639 results on '"Bedoya, Gabriel"'
Search Results
52. Protein Predictive Modeling and Simulation of Mutations of Presenilin-1 Familial Alzheimer’s Disease on the Orthosteric Site
- Author
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Soto-Ospina, Alejandro, primary, Araque Marín, Pedronel, additional, Bedoya, Gabriel, additional, Sepulveda-Falla, Diego, additional, and Villegas Lanau, Andrés, additional
- Published
- 2021
- Full Text
- View/download PDF
53. Ancestral diversity improves discovery and fine-mapping of genetic loci for anthropometric traits - the Hispanic/Latino Anthropometry Consortium
- Author
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Fernández-Rhodes, Lindsay, primary, Graff, Mariaelisa, additional, Buchanan, Victoria L., additional, Justice, Anne E., additional, Highland, Heather M., additional, Guo, Xiuqing, additional, Zhu, Wanying, additional, Chen, Hung-Hsin, additional, Young, Kristin L., additional, Adhikari, Kaustubh, additional, Allred, Nicholette (Palmer), additional, Below, Jennifer E., additional, Bradfield, Jonathan, additional, Pereira, Alexandre C., additional, Glover, LáShauntá, additional, Kim, Daeeun, additional, Lilly, Adam G., additional, Shrestha, Poojan, additional, Thomas, Alvin G., additional, Zhang, Xinruo, additional, Chen, Minhui, additional, Chiang, Charleston W. K., additional, Pulit, Sara, additional, Horimoto, Andrea, additional, Krieger, Jose E., additional, Guindo-Martinez, Marta, additional, Preuss, Michael, additional, Schumann, Claudia, additional, Smit, Roelof A.J., additional, Torres-Mejía, Gabriela, additional, Acuña-Alonzo, Victor, additional, Bedoya, Gabriel, additional, Bortolini, Maria-Cátira, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, González-José, Rolando, additional, Poletti, Giovanni, additional, Rothhammer, Francisco, additional, Hakonarson, Hakon, additional, Igo, Robert, additional, Adler, Sharon G, additional, Iyengar, Sudha K., additional, Nicholas, Susanne B., additional, Gogarten, Stephanie M., additional, Isasi, Carmen R., additional, Papnicolaou, George, additional, Stilp, Adrienne M., additional, Qi, Qibin, additional, Kho, Minjung, additional, Smith, Jennifer A., additional, Langfeld, Carl, additional, Wagenknecht, Lynne, additional, Mckean-Cowdin, Roberta, additional, Gao, Xiaoyi Raymond, additional, Nousome, Darryl, additional, Conti, David V., additional, Feng, Ye, additional, Allison, Matthew A., additional, Arzumanyan, Zorayr, additional, Buchanan, Thomas A., additional, Chen, Yii-Der Ida, additional, Genter, Pauline M., additional, Goodarzi, Mark O., additional, Hai, Yang, additional, Hsueh, Willa, additional, Ipp, Eli, additional, Kandeel, Fouad R., additional, Lam, Kelvin, additional, Li, Xiaohui, additional, Nadler, Jerry L., additional, Raffel, Leslie J., additional, Roll, Kaye, additional, Sandow, Kevin, additional, Tan, Jingyi, additional, Taylor, Kent D., additional, Xiang, Anny H., additional, Yao, Jie, additional, Audirac-Chalifour, Astride, additional, de Jesus Peralta Romero, Jose, additional, Hartwig, Fernando, additional, Horta, Bernando, additional, Blangero, John, additional, Curran, Joanne E., additional, Duggirala, Ravindranath, additional, Lehman, Donna E., additional, Puppala, Sobha, additional, Fejerman, Laura, additional, John, Esther, additional, Aguilar-Salinas, Carlos, additional, Burtt, Noël P., additional, Florez, Jose C., additional, García-Ortíz, Humberto, additional, González-Villalpando, Clicerio, additional, Mercader, Josep, additional, Orozco, Lorena, additional, Tusié, Teresa, additional, Blanco, Estela, additional, Gahagan, Sheila, additional, Cox, Nancy J., additional, Hanis, Craig, additional, Butte, Nancy F., additional, Cole, Shelley A., additional, Commuzzie, Anthony G., additional, Voruganti, V. Saroja, additional, Rohde, Rebecca, additional, Wang, Yujie, additional, Sofer, Tamar, additional, Ziv, Elad, additional, Grant, Struan F.A., additional, Ruiz-Linares, Andres, additional, Rotter, Jerome I., additional, Haiman, Christopher A., additional, Parra, Esteban J., additional, Cruz, Miguel, additional, Loos, Ruth J.F., additional, and North, Kari E., additional
- Published
- 2021
- Full Text
- View/download PDF
54. Frequency of Aspirin Resistance in Ischemic Stroke Patients and Healthy Controls from Colombia
- Author
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Roman-Gonzalez, Alejandro, primary, Naranjo, Carlos Andrés, additional, Cardona-Maya, Walter D., additional, Vallejo, Dionis, additional, Garcia, Francisco, additional, Franco, Cesar, additional, Alvarez, Leonor, additional, Tobón, Luis Ignacio, additional, López, Marta Ibeth, additional, Rua, Carolina, additional, Bedoya, Gabriel, additional, Cadavid, Ángela, additional, and Torres, José Domingo, additional
- Published
- 2021
- Full Text
- View/download PDF
55. NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism
- Author
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Allouche, Jennifer, Rachmin, Inbal, Adhikari, Kaustubh, Pardo, Luba M., Lee, Ju Hee, McConnell, Alicia M., Kato, Shinichiro, Fan, Shaohua, Kawakami, Akinori, Suita, Yusuke, Wakamatsu, Kazumasa, Igras, Vivien, Zhang, Jianming, Navarro, Paula P., Lugo, Camila Makhlouta, Noonan, Haley R., Christie, Kathleen A., Itin, Kaspar, Mujahid, Nisma, Lo, Jennifer A., Won, Chong Hyun, Evans, Conor L., Weng, Qing Yu, Wang, Hequn, Osseiran, Sam, Lovas, Alyssa, Németh, István, Cozzio, Antonio, Navarini, Alexander A., Hsiao, Jennifer J., Nguyen, Nhu, Kemény, Lajos V., Iliopoulos, Othon, Berking, Carola, Ruzicka, Thomas, Gonzalez-José, Rolando, Bortolini, Maria Cátira, Canizales-Quinteros, Samuel, Acuna-Alonso, Victor, Gallo, Carla, Poletti, Giovanni, Bedoya, Gabriel, Rothhammer, Francisco, Ito, Shosuke, Schiaffino, Maria Vittoria, Chao, Luke H., Kleinstiver, Benjamin P., Tishkoff, Sarah, Zon, Leonard I., Nijsten, Tamar, Ruiz-Linares, Andrés, Fisher, David E., Roider, Elisabeth, Allouche, Jennifer, Rachmin, Inbal, Adhikari, Kaustubh, Pardo, Luba M., Lee, Ju Hee, McConnell, Alicia M., Kato, Shinichiro, Fan, Shaohua, Kawakami, Akinori, Suita, Yusuke, Wakamatsu, Kazumasa, Igras, Vivien, Zhang, Jianming, Navarro, Paula P., Lugo, Camila Makhlouta, Noonan, Haley R., Christie, Kathleen A., Itin, Kaspar, Mujahid, Nisma, Lo, Jennifer A., Won, Chong Hyun, Evans, Conor L., Weng, Qing Yu, Wang, Hequn, Osseiran, Sam, Lovas, Alyssa, Németh, István, Cozzio, Antonio, Navarini, Alexander A., Hsiao, Jennifer J., Nguyen, Nhu, Kemény, Lajos V., Iliopoulos, Othon, Berking, Carola, Ruzicka, Thomas, Gonzalez-José, Rolando, Bortolini, Maria Cátira, Canizales-Quinteros, Samuel, Acuna-Alonso, Victor, Gallo, Carla, Poletti, Giovanni, Bedoya, Gabriel, Rothhammer, Francisco, Ito, Shosuke, Schiaffino, Maria Vittoria, Chao, Luke H., Kleinstiver, Benjamin P., Tishkoff, Sarah, Zon, Leonard I., Nijsten, Tamar, Ruiz-Linares, Andrés, Fisher, David E., and Roider, Elisabeth
- Abstract
Ultraviolet (UV) light and incompletely understood genetic and epigenetic variations determine skin color. Here we describe an UV- and microphthalmia-associated transcription factor (MITF)-independent mechanism of skin pigmentation. Targeting the mitochondrial redox-regulating enzyme nicotinamide nucleotide transhydrogenase (NNT) resulted in cellular redox changes that affect tyrosinase degradation. These changes regulate melanosome maturation and, consequently, eumelanin levels and pigmentation. Topical application of small-molecule inhibitors yielded skin darkening in human skin, and mice with decreased NNT function displayed increased pigmentation. Additionally, genetic modification of NNT in zebrafish alters melanocytic pigmentation. Analysis of four diverse human cohorts revealed significant associations of skin color, tanning, and sun protection use with various single-nucleotide polymorphisms within NNT. NNT levels were independent of UVB irradiation and redox modulation. Individuals with postinflammatory hyperpigmentation or lentigines displayed decreased skin NNT levels, suggesting an NNT-driven, redox-dependent pigmentation mechanism that can be targeted with NNT-modifying topical drugs for medical and cosmetic purposes.
- Published
- 2021
56. Relacion entre genotipos del grupo sanguineo Duffy e infeccion malarica en diferentes etnias de Choco-Colombia
- Author
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Gonzalez, Lina, Vega, Jorge, Ramirez, Jose L., Bedoya, Gabriel, Carmona-Fonseca, Jaime, and Maestre, Amanda
- Published
- 2012
57. Chromosome region 2p25 is linked and associated with type 1 diabetes in Colombia
- Author
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Pineda-Trujilo, Nicolas, Uribe, Federico, Montoya, Fabiola, Alfaro, Juan-Manuel, Latorre, Guillermo, Villegas, Alberto, Ceron, Javier, Perez, Andres-Felipe, Ospina, Mariano, Naranjo, Andres, Serrano, Abel, Duque, Ivan, Castrillon, Debora, Abad, Alberto, Bedoya, Gabriel, Balthazar, Vital, and Ruiz-Linares, Andres
- Published
- 2010
- Full Text
- View/download PDF
58. Genetic make up and structure of Colombian populations by means of uniparental and biparental DNA markers
- Author
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Rojas, Winston, Parra, Maria Victoria, Campo, Omer, Caro, Maria Antonieta, Lopera, Juan Guillermo, Arias, William, Duque, Constanza, Naranjo, Andres, Garcia, Jharley, Vergara, Candelaria, Lopera, Jaime, Hernandez, Erick, Valencia, Ana, Caicedo, Yuri, Cuartas, Mauricio, Gutierrez, Javier, Lopez, Sergio, Ruiz-Linares, Andres, and Bedoya, Gabriel
- Subjects
Genetic markers -- Research ,Human population genetics -- Research ,Anthropology/archeology/folklore - Abstract
Colombia is a country with great geographic heterogeneity and marked regional differences in pre-Columbian native population density and in the extent of past African and European immigration. As a result, Colombia has one of the most diverse populations in Latin America. Here we evaluated ancestry in over 1,700 individuals from 24 Colombian populations using biparental (autosomal and X-Chromosome), maternal (mtDNA), and paternal (Y-chromosome) markers. Autosomal ancestry varies markedly both within and between regions, confirming the great genetic diversity of the Colombian population. The X-chromosome, mtDNA, and Y-chromosome data indicate that there is a pattern across regions indicative of admixture involving predominantly Native American women and European and African men. Am J Phys Anthropol 143:13-20, 2010. KEY WORDS Colombia; mestizo; genetic markers; admixture DOI 10.1002/ajpa.21270
- Published
- 2010
59. Brief communication: patterns of linkage disequilibrium and haplotype diversity at Xq13 in six native American populations
- Author
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Wang, Sijia, Bedoya, Gabriel, Labuda, Damian, and Ruiz-Linares, Andres
- Subjects
Native Americans -- Genetic aspects ,Physical anthropology -- Research ,Linkage (Genetics) -- Observations ,Anthropology/archeology/folklore - Abstract
Comparative studies of linkage disequilibrium (LD) can provide insights into human demographic history. Here, we characterize LD in six Native American populations using seven microsatellite markers in Xq13, a region of the genome extensively studied in populations around the world. Native Americans show relatively low diversity and high LD, in agreement with recent genomewide survey and a scenario of sequential founder effects accompanying human population dispersal around the globe. LD in Native Americans is similar to that observed in some recently described small population isolates and higher than in large European isolates (e.g., Finns), which have been extensively analyzed in medical genetics studies. Haplotype analyses are consistent with a colonization of the New World by a differentiated East Asian population, followed by extensive genetic drift in the Americas. Am J Phys Anthropol 142:476--480, 2010. [c]2009 Wiley-Liss, Inc. KEY WORDS linkage disequilibrium; Xq13; Native Americans; haplotype DOI 10.1002/ajpa.21234
- Published
- 2010
60. Presencia de un polimorfismo de la CSP-12 relacionado con susceptibilidad a sepsis grave en una muestra de tres poblaciones colombianas
- Author
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Mejia de Los Rios, Susana Pamela, Patino Grajales, Pablo Javier, Jaimes Barragan, Fabian Alberto, Bedoya, Gabriel de Jesus, Lopez Quintero, Juan Alvaro, Camilo Arango, Julian, and Gamez Diaz, Laura Yaneth
- Published
- 2010
61. Ancient human genomes suggest three ancestral populations for present-day Europeans
- Author
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Lazaridis, Iosif, Patterson, Nick, Mittnik, Alissa, Renaud, Gabriel, Mallick, Swapan, Kirsanow, Karola, Sudmant, Peter H., Schraiber, Joshua G., Castellano, Sergi, Lipson, Mark, Berger, Bonnie, Economou, Christos, Bollongino, Ruth, Fu, Qiaomei, Bos, Kirsten I., Nordenfelt, Susanne, Li, Heng, de Filippo, Cesare, Prüfer, Kay, Sawyer, Susanna, Posth, Cosimo, Haak, Wolfgang, Hallgren, Fredrik, Fornander, Elin, Rohland, Nadin, Delsate, Dominique, Francken, Michael, Guinet, Jean-Michel, Wahl, Joachim, Ayodo, George, Babiker, Hamza A., Bailliet, Graciela, Balanovska, Elena, Balanovsky, Oleg, Barrantes, Ramiro, Bedoya, Gabriel, Ben-Ami, Haim, Bene, Judit, Berrada, Fouad, Bravi, Claudio M., Brisighelli, Francesca, Busby, George B. J., Cali, Francesco, Churnosov, Mikhail, Cole, David E. C., Corach, Daniel, Damba, Larissa, van Driem, George, Dryomov, Stanislav, Dugoujon, Jean-Michel, Fedorova, Sardana A., Gallego Romero, Irene, Gubina, Marina, Hammer, Michael, Henn, Brenna M., Hervig, Tor, Hodoglugil, Ugur, Jha, Aashish R., Karachanak-Yankova, Sena, Khusainova, Rita, Khusnutdinova, Elza, Kittles, Rick, Kivisild, Toomas, Klitz, William, Kučinskas, Vaidutis, Kushniarevich, Alena, Laredj, Leila, Litvinov, Sergey, Loukidis, Theologos, Mahley, Robert W., Melegh, Béla, Metspalu, Ene, Molina, Julio, Mountain, Joanna, Näkkäläjärvi, Klemetti, Nesheva, Desislava, Nyambo, Thomas, Osipova, Ludmila, Parik, Jüri, Platonov, Fedor, Posukh, Olga, Romano, Valentino, Rothhammer, Francisco, Rudan, Igor, Ruizbakiev, Ruslan, Sahakyan, Hovhannes, Sajantila, Antti, Salas, Antonio, Starikovskaya, Elena B., Tarekegn, Ayele, Toncheva, Draga, Turdikulova, Shahlo, Uktveryte, Ingrida, Utevska, Olga, Vasquez, René, Villena, Mercedes, Voevoda, Mikhail, Winkler, Cheryl A., Yepiskoposyan, Levon, Zalloua, Pierre, Zemunik, Tatijana, Cooper, Alan, Capelli, Cristian, Thomas, Mark G., Ruiz-Linares, Andres, Tishkoff, Sarah A., Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Comas, David, Sukernik, Rem, Metspalu, Mait, Meyer, Matthias, Eichler, Evan E., Burger, Joachim, Slatkin, Montgomery, Pääbo, Svante, Kelso, Janet, Reich, David, and Krause, Johannes
- Published
- 2014
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- View/download PDF
62. African ancestry is associated with risk of asthma and high total serum IgE in a population from the Caribbean Coast of Colombia
- Author
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Vergara, Candelaria, Caraballo, Luis, Mercado, Dilia, Jimenez, Silvia, Rojas, Winston, Rafaels, Nicholas, Hand, Tracey, Campbell, Monica, Tsai, Yuhjung J., Gao, Li, Duque, Constanza, Lopez, Sergio, Bedoya, Gabriel, Ruiz-Linares, Andrés, and Barnes, Kathleen C.
- Published
- 2009
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- View/download PDF
63. Posible implicación del gen RNASEH1 en la etiología de diabetes mellitus tipo 1
- Author
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Rodríguez, Astrid Jannet, Gutiérrez, Javier, Baltasar, Vital, Uribe, Federico, Bedoya, Gabriel, Alfaro, Juan Manuel, and Pineda-Trujillo, Nicolás
- Published
- 2009
64. Gallstones, Body Mass Index, C‐Reactive Protein, and Gallbladder Cancer: Mendelian Randomization Analysis of Chilean and European Genotype Data
- Author
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Barahona Ponce, Carol, primary, Scherer, Dominique, additional, Brinster, Regina, additional, Boekstegers, Felix, additional, Marcelain, Katherine, additional, Gárate‐Calderón, Valentina, additional, Müller, Bettina, additional, de Toro, Gonzalo, additional, Retamales, Javier, additional, Barajas, Olga, additional, Ahumada, Monica, additional, Morales, Erik, additional, Rojas, Armando, additional, Sanhueza, Verónica, additional, Loader, Denisse, additional, Rivera, María Teresa, additional, Gutiérrez, Lorena, additional, Bernal, Giuliano, additional, Ortega, Alejandro, additional, Montalvo, Domingo, additional, Portiño, Sergio, additional, Bertrán, Maria Enriqueta, additional, Gabler, Fernando, additional, Spencer, Loreto, additional, Olloquequi, Jordi, additional, Fischer, Christine, additional, Jenab, Mazda, additional, Aleksandrova, Krasimira, additional, Katzke, Verena, additional, Weiderpass, Elisabete, additional, Bonet, Catalina, additional, Moradi, Tahereh, additional, Fischer, Krista, additional, Bossers, Willem, additional, Brenner, Hermann, additional, Hveem, Kristian, additional, Eklund, Niina, additional, Völker, Uwe, additional, Waldenberger, Melanie, additional, Fuentes Guajardo, Macarena, additional, Gonzalez‐Jose, Rolando, additional, Bedoya, Gabriel, additional, Bortolini, Maria C., additional, Canizales‐Quinteros, Samuel, additional, Gallo, Carla, additional, Ruiz‐Linares, Andres, additional, Rothhammer, Francisco, additional, and Lorenzo Bermejo, Justo, additional
- Published
- 2021
- Full Text
- View/download PDF
65. Diffusion Mechanism Modeling of Metformin in Human Organic Cationic Amino Acid Transporter one and Functional Impact of S189L, R206C, and G401S Mutation
- Author
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Cano, Leydy, primary, Soto-Ospina, Alejandro, additional, Araque, Pedronel, additional, Caro-Gomez, Maria Antonieta, additional, Parra-Marin, Maria Victoria, additional, Bedoya, Gabriel, additional, and Duque, Constanza, additional
- Published
- 2021
- Full Text
- View/download PDF
66. A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation
- Author
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Bonfante, Betty, primary, Faux, Pierre, additional, Navarro, Nicolas, additional, Mendoza-Revilla, Javier, additional, Dubied, Morgane, additional, Montillot, Charlotte, additional, Wentworth, Emma, additional, Poloni, Lauriane, additional, Varón-González, Ceferino, additional, Jones, Philip, additional, Xiong, Ziyi, additional, Fuentes-Guajardo, Macarena, additional, Palmal, Sagnik, additional, Chacón-Duque, Juan Camilo, additional, Hurtado, Malena, additional, Villegas, Valeria, additional, Granja, Vanessa, additional, Jaramillo, Claudia, additional, Arias, William, additional, Barquera, Rodrigo, additional, Everardo-Martínez, Paola, additional, Sánchez-Quinto, Mirsha, additional, Gómez-Valdés, Jorge, additional, Villamil-Ramírez, Hugo, additional, Silva de Cerqueira, Caio C., additional, Hünemeier, Tábita, additional, Ramallo, Virginia, additional, Liu, Fan, additional, Weinberg, Seth M., additional, Shaffer, John R., additional, Stergiakouli, Evie, additional, Howe, Laurence J., additional, Hysi, Pirro G., additional, Spector, Timothy D., additional, Gonzalez-José, Rolando, additional, Schüler-Faccini, Lavinia, additional, Bortolini, Maria-Cátira, additional, Acuña-Alonzo, Victor, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Bedoya, Gabriel, additional, Rothhammer, Francisco, additional, Thauvin-Robinet, Christel, additional, Faivre, Laurence, additional, Costedoat, Caroline, additional, Balding, David, additional, Cox, Timothy, additional, Kayser, Manfred, additional, Duplomb, Laurence, additional, Yalcin, Binnaz, additional, Cotney, Justin, additional, Adhikari, Kaustubh, additional, and Ruiz-Linares, Andrés, additional
- Published
- 2021
- Full Text
- View/download PDF
67. A genomewide admixture map for Latino populations
- Author
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Price, Alkes L., Patterson, Nick, Fuli Yu, Menjivar, Marta, Klitz, Willaim, Henderson, Brian, Haiman, Christopher A., Winkler, Cheryl, Tusie-Luna Teresa, Ruiz-Linares, Andres, Reich, David, Cox, David R., Duque, Constanza, Villegas, Alberto, Bortolini, Maria Catira, Salzano, Francisco M., Gallo, Carla, Mazzotti, Guido, Tello-Ruiz, Marcela, Riba, Laura, Aguilar-Salinas, Carlos A., Canizales-Quinteros, Samuel, Waliszewska, Alicja, McDonald, Gavin J., Tandon, Arti, Schirmer, Christine, Neubauer, Julie, and Bedoya, Gabriel
- Subjects
Latin Americans -- Genetic aspects ,Human population genetics -- Research ,Chromosome mapping -- Research ,Biological sciences - Abstract
Multiple databases containing millions of markers were screened to identify the markers for determining the ancestry of chromosomal segments in Latino populations. Each of the 4186 markers was experimentally validated in at least 232 new Latino, European and Native American samples and a subset of 1649 markers was selected to form an admixture map.
- Published
- 2007
68. A revertant of the major founder Native American haplogroup C common in populations from Northern South America
- Author
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Torres, Maria M., Ortiz, Daniel, Bravi, Claudio M., Bedoya, Gabriel, Bortolini, Maria-Catira, Groot De Retrepo, Helena, Duque, Constanza, Ruiz-Linares, Andres, and Callegari-Jacques, Sidia
- Subjects
Native Americans -- Health aspects ,Native Americans -- Genetic aspects ,Mitochondrial DNA -- Research ,Human population genetics -- Research ,Biological sciences - Abstract
A revertant of major founder Native American haplogroup C common in populations from Northern South America is studied. Genetic structure analyses are consistent with the reversion mutation occurring at an early stage during the tribalization process.
- Published
- 2006
69. Association of variants in IL1B, TLR9, TREM1, IL10RA, and CD3G and Native American ancestry on malaria susceptibility in Colombian populations
- Author
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Mario-Vásquez, Jorge Eliécer, primary, Naranjo-González, Carlos Andrés, additional, Montiel, Jehidys, additional, Zuluaga, Lina M., additional, Vásquez, Ana M., additional, Tobón-Castaño, Alberto, additional, Bedoya, Gabriel, additional, and Segura, Cesar, additional
- Published
- 2021
- Full Text
- View/download PDF
70. Sodium-Calcium Exchanger-3 Regulates Pain ‘Wind-Up’: From Human Psychophysics to Spinal Mechanisms
- Author
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Trendafilova, Teodora, primary, Adhikari, Kaustubh, additional, Schmid, Annina B., additional, Patel, Ryan, additional, Polgár, Erika, additional, Boyle, Kieran A., additional, Dickie, Allen C., additional, Bell, Andrew M., additional, Ramirez-Aristeguieta, Luis Miguel, additional, Khoury, Samar, additional, Ivanov, Aleksandar, additional, Tseng, Mandy, additional, Wildner, Hendrik, additional, Ferris, Eleanor, additional, Chacón-Duque, Juan-Camilo, additional, Sokolow, Sophie, additional, Boghdady, Mohamed A. Saad, additional, Herchuelz, André, additional, Faux, Pierre, additional, Poletti, Giovanni, additional, Gallo, Carla, additional, Rothhammer, Francisco, additional, Bedoya, Gabriel, additional, Zeilhofer, Hanns Ulrich, additional, Diatchenko, Luda, additional, Todd, Andrew J., additional, Dickenson, Anthony H., additional, Ruiz-Linares, Andres, additional, and Bennett, David L., additional
- Published
- 2021
- Full Text
- View/download PDF
71. Prediction of Eye, Hair and Skin Color in Admixed Populations of Latin America
- Author
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Palmal, Sagnik, primary, Adhikari, Kaustubh, additional, Mendoza-Revilla, Javier, additional, Fuentes-Guajardo, Macarena, additional, de Cerqueira, Caio C. Silva, additional, Chacón-Duque, Juan Camilo, additional, Sohail, Anood, additional, Hurtado, Malena, additional, Villegas, Valeria, additional, Granja, Vanessa, additional, Jaramillo, Claudia, additional, Arias, William, additional, Lozano, Rodrigo Barquera, additional, Everardo-Martínez, Paola, additional, Gómez-Valdés, Jorge, additional, Villamil-Ramírez, Hugo, additional, Hünemeier, Tábita, additional, Ramallo, Virginia, additional, Gonzalez-José, Rolando, additional, Schüler-Faccini, Lavinia, additional, Bortolini, Maria-Cátira, additional, Acuña-Alonzo, Victor, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Bedoya, Gabriel, additional, Rothhammer, Francisco, additional, Balding, David, additional, Faux, Pierre, additional, and Ruiz-Linares, Andrés, additional
- Published
- 2020
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- View/download PDF
72. Demographic history and selection at HLA loci in Native Americans
- Author
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Single, Richard M., primary, Meyer, Diogo, additional, Nunes, Kelly, additional, Francisco, Rodrigo Santos, additional, Hünemeier, Tábita, additional, Maiers, Martin, additional, Hurley, Carolyn K., additional, Bedoya, Gabriel, additional, Gallo, Carla, additional, Hurtado, Ana Magdalena, additional, Llop, Elena, additional, Petzl-Erler, Maria Luiza, additional, Poletti, Giovanni, additional, Rothhammer, Francisco, additional, Tsuneto, Luiza, additional, Klitz, William, additional, and Ruiz-Linares, Andrés, additional
- Published
- 2020
- Full Text
- View/download PDF
73. Genetic demography of Antioquia (Colombia) and the Central Valley of Costa Rica
- Author
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Carvajal-Carmona, Luis G., Ophoff, Roel, Service, Susan, Hartiala, Jaana, Molina, Julio, Leon, Pedro, Ospina, Jorge, Bedoya, Gabriel, Freimer, Nelson, and Ruiz-Linares, Andrés
- Published
- 2003
- Full Text
- View/download PDF
74. Dexamethasone Inhibits Apoptosis of Human Neutrophils Induced by Reactive Oxygen Species
- Author
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Ruiz, Lina M., Bedoya, Gabriel, Salazar, James, García de O, Diana, and Patiño, Pablo J.
- Published
- 2002
- Full Text
- View/download PDF
75. Abundant mtDNA diversity and ancestral admixture in Colombian criollo cattle (Bos taurus)
- Author
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Carvajal-Carmona, Luis G., Bermudez, Nelson, Olivera-Angel, Martha, Estrada, Luzardo, Ossa, Jorge, Bedoya, Gabriel, and Ruiz-Linares, Andres
- Subjects
Cattle -- Genetic aspects ,Cattle -- Research ,Biological sciences - Abstract
Various cattle populations in the Americas (known as criollo breeds) have an origin in some of the first livestock introduced to the continent early in the colonial period (16th and 17th centuries). These cattle constitute a potentially important genetic reserve as they are well adapted to local environments and show considerable variation in phenotype. To examine the genetic ancestry and diversity of Colombian criollo we obtained mitochondrial DNA control region sequence information for 110 individuals from seven breeds. Old World haplogroup T3 is the most commonly observed CR lineage in criollo (0.65), in agreement with a mostly European ancestry for these cattle. However, criollo also shows considerable frequencies of haplogroups T2 (0.9) and T1 (0.26), with T1 lineages in criollo being more diverse than those reported for West Africa. The distribution and diversity of Old World lineages suggest some North African ancestry for criollo, probably as a result of the Arab occupation of Iberia prior to the European migration to the New World. The mtDNA diversity of criollo is higher than that reported for European and African cattle and is consistent with a differentiated ancestry for some criollo breeds.
- Published
- 2003
76. Y-chromosome evidence for differing ancient demographic histories in the Americas
- Author
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Bortolini, Maria-Catira, Salzano, Francisco M., Thomas, Mark G., Stuart, Steven, Nasanen, Selja P.K., Bau, Claiton H.D., Hutz, Mara H., Layrisse, Zulay, Petzl-Erler, Maria L., Tsuneto, Luiza T., Hill, Kim, Hurtado, Ana M., Castro-de-Guerra, Dinorah, Torres, Maria M., Groot, Helena, Michalski, Roman, Nymadawa, Pagbajabyn, Bedoya, Gabriel, Bradman, Neil, Labuda, Damian, and Ruiz-Linares, Andres
- Subjects
Y chromosome -- Genetic aspects ,Haplotypes -- Genetic aspects ,DNA -- Genetic aspects ,Mitochondria -- Genetic aspects ,Heredity -- Research ,Heredity -- Genetic aspects ,Human genetics -- Research ,Population genetics -- Demographic aspects ,Biological sciences - Published
- 2003
77. An integrated map of genetic variation from 1,092 human genomes
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McVean, Gil A., Altshuler, David M., Durbin, Richard M., Abecasis, Gonçalo R., Bentley, David R., Chakravarti, Aravinda, Clark, Andrew G., Donnelly, Peter, Eichler, Evan E., Flicek, Paul, Gabriel, Stacey B., Gibbs, Richard A., Green, Eric D., Hurles, Matthew E., Knoppers, Bartha M., Korbel, Jan O., Lander, Eric S., Lee, Charles, Lehrach, Hans, Mardis, Elaine R., Marth, Gabor T., Nickerson, Deborah A., Schmidt, Jeanette P., Sherry, Stephen T., Wang, Jun, Wilson, Richard K., Dinh, Huyen, Kovar, Christie, Lee, Sandra, Lewis, Lora, Muzny, Donna, Reid, Jeff, Wang, Min, Wang, Jun, Fang, Xiaodong, Guo, Xiaosen, Jian, Min, Jiang, Hui, Jin, Xin, Li, Guoqing, Li, Jingxiang, Li, Yingrui, Li, Zhuo, Liu, Xiao, Lu, Yao, Ma, Xuedi, Su, Zhe, Tai, Shuaishuai, Tang, Meifang, Wang, Bo, Wang, Guangbiao, Wu, Honglong, Wu, Renhua, Yin, Ye, Zhang, Wenwei, Zhao, Jiao, Zhao, Meiru, Zheng, Xiaole, Zhou, Yan, Lander, Eric S., Gabriel, Stacey B., Gupta, Namrata, Flicek, Paul, Clarke, Laura, Leinonen, Rasko, Smith, Richard E., Zheng-Bradley, Xiangqun, Bentley, David R., Grocock, Russell, Humphray, Sean, James, Terena, Kingsbury, Zoya, Lehrach, Hans, Sudbrak, Ralf, Albrecht, Marcus W., Amstislavskiy, Vyacheslav S., Borodina, Tatiana A., Lienhard, Matthias, Mertes, Florian, Sultan, Marc, Timmermann, Bernd, Yaspo, Marie-Laure, Sherry, Stephen T., McVean, Gil A., Mardis, Elaine R., Wilson, Richard K., Fulton, Lucinda, Fulton, Robert, Weinstock, George M., Durbin, Richard M., Balasubramaniam, Senduran, Burton, John, Danecek, Petr, Keane, Thomas M., Kolb-Kokocinski, Anja, McCarthy, Shane, Stalker, James, Quail, Michael, Schmidt, Jeanette P., Davies, Christopher J., Gollub, Jeremy, Webster, Teresa, Wong, Brant, Zhan, Yiping, Auton, Adam, Yu, Fuli, Bainbridge, Matthew, Challis, Danny, Evani, Uday S., Lu, James, Nagaswamy, Uma, Sabo, Aniko, Wang, Yi, Yu, Jin, Coin, Lachlan J. M., Fang, Lin, Li, Qibin, Li, Zhenyu, Lin, Haoxiang, Liu, Binghang, Luo, Ruibang, Qin, Nan, Shao, Haojing, Wang, Bingqiang, Xie, Yinlong, Ye, Chen, Yu, Chang, Zhang, Fan, Zheng, Hancheng, Zhu, Hongmei, Garrison, Erik P., Kural, Deniz, Lee, Wan-Ping, Fung Leong, Wen, Ward, Alistair N., Wu, Jiantao, Zhang, Mengyao, Lee, Charles, Griffin, Lauren, Hsieh, Chih-Heng, Mills, Ryan E., Shi, Xinghua, von Grotthuss, Marcin, Zhang, Chengsheng, Daly, Mark J., DePristo, Mark A., Banks, Eric, Bhatia, Gaurav, Carneiro, Mauricio O., del Angel, Guillermo, Genovese, Giulio, Handsaker, Robert E., Hartl, Chris, McCarroll, Steven A., Nemesh, James C., Poplin, Ryan E., Schaffner, Stephen F., Shakir, Khalid, Yoon, Seungtai C., Lihm, Jayon, Makarov, Vladimir, Jin, Hanjun, Kim, Wook, Cheol Kim, Ki, Korbel, Jan O., Rausch, Tobias, Beal, Kathryn, Cunningham, Fiona, Herrero, Javier, McLaren, William M., Ritchie, Graham R. S., Clark, Andrew G., Gottipati, Srikanth, Keinan, Alon, Rodriguez-Flores, Juan L., Sabeti, Pardis C., Grossman, Sharon R., Tabrizi, Shervin, Tariyal, Ridhi, Cooper, David N., Ball, Edward V., Stenson, Peter D., Barnes, Bret, Bauer, Markus, Keira Cheetham, R., Cox, Tony, Eberle, Michael, Kahn, Scott, Murray, Lisa, Peden, John, Shaw, Richard, Ye, Kai, Batzer, Mark A., Konkel, Miriam K., Walker, Jerilyn A., MacArthur, Daniel G., Lek, Monkol, Sudbrak, Herwig, Ralf, Shriver, Mark D., Bustamante, Carlos D., Byrnes, Jake K., De La Vega, Francisco M., Gravel, Simon, Kenny, Eimear E., Kidd, Jeffrey M., Lacroute, Phil, Maples, Brian K., Moreno-Estrada, Andres, Zakharia, Fouad, Halperin, Eran, Baran, Yael, Craig, David W., Christoforides, Alexis, Homer, Nils, Izatt, Tyler, Kurdoglu, Ahmet A., Sinari, Shripad A., Squire, Kevin, Xiao, Chunlin, Sebat, Jonathan, Bafna, Vineet, Ye, Kenny, Burchard, Esteban G., Hernandez, Ryan D., Gignoux, Christopher R., Haussler, David, Katzman, Sol J., James Kent, W., Howie, Bryan, Ruiz-Linares, Andres, Dermitzakis, Emmanouil T., Lappalainen, Tuuli, Devine, Scott E., Liu, Xinyue, Maroo, Ankit, Tallon, Luke J., Rosenfeld, Jeffrey A., Min Kang, Hyun, Anderson, Paul, Angius, Andrea, Bigham, Abigail, Blackwell, Tom, Busonero, Fabio, Cucca, Francesco, Fuchsberger, Christian, Jones, Chris, Jun, Goo, Li, Yun, Lyons, Robert, Maschio, Andrea, Porcu, Eleonora, Reinier, Fred, Sanna, Serena, Schlessinger, David, Sidore, Carlo, Tan, Adrian, Kate Trost, Mary, Awadalla, Philip, Hodgkinson, Alan, Lunter, Gerton, McVean, Gil A., Marchini, Jonathan L., Myers, Simon, Churchhouse, Claire, Delaneau, Olivier, Gupta-Hinch, Anjali, Iqbal, Zamin, Mathieson, Iain, Rimmer, Andy, Xifara, Dionysia K., Oleksyk, Taras K., Fu, Yunxin, Liu, Xiaoming, Xiong, Momiao, Jorde, Lynn, Witherspoon, David, Xing, Jinchuan, Eichler, Evan E., Browning, Brian L., Alkan, Can, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Ko, Arthur, Sudmant, Peter H., Mardis, Elaine R., Chen, Ken, Chinwalla, Asif, Ding, Li, Dooling, David, Koboldt, Daniel C., McLellan, Michael D., Wallis, John W., Wendl, Michael C., Zhang, Qunyuan, Hurles, Matthew E., Tyler-Smith, Chris, Albers, Cornelis A., Ayub, Qasim, Chen, Yuan, Coffey, Alison J., Colonna, Vincenza, Huang, Ni, Jostins, Luke, Li, Heng, Scally, Aylwyn, Walter, Klaudia, Xue, Yali, Zhang, Yujun, Gerstein, Mark B., Abyzov, Alexej, Balasubramanian, Suganthi, Chen, Jieming, Clarke, Declan, Fu, Yao, Habegger, Lukas, Harmanci, Arif O., Jin, Mike, Khurana, Ekta, Jasmine Mu, Xinmeng, Sisu, Cristina, Lee, Charles, McCarroll, Steven A., Degenhardt, Jeremiah, Korbel, Jan O., Stütz, Adrian M., Church, Deanna, Michaelson, Jacob J., Eichler, Evan E., Hurles, Matthew E., Blackburne, Ben, Lindsay, Sarah J., Ning, Zemin, DePristo, Mark A., Min Kang, Hyun, Mardis, Elaine R., Yu, Fuli, Michelson, Leslie P., Tyler-Smith, Chris, Frankish, Adam, Harrow, Jennifer, Fowler, Gerald, Hale, Walker, Kalra, Divya, Flicek, Paul, Clarke, Laura, Barker, Jonathan, Kelman, Gavin, Kulesha, Eugene, Radhakrishnan, Rajesh, Roa, Asier, Smirnov, Dmitriy, Streeter, Ian, Toneva, Iliana, Vaughan, Brendan, Sherry, Stephen T., Ananiev, Victor, Belaia, Zinaida, Beloslyudtsev, Dimitriy, Bouk, Nathan, Chen, Chao, Cohen, Robert, Cook, Charles, Garner, John, Hefferon, Timothy, Kimelman, Mikhail, Liu, Chunlei, Lopez, John, Meric, Peter, OʼSullivan, Chris, Ostapchuk, Yuri, Phan, Lon, Ponomarov, Sergiy, Schneider, Valerie, Shekhtman, Eugene, Sirotkin, Karl, Slotta, Douglas, Zhang, Hua, Chakravarti, Aravinda, Knoppers, Bartha M., Barnes, Kathleen C., Beiswanger, Christine, Burchard, Esteban G., Bustamante, Carlos D., Cai, Hongyu, Cao, Hongzhi, Durbin, Richard M., Gharani, Neda, Henn, Brenna, Jones, Danielle, Jorde, Lynn, Kaye, Jane S., Kent, Alastair, Kerasidou, Angeliki, Mathias, Rasika, Ossorio, Pilar N., Parker, Michael, Reich, David, Rotimi, Charles N., Royal, Charmaine D., Sandoval, Karla, Su, Yeyang, Sudbrak, Ralf, Tian, Zhongming, Tishkoff, Sarah, Toji, Lorraine H., Tyler-Smith, Chris, Via, Marc, Wang, Yuhong, Yang, Huanming, Yang, Ling, Zhu, Jiayong, Bodmer, Walter, Bedoya, Gabriel, Ruiz-Linares, Andres, Zhi Ming, Cai, Yang, Gao, Jia You, Chu, Peltonen, Leena, Garcia-Montero, Andres, Orfao, Alberto, Dutil, Julie, Martinez-Cruzado, Juan C., Oleksyk, Taras K., Brooks, Lisa D., Felsenfeld, Adam L., McEwen, Jean E., Clemm, Nicholas C., Duncanson, Audrey, Dunn, Michael, Guyer, Mark S., Peterson, Jane L., Abecasis, Goncalo R., and Auton, Adam
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- 2012
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78. Inbreeding, Native American ancestry and child mortality: linking human selection and paediatric medicine.
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Koenigstein, Fabienne, Boekstegers, Felix, Wilson, James F, Fuentes-Guajardo, Macarena, Gonzalez-Jose, Rolando, Bedoya, Gabriel, Bortolini, Maria Cátira, Acuña-Alonzo, Victor, Gallo, Carla, Linares, Andres Ruiz, Rothhammer, Francisco, and Bermejo, Justo Lorenzo
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- 2022
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79. ABCB1/4 gallbladder cancer risk variants identified in India also show strong effects in Chileans
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Boekstegers, Felix, primary, Marcelain, Katherine, additional, Barahona Ponce, Carol, additional, Baez Benavides, Pablo F., additional, Müller, Bettina, additional, de Toro, Gonzalo, additional, Retamales, Javier, additional, Barajas, Olga, additional, Ahumada, Monica, additional, Morales, Erik, additional, Rojas, Armando, additional, Sanhueza, Verónica, additional, Loader, Denisse, additional, Rivera, María Teresa, additional, Gutiérrez, Lorena, additional, Bernal, Giuliano, additional, Ortega, Alejandro, additional, Montalvo, Domingo, additional, Portiño, Sergio, additional, Bertrán, Maria Enriqueta, additional, Gabler, Fernando, additional, Spencer, Loreto, additional, Olloquequi, Jordi, additional, González Silos, Rosa, additional, Fischer, Christine, additional, Scherer, Dominique, additional, Jenab, Mazda, additional, Aleksandrova, Krasimira, additional, Katzke, Verena, additional, Weiderpass, Elisabete, additional, Moradi, Tahereh, additional, Fischer, Krista, additional, Bossers, Willem, additional, Brenner, Hermann, additional, Hveem, Kristian, additional, Eklund, Niina, additional, Völker, Uwe, additional, Waldenberger, Melanie, additional, Fuentes Guajardo, Macarena, additional, Gonzalez-Jose, Rolando, additional, Bedoya, Gabriel, additional, Bortolini, Maria C., additional, Canizales, Samuel, additional, Gallo, Carla, additional, Ruiz Linares, Andres, additional, Rothhammer, Francisco, additional, and Lorenzo Bermejo, Justo, additional
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- 2020
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80. Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations
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Yang, Ning Ning, Mazières, Stephane, Bravi, Claudio, Ray, Nicolas, Wang, Sijia, Burley, Mari-Wyn, Bedoya, Gabriel, Rojas, Winston, Parra, Maria V., Molina, Julio A., Gallo, Carla, Poletti, Giovanni, Hill, Kim, Hurtado, Ana M., Petzl-Erler, Maria L., Tsuneto, Luiza T., Klitz, William, Barrantes, Ramiro, Llop, Elena, Rothhammer, Francisco, Labuda, Damian, Salzano, Francisco M., Bortolini, Maria-Cátira, Excoffier, Laurent, Dugoujon, Jean Michel, and Ruiz-Linares, Andrés
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- 2010
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81. The First Homozygous Family for Prothrombin G20210A Polymorphism Reported in Latin America
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Roman-Gonzalez, Alejandro, Cardona, Henry, Cardona-Maya, Walter, Alvarez, Leonor, Castaneda, Serguei, Martinez, Juliana, Torres, Jose D., Tobón, Luis, Bedoya, Gabriel, and Cadavid, Angela
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- 2009
82. Extensive founder effect for distal renal tubular acidosis (dRTA) with sensorineural deafness in an isolated South American population
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Nikali, Kaisu, Vanegas, Juan J., Burley, Mari-Wyn, Martinez, Juliana, Lopez, Lina M., Bedoya, Gabriel, Wrong, Oliver M., Povey, Sue, Unwin, Robert J., and Ruiz-Linares, Andres
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- 2008
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83. Genetic components of human pain sensitivity: a protocol for a genome-wide association study of experimental pain in healthy volunteers
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Schmid, Annina B., Adhikari, Kaustubh, Ramirez-Aristeguieta, Luis Miguel, Chacón-Duque, Juan-Camilo, Poletti, Giovanni, Gallo, Carla, Rothhammer, Francisco, Bedoya, Gabriel, Ruiz-Linares, Andres, Bennett, David L, Dept of Genetics, Evolution and Environment [London] (UCL-GEE), University College of London [London] (UCL), Anthropologie bio-culturelle, Droit, Ethique et Santé (ADES), Aix Marseille Université (AMU)-EFS ALPES MEDITERRANEE-Centre National de la Recherche Scientifique (CNRS), State Key Laboratory of Genetics Engineering & MOE Key Laboratory of Contemporary Anthropology, and Fudan University [Shanghai]-School of Life Sciences
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genome-wide association study ,thermal pain ,adult ,[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology ,Hispanic ,genetic analysis ,Article ,purl.org/pe-repo/ocde/ford#3.02.00 [https] ,human experiment ,mechanical pain ,experimental pain ,genetics ,pain ,pain sensitivity ,human ,nociception ,normal human ,hyperalgesia - Abstract
IntroductionPain constitutes a major component of the global burden of diseases. Recent studies suggest a strong genetic contribution to pain susceptibility and severity. Whereas most of the available evidence relies on candidate gene association or linkage studies, research on the genetic basis of pain sensitivity using genome-wide association studies (GWAS) is still in its infancy. This protocol describes a proposed GWAS on genetic contributions to baseline pain sensitivity and nociceptive sensitisation in a sample of unrelated healthy individuals of mixed Latin American ancestry.Methods and analysisA GWAS on genetic contributions to pain sensitivity in the naïve state and following nociceptive sensitisation will be conducted in unrelated healthy individuals of mixed ancestry. Mechanical and thermal pain sensitivity will be evaluated with a battery of quantitative sensory tests evaluating pain thresholds. In addition, variation in mechanical and thermal sensitisation following topical application of mustard oil to the skin will be evaluated.Ethics and disseminationThis study received ethical approval from the University College London research ethics committee (3352/001) and from the bioethics committee of the Odontology Faculty at the University of Antioquia (CONCEPTO 01–2013). Findings will be disseminated to commissioners, clinicians and service users via papers and presentations at international conferences.
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- 2019
84. Evaluación de las variantes en los genes IL6R, TLR3 y DC-SIGN asociadas con dengue en una muestra de población colombiana
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Avendaño-Tamayo, Efrén, Rúa, Alex, Parra-Marín, María Victoria, Rojas, Winston, Campo, Omer, Chacón-Duque, Juan, Agudelo-Flórez, Piedad, Narváez, Carlos F., Salgado, Doris M., Restrepo, Bertha Nelly, and Bedoya, Gabriel
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polymorphism, genetic ,toll-like receptor 3 ,Colombia ,Dengue/genetics - Abstract
Introduction: Host genetics is recognized as an influential factor for the development of dengue disease. Objective: This study evaluated the association of dengue with the polymorphisms rs8192284 for gene IL6R, rs3775290 for TLR3, and rs7248637 for DC-SIGN. Materials and methods: Of the 292 surveyed subjects, 191 were confirmed for dengue fever and the remaining 101 were included as controls. The genotypes were resolved using polymerase chain reaction and restriction fragment length polymorphism (PCR- RFLP). In an attempt to determine the risk (Odds Ratio) of suffering dengue fever, data were analyzed using chi-square for alleles and logistic regression for both genotypes and allelic combinations. Confidence intervals were set to 95% for all tests regardless of the adjustment by either self-identification or ancestry. Results: For Afro-Colombians, the allele rs8192284 C offered protection against dengue [OR=0.425,(0.204-0.887), p=0.020]. The alleles rs7248637 A and rs3775290 A posed, respectively, an increased risk of dengue for Afro-Colombians [OR=2.389, (1.170-4.879), p=0.015] and Mestizos [OR=2.329, (1.283-4.226), p=0.005]. The reproducibility for rs8192284 C/C [OR=2.45, (1.05-5.76), p=0.013] remained after adjustment by Amerindian ancestry [OR=2.52, (1.04-6.09), p=0.013]. The reproducibility for rs3775290 A/A [OR=2.48, (1.09-5.65), p=0.033] remained after adjustment by European [OR=2.34, (1.02-5.35), p=0.048], Amerindian [OR=2.49, (1.09-5.66), p=0.035], and African ancestry [OR=2.37, (1.04-5.41), p=0.046]. Finally, the association of dengue fever with the allelic combination CAG [OR=2.07, (1.06-4.05), p=0.033] remained after adjustment by Amerindian ancestry [OR=2.16, (1.09-4.28), p=0.028]. Conclusions: Polymorphisms rs8192284 for IL6R, rs3775290 for TLR3, and rs7248637 for DC-SIGN were associated with the susceptibility to suffer dengue fever in the sampled Colombian population. Resumen Introducción. La genética del huésped se reconoce como un factor que influye en el desarrollo del dengue. Objetivo. Este estudio evaluó la asociación del dengue con los polimorfismos rs8192284 del gen IL6R, rs3775290 del TLR3 y rs7248637 del DC-SIGN. Materiales y métodos. De los 292 sujetos encuestados, en 191 se confirmó la presencia de fiebre por dengue y los restantes 101 se incluyeron como controles. Los genotipos se resolvieron mediante reacción en cadena de la polimerasa y polimorfismos en la longitud de los fragmentos de restricción (PCR-RFLP). En un intento por determinar el riesgo de sufrir dengue, los datos se analizaron mediante la prueba de ji al cuadrado para los alelos y la regresión logística para los genotipos y las combinaciones alélicas. Los intervalos de confianza se calcularon a 95 % para todas las pruebas independientemente ajustadas por autoidentificación o componente genético ancestral. Resultados. En los afrocolombianos, el alelo C rs8192284 ofreció protección contra el dengue (OR=0,425; 0,204-0,887, p=0,020). Los alelos A rs7248637 y Ars3775290 plantearon un mayor riesgo de dengue para los afrocolombianos (OR=2,389; 1,170- 4,879; p=0,015) y los mestizos (OR=2,329; 1,283-4,226: p=0,005), respectivamente. La reproducibilidad para rs8192284 C/C (OR=2,45; 1,05-5,76; p=0,013) permaneció después del ajuste por el componente genético ancestral amerindio (OR=2,52; 1,04- 6,09; p=0,013). La reproducibilidad del rs3775290 A/A (OR=2,48; 1,09-5,65; p=0,033) permaneció después del ajuste por el componente europeo (OR=2,34; 1,02-5,35; p=0,048), el amerindio (OR=2,49; 1,09- 5,66; p=0,035), y el africano (OR=2,37; 1,04- 5,41; p=0,046). Por último, la asociación del dengue con la combinación alélica CAG (OR=2,07; 1,06-4,05; p=0,033) permaneció después del ajuste por el componente genético amerindio (OR=2,16; 1,09-4,28;p=0,028). Conclusión. Los polimorfismos rs8192284 en IL6R, rs3775290 en TLR3 y rs7248637 en DC-SIGN, se asociaron con la propensión a sufrir dengue en una muestra de población colombiana.
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- 2019
85. Obesity, genomic ancestry, and socioeconomic variables in Latin American mestizos
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Ruderman, Anahi, Perez, Luis O., Adhikari, Kaustubh, Navarro, Pablo, Ramallo, Virginia, Gallo López-Aliaga, Carla Maria, Poletti, Giovanni, Bedoya, Gabriel, Bortolini, Maria C., Acuna-Alonzo, Victor, Canizales-Quinteros, Samuel, Rothhammer, Francisco, Ruiz-Linares, Andres, and Gonzalez-Jose, Rolando
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socioeconomic status ,obesity ,chip genotypes ,purl.org/pe-repo/ocde/ford#3.01.01 [https] ,genomic ancestry ,body mass index ,waist-to-hip ratio ,waist-to-height ratio - Abstract
OBJECTIVES: This article aims to assess the contribution of genomic ancestry and socioeconomic status to obesity in a sample of admixed Latin Americans. METHODS: The study comprised 6776 adult volunteers from Brazil, Chile, Colombia, Mexico, and Peru. Each volunteer completed a questionnaire about socioeconomic variables. Anthropometric variables such as weight, height, waist, and hip circumference were measured to calculate body indices: body mass index, waist-to-hip ratio and waist-to-height ratio (WHtR). Genetic data were extracted from blood samples, and ancestry was estimated using chip genotypes. Multiple linear regression was used to evaluate the relationship between the indices and ancestry, educational level, and economic well-being. The body indices were dichotomized to obesity indices by using appropriate thresholds. Odds ratios were calculated for each obesity index. RESULTS: The sample showed high percentages of obesity by all measurements. However, indices did not overlap consistently when classifying obesity. WHtR resulted in the highest prevalence of obesity. Overall, women with low education level and men with high economic wellness were more likely to be obese. American ancestry was statistically associated with obesity indices, although to a lesser extent than socioeconomic variables. CONCLUSIONS: The proportion of obesity was heavily dependent on the index and the population. Genomic ancestry has a significant influence on the anthropometric measurements, especially on central adiposity. As a whole, we detected a large interpopulation variation that suggests that better approaches to overweight and obesity phenotypes are needed in order to obtain more precise reference values.
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- 2019
86. Convergent linkage evidence from two Latin-American population isolates supports the presence of a susceptibility locus for bipolar disorder in 5q31–34
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Herzberg, Ibi, Jasinska, Anna, García, Jenny, Jawaheer, Damini, Service, Susan, Kremeyer, Barbara, Duque, Constanza, Parra, María V., Vega, Jorge, Ortiz, Daniel, Carvajal, Luis, Polanco, Guadalupe, Restrepo, Gabriel J., López, Carlos, Palacio, Carlos, Levinson, Matthew, Aldana, Ileana, Mathews, Carol, Davanzo, Pablo, Molina, Julio, Fournier, Eduardo, Bejarano, Julio, Ramírez, Magui, Ortiz, Carmen Araya, Araya, Xinia, Sabatti, Chiara, Reus, Victor, Macaya, Gabriel, Bedoya, Gabriel, Ospina, Jorge, Freimer, Nelson, and Ruiz-Linares, Andrés
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- 2006
87. Epidemiología de los desórdenes venosos crónicos y factores asociados en amerindios nativos embera-chamí, Antioquia
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García Pineda, Andrés Felipe, Duque Botero, Julieta, Cardona Arias, Jaiberth Antonio, Naranjo González, Carlos Andrés, Rua Molina, Diana Carolina, Montoya Granda, Edisson, Giráldo Méndez, Diana Patricia, Bedoya, Gabriel, Rosique Gracia, Javier, García Pineda, Andrés Felipe, Duque Botero, Julieta, Cardona Arias, Jaiberth Antonio, Naranjo González, Carlos Andrés, Rua Molina, Diana Carolina, Montoya Granda, Edisson, Giráldo Méndez, Diana Patricia, Bedoya, Gabriel, and Rosique Gracia, Javier
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Objective: To analyze the prevalence of chronic venous disorders (CVD) in the embera-chamí from Cristianía (Karmata Rua), in the southwest of Antioquia, and to study possible associated factors (AF). Methodology: A cross sectional study of a random sample of 488 subjects. The diagnosis was performed through Doppler ultrasonography. Information about sociodemographic, behavioral and anthropometric AFs was collected. The most relevant AFs were selected through multiple binary logistic regression. Results: The prevalence of varicose veins was 27.5% and that of chronic venous insufficiency (cvi) was 0.8%. Superficial anatomical segments were compromised in 34.8% of individuals. Age was the most important AF, with an Odds Ratio (OR) between 3.33 and 6.30 according to the type of cvd. Being a female, parity, fat in the thigh/leg and large size were associated with telangiectasias. Age, abdominal fat and leg shape were AF of varicose veins. Superficial veins in both sexes were associated with age and abdominal fat and in women, also with a family background of varicose veins. Deep and perforator veins were associated with age and peripheral fat depletion. Conclusions: The low prevalence pattern of CVDs in embera-chamí may be a consequence of lifestyles involving daily physical activity and genetic differences shared with Amerindians. Deep and perforating disorders should be considered in differential health care programs in relation to mestizos, Objetivo: Analizar la prevalencia de los desórdenes venosos crónicos (dvc) en los embera-chamí de Cristianía (Karmata Rua), en el suroeste de Antioquia, y conocer sus posibles factores asociados (fa).Metodología: Estudio de corte de una muestra aleatoria de 488 sujetos. El diagnóstico se realizó mediante ecoduplex venoso. Se recolectó información sobre fa sociodemográficos, comportamentales y antropométricos. Los fa más relevantes se seleccionaron por regresión logística binaria múltiple.Resultados: La prevalencia de várices fue del 27,5 % y la de insuficiencia venosa crónica (ivc) del 0,8 %. Hubo compromiso de segmentos anatómicos superficiales en el 34,8 % de los individuos. La edad fue el fa más importante, con Odds Ratio (or) entre 3,33 y 6,30 según el tipo de dvc. El sexo femenino, la paridad, la grasa en el muslo y pierna y la talla alta se asociaron a telangiectasias. La edad, la grasa abdominal y la forma de la pierna fueron fa de várices. A las venas superficiales, en ambos sexos, se asociaron la edad y la grasa abdominal y, en mujeres, también los antecedentes familiares de várices. A las profundas y perforantes se asociaron la edad y la depleción de grasa periférica.Conclusiones: El patrón de baja prevalencia de los dvc en embera-chamí puede ser consecuencia de los estilos de vida relacionados con la actividad física diaria y las diferencias genéticas compartidas con amerindios. En los programas de atención en salud diferencial deberían considerarse los desórdenes profundos y perforantes respecto a mestizos
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- 2019
88. Evaluation of variants in IL6R, TLR3, and DC-SIGN genes associated with dengue in sampled Colombian population
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Avendaño-Tamayo, Efren, Rúa, Alex, Parra-Marín, María Victoria, Rojas, Winston, Campo, Omer, Chacón-Duque, Juan, Agudelo-Flórez, Piedad, Narváez, Carlos F., Salgado, Doris M., Restrepo, Bertha Nelly, Bedoya, Gabriel, Avendaño-Tamayo, Efren, Rúa, Alex, Parra-Marín, María Victoria, Rojas, Winston, Campo, Omer, Chacón-Duque, Juan, Agudelo-Flórez, Piedad, Narváez, Carlos F., Salgado, Doris M., Restrepo, Bertha Nelly, and Bedoya, Gabriel
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Introduction: Host genetics is recognized as an influential factor for the development of dengue disease.Objective: This study evaluated the association of dengue with the polymorphisms rs8192284 for gene IL6R, rs3775290 for TLR3, and rs7248637 for DC-SIGN.Materials and methods: Of the 292 surveyed subjects, 191 were confirmed for dengue fever and the remaining 101 were included as controls. The genotypes were resolved using polymerase chain reaction and restriction fragment length polymorphism (PCRRFLP). In an attempt to determine the risk (Odds Ratio) of suffering dengue fever, data were analyzed using chi-square for alleles and logistic regression for both genotypes and allelic combinations. Confidence intervals were set to 95% for all tests regardless of the adjustment by either self-identification or ancestry.Results: For Afro-Colombians, the allele rs8192284 C offered protection against dengue [OR=0.425,(0.204-0.887), p=0.020]. The alleles rs7248637 A and rs3775290 A posed, respectively, an increased risk of dengue for Afro-Colombians [OR=2.389, (1.170-4.879), p=0.015] and Mestizos [OR=2.329, (1.283-4.226), p=0.005]. The reproducibility for rs8192284 C/C [OR=2.45, (1.05-5.76), p=0.013] remained after adjustment by Amerindian ancestry [OR=2.52, (1.04-6.09), p=0.013]. The reproducibility for rs3775290 A/A [OR=2.48, (1.09-5.65), p=0.033] remained after adjustment by European [OR=2.34, (1.02-5.35), p=0.048], Amerindian [OR=2.49, (1.09-5.66), p=0.035], and African ancestry [OR=2.37, (1.04-5.41), p=0.046]. Finally, the association of dengue fever with the allelic combination CAG [OR=2.07, (1.06-4.05), p=0.033] remained after adjustment by Amerindian ancestry [OR=2.16, (1.09-4.28), p=0.028].Conclusions: Polymorphisms rs8192284 for IL6R, rs3775290 for TLR3, and rs7248637 for DC-SIGN were associated with the susceptibility to suffer dengue fever in the sampled Colombian population., Introducción. La genética del huésped se reconoce como un factor que influye en el desarrollo del dengue.Objetivo. Este estudio evaluó la asociación del dengue con los polimorfismos rs8192284 del gen IL6R, rs3775290 del TLR3 y rs7248637 del DC-SIGN.Materiales y métodos. De los 292 sujetos encuestados, en 191 se confirmó la presencia de fiebre por dengue y los restantes 101 se incluyeron como controles. Los genotipos se resolvieron mediante reacción en cadena de la polimerasa y polimorfismos en la longitud de los fragmentos de restricción (PCR-RFLP). En un intento por determinar el riesgo de sufrir dengue, los datos se analizaron mediante la prueba de ji al cuadrado para los alelos y la regresión logística para los genotipos y las combinaciones alélicas. Los intervalos de confianza se calcularon a 95 % para todas las pruebas independientemente ajustadas por autoidentificación o componente genético ancestral.Resultados. En los afrocolombianos, el alelo C rs8192284 ofreció protección contra el dengue (OR=0,425; 0,204-0,887, p=0,020). Los alelos A rs7248637 y A rs3775290 plantearon un mayor riesgo de dengue para los afrocolombianos (OR=2,389; 1,170-4,879; p=0,015) y los mestizos (OR=2,329; 1,283-4,226: p=0,005), respectivamente. La reproducibilidad para rs8192284 C/C (OR=2,45; 1,05-5,76; p=0,013) permaneció después del ajuste por el componente genético ancestral amerindio (OR=2,52; 1,04-6,09; p=0,013). La reproducibilidad del rs3775290 A/A (OR=2,48; 1,09-5,65; p=0,033) permaneció después del ajuste por el componente europeo (OR=2,34; 1,02-5,35; p=0,048), el amerindio (OR=2,49; 1,09- 5,66; p=0,035), y el africano (OR=2,37; 1,04-5,41; p=0,046). Por último, la asociación del dengue con la combinación alélica CAG (OR=2,07; 1,06-4,05; p=0,033) permaneció después del ajuste por el componente genético amerindio (OR=2,16; 1,09-4,28; p=0,028).Conclusión. Los polimorfismos rs8192284 en IL6R, rs3775290 en TLR3 y rs7248637 en DC-SIGN, se asociaron con la propensión a sufrir dengue
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- 2019
89. Obesity, genomic ancestry, and socioeconomic variables in Latin American mestizos
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Ruderman, Anahí, Pérez, Luis, Adhikari, Kaustubh, Navarro, Pablo, Ramallo, Virginia, Gallo, Carla, Poletti, Giovanni, Bedoya, Gabriel, Bortolini, Maria, Acuña-Alonzo, Victor, Canizales-Quinteros, Samuel, Rothhammer, Francisco, Ruiz-Linares, Andrés, González-José, Rolando, Acuña‐Alonzo, Victor, Canizales‐Quinteros, Samuel, Ruiz‐Linares, Andres, González‐José, Rolando, Dept of Genetics, Evolution and Environment [London] (UCL-GEE), University College of London [London] (UCL), Anthropologie bio-culturelle, Droit, Ethique et Santé (ADES), Aix Marseille Université (AMU)-EFS ALPES MEDITERRANEE-Centre National de la Recherche Scientifique (CNRS), State Key Laboratory of Genetics Engineering & MOE Key Laboratory of Contemporary Anthropology, Fudan University [Shanghai]-School of Life Sciences, Laboratorio de Genética Molecular, Universidad de Antioquia = University of Antioquia [Medellín, Colombia], Departamento de Genética, Universidade Federal do Rio Grande do Sul [Porto Alegre] (UFRGS)-Instituto de Biociencias, Molecular Genetics Laboratory, Escuela Nacional de Antropologia y Historia, Unit of Molecular Biology and Genomic Medicine, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán - National Institute of Medical Science and Nutrition Salvador Zubiran [Mexico], Facultad de Medicina & Instituto de Alta Investigacion, Universidad de Tarapaca-Universidade de Chile, and Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET)
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Male ,[SDV]Life Sciences [q-bio] ,[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology ,Overweight ,purl.org/becyt/ford/1 [https] ,0302 clinical medicine ,Waist–hip ratio ,hemic and lymphatic diseases ,Peru ,Prevalence ,0601 history and archaeology ,Chile ,ComputingMilieux_MISCELLANEOUS ,2. Zero hunger ,Waist-to-height ratio ,education.field_of_study ,1. No poverty ,Genomic ancestry ,06 humanities and the arts ,Admixed populations ,Middle Aged ,population characteristics ,Female ,Anatomy ,medicine.symptom ,CIENCIAS NATURALES Y EXACTAS ,Brazil ,Adult ,Waist ,Otras Ciencias Biológicas ,Population ,education ,030209 endocrinology & metabolism ,Colombia ,Ciencias Biológicas ,03 medical and health sciences ,Young Adult ,Genetics ,medicine ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Obesity ,purl.org/becyt/ford/1.6 [https] ,neoplasms ,Mexico ,Ecology, Evolution, Behavior and Systematics ,060101 anthropology ,business.industry ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Anthropometry ,medicine.disease ,eye diseases ,Latin America ,Social Class ,Socioeconomic Factors ,Anthropology ,business ,Body mass index ,Demography - Abstract
Objectives: This article aims to assess the contribution of genomic ancestry and socioeconomic status to obesity in a sample of admixed Latin Americans. Methods: The study comprised 6776 adult volunteers from Brazil, Chile, Colombia, Mexico, and Peru. Each volunteer completed a questionnaire about socioeconomic variables. Anthropometric variables such as weight, height, waist, and hip circumference were measured to calculate body indices: body mass index, waist-to-hip ratio and waist-to-height ratio (WHtR). Genetic data were extracted from blood samples, and ancestry was estimated using chip genotypes. Multiple linear regression was used to evaluate the relationship between the indices and ancestry, educational level, and economic well-being. The body indices were dichotomized to obesity indices by using appropriate thresholds. Odds ratios were calculated for each obesity index. Results: The sample showed high percentages of obesity by all measurements. However, indices did not overlap consistently when classifying obesity. WHtR resulted in the highest prevalence of obesity. Overall, women with low education level and men with high economic wellness were more likely to be obese. American ancestry was statistically associated with obesity indices, although to a lesser extent than socioeconomic variables. Conclusions: The proportion of obesity was heavily dependent on the index and the population. Genomic ancestry has a significant influence on the anthropometric measurements, especially on central adiposity. As a whole, we detected a large interpopulation variation that suggests that better approaches to overweight and obesity phenotypes are needed in order to obtain more precise reference values. Fil: Ruderman, Anahí. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Ciencias Sociales y Humanas; Argentina Fil: Perez, Luis Orlando. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Ciencias Sociales y Humanas; Argentina Fil: Adhikari, Kaustubh. Colegio Universitario de Londres; Reino Unido. Open University; Reino Unido Fil: Navarro, Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Ciencias Sociales y Humanas; Argentina Fil: Ramallo, Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Ciencias Sociales y Humanas; Argentina Fil: Gallo, Carla. Universidad Peruana Cayetano Heredia; Perú Fil: Poletti, Giovanni. Universidad Peruana Cayetano Heredia; Perú Fil: Bedoya Berrío, Gabriel. Universidad de Antioquia; Colombia Fil: Bortolini, María Cátira. Universidade Federal do Rio Grande do Sul; Brasil Fil: Acuña Alonzo, Victor. Instituto Nacional de Antropología E Historia; México Fil: Canizales Quinteros, Samuel. Instituto Nacional de Medicina Genómica; México Fil: Rothhammer, Francisco. Universidad de Chile; Chile Fil: Ruiz-Linares, Andres. Colegio Universitario de Londres; Reino Unido. Fudan University; China Fil: González José, Rolando. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Ciencias Sociales y Humanas; Argentina
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- 2018
90. Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
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Wu, Sijie, Zhang, Manfei, Yang, Xinzhou, Peng, Fuduan, Zhang, Juan, Tan, Jingze, Yang, Yajun, Wang, Lina, Hu, Yanan, Peng, Qianqian, Li, Jinxi, Li, Yu, Guan, Yaqun, Chen, Chen, Hamer, Merel, Nijsten, Tamar, Zeng, Changqing, Adhikari, Kaustubh, Gallo, Carla, Poletti, Giovanni, Schuler-Faccini, Lavinia, Bortolini, Maria-Cátira, Canizales-Quinteros, Samuel, Rothhammer, Francisco, Bedoya, Gabriel, González-José, Rolando, Hu, Hui, Krutmann, Jean, Li, Fan, Kayser, Manfred, Li, Lina, Tan, Kun, Xu, Shuhua, Zhang, Liang, Li, Li, Wang, Sijia, Cooper, Gregory, Central South University [Changsha], Beijing Institute of Technology (BIT), Chinese Academy of Agricultural Sciences (CAAS), Ministry of Agriculture of the People's Republic of China (MOA), Modélisation, Information et Systèmes - UR UPJV 4290 (MIS), Université de Picardie Jules Verne (UPJV), Institut National de l'Environnement Industriel et des Risques (INERIS), Laboratorio de Genética Molecular, Universidad de Antioquia = University of Antioquia [Medellín, Colombia], Unit of Molecular Biology and Genomic Medicine, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán - National Institute of Medical Science and Nutrition Salvador Zubiran [Mexico], Facultad de Medicina & Instituto de Alta Investigacion, Universidad de Tarapaca-Universidade de Chile, Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET), Laboratoire Images, Signaux et Systèmes Intelligents (LISSI), Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Forensic Molecular Biology, ErasmusMC, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), University of Peking, Peking University [Beijing], Graduate School for Integrative Sciences and Engineering, Ingénierie et biologie cellulaire et tissulaire (IBCT (ex IFR133)), Centre Hospitalier Régional Universitaire de Besançon (CHRU Besançon)-Etablissement français du sang [Bourgogne-Franche-Comté] (EFS [Bourgogne-Franche-Comté])-Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), Harvard FAS Center for Systems Biology, Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Ruiz-Linares, Andres
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[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
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- 2018
91. Author response: Novel genetic loci affecting facial shape variation in humans
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Xiong, Ziyi, primary, Dankova, Gabriela, additional, Howe, Laurence J, additional, Lee, Myoung Keun, additional, Hysi, Pirro G, additional, de Jong, Markus A, additional, Zhu, Gu, additional, Adhikari, Kaustubh, additional, Li, Dan, additional, Li, Yi, additional, Pan, Bo, additional, Feingold, Eleanor, additional, Marazita, Mary L, additional, Shaffer, John R, additional, McAloney, Kerrie, additional, Xu, Shu-Hua, additional, Jin, Li, additional, Wang, Sijia, additional, de Vrij, Femke MS, additional, Lendemeijer, Bas, additional, Richmond, Stephen, additional, Zhurov, Alexei, additional, Lewis, Sarah, additional, Sharp, Gemma C, additional, Paternoster, Lavinia, additional, Thompson, Holly, additional, Gonzalez-Jose, Rolando, additional, Bortolini, Maria Catira, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Bedoya, Gabriel, additional, Rothhammer, Francisco, additional, Uitterlinden, André G, additional, Ikram, M Arfan, additional, Wolvius, Eppo, additional, Kushner, Steven A, additional, Nijsten, Tamar EC, additional, Palstra, Robert-Jan TS, additional, Boehringer, Stefan, additional, Medland, Sarah E, additional, Tang, Kun, additional, Ruiz-Linares, Andres, additional, Martin, Nicholas G, additional, Spector, Timothy D, additional, Stergiakouli, Evie, additional, Weinberg, Seth M, additional, Liu, Fan, additional, and Kayser, Manfred, additional
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- 2019
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92. Gut microbiota composition explains more variance in the host cardiometabolic risk than genetic ancestry
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Guzmán-Castañeda, Sandra J., primary, Ortega-Vega, Esteban L., additional, de la Cuesta-Zuluaga, Jacobo, additional, Velásquez-Mejía, Eliana P., additional, Rojas, Winston, additional, Bedoya, Gabriel, additional, and Escobar, Juan S., additional
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- 2019
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93. Obesity, genomic ancestry, and socioeconomic variables in Latin American mestizos
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Ruderman, Anahí, primary, Pérez, Luis O., additional, Adhikari, Kaustubh, additional, Navarro, Pablo, additional, Ramallo, Virginia, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Bedoya, Gabriel, additional, Bortolini, Maria C., additional, Acuña‐Alonzo, Victor, additional, Canizales‐Quinteros, Samuel, additional, Rothhammer, Francisco, additional, Ruiz‐Linares, Andres, additional, and González‐José, Rolando, additional
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- 2019
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94. Variants in genes of innate immunity, appetite control and energy metabolism are associated with host cardiometabolic health and gut microbiota composition
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Ortega-Vega, Esteban L., primary, Guzmán-Castañeda, Sandra J., additional, Campo, Omer, additional, Velásquez-Mejía, Eliana P., additional, de la Cuesta-Zuluaga, Jacobo, additional, Bedoya, Gabriel, additional, and Escobar, Juan S., additional
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- 2019
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95. Evaluation of variants in IL6R, TLR3, and DC-SIGN genes associated with dengue in sampled Colombian population
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Avendaño-Tamayo, Efren, primary, Rúa, Alex, primary, Parra-Marín, María Victoria, primary, Rojas, Winston, primary, Campo, Omer, primary, Chacón-Duque, Juan, primary, Agudelo-Flórez, Piedad, primary, Narváez, Carlos F., primary, Salgado, Doris M., primary, Restrepo, Bertha Nelly, primary, and Bedoya, Gabriel, primary
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- 2019
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96. Genetic contributors to serum uric acid levels in Mexicans and their effect on premature coronary artery disease
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Macias-Kauffer, Luis R., primary, Villamil-Ramírez, Hugo, additional, León-Mimila, Paola, additional, Jacobo-Albavera, Leonor, additional, Posadas-Romero, Carlos, additional, Posadas-Sánchez, Rosalinda, additional, López-Contreras, Blanca E., additional, Morán-Ramos, Sofía, additional, Romero-Hidalgo, Sandra, additional, Acuña-Alonzo, Víctor, additional, del-Río-Navarro, Blanca E., additional, Bortolini, Maria-Cátira, additional, Gallo, Carla, additional, Bedoya, Gabriel, additional, Rothhammer, Francisco, additional, González-Jose, Rolando, additional, Ruiz-Linares, Andrés, additional, Stephens, Christopher R., additional, Velazquez-Cruz, Rafael, additional, Fernández del Valle-Laisequilla, Cecilia, additional, Reyes-García, Juan G., additional, Barranco Garduño, Lina M., additional, Carrasco-Portugal, Miriam del C., additional, Flores-Murrieta, Francisco J., additional, Vargas-Alarcón, Gilberto, additional, Aguilar-Salinas, Carlos A., additional, Villarreal-Molina, Teresa, additional, and Canizales-Quinteros, Samuel, additional
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- 2019
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97. Variantes en los genes TNFA , IL6 e IFNG asociadas con la gravedad del dengue en una muestra de población colombiana
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Avendaño-Tamayo, Efrén, Campo1, Omer, Chacón-Duque, Juan Camilo, Ramírez, Ruth, Rojas, Winston, Agudelo-Flórez, Piedad, Bedoya, Gabriel, and Restrepo, Berta Nelly
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dengue/genética ,citocina ,genotype ,polymerase chain reaction ,polymorphism, genetic ,polimorfismo (genética) ,genotipo ,Colombia ,reacción en cadena de la polimerasa ,Dengue/genetics ,cytokines - Abstract
Resumen Introducción. La composición genética del huésped determina, entre otros aspectos, el perfil clínico del dengue, lo cual se debería al efecto de variantes en los genes que codifican citocinas proinflamatorias. Objetivo. Evaluar la asociación entre las variantes de tres polimorfismos en los genes candidatos TNFA, IL6 e IFNG con la gravedad del dengue en una población colombiana. Materiales y métodos. Se evaluaron los polimorfismos rs1800750, rs2069843 y rs2069705 de los genes TNFA, IL6 e IFNG, respectivamente, en 226 pacientes con dengue. Los genotipos se tipificaron usando la reacción en cadena de la polimerasa (PCR) y los polimorfismos de la longitud de los fragmentos de restricción (Restriction Fragment Length Polymorphism, RFLP). Para determinar el riesgo de diferentes fenotipos del dengue, se compararon las frecuencias alélicas con la prueba de ji al cuadrado, y los genotipos y los haplotipos, con regresión logística. Por último, los análisis se ajustaron utilizando datos de autoidentificación o del componente genético ancestral. Resultados. El alelo A del rs2069843, ajustado por autoidentificación, se asoció con casos de dengue hemorrágico en afrocolombianos. En la muestra completa, dicho polimorfismo, ajustado por componente genético ancestral, fue reproducible. Además, hubo asociaciones significativas entre las combinaciones alélicas GGT y GAC de los rs1800750, rs2069843 y rs2069705 en pacientes con dengue hemorrágico, con ajuste por componente genético ancestral y sin él. Además, la combinación alélica AGC produjo 58,03 pg/ml más de interleucina 6 que la GGC, independientemente de los componentes genéticos europeo, amerindio y africano. Conclusión. Las variantes de los polimorfismos GGT y GAC de los rs1800750, rs2069843 y rs2069705 en los genes TNFA, IL6 e IFNG, respectivamente, se correlacionaron con la gravedad del dengue en esta muestra de población colombiana. Abstract Introduction: The genetic makeup of the host contributes to the clinical profile of dengue. This could be due to the effect of variants in the genes encoding pro-inflammatory cytokines. Objective: To evaluate the association between the variants of three polymorphisms in TNFA, IL6 and IFNG candidate genes with dengue severity in a sample of Colombian population. Materials and methods: We evaluated the rs1800750, rs2069843, and rs2069705 polymorphisms in TNFA, IL6 and IFNG candidate genes, respectively, in 226 patients with dengue infection. The genotypes were typed using both polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP). To determine the risk of different dengue phenotypes, we compared allele frequencies with chisquare and genotypes and haplotypes using logistic regression. Finally, these analyzes were adjusted with data from self-identification or the ancestral genetic component. Results: The A allele in the rs2069843 polymorphism, adjusted by self-identification, was associated with dengue hemorrhagic fever cases in Afro-Colombians. In the entire sample, this polymorphism, adjusted by the ancestral genetic component, was reproducible. In addition, there were significant associations between GGT and GAC allelic combinations of rs1800750, rs2069843, and rs2069705 in dengue hemorrhagic fever patients, with and without adjustment by ancestral genetic component. Additionally, the AGC allelic combination produced 58.03 pg/ml of interleukin-6 more than the GGC combination, regardless of European, Amerindian and African genetic components. Conclusions: The variants of GGT and GAC polymorphisms of rs1800750, rs2069843, and rs2069705 in the TNFA, IL6 and IFNG genes, respectively, were correlated with the susceptibility to dengue severity in a sample of Colombian population.
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- 2017
98. Relación entre asimetría fluctuante y el tratamiento hormonal, cirugía-ortodoncia maxilofacial, traumatismos y malformaciones craneofaciales
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Quinto Sánchez, Mirsha Emanuel, Cintas, Celia, Ramallo, Virginia, Silva de Cerqueira, Caio César, Gomez Valdés, Jorge, Acuña Alonzo, Victor, Adhikari, Kaustubh, Everardo, Paola, Avila, Francisco de, Jaramillo, Carla, Arias, Williams, Fuentes, Macarena, Hünemeier, Tábita, Gallo, Carla, Poletti, Giovani, Rosique, Javier, Schuler-Faccini, Lavinia, Bortolini, Maria Cátira, Canizales Quinteros, Samuel, Rothhammer, Francisco, Bedoya, Gabriel, Ruiz Linares, Andres, and González-José, Rolando
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Antropología ,inestabilidad del desarrollo ,tratamiento hormonal ,asimetría fluctuante facial ,morfometría geométrica - Abstract
En este trabajo se evalúa la relación entre la asimetría fluctuante facial (AFF) y los tratamientos hormonales, cirugías maxilofaciales, ortodoncia, traumatismos y malformaciones. En el marco del proyecto CANDELA, se tomaron cinco fotografías faciales de 3162 voluntarios entre los 18 y 85 años. Por fotogrametría se colocaron 34 landmarks o puntos en 3D y mediante el método Procrustes ANOVA se obtuvieron valores individuales de asimetría fluctuante facial. Se realizó una prueba de ANOVA de una vía y la prueba de Welch y Levene para conocer las diferencias entre media y varianza de los valores de asimetría facial y las variables respuesta. También, se caracterizó la variación morfológica del componente asimétrico de la forma facial mediante técnicas multivariadas sobre los grupos que resultaran diferentes significativamente. Las mujeres que reportaron haber recibido algún tipo de tratamiento hormonal mostraron mayores valores de asimetría fluctuante facial respecto al grupo sin tratamiento. Esta asociación se mantuvo una vez removido el efecto de la heterocigosidad (como indicador de la ancestría) y sin interactuar con el resto de covariables incluidas en el análisis. Los cambios morfológicos asociados a este factor se concentran en el mentón, maxilar labio inferior, región perifrontal, región nasal y orejas. Algunos trabajos anteriores dieron cuenta de la posible relación entre la asimetría facial y los niveles de hormonas, pero no hay estudios que sustenten la relación causal o directa entre la asociación aquí planteada. El presente trabajo es una evidencia más de la asociación entre el consumo de hormonas y modificaciones de caracteres faciales en poblaciones urbanas mestizas latinoamericanas. In this work we test for the putative association between facial fluctuating asymmetry (FFA) and hormone treatments, maxillofacial surgery, orthodontics, injuries, and malformations. A protocol of five photographs and photogrammetric reconstruction was implemented to place thirty-four 3D landmarks in 3162 individuals aged between 18 and 85 years, belonging to the CANDELA initiative. A Procrustes ANOVA test was used to obtain individual facial fluctuating asymmetry scores. One way ANOVA, Welch, and Levene tests were conducted to explore the potential differences between mean and variance of the response variables. Our results indicate that women who received some hormonal treatment showed higher fluctuating facial asymmetry scores in relation to the unaffected group, this being persistent once the effects of heterozygosity (genetic ancestry) and further variables had been statistically controlled. The shape changes corresponding to this association are focused on the chin, jaw, lower lip, prefrontal region, nose, and ears. Previous reports suggested a potential relationship between facial asymmetry and hormone levels, but to the best of our knowledge there are no reports indicating the causation underlying the association detected here. This report is one more evidence of the association between hormone intake and facial asymmetric features in urban admixed Latin American populations. Asociación de Antropología Biológica de la República Argentina
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- 2017
99. Variation in dental morphology and inference of continental ancestry in admixed Latin Americans
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Delgado, Miguel, primary, Ramírez, Luis Miguel, additional, Adhikari, Kaustubh, additional, Fuentes-Guajardo, Macarena, additional, Zanolli, Clément, additional, Gonzalez-José, Rolando, additional, Canizales, Samuel, additional, Bortolini, Maria-Catira, additional, Poletti, Giovanni, additional, Gallo, Carla, additional, Rothhammer, Francisco, additional, Bedoya, Gabriel, additional, and Ruiz-Linares, Andres, additional
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- 2018
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100. Single-Nucleotide Polymorphisms in NOD1, RIPK2, MICB, PLCE1, TNF, and IKBKE Genes Associated with Symptomatic Dengue in Children from Colombia
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Useche, Yerly Magnolia, primary, Ribeiro-Alves, Marcelo, additional, Restrepo, Berta-Nelly, additional, Salgado, Doris Martha, additional, Narváez, Carlos Fernando, additional, Campo, Omer, additional, Avendaño, Efrén, additional, Martínez, Catalina, additional, Chacon-Duque, Juan Camilo, additional, and Bedoya, Gabriel, additional
- Published
- 2018
- Full Text
- View/download PDF
Catalog
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