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557 results on '"Carpenter, Eric"'

51. Hope Is an Arrow: The Story of Lebanese American Poet Kahlil Gibran

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

* Hope Is an Arrow: The Story of Lebanese American Poet Kahlil Gibran by Cory McCarthy; illus. by Ekua Holmes Primary Candlewick 40 pp. g 6/22 978-1-5362-0032-4 $18.99 In this [...]

Published
2022

52. Diving Deep: Using Machines to Explore the Ocean

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Diving Deep: Using Machines to Explore the Ocean by Michelle Cusolito; illus. by Nicole Wong Primary, Intermediate Charlesbridge 32 pp. g 6/22 978-1-62354-293-1 $17.99 In a follow-up to the pair's [...]

Published
2022

53. Hidden Killers and Imagined Saints: Why Courts Fail to Identify Unconstitutional Jurors in Death Penalty Cases

Author

Carpenter, Eric

Subjects
FOS: Law, Law
Abstract

What if half of the people in the jury pool for a capital case are unqualified to sit—and the lawyers are not accurately identifying and removing them? And what if the lawyers are actually identifying the wrong people as unqualified and removing them instead? This appears to be the case. The Constitution prohibits jurors who will always (or never) vote to impose the death penalty. As developed in this Article, the existing social science suggests that 5– 30% of potential jurors may be automatic death penalty (ADP) voters and between 2–34% may be automatic life sentence (ALS) voters. Further, lawyers are not accurately identifying them. Researchers have surveyed jurors who sat in capital cases and found that a stunning 14–57% were ADP voters, while 2–7% were ALS voters. Meanwhile, qualified venirepersons are being tossed out. Researchers have found that 60–65% of those classified as ALS could vote for death in some circumstances, and at trial, this would result in the exclusion of life-leaning venirepersons. The high rate of improperly included ADP voters along with the high rate of improperly excluded lifeleaning voters stacks the jury pool against the defendant. This unfair and unreliable process calls into question whether the death penalty is constitutional as applied.

Published
2022
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54. Except Antarctica!

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Except Antarctica! by Todd Sturgell; illus. by the author Primary Sourcebooks eXplore 40 pp. g 7/21 978-1-7282-3326-0 $17.99 Sturgell introduces readers to a headstrong turtle who, upon learning that turtles [...]

Published
2021

55. Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation

Author

Jovel, Juan, primary, Nimaga, Aissata, additional, Jordan, Tracy, additional, O’Keefe, Sandra, additional, Patterson, Jordan, additional, Thiesen, Aducio, additional, Hotte, Naomi, additional, Bording-Jorgensen, Michael, additional, Subedi, Sudip, additional, Hamilton, Jessica, additional, Carpenter, Eric J., additional, Lauga, Béatrice, additional, Elahi, Shokrollah, additional, Madsen, Karen L., additional, Wong, Gane Ka-Shu, additional, and Mason, Andrew L., additional

Published
2022
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58. A Shot in the Arm!

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

A Shot in the Arm! [Big Ideas That Changed the World] by Don Brown; illus. by the author Intermediate, Middle School Amulet/Abrams 144 pp. g 3/21 978-1-4197-5001-4 $13.99 e-book ed. [...]

Published
2021

59. Mammoth Science: The Big Ideas That Explain Our World

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Mammoth Science: The Big Ideas That Explain Our World by David Macaulay; illus. by the author Intermediate DK 160 pp. g 8/20 978-1-4654-9146-6 $19.99 A unique and amusing encyclopedia of [...]

Published
2021

61. Genetically Encoded, Multivalent Liquid Glycan Array (LiGA)

Author

Sojitra, Mirat, Sarkar, Susmita, Maghera, Jasmine, Rodrigues, Emily, Carpenter, Eric, Seth, Shaurya, Vinals, Daniel Ferrer, Bennett, Nicholas, Reddy, Revathi, Khalil, Amira, Xue, Xiaochao, Bell, Michael, Zheng, Ruixiang Blake, Zhang, Ping, Nycholat, Corwin, Bailey, Justin J., Ling, Chang-Chun, Lowary, Todd L., Paulson, James C., Macauley, Matthew S., and Derda, Ratmir

Subjects
carbohydrates (lipids), Mice, Bacterial Proteins, Polysaccharides, viruses, Animals, Microarray Analysis, Article, Bacteriophage M13
Abstract

The Central Dogma of Biology does not allow for the study of glycans using DNA sequencing. We report a “Liquid Glycan Array” (LiGA) platform comprising a library of DNA ‘barcoded’ M13 virions that display 30–1500 copies of glycans per phage. A LiGA is synthesized by acylation of phage pVIII protein with a dibenzocyclooctyne, followed by ligation of azido-modified glycans. Pulldown of the LiGA with lectins followed by deep sequencing of the barcodes in the bound phage decodes the optimal structure and density of the recognized glycans. The LiGA is target agnostic and can measure the glycan-binding profile of lectins such as CD22 on cells in vitro and immune cells in a live mouse. From a mixture of multivalent glycan probes, LiGAs identifies the glycoconjugates with optimal avidity necessary for binding to lectins on living cells in vitro and in vivo; measurements that cannot be performed with canonical glass slide-based glycan arrays.

Published
2021

62. Cation and Anion Channelrhodopsins: Sequence Motifs and Taxonomic Distribution

Author

Govorunova, Elena G., primary, Sineshchekov, Oleg A., additional, Li, Hai, additional, Wang, Yumei, additional, Brown, Leonid S., additional, Palmateer, Alyssa, additional, Melkonian, Michael, additional, Cheng, Shifeng, additional, Carpenter, Eric, additional, Patterson, Jordan, additional, Wong, Gane K.-S., additional, and Spudich, John L., additional

Published
2021
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63. Black Heroes of the Wild West

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Black Heroes of the Wild West [Toon Graphic] by James Otis Smith; illus. by the author Intermed late, Mid die School TOON 60 pp. g 9/20 978-1-943?45-5?-5 $16.95 Papered. 978-1-943145-52-2 [...]

Published
2020

64. Your Place in the Universe

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

* Your Place in the Universe by Jason Chin; illus. by the author Primary, Intermediate Porter/Holiday 40 pp. g 9/20 978-0-8234-4623-0 $18.99 e-book ed. 978-0-8234-4878-4 $11.99 The relative sizes of [...]

Published
2020

65. Dark Was the Night

Author

Carpenter, Eric

Subjects
Voyager 1 (Space probe), Literature/writing, Publishing industry
Abstract

Dark Was the Night by Gary Golio; illus. by E. B. Lewis Primary, Intermediate Paulsen/Penguin 32 pp. g 8/20 978-1-5247-3888-4 $17.99 e-book ed. 978-1-5247-3889-1 $10.99 Little is known about the [...]

Published
2020

67. Hidden Killers and Imagined Saints: Why Courts Fail to Identify Unconstitutional Jurors in Death Penalty Cases

Author

Carpenter, Eric R. and Carpenter, Eric R.

Abstract

What if half of the people in the jury pool for a capital case are unqualified to sit—and the lawyers are not accurately identifying and removing them? And what if the lawyers are actually identifying the wrong people as unqualified and removing them instead? This appears to be the case. The Constitution prohibits jurors who will always (or never) vote to impose the death penalty. As developed in this Article, the existing social science suggests that 5– 30% of potential jurors may be automatic death penalty (ADP) voters and between 2–34% may be automatic life sentence (ALS) voters. Further, lawyers are not accurately identifying them. Researchers have surveyed jurors who sat in capital cases and found that a stunning 14–57% were ADP voters, while 2–7% were ALS voters. Meanwhile, qualified venirepersons are being tossed out. Researchers have found that 60–65% of those classified as ALS could vote for death in some circumstances, and at trial, this would result in the exclusion of life-leaning venirepersons. The high rate of improperly included ADP voters along with the high rate of improperly excluded lifeleaning voters stacks the jury pool against the defendant. This unfair and unreliable process calls into question whether the death penalty is constitutional as applied. What can we do about it? This Article draws on the social sciences to show that there are two likely sources for this inaccuracy. First, potential jurors make it through the selection process because lawyers ask questions that invoke social desirability bias. This means that the potential jurors answer in ways that will portray themselves in the best possible light, even if that answer does not reflect what they really feel. Next, the lawyers fail to define “capital murder” when questioning potential jurors. The lawyers do not specify that “capital murder,” in most jurisdictions, is willful, deliberate, premeditated murder. Potential jurors who are ADP may be thinking, “Well, I would vote for life

Published
2021

68. The Message: The Extraordinary Journey of an Ordinary Text Message

Author

Carpenter, Eric

Subjects
Text messaging, Text messaging, Literature/writing, Publishing industry
Abstract

* The Message: The Extraordinary Journey of an Ordinary Text Message by Michael Emberley; illus. by the author Primary, Intermediate Dlouhy/Atheneum 48 pp. g 10/21 978-1-5344-5290-9 $17.99 e-booked. 978-1-5344-5291-6 $10.99 [...]

Published
2021

71. Editor's pick.

Author

Hind, Richard, Martins, Emma, Hinwood, Jon, Sawers, Geoff, Hughes-Games, William, Haller, Ben, Edge, Sam, Whiteley, Paul, Parrish, Colin, Kingston, Averell, and Carpenter, Eric

Subjects
OCEAN energy resources, COASTAL engineering, PLANT ecology, ALMOND, WASTE heat
Abstract

However, regarding the puzzle posed at the beginning - that people who listened to a debate between the US presidential nominees Richard Nixon and John F. Kennedy felt Nixon won it, whereas those who watched felt Kennedy won - there may be an explanation other than the power of gestures: Kennedy was far better-looking. Views Your letters Maybe it is time to ditch the smartphone 26 August, p 32 From Richard Hind, Chapel Haddlesey, North Yorkshire, UK When people ask me (usually in a shocked tone) why I don't carry a smartphone, I answer, half-joking, "because I teach cybersecurity". On the dilemma of crops that use a lot of water 26 August, p 36 From Averell Kingston, Sutton under Brailes, Warwickshire, UK Graham Lawton mentions foods that use most water. [Extracted from the article]

Published
2023

72. Race Through the Skies: The Week the World Learned to Fly

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Race Through the Skies: The Week the World Learned to Fly by Martin W. Sandler Middle School Bloomsbury 185 pp. g 7/20 978-1-5476-0344-2 $24.99 The rate of innovation during the [...]

Published
2020

73. Whoo-Ku Haiku: A Great Horned Owl Story

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

* Whoo-Ku Haiku: A Great Horned Owl Story by Maria Gianferrari; illus. by Jonathan Voss Primary Putnam 32 pp. g 3/20 978-0-399-54842-0 $16.99 e-book ed. 978-0-399-54843-7 $9.99 Readers follow a [...]

Published
2020

74. Run: Book One

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

* Run: Book One by John Lewis and Andrew Aydin; illus. by L. Fury with Nate Powell Middle School, High School Good Trouble Productions/ComicArts/Abrams 160 pp. g 8/21 978-1-4197-3069-6 $24.99 [...]

Published
2021

76. Tubulin electrostatics and isotype specific drug binding

Author

Tuszynski, Jack A., Malinski, Wojtek, Carpenter, Eric J., Luchko, Tyler, Huzil, J. Torin, and Ludena, Richard F.

Subjects
Electronic structure -- Evaluation -- Research, Molecular dynamics -- Research, Atomic structure -- Evaluation -- Research, Electrostatics -- Research, Terpenes -- Properties -- Evaluation, Colchicine -- Properties -- Evaluation -- Research, Tubulins -- Properties -- Research, Physics, Evaluation, Research, Properties
Abstract

Abstract: We present the results of molecular dynamics computations based on the atomic structures of tubulin. The values of the net charge, the spatial charge distributions, and the dipole moment [...]

Published
2008

80. Seven Voyages: How China's Treasure Fleet Conquered the Sea

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Seven Voyages: How China's Treasure Fleet Conquered the Sea by Laurence Bergreen and Sara Fray Intermediate, Middle School Roaring Brook 176 pp. g 1/21 978-1-62672-122-7 $19.99 e-book ed. 978-1-62672-123-4 $10.99 [...]

Published
2021

81. HIDDEN KILLERS AND IMAGINED SAINTS: WHY COURTS FAIL TO IDENTIFY UNCONSTITUTIONAL JURORS IN DEATH PENALTY CASES.

Author

Carpenter, Eric R.

Subjects
JURORS, CAPITAL punishment, JURY selection, LAWYERS, LIFE sentences, SOCIAL desirability, SOCIAL sciences
Abstract

What if half of the people in the jury pool for a capital case are unqualified to sit--and the lawyers are not accurately identifying and removing them? And what if the lawyers are actually identifying the wrong people as unqualified and removing them instead? This appears to be the case. The Constitution prohibits jurors who will always (or never) vote to impose the death penalty. As developed in this Article, the existing social science suggests that 5-30% of potential jurors may be automatic death penalty (ADP) voters and between 2-34% may be automatic life sentence (ALS) voters. Further, lawyers are not accurately identifying them. Researchers have surveyed jurors who sat in capital cases and found that a stunning 14-57% were ADP voters, while 2-7% were ALS voters. Meanwhile, qualified venirepersons are being tossed out. Researchers have found that 60-65% of those classified as ALS could vote for death in some circumstances, and at trial, this would result in the exclusion of life-leaning venirepersons. The high rate of improperly included ADP voters along with the high rate of improperly excluded lifeleaning voters stacks the jury pool against the defendant. This unfair and unreliable process calls into question whether the death penalty is constitutional as applied. What can we do about it? This Article draws on the social sciences to show that there are two likely sources for this inaccuracy. First, potential jurors make it through the selection process because lawyers ask questions that invoke social desirability bias. This means that the potential jurors answer in ways that will portray themselves in the best possible light, even if that answer does not reflect what they really feel. Next, the lawyers fail to define "capital murder" when questioning potential jurors. The lawyers do not specify that "capital murder," in most jurisdictions, is willful, deliberate, premeditated murder. Potential jurors who are ADP may be thinking, "Well, I would vote for life if the defendant didn't mean to kill the victim; or the killing was an accident; or was in self-defense; or the defendant was adequately provoked; or the defendant was insane." They think they can vote for life in some circumstances--but under those circumstances, the defendant would not be death-eligible. This Article then provides suggestions for addressing these two sources of error. [ABSTRACT FROM AUTHOR]

Published
2022

83. Meltdown: Earthquake, Tsunami, and Nuclear Disaster in Fukushima

Author

Carpenter, Eric

Subjects
Earthquakes -- Japan, Nuclear accidents, Literature/writing, Publishing industry
Abstract

* Meltdown: Earthquake, Tsunami, and Nuclear Disaster in Fukushima by Deirdre Langeland Middle School, High School Roaring Brook 208 pp. g 2/21 978-1-62672-700-7 $19.99 e-book ed. 978-1-62672-699-4 $10.99 In time [...]

Published
2021

84. Alien Nation

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

by Sandro Bassi; illus. by the author Primary, Intermediate Levine Querido 56 pp. g 4/21 978-1-64614-038-1 $18.99 Venezuelan artist Bassi's picture-book debut features various aliens as characters--but whether a character [...]

Published
2021

85. Strongman: The Rise of Five Dictators and the Fall of Democracy

Author

Carpenter, Eric

Subjects
Literature/writing, Publishing industry
Abstract

Strongman: The Rise of Five Dictators and the Fall of Democracy by Kenneth C. Davis High School Holt 272 pp. g 10/20 978-1-250-20564-3 $19.99 e-book ed. 978-1-250-20565-0 $9.99 After a [...]

Published
2021

86. Rethinking voir dire

Author

Carpenter, Eric R.

Subjects
Law, Military and naval science
Abstract

Basics Before we decide what we should do during this first phase of the trial, we should define it and give it a proper label. Voir dire is a terrible [...]

Published
2012

87. Genetically Encoded, Multivalent Liquid Glycan Array (LiGA)

Author

Sojitra, Mirat, primary, Sarkar, Susmita, additional, Maghera, Jasmine, additional, Rodrigues, Emily, additional, Carpenter, Eric, additional, Seth, Shaurya, additional, Vinals, Daniel Ferrer, additional, Bennett, Nicholas, additional, Reddy, Revathi, additional, Khalil, Amira, additional, Xue, Xiaochao, additional, Bell, Michael, additional, Zheng, Ruixiang Blake, additional, Zhang, Ping, additional, Nycholat, Corwin, additional, Ling, Chang-Chun, additional, Lowary, Todd L., additional, Paulson, James C., additional, Macauley, Matthew S., additional, and Derda, Ratmir, additional

Published
2020
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88. An overview of the capital jury project for military justice practitioners: aggravation, mitigation, and admission defenses

Author

Carpenter, Eric R.

Subjects
Extenuating circumstances -- Laws, regulations and rules, Evidence (Law) -- Military aspects, Courts-martial and courts of inquiry -- Laws, regulations and rules, Capital punishment -- Laws, regulations and rules, Defense (Criminal procedure) -- Management, Government regulation, Company business management, Law, Military and naval science
Abstract

Introduction What themes drive a juror's decision to vote for life or death in a capital case? For a judge advocate assigned to a capital case, the answer to that [...]

Published
2011

89. An overview of the capital jury project for military justice practitioners: jury dynamics, juror confusion, and juror responsibility

Author

Carpenter, Eric R.

Subjects
Courts-martial and courts of inquiry -- Laws, regulations and rules, Capital punishment -- Laws, regulations and rules, Right to trial by jury -- Laws, regulations and rules, Government regulation, Law, Military and naval science
Abstract

Introduction What exactly happens in the deliberation room of a capital trial? What are the jurors thinking and how are they acting as they make their decisions? Do they act [...]

Published
2011

90. Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

Author

Carpenter, Eric J, primary, Matasci, Naim, additional, Ayyampalayam, Saravanaraj, additional, Wu, Shuangxiu, additional, Sun, Jing, additional, Yu, Jun, additional, Jimenez Vieira, Fabio Rocha, additional, Bowler, Chris, additional, Dorrell, Richard G, additional, Gitzendanner, Matthew A, additional, Li, Ling, additional, Du, Wensi, additional, K. Ullrich, Kristian, additional, Wickett, Norman J, additional, Barkmann, Todd J, additional, Barker, Michael S, additional, Leebens-Mack, James H, additional, and Wong, Gane Ka-Shu, additional

Published
2019
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91. Simplifying discovery and production: using easy frameworks to evaluate the 2009 term of cases

Author

Carpenter, Eric

Subjects
Evidence, Expert -- Laws, regulations and rules, Courts-martial and courts of inquiry -- Laws, regulations and rules, Appellate procedure -- Laws, regulations and rules, Discovery (Law) -- Laws, regulations and rules, Government regulation, Law, Military and naval science
Abstract

The Basics Discovery and production rules are fairly simple--if you can distinguish one from the other, which is not always an easy task. For example, depending on where you are [...]

Published
2011

92. Spencer's New Pet

Author

Carpenter, Eric

Subjects
Spencer's New Pet (Picture story) -- Sima, Jessie -- Book reviews, Books -- Book reviews, Literature/writing, Publishing industry
Abstract

Spencer's New Pet by Jessie Sima; illus. by the author Primary Simon 56 pp. 8/19 978-1-5344-1877-6 $17.99 e-book ed. 978-1-5344-1878-3 $10.99 A wordless picture-book ode to black-and-white silent film comedies [...]

Published
2019

93. My Teacher Is a Robot

Author

Carpenter, Eric

Subjects
My Teacher Is a Robot (Picture story) -- Brown, Jeffrey -- Book reviews, Literature/writing, Publishing industry
Abstract

My Teacher Is a Robot by Jeffrey Brown; illus. by the author Primary Crown 40 pp. (g) 6/19 978-0-553-53451-1 $17.99 Library ed. 978-0-553-53452-8 $20.99 e-book ed. 978-0-553-53453-5 $10.99 Known for [...]

Published
2019

94. Two Roads

Author

Carpenter, Eric

Subjects
Two Roads (Novel) -- Bruchac, Joseph -- Book reviews, Literature/writing, Publishing industry
Abstract

* Two Roads by Joseph Bruchac Intermediate, Middle School Dial 336 pp. g 10/18 978-0-7352-2886-3 $16.99 Abenaki author and storyteller Bruchac (Code Talkers; Talking Leaves, rev. 7/16) crafts an emotional [...]

Published
2018

96. One thousand plant transcriptomes and the phylogenomics of green plants

Author

Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valerie, Caicedo, Ana L., Cannon, Steven B., Cebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis, Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Veronica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, Garcia, Nicolas, Gateble, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Von Konrat, Matt, Konyves, Kalman, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., Nelson, Matthew N., Peng, Yanhui, Ralph, Paula, Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Schlosser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, A. Jonathan, Shaw, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Stewart, C. Neal, Jr., Stinchcombe, John R., Szovenyi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff, Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Chase, Mark W., Pires, J. Chris, Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nguyen, Nam-Phuong, Matasci, Naim, Nelson, David R., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Gramzow, Lydia, Theissen, Gunter, Wong, Gane Ka-Shu, Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valerie, Caicedo, Ana L., Cannon, Steven B., Cebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis, Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Veronica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, Garcia, Nicolas, Gateble, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Von Konrat, Matt, Konyves, Kalman, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., Nelson, Matthew N., Peng, Yanhui, Ralph, Paula, Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Schlosser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, A. Jonathan, Shaw, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Stewart, C. Neal, Jr., Stinchcombe, John R., Szovenyi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff, Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Chase, Mark W., Pires, J. Chris, Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nguyen, Nam-Phuong, Matasci, Naim, Nelson, David R., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Gramzow, Lydia, Theissen, Gunter, and Wong, Gane Ka-Shu

Abstract

Green plants (Viridiplantae) include around 450,000-500,000 species(1,2) of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we sequenced the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta). Our analysis provides a robust phylogenomic framework for examining the evolution of green plants. Most inferred species relationships are well supported across multiple species tree and supermatrix analyses, but discordance among plastid and nuclear gene trees at a few important nodes highlights the complexity of plant genome evolution, including polyploidy, periods of rapid speciation, and extinction. Incomplete sorting of ancestral variation, polyploidization and massive expansions of gene families punctuate the evolutionary history of green plants. Notably, we find that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns. The increasing availability of high-quality plant genome sequences and advances in functional genomics are enabling research on genome evolution across the green tree of life.

Published
2019
Full Text
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97. One thousand plant transcriptomes and the phylogenomics of green plants

Author

School of Plant and Environmental Sciences, Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valerie, Caicedo, Ana L., Cannon, Steven B., Cebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis, Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Veronica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, Garcia, Nicolas, Gateble, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Von Konrat, Matt, Konyves, Kalman, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., Nelson, Matthew N., Peng, Yanhui, Ralph, Paula E., Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Schlosser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, A. Jonathan, Shaw, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Stewart, C. Neal, Jr., Stinchcombe, John R., Szovenyi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff, Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Chase, Mark W., Pires, J. Chris, Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nam-Phuong Nguyen, Matasci, Naim, Nelson, David R., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Gramzow, Lydia, Theissen, Gunter, Wong, Gane Ka-Shu, School of Plant and Environmental Sciences, Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valerie, Caicedo, Ana L., Cannon, Steven B., Cebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis, Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Veronica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, Garcia, Nicolas, Gateble, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Von Konrat, Matt, Konyves, Kalman, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., Nelson, Matthew N., Peng, Yanhui, Ralph, Paula E., Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Schlosser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, A. Jonathan, Shaw, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Stewart, C. Neal, Jr., Stinchcombe, John R., Szovenyi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff, Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Chase, Mark W., Pires, J. Chris, Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nam-Phuong Nguyen, Matasci, Naim, Nelson, David R., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Gramzow, Lydia, Theissen, Gunter, and Wong, Gane Ka-Shu

Abstract

Green plants (Viridiplantae) include around 450,000-500,000 species(1,2) of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we sequenced the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta). Our analysis provides a robust phylogenomic framework for examining the evolution of green plants. Most inferred species relationships are well supported across multiple species tree and supermatrix analyses, but discordance among plastid and nuclear gene trees at a few important nodes highlights the complexity of plant genome evolution, including polyploidy, periods of rapid speciation, and extinction. Incomplete sorting of ancestral variation, polyploidization and massive expansions of gene families punctuate the evolutionary history of green plants. Notably, we find that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns. The increasing availability of high-quality plant genome sequences and advances in functional genomics are enabling research on genome evolution across the green tree of life.

Published
2019

98. One thousand plant transcriptomes and the phylogenomics of green plants

Author

National Key Research and Development Program (China), Ministry of Science and Technology of the People's Republic of China, Leebens-Mack, James H., Barker, M. S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse,Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Nelson, Matthew N., Peng, Yanhui, Ralph, Paula, Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Quint, Marcel, Schlösser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, Jonathan, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Rensing, Stefan A., Stewart Jr, Neal, Stinchcombe, John R., Szövényi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Soltis, Douglas E., Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff , Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Pires, J. Chris, Soltis, Pamela S., Chase, Mark W., Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Stevenson, Dennis W., Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Ullrich, Kristian K., Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nguyen, Nam-phuong, Matasci, Naim, Nelson, David R., Wickett, Norman J., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., DeGironimo, Lisa, Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Edger, Patrick P., Gramzow, Lydia, Theißen, Günter, Wong, Gane Ka-Shu, Jordon-Thaden, Ingrid E., Joya. Steve, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valérie, Caicedo, Ana L., Cannon, Steven B., Çebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis,Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Verónica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, García, Nicolás, Gâteblé, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Konrat, Matt von, Könyves, Kálmán, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., National Key Research and Development Program (China), Ministry of Science and Technology of the People's Republic of China, Leebens-Mack, James H., Barker, M. S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse,Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Nelson, Matthew N., Peng, Yanhui, Ralph, Paula, Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Quint, Marcel, Schlösser, Eva-Marie, Sederoff, Heike, Servick, Stein, Sessa, Emily B., Shaw, Jonathan, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Rensing, Stefan A., Stewart Jr, Neal, Stinchcombe, John R., Szövényi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Soltis, Douglas E., Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff , Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Pires, J. Chris, Soltis, Pamela S., Chase, Mark W., Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Stevenson, Dennis W., Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Ullrich, Kristian K., Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Nguyen, Nam-phuong, Matasci, Naim, Nelson, David R., Wickett, Norman J., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., DeGironimo, Lisa, Kong, Hanghui, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Edger, Patrick P., Gramzow, Lydia, Theißen, Günter, Wong, Gane Ka-Shu, Jordon-Thaden, Ingrid E., Joya. Steve, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valérie, Caicedo, Ana L., Cannon, Steven B., Çebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis,Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Verónica S., Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, García, Nicolás, Gâteblé, Gildas, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Konrat, Matt von, Könyves, Kálmán, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., and Miller, Richard E.

Abstract

Green plants (Viridiplantae) include around 450,000–500,000 species of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we sequenced the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta). Our analysis provides a robust phylogenomic framework for examining the evolution of green plants. Most inferred species relationships are well supported across multiple species tree and supermatrix analyses, but discordance among plastid and nuclear gene trees at a few important nodes highlights the complexity of plant genome evolution, including polyploidy, periods of rapid speciation, and extinction. Incomplete sorting of ancestral variation, polyploidization and massive expansions of gene families punctuate the evolutionary history of green plants. Notably, we find that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns. The increasing availability of high-quality plant genome sequences and advances in functional genomics are enabling research on genome evolution across the green tree of life.

Published
2019

99. An Integrated Approach to Defending Those with Mental Health Conditions

Author

Carpenter, Eric R. and Carpenter, Eric R.

Abstract

When mental health professionals first begin working with a military population, they may quickly notice that the military justice system is uniquely challenged by servicemembers who have mental health problems. Unlike the civilian justice system, where those with serious mental health problems frequently cycle in and out of the criminal courts, such cases are relatively rare in the military system. Compared with the civilian population, the military population is relatively healthy: The military screens its incoming population, which tends to reduce the percentage of people who have very serious mental health problems. One outgrowth of this is that although mental health professionals in the civilian justice system gain experience dealing with the seriously mentally ill, those in the military justice system do not tend to have that depth of experience. People in the civilian system with milder forms of mental illness may never interact with the criminal justice system. Their illness may manifest in behaviors that are not criminal. For example, if they show up late to work (or not at all) because they have a hard time getting out of bed, they might lose their job-but they will not go to trial. If their illness manifests in behaviors that are criminal, such as using cocaine or marijuana to self-medicate, they may never be caught, and even if they are, law enforcement may not be interested in spending taxpayer money prosecuting their cases., https://ecollections.law.fiu.edu/faculty_books/1245/thumbnail.jpg

Published
2019

100. In Harms's Way: The Sinking of the USS Indianapolis and the Extraordinary Story of Its Survivors.

Author

Carpenter, Eric R.

Subjects
In Harms's Way: The Sinking of the USS Indianapolis and the Extraordinary Story of Its Survivors (Book) -- Stanton, Doug, Books -- Book reviews
Abstract

On July 30, 1945, just days before the end of World War II, a Japanese submarine sank the USS Indianapolis, directly killing 300 of the ship's 1200-man crew. (3) Nine-hundred [...]

Published
2005

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