± 4 µm and 85% of the particles used have diameters between 2 and 10 µm. The prepared fibers were tested by performing the headspace extraction of two standard solutions, one containing a mixture of alcohols with different chain lengths, and the other a mixture of aromatic compounds, leading to sorption times of 10 – 15 min due the large surface area attained with this method. PILs with aromatic moieties containing the bromide anion showed high selectivity towards polar compounds, due to the hydrogen basicity of the anion, and also towards aromatic analytes, due to the aromatic nature of styrene moieties and the cation pendant groups. The limits of detection fall in the sub ppb level, while relative standard deviations and reproducibility from fiber-to-fiber found maximums of 16.2% and 22.5%, respectively. Furthermore, the PIL based fibers showed up to 90% higher extraction efficiencies compared to the commercial fibers of polydimethylsiloxane and polyacrylate.
- Published
- 2018
75. Thrombospondin-1 promotes matrix homeostasis by interacting with collagen and lysyl oxidase precursors and collagen cross-linking sites
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Nicholas Pugh, Josephine C. Adams, Richard W. Farndale, Arkadiusz Bonna, Silvia Rosini, and David J.S. Hulmes
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0301 basic medicine ,Male ,Sequence Homology ,Lysyl oxidase ,Matrix metalloproteinase ,Matrix (biology) ,Biochemistry ,Collagen Type I ,Extracellular matrix ,Protein-Lysine 6-Oxidase ,Thrombospondin 1 ,03 medical and health sciences ,Mice ,0302 clinical medicine ,medicine ,Extracellular ,Animals ,Homeostasis ,Humans ,Amino Acid Sequence ,Fibroblast ,Thrombospondins ,Molecular Biology ,Cells, Cultured ,Skin ,Mice, Knockout ,Extracellular Matrix Proteins ,Chemistry ,Cell Biology ,Fibroblasts ,Cell biology ,Extracellular Matrix ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,Cross-Linking Reagents ,030220 oncology & carcinogenesis ,Intracellular - Abstract
Fibrillar collagens of the extracellular matrix are critical for tissue structure and physiology; however, excessive or abnormal deposition of collagens is a defining feature of fibrosis. Regulatory mechanisms that act on collagen fibril assembly potentially offer new targets for antifibrotic treatments. Tissue weakening, altered collagen fibril morphologies, or both, are shared phenotypes of mice lacking matricellular thrombospondins. Thrombospondin-1 (TSP1) plays an indirect role in collagen homeostasis through interactions with matrix metalloproteinases and transforming growth factor–1 (TGF-1). We found that TSP1 also affects collagen fibril formation directly. Compared to skin from wild-type mice, skin from Thbs1-/- mice had reduced collagen cross-linking and reduced prolysyl oxidase (proLOX) abundance with increased conversion to catalytically active LOX. In vitro, TSP1 bound to both the C-propeptide domain of collagen I and the highly conserved KGHR sequences of the collagen triple-helical domain that participate in cross-linking. TSP1 also bound to proLOX and inhibited proLOX processing by bone morphogenetic protein-1. In human dermal fibroblasts (HDFs), TSP1 and collagen I colocalized in intracellular vesicles and on extracellular collagen fibrils, whereas TSP1 and proLOX colocalized only in intracellular vesicles. Inhibition of LOX-mediated collagen cross-linking did not prevent the extracellular association between collagen and TSP1; however, treatment of HDFs with KGHR-containing, TSP1-binding, triple-helical peptides disrupted the collagen-TSP1 association, perturbed the collagen extracellular matrix, and increased myofibroblastic differentiation in a manner that depended on TGF- receptor 1. Thus, the extracellular KGHR-dependent interaction of TSP1 with fibrillar collagens contributes to fibroblast homeostasis.
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- 2018
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76. Layer-by-layer coated imidazolium – styrene copolymers fibers for improved headspace-solid phase microextraction analysis of aromatic compounds
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Kari Vijayakrishna, Armando J. D. Silvestre, Isabel M. Marrucho, Nellepalli Pothanagandhi, and David J.S. Patinha
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Materials science ,Polymers and Plastics ,General Chemical Engineering ,SPME ,02 engineering and technology ,Solid-phase microextraction ,01 natural sciences ,Biochemistry ,Styrene ,chemistry.chemical_compound ,Materials Chemistry ,Copolymer ,Environmental Chemistry ,Thermal stability ,010401 analytical chemistry ,Layer by layer ,Poly(ionic liquids) ,Chain transfer ,General Chemistry ,Solid phase microextraction ,021001 nanoscience & nanotechnology ,Layer-by-layer ,0104 chemical sciences ,BTEX extraction ,Chemical engineering ,chemistry ,Polymerization ,Ionic liquid ,0210 nano-technology ,Spray coating - Abstract
The design of poly(ionic liquids) (PILs) and their application as solid phase microextraction (SPME) fibers has been attracting enormous attention mainly due to the need for new SPME coating materials with improved analytical sensitivity. In this work, the tunability of PILs is explored by preparing different imidazolium monomers bearing benzyl, naphtylmethyl or pentyl pending groups that were subsequently co-polymerized, by reversible addition–fragmentation chain transfer (RAFT) polymerization with styrene. The obtained co-polymers showed excellent thermal stability up to 275 °C, with no melting point up to 250 °C. SPME fibers were prepared by an innovative approach based on layer-by-layer spray coating. The thin (
- Published
- 2018
77. Assembly of Collagen Fibrils de Novo from Soluble Precursors: Polymerization and Copolymerization of Procollagen, pN-Collagen, and Mutated Collagens
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Prockop, Darwin J., primary and Hulmes, David J.S., additional
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- 1994
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78. Poly(ionic liquids) in solid phase microextraction: Recent advances and perspectives
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Patinha, David J.S., primary, Silvestre, Armando J.D., additional, and Marrucho, Isabel M., additional
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- 2019
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79. Atypical COL3A1 variants (glutamic acid to lysine) cause vascular Ehlers–Danlos syndrome with a consistent phenotype of tissue fragility and skin hyperextensibility
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Ghali, Neeti, primary, Baker, Duncan, additional, Brady, Angela F., additional, Burrows, Nigel, additional, Cervi, Elena, additional, Cilliers, Deirdre, additional, Frank, Michael, additional, Germain, Dominique P., additional, Hulmes, David J.S., additional, Jacquemont, Marie-line, additional, Kannu, Peter, additional, Lefroy, Henrietta, additional, Legrand, Anne, additional, Pope, F. Michael, additional, Robertson, Lisa, additional, Vandersteen, Anthony, additional, von Klemperer, Kate, additional, Warburton, Renarta, additional, Whiteford, Margo, additional, and van Dijk, Fleur S., additional
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- 2019
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80. Synthesis of Small Gold Nanorods and Their Subsequent Functionalization with Hairpin Single Stranded DNA
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Mbalaha, Zendesha S., primary, Edwards, Paul R., additional, Birch, David J.S., additional, and Chen, Yu, additional
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- 2019
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81. Roles of the procollagen C-propeptides in health and disease
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Hulmes, David J.S., additional
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- 2019
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82. THE ROLE of a BIKE FIT in CYCLISTS with HIP PAIN. A CLINICAL COMMENTARY
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Wadsworth, David J.S., primary and Weinrauch, Patrick, additional
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- 2019
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83. A multicentre observational study on management of general anaesthesia in elderly patients at high-risk of postoperative adverse outcomes
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Molliex, Serge, primary, Passot, Sylvie, additional, Morel, Jerome, additional, Futier, Emmanuel, additional, Lefrant, Jean Yves, additional, Constantin, Jean Michel, additional, Le Manach, Yannick, additional, Pereira, Bruno, additional, Bruder, N., additional, Vaisse, C., additional, Bechis, C., additional, Bernard, L., additional, Leone, M., additional, Poirier, M., additional, Vincent, A., additional, Abdelkrim, N., additional, Paugam, C., additional, Lion, F., additional, Montravers, P., additional, Langeron, O., additional, Raux, M., additional, Baussier, M., additional, Xu, K., additional, Bart, F., additional, Dagois, S., additional, Plaud, B., additional, Rabuel, C., additional, Roland, E., additional, Biais, M., additional, Nouette-Gaulain, K., additional, Cabart, A., additional, Hanouz, J.L., additional, Lambert, C., additional, Godet, T., additional, Thibault, S., additional, Bouhemad, B., additional, Chambade, E., additional, Bouzat, P., additional, Garot, M., additional, Lebuffe, G., additional, Lallemant, F., additional, Lemery, C., additional, Tavernier, B., additional, de Jong, A., additional, Jaber, S., additional, Verzilli, D., additional, Delannoy, M., additional, Meistelman, C., additional, Carles, M., additional, Tran, L., additional, Bertran, S., additional, Cuvillon, P., additional, Ripart, J., additional, Simon-Pene, S., additional, Boisson, M., additional, Debaene, B., additional, Beloeil, H., additional, Godet, G., additional, Collange, O., additional, Mertes, P.M., additional, Diemunsch, P., additional, Joganah, D., additional, Oehlkern, L., additional, Baulieu, M., additional, Beauchesne, B., additional, Beraud, A.M., additional, Berthier-Berrada, S., additional, Bien, J.Y., additional, Dupont, G., additional, Gavory, J., additional, Lambert, P., additional, Lanoiselée, J., additional, Zufferey, P., additional, Ferré, F., additional, Martin, C., additional, Minville, V., additional, Planté, B., additional, Baffeleuf, B., additional, Ben Abdelkarim, M., additional, David, J.S., additional, Incagnoli, P., additional, Khaled, M., additional, Laplace, M.C., additional, Lefevre, M., additional, Piriou, V., additional, Aubrun, F., additional, Cero, V., additional, Delsuc, C., additional, Faulcon, C., additional, Meuret, P., additional, Rimmelé, T., additional, and Truc, C., additional
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- 2019
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84. Pharmacological preconditioning: comparison of desflurane, sevoflurane, isoflurane and halothane in rabbit myocardium
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Piriou, V., Chiari, P., Lhuillier, F., Bastien, O., Loufoua, J., Raisky, O., David, J.S., Ovize, M., and Lehot, J. -J.
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- 2002
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85. Differentiation of lipid-poor adrenal adenomas from non-adenomas with magnetic resonance imaging: Utility of dynamic, contrast enhancement and single-shot T2-weighted sequences
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Diego R. Martin, Bobby Kalb, Kim Sungjin, Zhengjia Chen, Pardeep Mittal, David J.S. Becker-Weidman, Peter A. Harri, Alton B. Farris, and Hina Arif-Tiwari
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Adenoma ,Adult ,Male ,medicine.medical_specialty ,Adrenal Gland Neoplasms ,Contrast Media ,Sensitivity and Specificity ,Diagnosis, Differential ,Lesion ,Young Adult ,Imaging, Three-Dimensional ,Meglumine ,Adrenal Glands ,Organometallic Compounds ,medicine ,Humans ,Adrenal adenoma ,Radiology, Nuclear Medicine and imaging ,Aged ,Retrospective Studies ,Aged, 80 and over ,Observer Variation ,medicine.diagnostic_test ,business.industry ,Single shot ,Magnetic resonance imaging ,Retrospective cohort study ,General Medicine ,Middle Aged ,Image Enhancement ,medicine.disease ,Lipids ,Magnetic Resonance Imaging ,Confidence interval ,Female ,Radiology ,medicine.symptom ,T2 weighted ,business - Abstract
Purpose To evaluate the utility of dynamic, contrast-enhanced magnetic resonance imaging (MRI) in combination with single-shot T2-weighted (ssT2) sequences in the differentiation of lipid-poor adrenal adenomas from non-adenomas. Materials and methods This retrospective study was approved by the institutional review board and is HIPAA compliant. Between January 2007 and December 2010, 46 patients with MRI demonstrating a lipid-poor adrenal lesion who underwent either surgical resection or a minimum of 24 months of imaging follow-up were identified retrospectively. All images were retrospectively reviewed in blinded fashion by two radiologists. Each adrenal lesion was categorized by dynamic enhancement features and qualitative signal on ssT2 images and was categorized as an adenoma if it demonstrated homogenous enhancement in the arterial phase, washout with capsule enhancement in the delayed phase, and T2 signal isointense to normal adrenal tissue. Any lesion that did not fulfill all the criteria was classified as a non-adenoma. Sensitivity, specificity, positive predictive value, negative predictive value, and accuracy for characterization of adenoma were calculated for each reader with 95% confidence intervals. A κ test assessed level of agreement between readers. Results Application of our criteria lead to an MRI diagnosis of lipid-poor adrenal adenoma with a sensitivity of 84.2–89.5% (16/19–17/19), specificity of 96.3% (26/27), positive predictive value of 94.1–94.4% (16/17–17/18), negative predictive value of 89.7–92.9% (26/29–26/28), and accuracy of 91.3–93.5% (42/46–43/46). Agreement between the two readers showed substantial κ agreement for the differentiation of adenoma from non-adenoma. Conclusions Dynamic, contrast-enhanced T1-weighted three-dimensional gradient echo sequences in combination with ssT2 images can accurately differentiate lipid-poor adrenal adenomas from non-adenomas.
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- 2015
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86. The role of water in cholinium carboxylate ionic liquid’s aqueous solutions
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Liliana C. Tomé, Cristina Silva Pereira, Luís Paulo N. Rebelo, Helga Garcia, Isabel M. Marrucho, Rui Ferreira, and David J.S. Patinha
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chemistry.chemical_classification ,Aqueous solution ,Inorganic chemistry ,Solvation ,Medicinal chemistry ,Atomic and Molecular Physics, and Optics ,Ion ,chemistry.chemical_compound ,Malonate ,chemistry ,Ionic liquid ,Proton NMR ,General Materials Science ,Carboxylate ,Physical and Theoretical Chemistry ,Alkyl - Abstract
Binary systems composed of water and cholinium carboxylate ionic liquids, namely cholinium lactate ([Ch][Lac]), cholinium propanoate ([Ch][Prop]) and cholinium malonate ([Ch][Mal]) were studied from the neat ionic liquid to very diluted aqueous solutions. Densities and viscosities were measured and atypical behaviors were observed, such as the increasing density of the binary [Ch][Prop] + H2O mixtures with increasing water content. In order to get molecular level insights on the IL + H2O solvation schemes, 1H NMR studies were performed. Large deviations were obtained in the anions resonances when compared to those of the cation suggesting that water interacts preferentially with the anion counter-part of the ionic liquid. The increasing density of [Ch][Prop] + H2O system with increasing water content can be related to the orientation of the alkyl chains, as a result of their nanoscale organization. This behavior was confirmed through the study of the thermophysical properties of [Ch][Hex] + H2O mixtures, where this phenomenon is known to occur.
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- 2015
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87. Clinical, structural, biochemical and X-ray crystallographic correlates of pathogenicity for variants in the C-propeptide region of theCOL3A1gene
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Neeti Ghali, David J.S. Hulmes, Frances Elmslie, Anthony Vandersteen, Philip Sawle, Simon T. Holden, Alex Henderson, Natasha S. Stembridge, F. Michael Pope, Mandy Nesbitt, Rebecca C. Pollitt, and David J. P. Ferguson
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Adult ,Male ,Genetics ,Mutation ,Protein Conformation ,Collagen helix ,Perforation (oil well) ,Exons ,Biology ,Crystallography, X-Ray ,medicine.disease_cause ,medicine.disease ,Peptide Fragments ,Exon ,Procollagen peptidase ,Collagen Type III ,Osteogenesis imperfecta ,Collagen disorder ,medicine ,Humans ,Missense mutation ,Ehlers-Danlos Syndrome ,Female ,Genetics (clinical) - Abstract
Vascular Ehlers–Danlos syndrome (vEDS) is a heritable disorder of connective tissue caused by pathological variants in the COL3A1 gene, which encodes the α1 chain of type III collagen. Type III collagen is a major component of skin, arterial walls, and the gastrointestinal tract. Collagen III protein deficiency manifests as an increased risk of rupture, perforation, and dissection of these structures. The most disruptive gene variants affect the collagen helix via glycine substitutions or splice donor site mutations. The C-propeptide region of COL3A1 includes exons 49–52 and has a crucial role in initiating the C-terminal assembly of procollagen monomers in the early stages of collagen biosynthesis. Nineteen COL3A1 variants have previously been reported in these exons, of which four were associated with a severe vEDS phenotype. We identified two novel C-propeptide missense variants; p.Pro1440Leu, p.Arg1432Leu, and a non-stop mutation, c.4400A > T, p. (*1467Leuext*45). These variants produce variable phenotypes ranging from obvious acrogeria to classical or hypermobile EDS. A previously reported variant p.Lys1313Arg is of unknown clinical significance but likely benign, based on this study. Assigning disease pathogenicity remains complex, clinical phenotyping and crystal structure evidence being crucial. We briefly compare reported phenotypes for patients with missense variants in the C-propeptide domain for other human collagen disorders including COL1A1 and COL1A2 (osteogenesis imperfecta). © 2015 Wiley Periodicals, Inc.
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- 2015
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88. Chloride-Sensitive Fluorescent Indicators
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Geddes, Chris D, Apperson, Kathleen, Karolin, Jan, and Birch, David J.S
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- 2001
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89. Near-Infrared Fluorescence Lifetime Assay for Serum Glucose Based on Allophycocyanin-Labeled Concanavalin A
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McCartney, Lydia J., Pickup, John C., Rolinski, Olaf J., and Birch, David J.S.
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- 2001
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90. Mise au point sur la réanimation cardio-pulmonaire initiale
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Gueugniaud, P.Y. and David, J.S.
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- 2001
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91. Influence of Maternal Insulin-Dependent Diabetes Mellitus on Neonatal Morbidity
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Hunter, David J.S., Burrows, Robert F., Mohide, Patrick T., and Whyte, Robin K.
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- 1993
92. Expanding the Applicability of Poly(Ionic Liquids) in Solid Phase Microextraction: Pyrrolidinium Coatings
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David J.S. Patinha, Mehmet Isik, David Mecerreyes, Liliana C. Tomé, Armando J. D. Silvestre, and Isabel M. Marrucho
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steel coatings ,Materials science ,sorbent coatings ,gas chromatography ,polymeric ionic liquid ,water ,02 engineering and technology ,fibers ,Solid-phase microextraction ,chemistry ,lcsh:Technology ,01 natural sciences ,Article ,chemistry.chemical_compound ,poly(ionic liquids) ,General Materials Science ,Thermal stability ,lcsh:Microscopy ,lcsh:QC120-168.85 ,Chromatography ,lcsh:QH201-278.5 ,Polydimethylsiloxane ,lcsh:T ,010401 analytical chemistry ,Extraction (chemistry) ,Sorption ,021001 nanoscience & nanotechnology ,solid phase microextraction ,0104 chemical sciences ,Photopolymer ,lcsh:TA1-2040 ,silica ,Ionic liquid ,extraction ,systems ,lcsh:Descriptive and experimental mechanics ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,Gas chromatography ,UV-photopolymerization ,lcsh:Engineering (General). Civil engineering (General) ,0210 nano-technology ,lcsh:TK1-9971 ,Nuclear chemistry - Abstract
Crosslinked pyrrolidinium-based poly(ionic liquids) (Pyrr-PILs) were synthesized through a fast, simple, and solventless photopolymerization scheme, and tested as solid phase microextraction (SPME) sorbents. A series of Pyrr-PILs bearing three different alkyl side chain lengths with two, eight, and fourteen carbons was prepared, characterized, and homogeneously coated on a steel wire by using a very simple procedure. The resulting coatings showed a high thermal stability, with decomposition temperatures above 350 degrees C, excellent film stability, and lifetime of over 100 injections. The performance of these PIL-based SPME fibers was evaluated using a mixture of eleven organic compounds with different molar volumes and chemical functionalities (alcohols, ketones, and monoterpenes). The Pyrr-PIL fibers were obtained as dense film coatings, with 67 mu m thickness, with an overall sorption increase of 90% and 55% as compared to commercial fibers of Polyacrylate (85 mu m) (PA85) and Polydimethylsiloxane (7 mu m) (PDMS7) coatings, respectively. A urine sample doped with the sample mixture was used to study the matrix effect and establish relative recoveries, which ranged from 60.2% to 104.1%. David J. S. Patinha, and Liliana C. Tome are grateful to FCT (Fundacao para a Ciencia e a Tecnologia) for the PhD research grant SFRH/BD/97042/2013 and the Post-Doctoral research grant (SFRH/BPD/101793/2014), respectively. David J. S. Patinha also thanks the financial support from COST-Exil Project 1206. The NMR data was acquired at CERMAX (Centro de Ressonncia Magnetica Antnio Xavier) which is a member of the National NMR network. This work was partially supported by FCT through Research Unit GREEN-it " Bioresources for Sustainability" (UID/Multi/04551/2013) and the Associate Laboratory CICECO Aveiro Institute of materials (UID/CTM/50011/2013).
- Published
- 2017
93. Cluster dynamics, growth and syneresis during silica hydrogel polymerisation
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Birch, David J.S and Geddes, Chris D
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- 2000
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94. Structural Basis for the Acceleration of Procollagen Processing by Procollagen C-Proteinase Enhancer-1
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Pulido, David, primary, Sharma, Urvashi, additional, Vadon-Le Goff, Sandrine, additional, Hussain, Sadaf-Ahmahni, additional, Cordes, Sarah, additional, Mariano, Natacha, additional, Bettler, Emmanuel, additional, Moali, Catherine, additional, Aghajari, Nushin, additional, Hohenester, Erhard, additional, and Hulmes, David J.S., additional
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- 2018
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95. A 192×128 Time Correlated Single Photon Counting Imager in 40nm CMOS Technology
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Henderson, Robert K., primary, Johnston, Nick, additional, Chen, Haochang, additional, Li, David Day-Uei, additional, Hungerford, Graham, additional, Hirsch, Richard, additional, McLoskey, David, additional, Yip, Philip, additional, and Birch, David J.S., additional
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- 2018
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96. Near-infrared excitation of alkane ultra-violet fluorescence
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Volkmer, Andreas, Wynne, Klaas, and Birch, David J.S
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- 1999
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97. Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)
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Warren, Alan, Patterson, David J., Dunthorn, Micah, Clamp, John C., Achilles Day, Undine E.M., Aescht, Erna, Al-Farraj, Saleh A., Al-Quraishy, Saleh, Al-Rasheid, Khaled, Carr, Martin, G. Day, John, Dellinger, Marc, El-Serehy, Hamed A., Fan, Yangbo, Gao, Feng, Gao, Shan, Gong, Jun, Gupta, Renu, Hu, Xiaozhong, Kamra, Komal, Langlois, Gaytha, Lin, Xiaofeng, Lipscomb, Diana, Lobban, Christopher S., Luporini, Pierangelo, Lynn, Denis H., Ma, Honggang, Macek, Miroslav, Mackenzie-Dodds, Jacqueline, Makhija, Seema, Mansergh, Robert I., Martín Cereceda, María Mercedes, McMiller, Nettie, Montagnes, David J.S., Nikolaeva, Svetlana, Ong'ondo, Geoffrey Odhiambo, Pérez Uz, María Blanca, Purushothaman, Jasmine, Quintela Alonso, Pablo, Rotterová, Johana, Santoferrara, Luciana, Shao, Chen, Shen, Zhuo, Shi, Xinlu, Song, Weibo, Stoeck, Thorsten, Terza, Antonietta La, Vallesi, Adriana, Wang, Mei, Weisse, Thomas, Wiackowski, Krzysztof, Wu, Lei, Xu, Kuidong, Yi, Zhenzhen, Zufall, Rebecca, Agatha, Sabine, Warren, Alan, Patterson, David J., Dunthorn, Micah, Clamp, John C., Achilles Day, Undine E.M., Aescht, Erna, Al-Farraj, Saleh A., Al-Quraishy, Saleh, Al-Rasheid, Khaled, Carr, Martin, G. Day, John, Dellinger, Marc, El-Serehy, Hamed A., Fan, Yangbo, Gao, Feng, Gao, Shan, Gong, Jun, Gupta, Renu, Hu, Xiaozhong, Kamra, Komal, Langlois, Gaytha, Lin, Xiaofeng, Lipscomb, Diana, Lobban, Christopher S., Luporini, Pierangelo, Lynn, Denis H., Ma, Honggang, Macek, Miroslav, Mackenzie-Dodds, Jacqueline, Makhija, Seema, Mansergh, Robert I., Martín Cereceda, María Mercedes, McMiller, Nettie, Montagnes, David J.S., Nikolaeva, Svetlana, Ong'ondo, Geoffrey Odhiambo, Pérez Uz, María Blanca, Purushothaman, Jasmine, Quintela Alonso, Pablo, Rotterová, Johana, Santoferrara, Luciana, Shao, Chen, Shen, Zhuo, Shi, Xinlu, Song, Weibo, Stoeck, Thorsten, Terza, Antonietta La, Vallesi, Adriana, Wang, Mei, Weisse, Thomas, Wiackowski, Krzysztof, Wu, Lei, Xu, Kuidong, Yi, Zhenzhen, Zufall, Rebecca, and Agatha, Sabine
- Abstract
Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN-BC proposes to populate The Ciliate Guide, an online database, with biodiversity-related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data., U.S. National Science Foundation, National Natural Science Foundation of China, Depto. de Genética, Fisiología y Microbiología, Fac. de Ciencias Biológicas, TRUE, pub
- Published
- 2017
98. Imaging Surveillance in Patients After a Benign Fine-Needle Aspiration Biopsy of the Thyroid: Associated Cost and Incidence of Subsequent Cancer
- Author
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Laurence Parker, Neil Malhotra, David F Reilly, Naveen Selvam, Levon N. Nazarian, and David J.S. Becker-Weidman
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Cost-Benefit Analysis ,Biopsy, Fine-Needle ,030209 endocrinology & metabolism ,Sensitivity and Specificity ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Risk Factors ,Biopsy ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,030212 general & internal medicine ,Thyroid Neoplasms ,Watchful Waiting ,Thyroid cancer ,Aged ,Ultrasonography ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Medical record ,Incidence ,Thyroid ,Cancer ,Reproducibility of Results ,General Medicine ,Health Care Costs ,Middle Aged ,Pennsylvania ,medicine.disease ,Institutional review board ,Fine-needle aspiration ,medicine.anatomical_structure ,Population Surveillance ,Female ,Radiology ,Neoplasm Recurrence, Local ,business ,Watchful waiting - Abstract
The objective of our study was to determine patterns and cost of imaging tumor surveillance in patients after a benign fine-needle aspiration (FNA) biopsy of the thyroid in a large teaching hospital as well as the rate of subsequent cancer detection.This cohort study was approved by the appropriate institutional review board and complied with HIPAA. All patients who had a benign thyroid FNA biopsy between January 1, 1999, and December 31, 2003, were identified from an institutional pathology database. We gathered information from electronic medical records on imaging tumor surveillance and subsequent cancer detection. Cost was determined using the facility total relative value unit and the 2014 Hospital Outpatient Prospective Payment System conversion factor.Between January 1, 1999, and December 31, 2003, 1685 patients had a benign thyroid FNA biopsy, 800 (47.5%) of whom underwent follow-up imaging. These patients underwent 2223 thyroid ultrasound examinations, 606 ultrasound-guided thyroid FNA biopsies, 78 thyroid scintigraphy examinations, 168 neck CTs, and 53 neck MRIs at a cost of $529,874, $176,157, $39,622, $80,580, and $53,114, respectively, for a total cost of $879,347 or $1099 per patient. The mean length of follow-up was 7.3 years, during which time 19 (2.4%) patients were diagnosed with thyroid cancer at a cost of $46,281 per cancer. Seventeen (89.5%) were diagnosed with papillary carcinoma and two (10.5%) with Hurthle cell carcinoma.Over a 5-year period, about half of the patients who had a benign thyroid FNA biopsy underwent follow-up imaging at considerable cost with a small rate of subsequent malignancy.
- Published
- 2016
99. Structural basis of fibrillar collagen trimerization and related genetic disorders
- Author
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Jean-Marie Bourhis, Karl Harlos, David J.S. Hulmes, Natacha Mariano, Catherine Moali, Nushin Aghajari, Yuguang Zhao, E. Yvonne Jones, Jean-Yves Exposito, Microbiologie moléculaire et biochimie structurale / Molecular Microbiology and Structural Biochemistry (MMSB), Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Models, Molecular ,[SDV]Life Sciences [q-bio] ,Molecular Sequence Data ,Mutation, Missense ,macromolecular substances ,Biology ,medicine.disease_cause ,Crystallography, X-Ray ,03 medical and health sciences ,Collagen Type III ,0302 clinical medicine ,Protein structure ,Structural Biology ,medicine ,Humans ,Amino Acid Sequence ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Mutation ,Cartilage ,Collagen Diseases ,Phenotype ,3. Good health ,Protein Structure, Tertiary ,Procollagen peptidase ,Collagen, type I, alpha 1 ,medicine.anatomical_structure ,Biochemistry ,030220 oncology & carcinogenesis ,Protein Multimerization ,Intracellular - Abstract
The C propeptides of fibrillar procollagens have crucial roles in tissue growth and repair by controlling both the intracellular assembly of procollagen molecules and the extracellular assembly of collagen fibrils. Mutations in C propeptides are associated with several, often lethal, genetic disorders affecting bone, cartilage, blood vessels and skin. Here we report the crystal structure of a C-propeptide domain from human procollagen III. It reveals an exquisite structural mechanism of chain recognition during intracellular trimerization of the procollagen molecule. It also gives insights into why some types of collagen consist of three identical polypeptide chains, whereas others do not. Finally, the data show striking correlations between the sites of numerous disease-related mutations in different C-propeptide domains and the degree of phenotype severity. The results have broad implications for understanding genetic disorders of connective tissues and designing new therapeutic strategies.
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- 2016
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100. Determination of the substrate repertoire of ADAMTS2, 3, and 14 significantly broadens their functions and identifies extracellular matrix organization and TGF-β signaling as primary targets
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Edwin De Pauw, David J.S. Hulmes, Johanne Dubail, Catherine Moali, Laura Dupont, Sandrine Vadon-Le Goff, Mourad Bekhouche, Nicolas Smargiasso, Dominique Baiwir, Betty Nusgens, Frédéric Delolme, Isabelle Zanella-Cléon, Gabriel Mazzucchelli, Alain Colige, Cédric Leduc, Lauriane Janssen, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Tissulaire et d'ingénierie Thérapeutique UMR 5305 (LBTI), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Université de Liège, Laboratory of Mass Spectrometry-GIGA-Proteomics, Laboratory of Mass Spectrometry, GIGA-R, Institut de biologie et chimie des protéines [Lyon] (IBCP), Imagine - Institut des maladies génétiques (IMAGINE - U1163), Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), Physical Chemistry and Mass Spectrometry Laboratory, GIGA-Cancer (CRCE), Centre Hospitalier Universitaire de Liège (CHU-Liège), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), and Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)
- Subjects
0301 basic medicine ,Cell signaling ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Biology ,Biochemistry ,Extracellular matrix ,03 medical and health sciences ,ADAMTS Proteins ,0302 clinical medicine ,Transforming Growth Factor beta ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,[SDV.BC.IC]Life Sciences [q-bio]/Cellular Biology/Cell Behavior [q-bio.CB] ,Genetics ,Disintegrin ,Humans ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,Adaptor Proteins, Signal Transducing ,Thrombospondin ,Metalloproteinase ,ADAMTS ,Extracellular Matrix ,ADAMTS2 ,HEK293 Cells ,030104 developmental biology ,Gene Expression Regulation ,Latent TGF-beta Binding Proteins ,030220 oncology & carcinogenesis ,biology.protein ,Intercellular Signaling Peptides and Proteins ,Proteoglycans ,Chemokines ,Procollagen N-Endopeptidase ,Receptors, Transforming Growth Factor beta ,Signal Transduction ,Biotechnology ,Extracellular matrix organization - Abstract
A disintegrin and metalloproteinase with thrombospondin type I motif (ADAMTS)2, 3, and 14 are collectively named procollagen N-proteinases (pNPs) because of their specific ability to cleave the aminopropeptide of fibrillar procollagens. Several reports also indicate that they could be involved in other biological processes, such as blood coagulation, development, and male fertility, but the potential substrates associated with these activities remain unknown. Using the recently described N-terminal amine isotopic labeling of substrate approach, we analyzed the secretomes of human fibroblasts and identified 8, 17, and 22 candidate substrates for ADAMTS2, 3, and 14, respectively. Among these newly identified substrates, many are components of the extracellular matrix and/or proteins related to cell signaling such as latent TGF-β binding protein 1, TGF-β RIII, and dickkopf-related protein 3. Candidate substrates for the 3 ADAMTS have been biochemically validated in different contexts, and the implication of ADAMTS2 in the control of TGF-β activity has been further demonstrated in human fibroblasts. Finally, the cleavage site specificity was assessed showing a clear and unique preference for nonpolar or slightly hydrophobic amino acids. This work shows that the activities of the pNPs extend far beyond the classically reported processing of the aminopropeptide of fibrillar collagens and that they should now be considered as multilevel regulators of matrix deposition and remodeling.-Bekhouche, M., Leduc, C., Dupont, L., Janssen, L., Delolme, F., Vadon-Le Goff, S., Smargiasso, N., Baiwir, D., Mazzucchelli, G., Zanella-Cleon, I., Dubail, J., De Pauw, E., Nusgens, B., Hulmes, D. J. S., Moali, C., Colige, A. Determination of the substrate repertoire of ADAMTS2, 3, and 14 significantly broadens their functions and identifies extracellular matrix organization and TGF-β signaling as primary targets.
- Published
- 2016
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