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The deterioration of coral reefs in Japan is a serious environmental problem. Conventional conservation policies for terrestrial ecosystems are sometimes difficult to apply to coral reef protection because of the large number of stakeholders involved. In what seems to be an interesting attempt to solve this problem, tourist divers in Okinawa, Japan have begun to transplant coral fragments onto deteriorated coral reefs, by participating in a tour provided by diving shops. However, the problem here is that when the transplanted fragments have been taken out from the natural coral colonies, it tends to cause a host of potential problems such as decreasing fecundity of donor colonies, negative effects on the surrounding environment of the exploited corals and low species diversity of transplanted fragments. In this paper, we examine the merits of commercial coral transplantation in marine ecosystem conservation, and to suggest some reforms that could help to mitigate the problems encountered when using sexually propagated coral transplants. Finally, we discuss how the commercial transplantation in Okinawa could be applied to the conservation of other marine ecosystem.

Authors' contributions This work was carried out in collaboration between all authors. Author NN design the study, wrote the protocol and first draft processed of the manuscript all the data, interpreted the results, and wrote the manuscript. Authors TK and HY managed the analysis of the study and gave a number of suggestions that significantly improved the paper. Authors CR and GA performed the statistical analysis and identified a coral species. Author MAAS managed the literature search. All authors read and approved the final manuscript. Article Information ABSTRACT Ecologically, coral reef has a function to protect the others component of marine and coastal ecosystem from pressure of wave and storm. If compared with the other ecosystems, coral reef that are most easily destroyed. Spermonde archipelago consist of more than one hundred small islands, which have the higher potential ecosystem especially of coral reef distribution. It is very influencing and provide higher contributes to the preservation of society, where most livelihoods depend on its shallow water and has high growing human activity. Remote Sensing technologies is an alternative to support the availability of spatial information resources, such as coral reefs in the large area. Original Research Article

The Caribbean has seen a dramatic loss of coral over the last 30 years due to direct and indirect anthropogenic factors, causing a decrease in reef three-dimensional complexity and fish abundance and diversity. Restoration practices, such as outplanting coral colonies onto degraded reefs, are increasingly used to revive reef ecosystems to preserve fisheries, tourism, and ecosystem functions, which are currently valued at $375 billion globally. However, few studies have examined whether coral restoration and the consequent addition of structural complexity can restore reef ecosystems. Thus, this study aims to better understand early fish community dynamics following restoration using Acropora cervicornis, a major reef building coral and focus species for restoration that has experienced a greater than 80% drop in cover since 1980. To examine fish dynamics after restoration, surveys of fish, environmental conditions, benthic seafloor characteristics, and rugosity were conducted on outplanted plots and control plots without outplants. Surveys were conducted off the north shore of St. Croix, USVI (17°46′15.0″N, 64°49′03.8″W) from May 30, 2016 to August 4, 2016, and on December 28, 2016, and January 4, 2017. Within a week of outplanting, fish abundance was significantly higher in experimental plots compared to controls. After outplanting, there was also an increase in fish species richness and a significant shift in fish community composition over time. These results demonstrate the early stages of fish colonization after outplanting A. cervicornis, providing insight into how restoration can cause rapid change in fish abundance, richness, and community composition.

Coral reefs are among Earth’s best-studied ecosystems, yet the degree to which large predators influence the ecology of coral reefs remains an open and contentious question. Recent studies indicate the consumptive effects of large reef predators are too diffuse to elicit trophic cascades. Here, we provide evidence that such predators can produce non-consumptive (fear) effects that flow through herbivores to shape the distribution of seaweed on a coral reef. This trophic cascade emerged because reef topography, tidal oscillations, and shark hunting behaviour interact to create predictable “hot spots” of fear on the reef where herbivores withhold feeding and seaweeds gain a spatial refuge. Thus, in risky habitats, sharks can exert strong ecological impacts even though they are trophic generalists that rarely feed. These findings contextualize the debate over whether predators influence coral reef structure and function and move us to ask not if, but under what specific conditions, they generate trophic cascades.

Mass bleaching and subsequent mortality of scleractinian corals in response to elevated seawater temperatures has been considered as one of the most impacts of global climate change. Three extensive coral bleaching events in the Andaman Sea were reported, in the years 1991, 1995 and 2010. Studies on survival of coral colonies, coral recruitment and community structure of coral reef associated macrofauna would predict the trends for coral recovery from the impacts of coral bleaching events. The present study aimed to examine the status of coral communities, density of coral recruits and coral reef associated macrofauna at nearshore coral reefs in Phangnga Province, the Andaman Sea following the 2010 coral bleaching event. The dead coral cover was high (>50%) while the live coral cover was in the range of 13-21%. There was high diversity of coral recruits on natural substrates. The average densities of macrobenthic fauna varied from 1.9 to 2.6 individuals.m-2, with significant differences among study sites. The dominant macrobenthic species were a soft coral (Lobophytum sp.), a sea star (Linckia laevigata) and a sea urchin (Echinostrephus molaris). Coral recovery at these coral reefs would be possible but local anthropogenic stressors must be overwhelmingly reduced in order to enhance coral reef resilience. The long-term monitoring programs in the Andaman Sea are required for decision makers to support their adaptive management approaches.

Aim: There is global consensus that marine protected areas offer a plethora of benefits to the biodiversity within and around them. Nevertheless, many organisms threatened by human impacts also find shelter in unexpected or informally protected places. For coral reef organisms, refuges can be tourist resorts implementing local environment-friendly bottom-up management strategies. We used the coral reef ecosystem as a model to test whether such practices have positive effects on the biodiversity associated with de facto protected areas. Location: North Ari Atoll, Maldives. Methods: We modelled the effects of the environment and three human management regimes (tourist resorts, uninhabited and local community islands) on the abundance and diversity of echinoderms and commercially important fish species, the per cent cover of reef benthic organisms (corals, calcareous coralline algae, turf and macroalgae) and the proportion of coral disease. We used multivariate techniques to assess the differences between reef components among the management regimes. Results: Reefs varied between the management regimes. A positive “resort effect” was found on sessile benthic organisms, with good coral cover and significantly less algae at resort islands. Corals were larger and had fewer diseases in uninhabited islands. Minor “resort effect” was detected on motile species represented by commercial fish and echinoderms. Main conclusions: In countries where natural biodiversity strongly sustains the tourist sector and where local populations rely on natural resources, a balance between tourism development, local extraction practices and biodiversity conservation is necessary. The presence of eco-friendly managed resorts, which practices would need to be certified on the long term, is beneficial to protect certain organisms. House reefs around resorts could therefore provide areas adding to existing marine protected areas, while marine protection efforts in local community islands should focus on improving fishing management.

Coral reefs are one of the most biologically diverse and environmentally sensitive ecosystems. Climate change and rising sea temperatures have been identified as one of the biggest threats to coral reefs, compounding existing pressures cause by anthropogenic influences such as overfishing and pollution. Identifying reef habitats and coral species that are more tolerant of such stresses is therefore important in conserving overall coral reef diversity and biomass. Recent coral bleaching events induced by elevated sea temperatures have resulted in unprecedented coral mortality across the world. However some reefs and coral species have withstood bleaching better than others. Similarly, recovery after mass mortality events has been patchy and resulted in phase shifts in species composition. Understanding such dynamics as well as environmental and physical variables affecting reef resilience and recovery is key to effective management of coral reefs and associated biota. Incorporating resilience parameters into adaptive management strategies is now considered an important aspect of Marine Protected Area management. Coral reef research in Sri Lanka has for a large part been isolated and lacking long term monitoring and time series data. In addition, management has been reactive and often static rather than predictive and adaptive. Key aspects of reef resilience and its importance in management strategies will be discussed in this presentation. Keywords: Coral reef, Climate change, Reef resilience

Coral reefs supply millions of people with ecosystem goods and services, especially those living along tropical coastlines. Unfortunately, these ecosystems are disappearing at an alarming pace. In the Caribbean, the rate of coral loss is high (5.5 – 9.2% per year) and constant. In 2013, a healthy coral reef was discovered in one of the least expected places within the Colombian Caribbean: at the entrance of Cartagena Bay, a highly-polluted system that receives industrial and sewage waste, as well as high sediment and freshwater loads from an outlet of the Magdalena River (the longest and most populated river basin in Colombia). Here we provide the first characterization of Varadero Reef’s geomorphology and biological diversity. We also compare these characteristics with those of a nearby reference reef, Barú Reef, located in an area much less influenced by the described polluted system. Below the murky waters, we found high coral cover of 45.1% (± 3.9; up to 80% in some sectors), three species of lobster, eight of sea urchin, a fish community composed by 61 species from 24 families, and the typical zonation of a Caribbean fringing reef. All attributes found correspond to a reef that, according to current standards should be considered in "good condition". Current plans to dredge part of Varadero threaten the survival of this reef and could hinder efforts to uncover the underpinnings of this reef’s remarkable resilience. There is, therefore, an urgent need to describe the location and characteristics of Varadero as a first step towards gaining acknowledgement of its existence and garnering inherent legal and environmental protections.

Sustainable fisheries management is key to restoring and maintaining ecological function and benefits to people, but it requires accurate information about patterns in resource use, particularly fishing pressure. In most coral reef fisheries and other data-poor contexts, obtaining such information is challenging and remains an impediment to effective management. We developed the most comprehensive regional view of shore-based fishing effort and catch for the Hawaiian Islands to show detailed fishing patterns from across the main Hawaiian Islands (MHI). We reveal these regional patterns through fisher “creel” surveys conducted through collaborative efforts by local communities, state agencies, academics, and environmental organizations, at 18 sites and comprising >10,000 hr of monitoring across a range of habitats and human influences throughout the MHI. Here, we document spatial patterns in nearshore fisheries catch, effort, catch rates (i.e., catch-per-unit-effort [CPUE]), and catch disposition (i.e., use of fish after catch is landed). Line fishing was consistently the most commonly employed gear type (94%), followed by net fishing. The most efficient gear types (i.e., higher CPUE) were spear (0.64 kg hr-1), followed closely by net (0.61 kg hr-1), with CPUE for line (0.16 kg hr-1) 3.9 times lower than spear and 3.7 times lower than net. Creel surveys also reveal rampant illegal fishing activity across the studied locations. Surprisingly, overall, most of the catch was not sold, but rather retained for home consumption or given away to extended family, which indicates that cultural and food security may be stronger drivers of fishing effort than commercial exploitation for nearshore coral reef fisheries in Hawai‘i. Increased monitoring of spatial patterns in nearshore fisheries can inform targeted management, in order to maintain these fisheries for local communities’ food security, cultural, and ecological value.

Coral restoration in the Caribbean was brought into sharp focus in 2005 when reefs throughout the region were severely impacted by a mass coral bleaching event, triggered by prolonged exposure to above normal water temperatures. The goal of outplanting has primarily been to establish enough colonies from a variety of different genotypes to enhance the potential for sexual reproduction and recruitment and/or increasing the species cover on recipient reefs. Active coral restoration is one important component that should be considered for any coral conservation programme. To that end coral restoration, particularly gardening has proved to be an effective way to engage and educate the public, creating support for parallel conservation measures and increasing the likelihood of their success. Communication plans should be inclusive of all facets of the community. Each member of the community can become an ambassador for coral reef restoration and conservation and support action towards improving the health of the natural resources.

Over half of all scleractinian coral species inhabit ocean depths greater than 50 m, some of which are capable of constructing reefs tens of kilometers long and hundreds of meters high. The biodiversity of life found on these cold-water coral reefs is astounding yet remarkable since, in contrast to the photic and mesophotic zones, so few coral species actually create a framework matrix at these depths. In light of rapid climate change and unprecedented rates of anthropogenic disturbance, it is urgent we understand how biodiversity in the depths of our oceans is coupled to the persistence of these habitats. We provide a synthetic overview of animal biodiversity associated with major reef framework-forming species, discussing this with respect to global trends in species diversity, composition, and regional species pools, large knowledge gaps, and also the frontiers in technology that cold-water coral science is adopting to help address these gaps.

Bioerosion, the weakening and erosion of hard substrates by boring, etching, and grazing organisms, is a major structuring force on coral reefs of the Eastern Tropical Pacific (ETP). Bioerosional processes are the main source of reef erosion, and facilitate recycling of reefal carbonate. In healthy reefs, a dynamic balance exists between destructive (i.e. bioerosion) and constructive (i.e. bioaccretion) processes, allowing for maintenance and growth of reef frameworks. In changing environments, however, bioerosion rates can exceed those of coral calcification, leading to reduced reef development and the destruction of reef frameworks. In the ETP, high rates of bioerosion are promoted by nutrient-rich upwelling and high primary productivity conditions, recurrent coral bleaching and mortality events, and a chemical environment characterized by high-pCO2 and low aragonite saturation state. Here we examine bioerosion in ETP coral habitats and the variable roles of reef-dwelling bioeroder taxa: microbial euendoliths (microendoliths), sponges, polychaetes, sipunculans, crustaceans, molluscs, echinoids, and reef fishes. Among these agents of bioerosion, sponges, sipunculans, bivalves, and echinoderms have been relatively well studied in this region, while information is currently lacking or limited for microendolith assemblages, polychaetes and reef fishes. The frequency of coral invasion by clionaid sponges (e.g., Cliona vermifera and Thoosa mismalolli) is variable between ETP coral habitats. Dense boring sponge assemblages can lead to high rates of carbonate losses exceeding those of bioaccretion. Boring bivalves (i.e., species of Lithophaga and Gastrochaena) are very abundant on many actively accreting reefs and are generally more prominent contributors to reef erosion in the ETP than in other regions. Sea urchins are by far the most destructive grazers of coral substrates in habitats where abundant. Following ENSO-associated coral mortality events, intense bioerosion by sea urchins has impeded coral recovery and compromised reef health at many eastern Pacific sites. This chapter reviews factors important in ETP bioerosion, and current knowledge of bioeroder populations in the region. Consejo Nacional de Ciencia y Tecnología de Mexico/[2008-102239]/CONACYT/México UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigación en Ciencias del Mar y Limnología (CIMAR)

The Indo-Pacific is home to Earth’s most biodiverse coral reefs. Diversity on these reefs decreases from the Coral Triangle east through the islands of Melanesia. Despite this pattern having been identified during the early 20th century, our knowledge about the interaction between pattern and process remains incomplete. To evaluate the structure of coral reef fish communities across Melanesia, we obtained distributional records for 396 reef fish species in five taxa across seven countries. We used hierarchical clustering, nestedness, and multiple linear regression analyses to evaluate the community structure. We also compiled data on life history traits (pelagic larval duration, body size and schooling behavior) to help elucidate the ecological mechanisms behind community structure. Species richness for these taxa along the gradient was significantly related to longitude but not habitat area. Communities are significantly nested, indicating that species-poor communities are largely composed of subsets of the species found on species rich reefs. These trends are robust across taxonomic groups except for the Pomacentridae, which exhibit an anti-nested pattern, perhaps due to a large number of endemic species. Correlations between life history traits and the number of reefs on which species occurred indicate that dispersal and survival ability contribute to determining community structure. We conclude that distance from the Coral Triangle dominates community structure in reef fish; however, conservation of the most species-rich areas will not be sufficient alone to conserve the vivid splendor of this region.

The Philippines being a tropical archipelago with an estimated 27,000 square kilometers of coral reefs has too few trained specialists who can monitor, study, and promote measures to conserve its vast marine resources. Bringing specialists to survey a site comes at a cost while survey equipment can hardly be afforded by low-income municipalities or schools. In this paper I review a suite of coral reef assessment and visualization solutions we designed for low-cost, monitoring of the shallow marine environment either for resource management or for basic research.

Anthropogenic pressures are increasing and induce more frequent and stronger disturbances on ecosystems especially on coral reefs which is one of the most diverse on Earth. Long-term data series are increasingly needed to understand and evaluate the consequences of such pressures on ecosystems. This 30-years monitoring program allowed a description of the ability of the coral reef of Tiahura (French Polynesia) to recover after two main coral cover declines, due to Acanthaster planci outbreaks. The study is divided in two distinct periods framing the drop of coral cover and analyze the reaction of two herbivorous family: Acanthuridae and Scarinae. First we compared the successive roles they played in the herbivorous community, then we evaluated the changes in species composition that occurred for both Acanthuridae and Scarinae between these two periods. The long-term study of this coral reef ecosystem provided a valuable study case of the resilience over 30 years.

International audience; With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals-with different traits and life histories-continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

SUMMARYCoral reefs and their societal benefits are in decline, chiefly due to overfishing, pollution and inappropriate coastal development. Strengthened management is possible, but collective failure to build the needed political will to act diminishes lives of millions of people along tropical coasts. Political will can be built, but it requires committed leadership and sustained investment of time and resources. Accepting failure as inevitable is inappropriate.

This study examined the changes in community composition of reef fishes by experimentally manipulating the availability of shelter provided by tabular structures on a mid-shelf reef on the Great Barrier Reef. At locations where access to tabular corals (Acropora hyacinthus and Acropora cytherea) was excluded, a rapid and sustained reduction in the abundance of large reef fishes occurred. At locations where tabular structure was added, the abundance and diversity of large reef fishes increased and the abundance of small reef fishes tended to decrease, although over a longer time frame. Based on their response to changes in the availability of tabular structures, nine families of large reef fishes were separated into three categories; designated as obligate, facultative or non-structure users. This relationship may relate to the particular ecological demands of each family, including avoidance of predation and ultraviolet radiation, access to feeding areas and reef navigation. This study highlights the importance of tabular corals for large reef fishes in shallow reef environments and provides a possible mechanism for local changes in the abundance of reef fishes following loss of structural complexity on coral reefs. Keystone structures have a distinct structure and disproportionate effect on their ecosystem relative to their abundance, as such the result of this study suggests tabular corals may constitute keystone structures on shallow coral reefs.

Quantifying the distribution and habitat use of sharks is critical for understanding their ecological role and for establishing appropriate conservation and management regimes. On coral reefs, particularly the Great Barrier Reef (GBR), little is known regarding the distribution of sharks across major reef habitat types. In this study, we surveyed shark populations across outer-shelf reefs of the GBR in order to determine the diversity, abundance, and distribution of reef sharks across three major coral reef habitats: (1) the reef slope, (2) the back reef and (3) the reef flat. Model selection revealed that habitat was the principal factor influencing shark distribution and abundance. Specifically, overall shark abundance and diversity were significantly higher on the reef slope (and to a lesser degree, the back reef) than the reef flat. This confirms that shark populations are not homogeneously distributed across coral reefs. Thus, the results presented herein have important implications for shark population assessments. In addition, our results highlight the potential importance of the reef slope, with high levels of live coral cover and structural complexity, for sustaining reef shark populations. As this habitat is highly susceptible to disturbance events, this study provides a useful context for predicting and understanding how environmental degradation may influence reef shark populations in the future.

Marine biological diversity in the South China Sea is immensely rich, with at least 3,365 species of marine fishes, more than one-third of these are coral reef fish. Understanding the present status of coral reef fishes in the South China Sea in terms of their biodiversity and abundance is therefore important for the sustainable use of coral reef resources in the future. This paper is an overview of the diversity, species composition and species richness of coral reef fishes in the Malaysian South China Sea. A number of coral reef fishes consisting of 35 families and 86 species have been categorised as extinct or threatened. Natural and anthropogenic factors are affecting coral reefs and their ecosystems, with overfishing, blast fishing, poison fishing and trawling considered the major threats in Malaysia. In the Malaysian South China Sea, blast fishing is still practiced in Sabah, East Malaysia (Borneo), and the activity is considered a serious issue. A number of coral reefs are protected as national marine parks, especially in West Malaysia (Peninsular Malaysia), which could help maintain the biomass of coral reef fishes. Strict enforcement of fishery regulations and management, and more national marine parks are needed to conserve and enhance coral reef fishes, especially in the Sabah area of East Malaysia.

Coral reefs are of great socio-economic and cultural importance for many coastal communities across the tropics, yet little is known about people’s local classification and their social and ecological relationship with these habitats. In the case of island peoples, coral reefs are more than just resource exploitation areas, but are also geomorphologic features that allow or bar people from navigating, markers that define property rights of the seascape in relation to other coastal and terrestrial habitats, and cultural and historical features that embody tribal identity and ideology. Building upon over two decades of research, this paper uses published and unpublished data to describe people’s ecological and socio-economic relationships with coral reefs in two extensive lagoon ecosystems in the Western Solomon Islands. It combines ecological, geospatial, and ethnographic data to analyse the dominant characteristics of coral reef habitats in the region, the prevalent environmental phenomena associated with reefs and their transformation, the productive practices exerted in these habitats by the local inhabitants, and the socio-cultural meaning of coral reefs for lagoon peoples from the standpoint of local ecological knowledge. Understanding people’s classification and socio-economic and cultural use of coral reefs is not just a descriptive effort. Rather, it is an essential step toward understanding human–environmental relationships theoretically and creating comprehensive base resource maps for planning marine and terrestrial conservation including marine protected areas (MPAs) and ecosystems-based management (EBM) plans that potentially can enhance people’s livelihood resilience.

Global climate change is rapidly altering disturbance regimes in many ecosystems including coral reefs, yet the long-term impacts of these changes on ecosystem structure and function are difficult to predict. A major ecosystem service provided by coral reefs is the provisioning of physical habitat for other organisms, and consequently, many of the effects of climate change on coral reefs will be mediated by their impacts on habitat structure. Therefore, there is an urgent need to understand the independent and combined effects of coral mortality and loss of physical habitat on reef-associated biota. Here, we use a unique series of events affecting the coral reefs around the Pacific island of Moorea, French Polynesia to differentiate between the impacts of coral mortality and the degradation of physical habitat on the structure of reef fish communities. We found that, by removing large amounts of physical habitat, a tropical cyclone had larger impacts on reef fish communities than an outbreak of coral-eating sea stars that caused widespread coral mortality but left the physical structure intact. In addition, the impacts of declining structural complexity on reef fish assemblages accelerated as structure became increasingly rare. Structure provided by dead coral colonies can take up to decades to erode following coral mortality, and, consequently, our results suggest that predictions based on short-term studies are likely to grossly underestimate the long-term impacts of coral decline on reef fish communities.

Effective management of highly biodiverse and threatened reefs requires the identification of human activities driving declines on the particular reef to be managed. The island nation of the Comoros is a model setting to investigate effects of human activities on diverse and threatened coral reefs, with abundant and diverse marine life, local dependence on reef resources, and a variety of anthropogenic pressures on reefs rendering the nation vulnerable to coral reef degradation. Using data from 21 sites throughout the Comoros, we evaluated the relative influence of human activities and other natural and anthropogenic factors on benthic cover and fish richness, abundance, and biomass with the goal of providing prioritized management targets. Human activities including fishing, beach sand extraction, and beachfront housing and development had the strongest relationship with degraded reefs but with some seasonal fluctuation, while geographic patterns most consistently predicted reef degradation across seasons. Comparing analyses conducted with and without human activities as predictors, the inclusion of human activities greatly improved explanatory power. Baseline data on reef biotic composition and localized anthropogenic impacts, monitoring over time, and controlled experiments can facilitate an adaptive management approach for protecting fragile reef ecosystems in the Comoros and elsewhere.

The coral reefs worldwide are exposed to multiple anthropogenic threats and persisting global change impacts, causing continuous degradation, also calling for the development of novel restoration methodologies. Of the most promising emerging approaches, deriving its rationale from silviculture, is the low-cost ‘gardening concept’, guided by a two-step restoration operation: (a) mid-water nursery phase, where coral-nubbins are farmed and (b) transplantation of nursery-farmed colonies. Tested worldwide, at least 86 coral-species and over 100 000 colonies were successfully farmed in different archetype nurseries, and several novel transplantation methodologies were developed. A number of unanticipated emerged outcomes were the immediate establishment of coral infaunal biodiversity in nurseries, the development of nurseries into ‘larval dispersion hubs’ and the enhanced reproduction of transplanted coral colonies. Altogether, and in addition to envisaged results (e.g., high survivorship, fast coral growth), results attest that the gardening-toolbox could serve as a ubiquitous ecological engineering platform for restoration on a global scale.

The natural resilience of coral reefs and their ability to resist and recover from disturbance may be supported by managing user access, including regulating the anchoring of vessels. The process of targeting site-based local management actions and evaluating success is central to the adaptive management process. We describe an example of such a process from Keppel Bay in the southern Great Barrier Reef. No-anchoring areas were selected based on evidence of severe anchor damage relative to other sites. The four locations selected are areas of high visitation where interpretive signage and the effort to support reef resilience create additional benefits of community outreach. Surveys indicate reduced anchor damage inside all four no-anchoring areas from similar to 80 instances per 1000 m(2) in 2008 to fewer than ten in 2012. Anchor damage also declined between 2010 and 2012 at three of the four control reefs near the no-anchoring areas. This case study is unique and foundational in that this was the first time that supporting reef resilience was explicitly used as the motivation for local-scale management in the Great Barrier Reef. Follow-up engagement with community and stakeholder groups suggests the process has led to an increase in reef awareness and stewardship.

Shellfish reef restoration to support ecological services has become more common in recent decades, driven by increasing awareness of the functional decline of shellfish systems. Maximizing restoration benefits and increasing efficiency of shellfish restoration activities would greatly benefit from understanding and measurement of system responses to management activities. This project (1) compiles a database of northern Gulf of Mexico inshore artificial oyster reefs created for restoration purposes, and (2) quantitatively assesses a subset of reefs to determine project outcomes. We documented 259 artificial inshore reefs created for ecological restoration. Information on reef material, reef design and monitoring was located for 94, 43 and 20% of the reefs identified. To quantify restoration success, we used diver surveys to quantitatively sample oyster density and substrate volume of 11 created reefs across the coast (7 with rock; 4 with shell), paired with 7 historic reefs. Reefs were defined as fully successful if there were live oysters, and partially successful if there was hard substrate. Of these created reefs, 73% were fully successful, while 82% were partially successful. These data highlight that critical information related to reef design, cost, and success remain difficult to find and are generally inaccessible or lost, ultimately hindering efforts to maximize restoration success rates. Maintenance of reef creation information data, development of standard reef performance measures, and inclusion of material and reef design testing within reef creation projects would be highly beneficial in implementing adaptive management. Adaptive management protocols seek specifically to maximize short and long-term restoration success, but are critically dependent on tracking and measuring system responses to management activities. Published by Elsevier Ltd.

Coral reef communities face unprecedented pressures at local, regional and global scales as a consequence of climate change and anthropogenic disturbance. Remote sensing, from satellites or aircraft, is possibly the only means to measure the effects of such stresses at appropriately large spatial scales. In the past 30 years, remote sensing of coral reefs has made rapid progress. However, the current technology is still not mature enough to monitor complicated coral reef ecosystems. Compared with foreign research in this field, our work lags far behind. There are still deficiencies in many aspects, such as basic data collection, theoretical research and platform construction. In our nation, it is even unclear how coral reefs disperse and where they may be unhealthy. In this paper, general characteristics of coral reef ecosystems and spectral features of different reef benthos have been summarized, based initially on a review of relevant literature in recent years. Based on the spectral separability of different reef types or benthos, remote sensing can be used to monitor two aspects of coral reefs: (1) Measurement of the ecological properties of reefs. (2) Health assessment of the coral reef ecosystem. In the first part, optical remote sensing methods are widely used to map reef geomorphology and habitats or biotopes. The investigation of geomorphologic zonation has proven to be one of the most successful applications, as different geomorphologic zones are associated with characteristic benthic community structures and occur at spatial scales of tens to hundreds of meters, they are amenable to remote detection by moderate to high resolution sensors. With more and more attention on the ecological problems of coral reefs, a number of studies have used high resolution sensors to map reef communities. The number of classes distinguishable depends on many factors, including the platforms, resolution (spectral, spatial and temporal resolution) and environmental conditions (water depth, water clarity, surface roughness, etc.). Compared with deep water color remote sensing, or terrestrial remote sensing, three techniques for the measurement of reef ecological properties are examined in this paper: (1) Coral reef classification system using remote sensing. (2) Techniques of sea surface correction and water column correction. (3) Techniques of coral reef information extraction from images. In terms of the complexity of coral reef ecosystems, the current techniques still need further improvement or optimization. In the health assessment of coral reef ecosystems, there are two ways to carry out the monitoring using remote sensing: (1) Monitoring the pigment or symbiotic zooxanthellae contents in corals. (2) Measuring the environmental properties of reefs. The first way is theoretically feasible, but difficult to achieve in practice. Currently, most reef health assessments are carried out by measuring environmental parameters, including sea surface temperature, solar radiation, ultraviolet radiation, water color, wind speed and direction, rainfall, ocean acidification, sea level, etc., of which sea surface temperature has been routinely measured by NOAA to monitor coral bleaching. In addition to the contents above, this article puts forward five main prospects for development in the future: (1) Establishment of a coral reef classification system using remote sensing. (2) Satellite launch for monitoring coral reefs. (3) Theoretical and methodological development. (4) Establishment of a spectral database for different reef benthos. (5) Integrated application of multi-source remote sensing data. It is hoped that the information provided here will be a reference for subsequent similar studies.

Coral reefs are the most biological systems productive and versatile on the surface of the planet earth, which is a source with economic and social, returns great for the country that God-given this natural wealth. Egypt is home to some of the most spectacular coral reefs and associated marine life in the world. Egypt has enacted laws and takes effective measures for the protection and management of coral reefs and associated ecosystems in the Red Sea and its Gulf to characterize these areas of the richness and diversity of coral reef environment is scarce to be repeated elsewhere in the world. The largest sub-sector for the Egyptian tourism market is the coastal tourism. Coastal tourism depends largely on intact reefs, and this is also one of the most important causes of reef degradation in Egypt. Over the last two decades live coral cover has declined in Egypt. Egyptian Environmental Affairs Agency (EEAA) implements its own methodology to estimate the coral reefs impacts as a result of the destruction of coral reefs due to ship aground or anchorage. This paper focuses on and presents the modelling of the destruction of coral reefs as a result of the collision and the ship ground damage assessment in case of oil spills in Egyptian coastal water referring to the EEAA methodology applied in Egypt.

Coral reefs are highly productive ecosystems that provide various valuable ecosystem services. The worldwide decline in coral cover and the expected increase of hurricane frequencies and sea level rise have raised the attention to one ecosystem service in particular. This is the coastal protection service of coral reefs, which is based on the principle that reefs dissipate wave energy by wave breaking or friction by reef structures and thus protecting coastal assets against floods. There have been several regional and local studies on economic value of coastal protection of coral reefs, each of which adopted simplifying assumptions on critical parameters such as reef and wave characteristics, climate and coastal development. The main objective of this paper is to develop a comprehensive analytical framework for spatial assessment and valuation of coastal protection services by coral reefs. The analytical framework is tested in the context of the United States Virgin Islands. The study is innovative because several aspects are explicitly integrated in the conceptual framework such as flood insurance rate maps (FIRMs), reef typology, a wave model and the depth-damage model. The coastal protection value of coral reef ecosystems in the USVI is estimated at an annual value of 1.2M USD attributed to friction of coral structures. © 2014 Elsevier Ltd.

Human stresses on coral reefs have increased to levels threatening their existence on a global scale. In the Gulf of Aqaba, many coastal coral reefs have been damaged by human activities, while many others are threatened. To mitigate such negative impacts, we have constructed a state-of-the-art artificial reef and deployed it in the Gulf of Aqaba in December 2008. After 3.5 years, the data obtained have shown extensive coral recruitment rates on the deployed artificial reef. This was suggested to be due to the high structural complexity of the new AR design. The newly created habitat is expected to protect the natural reefs by reducing pressure on them. This strategy is expected not only to be of environmental value to the marine ecosystem, but also to enhance eco-tourism in the local community. Based on the results obtained, it is highly recommended to use artificial reefs for restoration purposes.

Coral reef science has grown exponentially in recent decades in the Gulf. Analysis of literature from 1950 to 2012 identified 270 publications on coral reefs in the Gulf, half of which were published in just the past decade. This paper summarizes the growth and evolution of coral reef science in the Gulf by examining when, where and how research has been conducted on Gulf reefs, who conducted that research, and what themes and taxa have dominated scientific interest. The results demonstrate that there has been significant growth in our understanding of the valuable coral reefs of the Gulf, but also highlight the fact that we are documenting an increasingly degraded ecosystem. Reef scientists must make a concerted effort to improve dialogue with regional reef management and decision-makers if we are to stem the tide of decline in coral reefs in the Gulf.

The Red Sea has long been recognized as a region of high biodiversity and endemism. Despite this diversity and early history of scientific work, our understanding of the ecology of coral reefs in the Red Sea has lagged behind that of other large coral reef systems. We carried out a quantitative assessment of ISI-listed research published from the Red Sea in eight specific topics (apex predators, connectivity, coral bleaching, coral reproductive biology, herbivory, marine protected areas, non-coral invertebrates and reef-associated bacteria) and compared the amount of research conducted in the Red Sea to that from Australia’s Great Barrier Reef (GBR) and the Caribbean. On average, for these eight topics, the Red Sea had 1/6th the amount of research compared to the GBR and about 1/8th the amount of the Caribbean. Further, more than 50 % of the published research from the Red Sea originated from the Gulf of Aqaba, a small area (

We provide a case study to demonstrate how a key ecosystem function of coral reefs (habitat provision) co-benefits both sharks and humans. Spawning grounds of the blackmouth catshark Galeus melastomus were discovered using seabed and video surveys on the Mingulay Reef Complex, a seascape of cold-water coral reefs off western Scotland. Spawning habitats were environmentally similar across years. Shark abundance of G. melastomus, a species valued by the recreational sea angling industry, was significantly higher nearer reef habitats. Our case study demonstrates how a local coral vulnerable marine ecosystem (VME) helps maintain key life stages of shark populations and provides socioeconomic benefits. Evidence for co-benefits between corals, sharks and humans provides a compelling case for identifying and protecting coral VMEs.

Coral reefs around the world are facing serious threats. These fragile ecosystems are in need for conservation. The coastal state of Bahia hosts the most extensive and richest area of coral reefs in the South Atlantic Ocean. Assessment, planning and management of coral reef ecosystems are particularly challenging tasks. This work shows how the creation of a GIS improves the process of management, monitoring and conservation of the Bahian reef environments The initial data input started by the vectorization of 1) bathymetric data from the Bureau of Hydrography and Navigation (DHN), 2) shoreline and mangrove areas from Landsat 7 ETM + images, 3) near surface reefs from Quickbird images, and 4) coastal and marine protected areas of federal, state and local administrations. Geological, physical, biological and social information was then included in order to create a suitable marine GIS for conservation aims. The data includes information on sediment granulometry and transport patterns, rocky substrate outcrops, sea surface temperature, wave direction, rain precipitation, major contributing river discharge, artisanal fishery, benthic cover and bleaching data. ReefBahia GIS has provided essential information for a better understanding of coral reefs of the state of Bahia geological and ecological characteristics such as mapping, representation, connectivity and biodiversity of coral reefs, geological facies, Quaternary sedimentation, numeric modeling of wave refraction and monitoring of bleaching events.

Harris, D.L. and Vila-Concejo, A., 2013. Wave transformation on a coral reef rubble platform Wave transformation across coral reef platforms is the primary process affecting changes in coral reef geomorphology. Transformation regulates the amount of wave energy entering reef systems, however there have been relatively few hydrodynamic assessments conducted on coral reefs when compared to siliciclastic environments with the effects of common geomorphic features like rubble platforms on wave transformation never specifically examined. This study focuses on the changes in wave characteristics across a rubble platform in a high energy environment (One Tree Reef, southern Great Barrier Reef). Wave conditions were measured at five locations over two days along a cross-reef transect from the reef rim to lagoon. Most of the wave energy was dissipated during wave breaking with energy attenuation due to bottom friction a secondary process. Wave energy attenuation was between 60–99% of the offshore wave con...

Knowledge of factors that are important in coral reef growth help us to understand how reef ecosystems react following major environmental disturbances due to climate change and other anthropogenic effects. This study shows that despite a range of anthropogenic stressors, corals on the fringing reefs south of Kingston harbour, as well as corals on fringing reefs on the north coast of Jamaica near Discovery Bay can survive and grow. Skewness values for Sidastrea siderea and Porites astreoides were positive (0.85 - 1.64) for all sites, implying more small colonies than large colonies. Coral growth rates are part of a demographic approach to monitoring coral reef health in times of climate change, and linear extension rates (mm·yr −1 ) of Acropora palmata branching corals at Dairy Bull, Rio Bueno, and Pear Tree Bottom on the north coast of Jamaica were c. 50 - 90 mm·year −1 from 2005-2012. The range of small-scale rugosities at the Port Royal cay sites studied was lower than that at the Discovery Bay sites; for example Rio Bueno was 1.05 ± 0.15 and Dairy Bull the most rugose at 2.3 ± 0.16. Diary Bull reef has for several years been the fringing reef with the most coral cover, with a benthic community similar to that of the 1970s. We discuss whether Jamaica can learn from methods used in other Caribbean countries to better protect its coral reefs against climate change. Establishing and maintaining fully-protected marine parks in Jamaica and elsewhere in the Caribbean is one tool to help the future of the fishing industry in developing countries. Developing MPAs as part of an overall climate change policy for a country may be the best way of integrating climate change into MPA planning, management, and evaluation.

Raja Ampat archipelago is located in the heart of the Coral Triangle and its surrounding seas hold a variety of coral species. However, the absence of appropriate management of Raja Ampat’s marine ...

New surveys of the Kimberley Nearshore Bioregion are beginning to fill knowledge gaps about the region’s marine biodiversity and the national and international conservation significance of this little-known tropical reef system. Here we report the recent finding of two unique coral habitats documented at Adele Island and Long Reef during theWoodside 2009/2010 Collection Projectsurveys. Firstly, we report the finding of a subtidal zone of mixed corallith and rhodolith habitat which appears on current records, to be unprecedented in Australia. Secondly, we report the discovery of an atypical Organ Pipe Coral habitat zone and provide empirical evidence that this commercially valuable species reaches an unparalleled level of benthic cover. We provide additional details about the wider hard and soft coral assemblages associated with these unique habitats; discuss the potential biological causes and consequences of them, and make recommendations to benefit their conservation.