51. Molecular profiling of stem cell-like female germ line cells in Drosophila delineates networks important for stemness and differentiation
- Author
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Gunter Meister, Manu D. Tiwari, Andreas Wodarz, and Daniela M. Zeitler
- Subjects
Cell division ,QH301-705.5 ,Science ,Gene regulatory network ,rip-seq ,RNA-Seq ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Germline ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,stem cells ,Gene expression ,Biology (General) ,Tissue homeostasis ,030304 developmental biology ,0303 health sciences ,drosophila ,Cell biology ,rna-seq ,Drosophila ,RIP-seq ,RNA-seq ,Stem cells ,Stem cell ,General Agricultural and Biological Sciences ,transcriptome ,030217 neurology & neurosurgery - Abstract
Stem cells can self-renew and also produce daughter cells destined for differentiation. The precise control of the balance between these two outcomes is essential to ensure tissue homeostasis and to prevent uncontrolled proliferation resulting in tumor formation. As self-renewal and differentiation are likely to be controlled by different gene expression programs, unraveling the underlying gene regulatory networks is crucial for understanding the molecular logic of this system. In this study, we have characterized by next generation RNA sequencing (RNA-seq) the transcriptome of germline stem cell (GSC)-like cells isolated from bag of marbles (bam) mutant Drosophila ovaries and compared it to the transcriptome of germ line cells isolated from wild type ovaries. We have complemented this dataset by utilizing an RNA-immunoprecipitation strategy to identify transcripts bound to the master differentiation factor Bam. Protein complex enrichment analysis on these combined datasets allows us to delineate known and novel networks essential for GSC maintenance and differentiation. Further comparative transcriptomics illustrates similarities between GSCs and primordial germ cells and provides a molecular footprint of the stem cell state. Our study represents a useful resource for functional studies on stem cell maintenance and differentiation.
- Published
- 2019