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51. A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone

52. Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Prediction

53. Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study

54. Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

56. Virus Detection and Identification in Minutes Using Single-Particle Imaging and Deep Learning

57. Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination and Drug Susceptibility Prediction

60. Reply to Mills and Linkin

64. Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission

68. The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis

72. Penicillin Binding Protein Substitutions Co-occur with Fluoroquinolone Resistance in ‘Epidemic’ Lineages of Multi Drug-Resistant Clostridioides difficile

73. Whole-genome sequencing for surveillance of tuberculosis drug resistance and determination of resistance level in China

74. Identifying Bacterial Airways Infection in Stable Severe Asthma Using Oxford Nanopore Sequencing Technologies

75. Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection

76. The bacteriology of pleural infection (TORPIDS): an exploratory metagenomics analysis through next generation sequencing

80. Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing

86. Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

88. Rapid turnaround multiplex sequencing of SARS-CoV-2: comparing tiling amplicon protocol performance

89. Changes in paediatric respiratory infections at a UK teaching hospital 2016–2021; impact of the SARS-CoV-2 pandemic

90. Changes in Serogroup and Genotype Prevalence Among Carried Meningococci in the United Kingdom During Vaccine Implementation

91. Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

92. Impact of Meningococcal Serogroup C Conjugate Vaccines on Carriage and Herd Immunity

97. Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study

98. Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

100. Changes in paediatric respiratory infections at a UK teaching hospital 2016-2021; impact of the SARS-CoV-2 pandemic

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