430 results on '"Allen Chen"'
Search Results
52. The 2014-17 Global Coral Bleaching Event: The Most Severe and Widespread Coral Reef Destruction
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C. Mark Eakin, Denise Devotta, Scott Heron, Sean Connolly, Gang Liu, Erick Geiger, Jacqueline De La Cour, Andrea Gomez, William Skirving, Andrew Baird, Neal Cantin, Courtney Couch, Simon Donner, James Gilmour, Manuel Gonzalez-Rivero, Mishal Gudka, Hugo Harrison, Gregor Hodgson, Ove Hoegh-Guldberg, Andrew Hoey, Mia Hoogenboom, Terry Hughes, Meaghan Johnson, James Kerry, Jennifer Mihaly, Aarón Muñiz-Castillo, David Obura, Morgan Pratchett, Andrea Rivera-Sosa, Claire Ross, Jennifer Stein, Angus Thompson, Gergely Torda, T. Shay Viehman, Cory Walter, Shaun Wilson, Benjamin Marsh, Blake Spady, Noel Dyer, Thomas Adam, Mahsa Alidoostsalimi, Parisa Alidoostsalimi, Lorenzo Alvarez-Filip, Mariana Álvarez-Noriega, Keisha Bahr, Peter Barnes, José Barraza Sandoval, Julia Baum, Andrew Bauman, Maria Beger, Kathryn Berry, Pia Bessell-Browne, Lionel Bigot, Victor Bonito, Ole Brodnicke, David Burdick, Deron Burkepile, April Burt, John Burt, Ian Butler, Jamie Caldwell, Yannick Chancerelle, Chaolun Allen Chen, Kah-Leng Cherh, Michael Childress, Darren Coken, Georgia Coward, M. James Crabbe, Thomas Dallison, Steve Dalton, Thomas DeCarlo, Crawford Drury, Ian Drysdale, Clinton Edwards, Linda Eggertsen, Eylem Elma, Rosmin Ennis, Richard Evans, Gal Eyal, Douglas Fenner, Baruch Figueroa-Zavala, Jay Fisch, Michael Fox, Elena Gadoutsis, Antoine Gilbert, Andrew Halford, Tom Heintz, James Hewlett, Jean-Paul A. Hobbs, Whitney Hoot, Peter Houk, Lyza Johnston, Michelle Johnston, Hajime Kayanne, Emma Kennedy, Ruy Kikuchi, Ulrike Kloiber, Haruko Koike, Lindsey Kramer, Chao-Yang Kuo, Judy Lang, Abigail Leadbeater, Zelinda Leão, Jen Lee, Cynthia Lewis, Diego Lirman, Guilherme Longo, Chancey MacDonald, Sangeeta Mangubhai, Isabel da Silva, Christophe Mason-Parker, Vanessa McDonough, Melanie McField, Thayná Mello, Celine Miternique - Agathe, Stephan Moldzio, Alison Monroe, Monica Montefalcone, Kevin Moses, Pargol Ghavam Mostafavi, Rodrigo Moura, Chathurika Munasinghe, Takashi Nakamura, Jean-Benoit Nicet, Marissa Nuttall, Marilia Oliveira, Hazel Oxenford, John Pandolfi, Vardhan Patankar, Denise Perez, Nishan Perera, Derta Prabuning, William Precht, K. Diraviya Raj, James Reimer, Laura Richardson, Randi Rotjan, Nicole Ryan, Rod Salm, Stuart Sandin, Stephanie Schopmeyer, Mohammad Shokri, Jennifer Smith, Kylie Smith, S. R. Smith, Tyler Smith, Brigitte Sommer, Melina Soto, Helen Sykes, Kelley Tagarino, Marianne Teoh, Minh Thai, Tai Toh, Alex Tredinnick, Alex Tso, Harriet Tyley, Ali Ussi, Christian Vaterlaus, Mark Vermeij, Si Tuan Vo, Christian Voolstra, Hin Boo Wee, Bradley Weiler, Saleh Yahya, Thamasak Yeemin, Maren Ziegler, Tadashi Kimura, and Derek Manzello
- Abstract
Ocean warming is increasing the incidence, scale, and severity of global-scale coral bleaching and mortality, culminating in the third global coral bleaching event that occurred during record marine heatwaves of 2014-2017. While local effects of these events have been widely reported, the global implications remain unknown. Analysis of 15,066 reef surveys during 2014-2017 revealed that 80% of surveyed reefs experienced significant coral bleaching and 35% experienced significant coral mortality. The global extent of significant coral bleaching and mortality was assessed by extrapolating results from reef surveys using comprehensive remote-sensing data of regional heat stress. This model predicted that 51% of the world’s coral reefs suffered significant bleaching and 15% significant mortality, surpassing damage from any prior global bleaching event. These observations demonstrate that global warming’s widespread damage to coral reefs is accelerating and underscores the threat anthropogenic climate change poses for the irreversible transformation of these essential ecosystems.
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- 2022
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53. A multidisciplinary pediatric oncofertility team durably improves fertility preservation and counseling across 7 years
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John Ligon, Masanori Hayashi, Devon Ciampa, Kara Cramer, Alfredo Guastella, Robert Fuchs, Amin Herati, Mindy Christianson, and Allen Chen
- Abstract
We report outcomes 7 years following implementation of a pediatric oncofertility team. We compare our baseline oncofertility survey to 44 post-intervention survey respondents and electronic medical record documentation for 149 patients treated in 2019. 95% of post-intervention survey respondents recalled fertility counseling (baseline 70%, p=0.004) and 89.3% were appropriately referred for fertility preservation (baseline 50%, p=0.017). Counseling was documented in 60.4% of charts; 81% of patients were appropriately referred for fertility preservation. Fertility preservation outcomes differed by sex. Creation of an oncofertility team produced sustained improvements in fertility counseling and fertility preservation referral.
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- 2022
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54. Learning from the past is not enough to survive present and future bleaching threshold temperatures
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Shashank Keshavmurthy, Ting-Ru Chen, Pei-Jen Liu, Jih-Terng Wang, and Chaolun Allen Chen
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Environmental Engineering ,Coral Reefs ,Climate Change ,Temperature ,Environmental Chemistry ,Animals ,Seawater ,Seasons ,Anthozoa ,Pollution ,Waste Management and Disposal - Abstract
In the past decade, the frequency of mass coral bleaching events has increased due to seawater temperature anomalies persisting for longer periods. Coral survival from temperature anomalies has been based on how each species in each location responds to stress, which is unique to individual species and may be due to the way stressful experiences accumulate through time in the form of ecological and physiological memory. A deeper understanding of ecological and physiological memory in corals is necessary to understand their survival strategies into the future. Laboratory experiments can help us simulate seawater temperatures experienced by corals in the past and compare their responses to those of the present and future. In this study, we sampled corals with different life history traits from one location perturbed by seawater temperature incursions (variable site) and from a second, relatively undisturbed location (stable site). We sampled across two seasons to observe the responses to bleaching threshold temperatures in the past (1998-29 °C), present (2018-31 °C), and future (2050-33 °C). Corals were healthy at 29 °C and 31 °C, but a fast-growing, temperature-susceptible coral species experienced high mortality at 33 °C compared to a slow-growing, temperature-resistant coral species. Moreover, corals from the variable site and during the spring season fared better under temperature stress. The results of this study provide insight into the possible role of life-history traits on coral's response to seasons and locations in terms of memory to long-term and short-term thermal anomalies and climate change.
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- 2022
55. A procedure to detect and identify specific chemicals of potential inhalation toxicity concern in aerosols
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Theodore P. Klupinski, Robert A. Moyer, Po-Hsu Allen Chen, Erich D. Strozier, Stephanie S. Buehler, David A. Friedenberg, and Bartosz Koszowski
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Aerosols ,Health, Toxicology and Mutagenesis ,Smoke ,United States Environmental Protection Agency ,Toxicology ,Gas Chromatography-Mass Spectrometry ,United States ,Cannabis - Abstract
Understanding the potential inhalation toxicity of poorly characterized aerosols is challenging both because aerosols may contain numerous chemicals and because it is difficult to predict which chemicals may present significant inhalation toxicity concerns at the observed levels. We have developed a novel systematic procedure to address these challenges through non-targeted chemical analysis by two-dimensional gas chromatography–time-of-flight mass spectrometry (GC × GC-TOFMS) and assessment of the results using publicly available toxicity data to prioritize the tentatively identified detected chemicals according to potential inhalation toxicity. The procedure involves non-targeted chemical analysis of aerosol samples utilizing GC × GC-TOFMS, which is selected because it is an effective technique for detecting chemicals in complex samples and assigning tentative identities according to the mass spectra. For data evaluation, existing toxicity data (e.g. from the U.S. Environmental Protection Agency CompTox Chemicals Dashboard) are used to calculate multiple toxicity metrics that can be compared among the tentatively identified chemicals. These metrics include hazard quotient, incremental lifetime cancer risk, and metrics analogous to hazard quotient that we designated as exposure–(toxicology endpoint) ratios. We demonstrated the utility of our procedure by detecting, identifying, and prioritizing specific chemicals of potential inhalation toxicity concern in the mainstream smoke generated from the machine-smoking of marijuana blunts. By designing a systematic approach for detecting and identifying numerous chemicals in complex aerosol samples and prioritizing the chemicals in relation to different inhalation toxicology endpoints, we have developed an effective approach to elucidate the potential inhalation toxicity of aerosols.
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- 2022
56. PET Imaging of the cannabinoid receptor type 2 in humans using [11C]MDTC
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Yong Du, Jennifer M. Coughlin, Mary Katherine Brosnan, Allen Chen, Laura K. Shinehouse, Rehab Abdallah, Martin A. Lodge, William B. Mathews, Chen Liu, Yunkou Wu, Andrew Hall, Wojciech Lesniak, Robert Dannals, Andrew Horti, and Martin Pomper
- Abstract
Purpose: We report findings from the first-in-human study of [ 11 C]MDTC, a radiotracer developed to image the cannabinoid receptor type 2 (CB2R) with positron emission tomography (PET). Methods: Ten healthy adults were imaged according to a 90 min dynamic PET protocol after bolus intravenous injection of [ 11 C]MDTC. Five participants also completed a second [ 11 C]MDTC PET scan to assess test-retest reproducibility of receptor-binding outcomes. The kinetic behavior of [ 11 C]MDTC in human brain was evaluated using a metabolite-corrected arterial plasma input function with compartmental modeling and graphical analysis approaches. Four additional healthy adults completed whole-body [ 11 C]MDTC PET/CT to calculate organ doses and the whole-body effective dose. Results: [ 11 C]MDTC brain PET and [ 11 C]MDTC whole body PET/CT was well-tolerated. The model of choice for fitting the time activity curves (TACs) across brain regions of interest was a two-tissue compartment model with the blood volume fraction included as a fitting parameter (2TCM-vB). Regional distribution volume (V T ) values computed from Logan graphical analysis correlated well with those estimated using the 2TCM-vB model. Cortical regions and thalamus had higher V T than brainstem, striatum, hippocampus, and corpus callosum. Test-retest reliability of V T demonstrated a mean absolute variability of 7.13%, with an intraclass correlation coefficient 0.91. The measured effective dose of [ 11 C]MDTC was 5.29 µSv/MBq. Conclusion: These data support use of [ 11 C]MDTC PET for in vivo neuroimaging of CB2R in humans. Future in vivo studies using [ 11 C]MDTC PET in neuroinflammatory conditions are needed to assess the detection of high expression of the CB2R by activated microglia in human brain.
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- 2022
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57. Identify the regulatory network of LncRNA HAR1A in neurological development by RNA-Sequencing and bioinformatics analysis
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Luting Zhang, Sheng Mou Lin, Nan Li, Kailing Huang, ShuHan Shen, Zhouxia Zheng, Xiaoshun Shi, Allen Chen, Jimei Sun, JingYin Kong, and Min Chen
- Abstract
Background: LncRNA HAR1A, which is explicitly expressed in Cajal-Retzius neurons (CRs), has been reported to be related to the development of the human brain. As one of the human accelerated regions (HARs) gene, it plays an important role in central neural evolution. Dysregulation of lncRNA HAR1A was associated with many central nervous system diseases. Methods:We cloned human gene HAR1A into the EF-1α promoter vector to make the transgenic mice. To observe the changes in memory and cognitive ability of mice, we conducted the Morris water maze (MWM) test and step-down passive avoidance test. RNA-seq analysis was performed to identify the differentially expressed genes (DEGs) of the experiment and control group. Systematic bioinformatic analysis was used to confirm the pathway and function that the DEGs enriched in. 523 human gene expression datasets were downloaded from The Cancer Genome Atlas (TCGA) for Co-expression analysis. Through Co-expression analysis, we obtained the Protein-Protein Interactions Network (PPI-Net) and enrichment pathways of LncRNA HAR1A's co-expression genes in human. Results:The memory and cognitive ability of the transgene mice were significantly improved. Results of GO analysis showed that cerebral cortex development is the most significant function related to HAR1A in brain development. DEGs enriched in this function included Lhx2, Emx2, Foxg1, Nr2e1, Emx1. They all play an important role in the regulation of CRs' function. "Cellular response to calcium ion" exhibited the highest rich factor in the Gene Ontology (GO) analysis. Core genes in the PPI-Net were SNAP25, GRIN1, SYN1, DLG4, CAMK2A. SNAP25, SYN1 relate to synaptic function. GRIN1, DLG4 and CAMK2A relate to synapse formation. GO and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of DEGs and HAR1A 's Co-expressed genes in 523 human gene expression datasets show that synapse, axon guidance, synaptic signaling and ligand-receptor interaction are significant.Conclusions:Overexpress HAR1A will improve the memory and cognitive ability of the transgene mice. The possible mechanism is HAR1A affects brain development by regulating CRs' function. Moreover, HAR1A may be involved in ligand-receptor interaction, Axon guidance and synapse formation, which are important for brain development and evolution. Cellular response to calcium may play an important role in those process.
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- 2022
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58. Historical Connectivity and Demography of the Ferocious Reef Crab, Eriphia ferox (Crustacea; Eriphiidae), Demonstrate That Taoyuan Algal Reef Is an Essential Population Source Along the East Taiwan Strait
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Mu-Han Chen, Ya-Yi Huang, Bi-Ying Huang, Hernyi Justin Hsieh, Jen Nie Lee, Mei Lin Neo, Hironobu Fukami, and Chaolun Allen Chen
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mitochondrial cytochrome oxidase I (COI) ,Global and Planetary Change ,Taiwan Strait ,Science ,General. Including nature conservation, geographical distribution ,Ocean Engineering ,QH1-199.5 ,Aquatic Science ,Taoyuan Algal Reef ,Oceanography ,northwestern Pacific ,Eriphia ferox ,crustacean ,Water Science and Technology - Abstract
The east Taiwan Strait is largely fringed by sandy and muddy habitats. However, a massive algal reef made of crustose coralline algae has been found along the coast off Taoyuan city in northwestern Taiwan. The porous structure of Taoyuan Algal Reef harbors high abundance and diversity in marine organisms, including the ferocious reef crab, Eriphia ferox. Such a pivotal geographic location and unique ecological features make Taoyuan Algal Reef a potential stepping stone connecting biotic reefs in the east Taiwan Strait, South China Sea to the south, and even the high latitude of Japan to the north. In this study, we examined the population connectivity and historical demography of E. ferox by analyzing mitochondrial cytochrome oxidase I (COI) fragments of 317 individuals sampled from 21 localities in the northwestern Pacific. Our analyses of haplotype network and pairwise FST comparisons revealed a lack of phylogeographical structure among E. ferox populations, implying the existence of a migration corridor connecting the South and East China Seas through the east Taiwan Strait. Multiple lines of evidence, including significant values in neutrality tests, unimodally shaped mismatch distributions, and Bayesian skyline plots elucidated the rapid population growth of E. ferox following the sea-level rise after Last Glacial Maximum (ca. 2–10 Ka). Such demographic expansion in E. ferox coincided with the time when Taoyuan Algal Reef started to build up around 7,500 years ago. Coalescent migration analyses further indicated that the large and continuous E. ferox population exclusively found in Datan Algal Reef, the heart of Taoyuan Algal Reef, was a source population exporting migrants both northward and southward to the adjacent populations. The bidirectional gene flow should be attributed to larval dispersal by ocean currents and secondary contact due to historical population expansion. Instead of serving as a stepping stone, our results support that Taoyuan Algal Reef is an essential population source for biotic reef-associated species along the east Taiwan Strait, and highlight the importance of conserving such a unique ecosystem currently threatened by anthropogenic development.
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- 2022
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59. Patient Safety and Health Information Technology
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Yushi Yang, Samantha Pitts, Allen Chen, Nicole Mollenkopf, Taylor Woodroof, and Bridgette Thomas
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- 2022
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60. Extra high superoxide dismutase in host tissue is associated with improving bleaching resistance in 'thermal adapted' and Durusdinium trenchii-associating coral
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Jih-Terng Wang, Yi-Ting Wang, Chaolun Allen Chen, Pei-Jei Meng, Kwee Siong Tew, Pei-Wen Chiang, and Sen-Lin Tang
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Symbiodiniaceae algae ,General Neuroscience ,Coral bleaching ,fungi ,Medicine ,Endozoicomonas ,General Medicine ,Superoxide dismutase ,biochemical phenomena, metabolism, and nutrition ,General Agricultural and Biological Sciences ,Catalase ,General Biochemistry, Genetics and Molecular Biology - Abstract
Global warming threatens reef-building corals with large-scale bleaching events; therefore, it is important to discover potential adaptive capabilities for increasing their temperature resistance before it is too late. This study presents two coral species (Platygyra verweyi and Isopora palifera) surviving on a reef having regular hot water influxes via a nearby nuclear power plant that exhibited completely different bleaching susceptibilities to thermal stress, even though both species shared several so-called “winner” characteristics (e.g., containing Durusdinium trenchii, thick tissue, etc.). During acute heating treatment, algal density did not decline in P. verweyi corals within three days of being directly transferred from 25 to 31 °C; however, the same treatment caused I. palifera to lose P. verweyi over I. palifera. Moreover, P. verweyi also contained significantly higher saturated and lower mono-unsaturated fatty acids, especially a long-chain saturated fatty acid (C22:0), than I. palifera, and was consistently associated with the symbiotic bacteria Endozoicomonas, which was not found in I. palifera. However, antibiotic treatment and inoculation tests did not support Endozoicomonas having a direct contribution to thermal resistance. This study highlights that, besides its association with a thermally tolerable algal symbiont, a high level of constitutive antioxidant enzymes in the coral host is crucial for coral survivorship in the more fluctuating and higher temperature environments.
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- 2022
61. Oral Cavity Cancers
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Keith Unger, Matthew Forsthoefel, Nadeem Riaz, Allen Chen, and Nancy Y. Lee
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- 2022
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62. Simple and Fast Convolutional Neural Network Applied to Median Cross Sections for Predicting the Presence of MGMT Promoter Methylation in FLAIR MRI Scans
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Daniel Chen, Allen Chen, and Haiyan Wang
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- 2022
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63. What is for dessert? Crown-of-thorns starfish feeds on non-scleractinian anthozoans at Taiping Island (Itu Aba), Spratlys, South China Sea
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Chao-Yang Kuo, Ming-Jay Ho, Wei Khang Heng, Ya-Yi Huang, Chia-Ying Ko, Guo-Chen Jiang, Ming-Shiou Jeng, and Chaolun Allen Chen
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Aquatic Science ,Oceanography ,Ecology, Evolution, Behavior and Systematics - Published
- 2021
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64. New record of the encrusting alga Ramicrusta textilis overgrowing corals in the lagoon of Dongsha Atoll, South China Sea
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Pin-Chen Chen, Shao-Lun Liu, Chaolun Allen Chen, and Carolin Nieder
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0106 biological sciences ,geography.geographical_feature_category ,biology ,010604 marine biology & hydrobiology ,Atoll ,Aquatic Science ,Oceanography ,biology.organism_classification ,01 natural sciences ,DNA barcoding ,Geography ,Algae ,Benthic zone ,Substrate (aquarium) ,Lobophora ,Crustose ,Reef - Abstract
The crustose calcareous alga, Ramicrusta textilis Pueschel and G.W. Saunders (Peyssonneliaceae, Rhodophyta), was recently observed to overgrow dead and living corals in shallow lagoon patch reefs of Dongsha Atoll, South China Sea. DNA barcoding revealed that R. textilis frequently co-occurred in a complex with other crustose algae of the family Peyssonneliaceae and the genus Lobophora, forming patchy crusts that cover 3%–29% of the benthic substrate. This is the first record R. textilis overgrowing corals in the Pacific Ocean.
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- 2019
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65. Scleractinian diversity in the upper mesophotic zone of Ludao (Taiwan): a museum collection with new records from Taiwanese waters
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Stéphane De Palmas, Chaolun Allen Chen, Ming-Jay Ho, Derek Soto, Yuting Vicky Lin, and Vianney Denis
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Poritidae ,geography ,geography.geographical_feature_category ,biology ,Ecology ,Species diversity ,Rhodolith ,Fungiidae ,Coral reef ,Aquatic Science ,Oceanography ,biology.organism_classification ,Acroporidae ,Specimen collection ,Species richness ,Ecology, Evolution, Behavior and Systematics - Abstract
Taiwan’s shallow coral reef habitats (0–30 m) and their scleractinian fauna are well-studied but its mesophotic zone (30–90 m) remains underexamined. This study documents mesophotic (38–60 m) habitat and species diversity at Ludao, Taiwan. In northern and southern Ludao, mesophotic habitats display low-grade slopes (
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- 2021
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66. Trichotillomania in the United States: An epidemiologic study of patient characteristics, comorbidities, and treatment patterns
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Sarah P. Pourali, April W. Armstrong, Goli S Compoginis, Yasmin Gutierrez, Allen Chen, Madison E. Jones, Jeffrey R. Rajkumar, and Alison H. Kohn
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Adult ,Male ,medicine.medical_specialty ,Obsessive-Compulsive Disorder ,Epidemiologic study ,Adolescent ,MEDLINE ,Patient characteristics ,Datasets as Topic ,Dermatology ,Comorbidity ,Trichotillomania ,Young Adult ,Age Distribution ,medicine ,Humans ,Sex Distribution ,Aged ,Aged, 80 and over ,business.industry ,General Medicine ,Middle Aged ,United States ,Cross-Sectional Studies ,Logistic Models ,Family medicine ,Female ,business ,Selective Serotonin Reuptake Inhibitors - Published
- 2021
67. Portraying Gradients of Structural Complexity in Coral Reefs Using Fine-Scale Depth Profiles
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Lauriane Ribas-Deulofeu, Pierre-Alexandre Château, Vianney Denis, and Chaolun Allen Chen
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Rugosity ,Science ,structural complexity ,Taiwan ,Context (language use) ,Ocean Engineering ,rugosity ,QH1-199.5 ,Aquatic Science ,Oceanography ,Structural complexity ,Transect ,resilience ,Reef ,Water Science and Technology ,geography ,Global and Planetary Change ,geography.geographical_feature_category ,General. Including nature conservation, geographical distribution ,Coral reef ,Benthic zone ,coral reef ,Physical geography ,Scale (map) ,Geology - Abstract
Structural complexity is an important feature to understand reef resilience abilities, through its role in mediating predator-prey interactions, regulating competition, and promoting recruitment. Most of the current methods used to measure reef structural complexity fail to quantify the contributions of fine and coarse scales of rugosity simultaneously, while other methods require heavy data computation. In this study, we propose estimating reef structural complexity based on high-resolution depth profiles to quantify the contributions of both fine and coarse rugosities. We adapted the root mean square of the deviation from the assessed surface profile (Rq) with polynomials. The efficiency of the proposed method was tested on nine theoretical cases and 50 in situ transects from South Taiwan, and compared to both the chain method and the visual rugosity index commonly employed to characterize reef structural complexity. The Rq indices proposed as rugosity estimators in this study consider multiple levels of reef rugosity, which the chain method and the visual rugosity index fail to apprehend. Furthermore, relationships were found between Rq scores and specific functional groups in the benthic community. Indeed, the fine scale rugosity of the South Taiwan reefs mainly comes from biotic components such as hard corals, while their coarse scale rugosity is essentially provided by the topographic variations that reflect the geological context of the reefs. This approach allows identifying the component of the rugosity that could be managed and which could, ultimately, improve strategies designed for conservation.
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- 2021
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68. Extra high superoxide dismutase in host tissue is associated with improving bleaching resistance in 'thermal adapted' and
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Jih-Terng, Wang, Yi-Ting, Wang, Chaolun Allen, Chen, Pei-Jei, Meng, Kwee Siong, Tew, Pei-Wen, Chiang, and Sen-Lin, Tang
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Symbiodiniaceae algae ,Ecology ,Coral bleaching ,fungi ,Marine Biology ,Endozoicomonas ,Biodiversity ,Superoxide dismutase ,biochemical phenomena, metabolism, and nutrition ,Catalase ,Molecular Biology ,Zoology - Abstract
Global warming threatens reef-building corals with large-scale bleaching events; therefore, it is important to discover potential adaptive capabilities for increasing their temperature resistance before it is too late. This study presents two coral species (Platygyra verweyi and Isopora palifera) surviving on a reef having regular hot water influxes via a nearby nuclear power plant that exhibited completely different bleaching susceptibilities to thermal stress, even though both species shared several so-called “winner” characteristics (e.g., containing Durusdinium trenchii, thick tissue, etc.). During acute heating treatment, algal density did not decline in P. verweyi corals within three days of being directly transferred from 25 to 31 °C; however, the same treatment caused I. palifera to lose
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- 2021
69. Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)
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Pierre Alexandre Château, Chaolun Allen Chen, Vianney Denis, and Lauriane Ribas-Deulofeu
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0106 biological sciences ,Environmental Impacts ,010504 meteorology & atmospheric sciences ,Coral bleaching ,Coral ,Effects of global warming on oceans ,Taiwan ,Climate change ,Marine Biology ,01 natural sciences ,Refuge ,General Biochemistry, Genetics and Molecular Biology ,Community shift ,Typhoon ,Reef ,0105 earth and related environmental sciences ,geography ,geography.geographical_feature_category ,Ecology ,010604 marine biology & hydrobiology ,General Neuroscience ,General Medicine ,Coral reef ,Biodiversity ,Oceanography ,Benthic zone ,Medicine ,Environmental science ,General Agricultural and Biological Sciences - Abstract
Over the past few decades, extreme events—such as ocean warming, typhoons, and coral bleaching—have been increasing in intensity and frequency, threatening coral reefs from the physiological to ecosystem level. In the present study, the impacts of rising seawater temperatures, typhoons, and coral bleaching events on benthic communities were seasonally assessed over a 21 month-period, using photo-transects at 11 sites in Kenting National Park (KNP), Taiwan. Between August 2015 and April 2017, seven typhoon events were recorded and in situ seawater temperatures in KNP reached a maximum of 31.2 °C, as opposed to an average maximum SST of 28.8 °C (2007–2016). The state and response of benthic communities to these events were interpreted based on the environmental conditions of KNP. The repeated storms lowered the levels of thermal stress during the 2015–2016 El Niño event and may have mitigated its impact on the Taiwanese coral reefs. However, storm-induced local shifts from coral to macro-algae dominance were observed. Storms may mitigate the negative effects of heatwaves, but the mechanical damage induced by the storms may also decrease the structural complexity of reefs and their associated diversity. Eventually, despite reef persistence, the composition and function of remnant communities may profoundly diverge from those in regions with less active storms.
- Published
- 2021
70. Towards integrated cross-sectoral surveillance of pathogens and antimicrobial resistance: Needs, approaches, and considerations for linking surveillance to action
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Rachael Lappan, Steven L. Chown, Matthew French, Laura Perlaza-Jiménez, Nenad Macesic, Mark Davis, Rebekah Brown, Allen Cheng, Thomas Clasen, Lindus Conlan, Frederick Goddard, Rebekah Henry, Daniel R. Knight, Fuyi Li, Stephen Luby, Dena Lyras, Gaofeng Ni, Scott A. Rice, Francesca Short, Jiangning Song, Andrea Whittaker, Karin Leder, Trevor Lithgow, and Chris Greening
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One Health ,Surveillance ,Antimicrobial Resistance ,Infectious disease ,Environmental sciences ,GE1-350 - Abstract
Pathogenic and antimicrobial-resistant (AMR) microorganisms are continually transmitted between human, animal, and environmental reservoirs, contributing to the high burden of infectious disease and driving the growing global AMR crisis. The sheer diversity of pathogens, AMR mechanisms, and transmission pathways connecting these reservoirs create the need for comprehensive cross-sectoral surveillance to effectively monitor risks. Current approaches are often siloed by discipline and sector, focusing independently on parts of the whole. Here we advocate that integrated surveillance approaches, developed through transdisciplinary cross-sector collaboration, are key to addressing the dual crises of infectious diseases and AMR. We first review the areas of need, challenges, and benefits of cross-sectoral surveillance, then summarise and evaluate the major detection methods already available to achieve this (culture, quantitative PCR, and metagenomic sequencing). Finally, we outline how cross-sectoral surveillance initiatives can be fostered at multiple scales of action, and present key considerations for implementation and the development of effective systems to manage and integrate this information for the benefit of multiple sectors. While methods and technologies are increasingly available and affordable for comprehensive pathogen and AMR surveillance across different reservoirs, it is imperative that systems are strengthened to effectively manage and integrate this information.
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- 2024
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71. Crown-of-thorns starfish outbreak at Taiping Island (Itu Aba), Spratlys, South China Sea
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Ming-Jay Ho, Wei Khang Heng, Ming-Shiou Jeng, Chao-Yang Kuo, Ya-Yi Huang, Chaolun Allen Chen, and Chia-Ying Ko
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Fishery ,Crown-of-thorns starfish ,South china ,Geography ,biology ,Outbreak ,Aquatic Science ,Oceanography ,biology.organism_classification - Published
- 2022
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72. A molecular census of early‐life stage scleractinian corals in shallow and mesophotic zones
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Soto, Derek, primary, Palmas, Stéphane, additional, Ho, Ming‐Jay, additional, Denis, Vianney, additional, and Allen Chen, Chaolun, additional
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- 2021
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73. Population genetics and demography of the coral-killing cyanobacteriosponge
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Savanna Wenhua, Chow, Shashank, Keshavmurthy, James Davis, Reimer, Nicole, de Voogd, Hui, Huang, Jih-Terng, Wang, Sen-Lin, Tang, Peter J, Schupp, Chun Hong, Tan, Hock-Chark, Liew, Keryea, Soong, Beginer, Subhan, Hawis, Madduppa, and Chaolun Allen, Chen
- Abstract
The first occurrence of the cyanobacteriosponge
- Published
- 2021
74. Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral-killing sponge, Terpios hoshinota
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Budhi Hascaryo Iskandar, Wenhua Savanna Chow, Pei-Wen Chiang, Ming-Hui Liao, Tin-Han Shih, Chi-Ming Yang, Hui Huang, Szu-Hsien Lin, Daphne Z. Hoh, Jia-Ho Shiu, Cheng-Yu Yang, Chun Hong James Tan, Yu-Hsiang Chen, Sen-Lin Tang, Hsing-Ju Chen, Euichi Hirose, James Davis Reimer, Chaolun Allen Chen, Hideyuki Yamashiro, and Peter J. Schupp
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biology ,Coral Reefs ,Ruegeria ,Microbiota ,Prochloron ,biology.organism_classification ,Anthozoa ,Cyanobacteria ,Microbiology ,Genome ,Porifera ,Sponge ,Sister group ,Evolutionary biology ,RNA, Ribosomal, 16S ,Candidatus ,Prevalence ,Animals ,Microbiome ,Symbiosis ,Gene ,Ecology, Evolution, Behavior and Systematics - Abstract
Terpios hoshinota is an aggressive, space-competing sponge that kills various stony corals. Outbreaks of this species have led to intense damage to coral reefs in many locations. Here, the first large-scale 16S rRNA gene survey across three oceans revealed that bacteria related to the taxa Prochloron, Endozoicomonas, SAR116, Ruegeria, and unclassified Proteobacteria were prevalent in T. hoshinota. A Prochloron-related bacterium was the most dominant and prevalent cyanobacterium in T. hoshinota. The complete genome of this uncultivated cyanobacterium and pigment analysis demonstrated that it has phycobiliproteins and lacks chlorophyll b, which is inconsistent with the definition of Prochloron. Furthermore, the cyanobacterium was phylogenetically distinct from Prochloron, strongly suggesting that it should be a sister taxon to Prochloron. Therefore, we proposed this symbiotic cyanobacterium as a novel species under the new genus Candidatus Paraprochloron terpiosi. Comparative genomic analyses revealed that 'Paraprochloron' and Prochloron exhibit distinct genomic features and DNA replication machinery. We also characterized the metabolic potentials of 'Paraprochloron terpiosi' in carbon and nitrogen cycling and propose a model for interactions between it and T. hoshinota. This study builds a foundation for the study of the T. hoshinota microbiome and paves the way for better understanding of ecosystems involving this coral-killing sponge.
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- 2021
75. Corrigendum: Quantifying Coral Reef Resilience to Climate Change and Human Development: An Evaluation of Multiple Empirical Frameworks
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Nien-Yun Cheng, Ming-Jay Ho, Colin K. C. Wen, Chao-Yang Kuo, Chaolun Allen Chen, Ashley H. Y. Bang, Kah-Leng Cherh, and Yen-Chia Chen
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0106 biological sciences ,lcsh:QH1-199.5 ,010504 meteorology & atmospheric sciences ,Taiwan ,Climate change ,Ocean Engineering ,Context (language use) ,resilience assessment ,lcsh:General. Including nature conservation, geographical distribution ,Aquatic Science ,Oceanography ,01 natural sciences ,Ecological resilience ,Ecosystem ,coral reef conservation ,lcsh:Science ,Baseline (configuration management) ,Resilience (network) ,Reef ,0105 earth and related environmental sciences ,Water Science and Technology ,Global and Planetary Change ,geography.geographical_feature_category ,business.industry ,ecological resilience ,010604 marine biology & hydrobiology ,Environmental resource management ,Coral reef ,Geography ,lcsh:Q ,business ,marine protected areas - Abstract
The integrity of coral reefs has increasingly been threatened by human development and climate change. As a result, the concept of ecological resilience – an ecosystem’s capability to resist and recover from environmental stressors – has become an important aspect of coral reef conservation. In this study, coral reef resilience was quantitatively scored in Kenting National Park (KNP), Taiwan, using four different assessment frameworks: the first uses the opinions of local reef experts, the second includes metrics specific to the local reef context, the third combines the previous two approaches, and the fourth relies solely on ecological metrics from biodiversity surveys. To evaluate the accuracy of each assessment, the resulting resilience scores were compared with historical coral recovery rates, which served as a proxy for resilience. While each approach to measuring resilience has its merits and drawbacks, the picture of resilience became clearest when a few key indicators were included to reflect core ecosystem processes. Trends in resilience scores varied depending on the makeup of the assessment's indicators, and there was little correlation between the baseline metrics measured using different data collection methods. However, all resilience assessment trends indicated that KNP’s Nanwan area is high in resilience. This is likely due to the effects of local tidally-induced upwelling, which significantly relieve the growing thermal stress placed on surrounding coral communities. Ultimately, the most successful assessments were those that empirically quantified ecological processes and local factors with only a few indicators, rather than broader approaches that measured many indicators. These findings are particularly relevant for reef managers to consider as they develop and employ resilience-based management strategies.
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- 2021
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76. Prevalence, complete genome and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral-killing sponge, Terpios hoshinota
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Pei-Wen Chiang, Szu-Hsien Lin, Cheng-Yu Yang, Hsing-Ju Chen, Jia-Ho Shiu, Yu-Hsiang Chen, Chaolun Allen Chen, Daphne Z. Hoh, Euichi Hirose, Budhi Hascaryo Iskandar, James Davis Reimer, Ming-Hui Liao, Hui Huang, Hideyuki Yamashiro, Wenhua Savanna Chow, Chun Hong James Tan, Sen-Lin Tang, Tin-Han Shih, Chi-Ming Yang, and Peter J. Schupp
- Subjects
Comparative genomics ,Cyanobacteria ,biology ,Phylogenetic tree ,Evolutionary biology ,Ruegeria ,Candidatus ,Prochloron ,Microbiome ,biology.organism_classification ,Genome - Abstract
Terpios hoshinota is a ferocious, space-competing sponge that kills a variety of stony corals by overgrowth. Outbreaks of this species have led to intense coral reef damage and declines in living corals on the square kilometer scale in many geographical locations. Our large-scale 16S rRNA gene survey across three oceans revealed that the core microbiome of T. hoshinota included operational taxonomic units (OTUs) related to Prochloron, Endozoicomonas, Pseudospirillum, SAR116, Magnetospira, and Ruegeria. A Prochloron- related OTU was the most dominant cyanobacterium in T. hoshinota in the western Pacific Ocean, South China Sea, and Indian Ocean. The complete metagenome-assembled genome of the Prochloron-related cyanobacterium and our pigment analysis revealed that this bacterium had phycobiliproteins and phycobilins and lacked chlorophyll b, inconsistent with the iconic definition of Prochloron. Furthermore, the phylogenetic analyses based on 16S rRNA genes and 120 single-copy genes demonstrated that the bacterium was phylogenetically distinct to Prochloron, strongly suggesting that it should be a sister taxon to Prochloron; we therefore proposed this symbiotic cyanobacterium as a novel species under a new genus: Candidatus Paraprochloron terpiosii. With the recovery of the complete genome, we characterized the metabolic potentials of the novel cyanobacterium in carbon and nitrogen cycling and proposed a model for the interaction between Ca. Pp. terpiosi LD05 and T. hoshinota. In addition, comparative genomics analysis revealed that Ca. Paraprochloron and Prochloron showed distinct features in transporter systems and DNA replication.ImportanceThe finding that one species predominates cyanobacteria in T. hoshinota from different geographic locations indicates that this sponge and Ca. Pp. terpiosi LD05 share a tight relationship. This study builds the foundation for T. hoshinota’s microbiome and paves a way for understanding the ecosystem, invasion mechanism, and causes of outbreak of this coral-killing sponge. Also, the first Prochloron-related complete genome enables us to study this bacterium with molecular approaches in the future and broadens our knowledge of the evolution of symbiotic cyanobacteria.
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- 2021
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77. An Indo-Pacific coral spawning database
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David Abrego, Erika Woolsey, Yoko Nozawa, Jean-François Flot, Chieh Jhen Chen, Nur Fadli, Jude Keyse, Mila Grinblat, Eugenia M. Sampayo, Elizaldy A. Maboloc, Gaetan Hoarau, Christopher Doropoulos, Alasdair J. Edwards, Akira Iguchi, Satoshi Nojima, Tom Shlesinger, Choo Zhi Min, Srisakul Piromvaragorn, Selina Ward, Wei Jen Chen, Kareen Vicentuan, Chung Hong Tan, Kate M. Quigley, Zarinah Waheed, Tracy D. Tabalanza, Sakanan Plathong, Tullia Isotta Terraneo, James R. Guest, Davies Austin Spiji, Joshua S. Madin, Syafyudin Yusuf, Karenne Tun, Russel C. Babcock, Gal Eyal, Ching-Fong Chang, Miguel Barbosa, Masayuki Hatta, Matthew R. Nitschke, Vivian R. Cumbo, Emmeline A. Jamodiong, Jeffrey Low, Seiya Kitanobo, Andrew H. Baird, Maria Dornelas, Takuma Mezaki, Kazuhiko Sakai, Gerard F. Ricardo, John A. Burt, Emily J. Howells, Fung Chen Chung, Erin Graham, Charlon A. Ligson, Sze Hoon Gan, Chaolun Allen Chen, Sean R. Connolly, Bette L. Willis, Patrick C. Cabaitan, Peter Harrison, Narinratana Kongjandtre, Lee Eyal-Shaham, Carrie A. Sims, Yossi Loya, Suchana Chavanich, Eneour Puill-Stephan, Andrew G. Bauman, Victor E. Bonito, Rachael M. Woods, Frederic Sinniger, Su Hwei Neo, James True, Leony Sikim, Naoko Isomura, Masaya Morita, Suppakarn Jandang, Jessica Bouwmeester, Che-Hung Lin, Joana Figueiredo, Nina Ann Jin Ho, Elizabeth J. Gomez, Hiromi Yamamoto, Aurelie Moya, Mia O. Hoogenboom, Mariana Álvarez-Noriega, Nataly Gutierrez-Isaza, Chris Simpson, Saki Harii, Hanaka Mera, Chao-Yang Kuo, Gergely Torda, Voranop Viyakarn, Catalina Ramírez-Portilla, University of St Andrews. School of Biology, University of St Andrews. Centre for Biological Diversity, University of St Andrews. Fish Behaviour and Biodiversity Research Group, and University of St Andrews. Marine Alliance for Science & Technology Scotland
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0106 biological sciences ,Statistics and Probability ,Data Descriptor ,Science ,QH301 Biology ,Coral ,Evolution des espèces ,Library and Information Sciences ,computer.software_genre ,010603 evolutionary biology ,01 natural sciences ,Education ,Databases ,QH301 ,Reproductive biology ,Animals ,Océanographie biologique ,ZA4450 ,Indian Ocean ,Marine biology ,GC ,Pacific Ocean ,ZA4450 Databases ,Database ,Conservation biology ,010604 marine biology & hydrobiology ,Reproduction ,Biologie moléculaire ,DAS ,Population ecology ,Anthozoa ,Great barrier reef ,Computer Science Applications ,Geography ,Génétique, cytogénétique ,Systématique des espèces [zoologie] ,GC Oceanography ,Evolutionary ecology ,Statistics, Probability and Uncertainty ,computer ,Indo-Pacific ,Information Systems - Abstract
The discovery of multi-species synchronous spawning of scleractinian corals on the Great Barrier Reef in the 1980s stimulated an extraordinary effort to document spawning times in other parts of the globe. Unfortunately, most of these data remain unpublished which limits our understanding of regional and global reproductive patterns. The Coral Spawning Database (CSD) collates much of these disparate data into a single place. The CSD includes 6178 observations (3085 of which were unpublished) of the time or day of spawning for over 300 scleractinian species in 61 genera from 101 sites in the Indo-Pacific. The goal of the CSD is to provide open access to coral spawning data to accelerate our understanding of coral reproductive biology and to provide a baseline against which to evaluate any future changes in reproductive phenology., info:eu-repo/semantics/published
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- 2021
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78. Reactivity-guided de novo molecular design and high throughput virtual screening of a targeted library of peptidomimetic compounds reveals charge-based structure-activity relationship of potential covalent inhibitors of the main protease of SARS-CoV-2
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Allen Chen, Ayeeshi Poosarla, Kara Tran, Karthikha Sri Indran, Ayush Bajaj, Harsha Raj, Bhavesh Ashok, Varsha Beldona, Kavya Anand, Jeslyn Wu, Karankumar Mageswaran, Kushal Chattopadhyay, Aishwarya Yuvaraj, Pranjal Verma, Andrew Liang, Edward Njoo, Audrey Kwan, Anvi Surapaneni, Stephanie Sun, Krithikaa Premnath, Atri Surapaneni, Ishani Ashok, Aashi Shah, Tanish Sathish, Ria Kolala, and Sarah Su
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0301 basic medicine ,Virtual screening ,Protease ,biology ,Peptidomimetic ,Chemistry ,medicine.medical_treatment ,Active site ,General Medicine ,General Chemistry ,medicine.disease_cause ,Entry into host ,Small molecule ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Biochemistry ,Viral replication ,biology.protein ,medicine ,030217 neurology & neurosurgery ,Coronavirus - Abstract
In December of 2019, a novel coronavirus was first identified in Wuhan, China, and has since spread around the world, leaving a largely unsolved biomedical problem in its wake. Upon entry into host cells, the main protease is essential for the replication of viral RNA, which is what allows the virus to replicate inside humans. Inhibition of the main protease has been investigated as a potential strategy for inhibition of the viral replication cycle. Here, we designed a combinatorial library of small molecules and performed high-throughput virtual screening to identify a series of hit compounds that may serve as potential inhibitors of the main protease. In our design of covalent inhibitors of the coronavirus protease, we modeled a library of 361 peptidomimetic Michael acceptor small molecules, which are designed to engage the nucleophilic cysteine residue in the active site of the protease in an irreversible 1,4-conjugate addition. We then employed a variety of computational tools to determine the binding affinity of our designed compounds when bound to the protease active site, where we determined that cationic side chains are potentially beneficial for inhibition of SARS-CoV-2.
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- 2020
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79. Correction: Keshavmurthy, S., et al. Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan). Journal of Marine Science and Engineering 2019, 7, 338
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Shashank Keshavmurthy, Pei-Jei Meng, Ya-Yi Huang, Rodrigo Carballo-Bolaños, Chao-Yang Kuo, Jih-Terng Wang, and Chaolun Allen Chen
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geography ,geography.geographical_feature_category ,National park ,Ecology ,lcsh:Naval architecture. Shipbuilding. Marine engineering ,Ocean Engineering ,Coral reef ,Term (time) ,lcsh:Oceanography ,n/a ,lcsh:VM1-989 ,lcsh:GC1-1581 ,Resilience (network) ,Water Science and Technology ,Civil and Structural Engineering - Abstract
The authors are sorry for errors in their paper [...]
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- 2020
80. Molecular phylogeny of some coral species from the Persian Gulf
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Michel Pichon, Mahsa Alidoost Salimi, Pargol Ghavam Mostafavi, Parisa Alidoost Salimi, and Chaolun Allen Chen
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0301 basic medicine ,Favites pentagona ,Coral ,ved/biology.organism_classification_rank.species ,Biology ,Pavona decussata ,Pavona cactus ,03 medical and health sciences ,0302 clinical medicine ,Species Specificity ,Genetics ,Animals ,Molecular Biology ,Indian Ocean ,Phylogeny ,Islands ,Phylogenetic tree ,Ecology ,ved/biology ,Platygyra daedalea ,Bayes Theorem ,General Medicine ,biology.organism_classification ,Anthozoa ,030104 developmental biology ,Taxon ,030220 oncology & carcinogenesis ,Molecular phylogenetics - Abstract
As evolutionary relationships among some coral species still remain unclear, studies on unstudied area such as the Persian Gulf (PG), as part of the western Indo-Pacific, may reveal a better understanding of phylogenetic positions and relationships of corals. In the present study, the phylogenetic relationships of eight common coral species (Favites pentagona, Platygyra daedalea, Cyphastrea microphthalma, Siderastrea savignyana, Pavona decussata, Pavona cactus, Goniopora columna, and Goniopora djiboutiensis) collected from two Iranian Islands were compared with the congeneric sequences from the Indo-Pacific (IP) using rDNA region. The result shows that some coral species which were hitherto considered as representatives of widespread species from IP are related to distinct lineages. Further, it appears that morphological convergence between the taxa leads to an underestimation of the real coral species diversity in the PG. The current study is the first attempt to investigate the phylogenetic position of coral species from the PG in comparison to their counterparts from the IP. As conservation planning hinges on the identification of species, taxonomic revisions have to be undertaken in order to obtain a more reliable picture of coral species diversity in the PG.
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- 2020
81. Spatial heterogeneity of coral reef benthic communities in Kenya
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Juliet Furaha Karisa, Chaolun Allen Chen, and David Obura
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0106 biological sciences ,Coral ,Porites ,Marine and Aquatic Sciences ,01 natural sciences ,Montipora ,Geographical Locations ,Multidisciplinary ,geography.geographical_feature_category ,biology ,Ecology ,Coral Reefs ,Chemical Reactions ,Eukaryota ,Coral reef ,Plants ,Habitats ,Chemistry ,Geography ,Community Ecology ,Benthic zone ,Corals ,Physical Sciences ,Medicine ,Bleaching ,Research Article ,Lagoons ,Food Chain ,Algae ,Fringing reef ,Science ,Marine Biology ,010603 evolutionary biology ,Acropora ,Reef ,Community Structure ,Ecosystem ,Spatial Analysis ,010604 marine biology & hydrobiology ,Ecology and Environmental Sciences ,Organisms ,Biology and Life Sciences ,Bodies of Water ,biology.organism_classification ,Kenya ,People and Places ,Africa ,Earth Sciences ,Reefs - Abstract
Spatial patterns of coral reef benthic communities vary across a range of broad-scale biogeographical levels to fine-scale local habitat conditions. This study described spatial patterns of coral reef benthic communities spanning across the 536-km coast of Kenya. Thirty-eight reef sites representing different geographical zones within an array of habitats and management levels were assessed by benthic cover, coral genera and coral colony size classes. Three geographical zones were identified along the latitudinal gradient based on their benthic community composition. Hard coral dominated the three zones with highest cover in the south and Porites being the most abundant genus. Almost all 15 benthic variables differed significantly between geographical zones. The interaction of habitat factors and management levels created a localised pattern within each zone. Four habitats were identified based on their similarity in benthic community composition; 1. Deep-Exposed Patch reef in Reserve areas (DEPR), 2. Deep-Exposed Fringing reefs in Unprotected areas (DEFU), 3. Shallow Fringing and Lagoon reefs in Protected and Reserve areas (SFLPR) and 4. Shallow Patch and Channel reefs (SPC). DEPR was found in the north zone only and its benthic community was predominantly crustose coralline algae. DEFU was found in central and south zones mainly dominated by soft corals, Acropora, Montipora, juvenile corals and small colonies of adult corals. SFLPR was dominated by macroalgae and turf algae and was found in north and central zones. SPC was found across all geographical zones with a benthic community dominated by hard corals of mostly large colonies of Porites and Echinopora. The north zone exhibits habitat types that support resistance properties, the south supports recovery processes and central zone acts as an ecological corridor between zones. Identifying habitats with different roles in reef resilience is useful information for marine spatial planning and supports the process of designing effective marine protected areas.
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- 2020
82. Physiological plasticity of corals to temperature stress in marginal coral communities
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Morgan Beals, Chaolun Allen Chen, Shashank Keshavmurthy, Kwang-Sik Choi, and Hernyi Justin Hsieh
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Environmental Engineering ,Hot Temperature ,010504 meteorology & atmospheric sciences ,Range (biology) ,Coral ,ved/biology.organism_classification_rank.species ,Taiwan ,Climate change ,Subtropics ,010501 environmental sciences ,01 natural sciences ,Acclimatization ,Japonica ,Stress, Physiological ,Republic of Korea ,Environmental Chemistry ,Animals ,Symbiosis ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Islands ,biology ,Ecology ,ved/biology ,Coral Reefs ,Temperature ,Coelastrea aspera ,biology.organism_classification ,Anthozoa ,Pollution ,Adaptation - Abstract
Adaptation and/or acclimatization through various mechanisms have been suggested to help some tropical coral species to overcome temperature-induced bleaching that is intensifying with climate change; however, while much research has been done on the physiological responses of tropical and subtropical corals to stress, little is known about these responses in corals in marginal environments—e.g., high-latitude and non-reefal communities. In this study, we examined the thermal-tolerant physiology of the flowerpot coral, Alveopora japonica, endemic to the high-latitude Jeju Island (33.39°N), South Korea and Oulastrea crispata and Coelastrea aspera from the subtropical non-reefal coral community on the Penghu Islands (23.34°N), Taiwan. Analysis of physiological parameters; photochemical efficiency, Chlorophyll pigment, Symbiodiniaceae cell number and host soluble proteins - showed that A. japonica can survive through a wide range of temperature stresses (10–32 °C) over a period of 8 days without showing signs of bleaching. In addition, corals O. crispata and C. aspera withstood temperature stresses of up to 33 °C and repeated temperature fluctuations without bleaching. Our results indicate that, under large seasonal variations and asymmetrical daily fluctuations in temperature, corals currently living in marginal environments could have thermal plasticity, allowing them to survive in the future climate change scenarios. This study reiterates the importance of studying the eco-physiology of corals that are generally ignored because of their neutral or positive responses to stress.
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- 2020
83. Subepithelial Connective Tissue Grafts to Improve Tissue Biotype Control in Peri-implant Disease: A Case Series
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Peng, Li, De Li, Li, Hua Allen, Chen, and Zhi Hui, Tang
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Connective Tissue ,Gingiva ,Humans ,Peri-Implantitis - Abstract
Three patients diagnosed with peri-implant disease after osseointegration exhibited soft tissue oedema and fistulae. Treatment options for controlling the fistulae were investigated. Free subepithelial connective tissue grafts (SCTGs) and microinvasive surgery were used to improve the soft tissue biotype of the patients with fistulae. After SCTG surgery, the fistulae disappeared. The clinical outcomes were stable and aesthetic outcomes were satisfactory after 3-5 years of follow-up. Based on this study, utilising SCTG to improve the tissue biotype may be an effective clinical approach for controlling fistulae occurring during peri-implant disease.
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- 2020
84. Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleaching
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Shashank Keshavmurthy, Ya-Yi Huang, Chao-Yang Kuo, Chaolun Allen Chen, and Rodrigo Carballo-Bolaños
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0106 biological sciences ,0301 basic medicine ,Hot Temperature ,Acclimatization ,Climate Change ,Coral ,Southern taiwan ,Taiwan ,lcsh:Medicine ,Zoology ,Biology ,01 natural sciences ,Article ,03 medical and health sciences ,Animals ,lcsh:Science ,Symbiosis ,Marine biology ,geography ,Multidisciplinary ,geography.geographical_feature_category ,Coral Reefs ,010604 marine biology & hydrobiology ,Leptoria phrygia ,lcsh:R ,Climate-change ecology ,Symbiodiniaceae ,Coral reef ,Anthozoa ,030104 developmental biology ,lcsh:Q ,Metagenomics - Abstract
Symbiodiniaceae communities in some corals often shuffle or switch after severe bleaching events, one of the major threats to coral survival in a world with climate change. In this study we reciprocally transplanted five Leptoria phrygia colonies between two sites with significantly different temperature regimes and monitored them for 12 months. Our ITS2 amplicon deep sequencing demonstrated that L. phrygia acclimatized to maintain a strong and stable association with Durusdinium D17, D. trenchii, and D. glynnii, but also remained flexible and formed a short-term association with different Cladocopium. Most interestingly, two colonies shuffled between Durusdinium and Cladocopium without the occurrence of bleaching; one colony even switched its dominant Cladocopium after generic shuffling. Both dominant Cladocopium were originally rare with relative abundances as low as 0.024%. This is the first record of adult corals switching dominant symbiont without bleaching.
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- 2020
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85. Specificity trumps flexibility—location-based stable associations between Symbiodiniaceae genera and Platygyra verweyi (Scleractinia; Merulinidae)
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Hwee Sze Tee, Shashank Keshavmurthy, Jih-Terng Wang, Kuo-Wei Kao, and Chaolun Allen Chen
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0106 biological sciences ,Coral bleaching ,Coral ,Symbiodiniaceae genra shuffling ,lcsh:Medicine ,Scleractinia ,Zoology ,Marine Biology ,010603 evolutionary biology ,01 natural sciences ,Acclimatization ,General Biochemistry, Genetics and Molecular Biology ,Platygyra ,03 medical and health sciences ,Reciprocal transplantation ,030304 developmental biology ,0303 health sciences ,biology ,Ecology ,Host (biology) ,General Neuroscience ,lcsh:R ,General Medicine ,biology.organism_classification ,Degree heating weeks ,Nuclear power plant ,Transplantation ,Adaptation ,General Agricultural and Biological Sciences ,Thermal histories - Abstract
This study monitored symbiont communities bi-monthly in native coral cores used in a reciprocal transplantation of the coralPlatygyra verweyiover two years (2014–2016) and samples of mother colonies from three locations with variable thermal regimes; our results show that associating with multiple Symbiodiniaceae genera (Cladocopiumspp. andDurusdiniumspp.) is not a prerequisite for symbiont shuffling.Platygyra verweyiassociates with certain Symbiodiniaceae genera based on location. Results of quantitative real-time PCR indicated small-scale temporal changes in Symbiodiniaceae genera compositions from 2014 to 2016; however, these changes were not enough to invoke shuffling or switching, despite degree heating weeks exceeding 6 °C-weeks in 2014 and 4 °C-weeks in 2015, which usually resulted in substantial coral bleaching. Microsatellite analysis of theP. verweyihost showed no genetic differences among the study locations. Our results suggest thatP. verweyiundergoes long-term acclimatization and/or adaptation based on microgeographic and local environmental conditionsby altering its combinations of associated Symbiodiniaceae. Results also suggest that shuffling might not be as common a phenomenon as it has been given credit for; corals thrive through specific associations, and many corals could still be vulnerable to climate change-induced stress, despite being promiscuous or able to associate with rare and background Symbiodiniaceae genera.
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- 2020
86. Population genetics and demography of the coral-killing cyanobacteriosponge, Terpios hoshinota, in the Indo-West Pacific
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Savanna Wenhua Chow, Shashank Keshavmurthy, James Davis Reimer, Nicole de Voogd, Hui Huang, Jih-Terng Wang, Sen-Lin Tang, Peter J. Schupp, Chun Hong Tan, Hock-Chark Liew, Keryea Soong, Beginer Subhan, Hawis Madduppa, and Chaolun Allen Chen
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General Neuroscience ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Abstract
The first occurrence of the cyanobacteriosponge Terpios hoshinota was reported from coral reefs in Guam in 1973, but was only formally described in 1993. Since then, the invasive behavior of this encrusting, coral-killing sponge has been observed in many coral reefs in the West Pacific. From 2015, its occurrence has expanded westward to the Indian Ocean. Although many studies have investigated the morphology, ecology, and symbiotic cyanobacteria of this sponge, little is known of its population genetics and demography. In this study, a mitochondrial cytochrome oxidase I (COI) fragment and nuclear ribosomal internal transcribed spacer 2 (ITS2) were sequenced to reveal the genetic variation of T. hoshinota collected from 11 marine ecoregions throughout the Indo-West Pacific. Both of the statistical parsimony networks based on the COI and nuclear ITS2 were dominated by a common haplotype. Pairwise FST and Isolation-by-distance by Mantel test of ITS2 showed moderate gene flow existed among most populations in the marine ecoregions of West Pacific, Coral Triangle, and Eastern Indian Ocean, but with a restricted gene flow between these regions and Maldives in the Central Indian Ocean. Demographic analyses of most T. hoshinota populations were consistent with the mutation-drift equilibrium, except for the Sulawesi Sea and Maldives, which showed bottlenecks following recent expansion. Our results suggest that while long-range dispersal might explain the capability of T. hoshinota to spread in the IWP, stable population demography might account for the long-term persistence of T. hoshinota outbreaks on local reefs.
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- 2022
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87. Su1668: ACTIVELY BLEEDING LESIONS ON SMALL BOWEL CAPSULE ENDOSCOPY AND ASSOCIATION WITH ANTITHROMBOTIC MEDICATIONS
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Sofi Damjanovska, Daniel Karb, Allen Chen, Alyssa Lange, and Gerard A. Isenberg
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Hepatology ,Gastroenterology - Published
- 2022
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88. Sa1702: ANGIOECTASIAS FOUND ON SMALL BOWEL CAPSULE ENDOSCOPY AND THEIR ASSOCIATION WITH ANTITHROMBOTIC THERAPY
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Sofi Damjanovska, Daniel Karb, Allen Chen, Alyssa Lange, and Gerard A. Isenberg
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Hepatology ,Gastroenterology - Published
- 2022
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89. P91. Behavioral Impairment and Increased Risk of Parietal-Dominant Alzheimer’s Disease Among World Trade Center Responders
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Allen Chen, Zahinoor Ismail, Frank Mann, Evelyn Bromet, Sean Clouston, and Benjamin Luft
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Biological Psychiatry - Published
- 2022
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90. The Development of Cambodia–China Relation and Its Transition Under the OBOR Initiative
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Shihlun Allen Chen
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050208 finance ,South china ,Economy ,Political science ,0502 economics and business ,05 social sciences ,Arbitration ,050207 economics ,Southeast asian ,China ,Relation (history of concept) ,General Economics, Econometrics and Finance - Abstract
Sino–Khmer relation has been under the spotlight since the South China Sea Arbitration and the second-time failure of the Association of Southeast Asian Nations to issue a communique on siding with...
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- 2018
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91. New Trends in the Practical Deployment of Industrial Wireless: From Noncritical to Critical Use Cases
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Cheng-Jen Allen Chen, Kim Fung Tsang, Zhibo Pang, and Victor Huang
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Engineering ,business.industry ,Best practice ,020208 electrical & electronic engineering ,020206 networking & telecommunications ,02 engineering and technology ,Industrial and Manufacturing Engineering ,Software deployment ,0202 electrical engineering, electronic engineering, information engineering ,NIST ,Wireless ,Use case ,Electronics ,Instrumentation (computer programming) ,Electrical and Electronic Engineering ,Telecommunications ,business ,Wireless sensor network - Abstract
Approximately a decade after their introduction, industrial wireless technologies are on the rise. Recognizing this need, the U.S. National Institute of Standards and Technology (NIST) began working on a best practices operational guide, the Practical Guide to Industrial Wireless Systems Deployment. This guide is currently under development in the NIST Industrial Wireless Systems Technical Working Group (IWSTWG), in collaboration with the IEEE Industrial Electronics Society (IES) Standards Technical Committee (TC) and the IEEE Instrumentation and Measurements Society (IMS) TC-9 committee. This article covers contributions made by IES Standards TC members to the wireless practices and applications relevant for industrial wireless systems in the industrial Internet of Things (IIoT) encompassing noncritical and critical use cases.
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- 2018
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92. Unraveling the Inconsistencies of Cardiac Differentiation Efficiency Induced by the GSK3β Inhibitor CHIR99021 in Human Pluripotent Stem Cells
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Filip Laco, Shaul Reuveny, Tsung Liang Woo, Steve Oh, Qixing Zhong, Christina L. L. Chai, Fahima Jaleel Khan, Sherwin Ting, Allen Chen, and Radoslaw Szmyd
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Pluripotent Stem Cells ,0301 basic medicine ,Programmed cell death ,Cell Survival ,Pyridines ,cardiomyocytes ,Biology ,Biochemistry ,Article ,03 medical and health sciences ,Cyclin D1 ,Genetics ,Humans ,Myocytes, Cardiac ,CHIR99021 ,Induced pluripotent stem cell ,Transcription factor ,Cell Proliferation ,Confluency ,Glycogen Synthase Kinase 3 beta ,Cell Death ,Cell Cycle ,Wnt signaling pathway ,Reproducibility of Results ,Cell Differentiation ,differentiation ,Cell Biology ,β-catenin ,Cell cycle ,Cell biology ,TCF7L1 ,Pyrimidines ,030104 developmental biology ,Cell culture ,Developmental Biology - Abstract
Summary Cardiac differentiation efficiency is hampered by inconsistencies and low reproducibility. We analyzed the differentiation process of multiple human pluripotent stem cell (hPSC) lines in response to dynamic GSK3β inhibition under varying cell culture conditions. hPSCs showed strong differences in cell-cycle profiles with varying culture confluency. hPSCs with a higher percentage of cells in the G1 phase of the cell cycle exhibited cell death and required lower doses of GSK3β inhibitors to induce cardiac differentiation. GSK3β inhibition initiated cell-cycle progression via cyclin D1 and modulated both Wnt signaling and the transcription factor (TCF) levels, resulting in accelerated or delayed mesoderm differentiation. The TCF levels were key regulators during hPSC differentiation with CHIR99021. Our results explain how differences in hPSC lines and culture conditions impact cell death and cardiac differentiation. By analyzing the cell cycle, we were able to select for highly cardiogenic hPSC lines and increase the experimental reproducibility by predicting differentiation outcomes., Highlights • Lineage variety and cell culture density affect the cell cycle in hPSCs • CHIR99021 is cytotoxic to hPSCs with reduced S/G2/M cell-cycle phases • Cardiac differentiation reproducibility depends on cell-cycle consistency in hPSCs • Cell cycle and TCF protein levels modulate CHIR99021-induced differentiation, In this article, Laco and colleagues show that human pluripotent stem cells are characterized by individual cell-cycle profiles. Changes in cell-cycle profiles, mainly due to cell culture density, affect Wnt pathway-induced cardiac differentiation and cell death when GSK3β inhibitors are applied. We show that cell-cycle validation is crucial for stem cell quality and experimental reproducibility.
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- 2018
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93. Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals
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Fukami, Hironobu, Budd, Ann F., Paulay, Gustav, Sole-Cava, Antonio, Allen Chen, Chaolun, Iwao, Kenji, and Knowlton, Nancy
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Author(s): Hironobu Fukami [1, 2]; Ann F. Budd [3]; Gustav Paulay [4]; Antonio Solé-Cava [5]; Chaolun Allen Chen [6]; Kenji Iwao [7]; Nancy Knowlton (corresponding author) [1, 2] Only 17% [...]
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- 2004
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94. Improved erythroid differentiation of multiple human pluripotent stem cell lines in microcarrier culture by modulation of Wnt/β-Catenin signaling
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Tsung Liang Woo, Allen Chen, Steve Oh, Bin-Xia Yang, Zhong Ri Lim, Yuin-Han Loh, Shaul Reuveny, A. Lam, Jaichandran Sivalingam, and Hong Yu Chen
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Pluripotent Stem Cells ,0301 basic medicine ,Erythroblasts ,Cell Culture Techniques ,Wnt β catenin signaling ,Wnt signaling pathway ,Microcarrier ,Cell Differentiation ,Hematology ,Biology ,Cell Line ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Cell culture ,Humans ,Erythropoiesis ,Online Only Articles ,Induced pluripotent stem cell ,Wnt Signaling Pathway ,Biomarkers - Published
- 2018
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95. Student Perceptions of the English Lounge after a Layout Change
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Jo Mynard and Allen Chen
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Student perceptions ,Mathematics education ,General Medicine ,Sociology - Abstract
This research aims to understand how students use English at the Self Access Learning Center (SALC) at Kanda University of International Studies (KUIS). Specifically, the research is focused on the second floor of the SALC which is intended to be an English only space. The new SALC opened in April 2017, but some layout changes were made in September (the start of the second semester) in response to student feedback indicating that the English Lounge was intimidating and difficult to access. The present research investigates whether students use the English Lounge differently since the layout change and their views on how the SALC can further be improved.
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- 2018
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96. Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic island
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Ming-Jay Ho, Derek Soto, Chaolun Allen Chen, Stéphane De Palmas, and Vianney Denis
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Life Cycles ,Coral ,Marine and Aquatic Sciences ,Artificial Gene Amplification and Extension ,Pathology and Laboratory Medicine ,Polymerase Chain Reaction ,Microsatellite Loci ,Geographical Locations ,Larvae ,Medicine and Health Sciences ,Fungal Pathogens ,Islands ,Principal Component Analysis ,education.field_of_study ,Panmixia ,Multidisciplinary ,geography.geographical_feature_category ,Geography ,biology ,Coral Reefs ,Ecology ,Coral reef ,Anthozoa ,Habitat ,Medical Microbiology ,Medicine ,Pathogens ,Research Article ,Asia ,Oceans and Seas ,Science ,Population ,Taiwan ,Marine Biology ,Mycology ,Research and Analysis Methods ,Microbiology ,Gene Types ,Phialophora Verrucosa ,Genetics ,Animals ,Molecular Biology Techniques ,education ,Microbial Pathogens ,Molecular Biology ,Probability ,Evolutionary Biology ,geography ,Population Biology ,Biology and Life Sciences ,Genetic Variation ,biology.organism_classification ,Pocillopora verrucosa ,Genetic Loci ,People and Places ,Earth Sciences ,Reefs ,Biological dispersal ,Pocillopora ,Population Genetics ,Developmental Biology ,Microsatellite Repeats - Abstract
Mesophotic habitats could be sheltered from natural and anthropogenic disturbances and act as reproductive refuges, providing propagules to replenish shallower populations. Molecular markers can be used as proxies evaluating the connectivity and inferring population structure and larval dispersal. This study characterizes population structure as well as horizontal and vertical genetic connectivity of the broadcasting coral Pocillopora verrucosa from Ludao, a small oceanic island off the eastern coast of Taiwan. We genotyped 75 P. verrucosa specimens from three sites (Gongguan, Dabaisha, and Guiwan) at three depth ranges (Shallow: 7–15 m, Mid-depth: 23–30 m, and Deep: 38–45 m), spanning shallow to upper mesophotic coral reefs, with eight microsatellite markers. F-statistics showed a moderate differentiation (FST = 0.106, pPocillopora individuals could be drawn from a single panmictic population. Simulations of recent migration assigned 30 individuals (40%) to a different location from where they were collected. Among them, 1/3 were assigned to deeper locations, 1/3 to shallower populations and 1/3 were assigned to the right depth but a different site. These results suggest high levels of vertical and horizontal connectivity, which could enhance the recovery of P. verrucosa following disturbances around Ludao, a feature that agrees with demographic studies portraying this species as an opportunistic scleractinian.
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- 2021
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97. Immobilization of vitronectin-binding heparan sulfates onto surfaces to support human pluripotent stem cells
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Drew M. Titmarsh, James C.H. Goh, Victor Nurcombe, Sadasivam Murali, Steve Oh, Andre J. van Wijnen, David Robinson, Jason D. Whittle, Gajadhar Bhakta, Lynn Yap, Yu Ming Lim, Robert D. Short, William R. Birch, Muriel Bardor, Lyn Chiin Sim, Allen Chen, Simon M. Cool, and Andre Choo
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0301 basic medicine ,Materials science ,biology ,Biomedical Engineering ,02 engineering and technology ,Heparan sulfate ,021001 nanoscience & nanotechnology ,Biomaterials ,Glycosaminoglycan ,Extracellular matrix ,03 medical and health sciences ,chemistry.chemical_compound ,Surface coating ,030104 developmental biology ,chemistry ,Biochemistry ,Biophysics ,biology.protein ,Vitronectin ,Stem cell ,Surface plasmon resonance ,0210 nano-technology ,Induced pluripotent stem cell - Abstract
Functionalizing medical devices with polypeptides to enhance their performance has become important for improved clinical success. The extracellular matrix (ECM) adhesion protein vitronectin (VN) is an effective coating, although the chemistry used to attach VN often reduces its bioactivity. In vivo, VN binds the ECM in a sequence-dependent manner with heparan sulfate (HS) glycosaminoglycans. We reasoned therefore that sequence-based affinity chromatography could be used to isolate a VN-binding HS fraction (HS9) for use as a coating material to capture VN onto implant surfaces. Binding avidity and specificity of HS9 were confirmed by enzyme-linked immunosorbent assay (ELISA) and surface plasmon resonance (SPR)-based assays. Plasma polymerization of allylamine (AA) to tissue culture-treated polystyrene (TCPS) was then used to capture and present HS9 as determined by radiolabeling and ELISA. HS9-coated TCPS avidly bound VN, and this layered surface supported the robust attachment, expansion, and maintenance of human pluripotent stem cells. Compositional analysis demonstrated that 6-O- and N-sulfation, as well as lengths greater than three disaccharide units (dp6) are critical for VN binding to HS-coated surfaces. Importantly, HS9 coating reduced the threshold concentration of VN required to create an optimally bioactive surface for pluripotent stem cells. We conclude that affinity-purified heparan sugars are able to coat materials to efficiently bind adhesive factors for biomedical applications. © 2017 Wiley Periodicals, Inc. J Biomed Mater Res Part B: Appl Biomater, 106B: 1887-1896, 2018.
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- 2017
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98. A functional approach to the structural complexity of coral assemblages based on colony morphological features
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Chao-Yang Kuo, Nicolas Sturaro, Chaolun Allen Chen, Vianney Denis, and Lauriane Ribas-Deulofeu
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0106 biological sciences ,Coral ,Biodiversity ,lcsh:Medicine ,Biology ,010603 evolutionary biology ,01 natural sciences ,Article ,Structural complexity ,Animals ,Ecosystem ,lcsh:Science ,Reef ,geography ,Multidisciplinary ,geography.geographical_feature_category ,Ecology ,Coral Reefs ,010604 marine biology & hydrobiology ,fungi ,lcsh:R ,technology, industry, and agriculture ,Coral reef ,biochemical phenomena, metabolism, and nutrition ,Anthozoa ,Phenotype ,Habitat ,Indonesia ,population characteristics ,lcsh:Q ,Species richness ,geographic locations - Abstract
Colony morphological features is among the best predictor of the scleractinian coral’s function in reef ecosystems. However, morphological traits are categorical and to convert this information into a quantitative value as well as estimate their influence on ecosystem process remain a challenge. Here, we propose a trait-based approach to quantify morphological diversity and assess the structural complexity of the habitat provided by corals. We used a previously published dataset that is related to a bleaching event that affected the coral reef off Tikus Island in Indonesia in 1983. We found clear signs of recovery of the coral assemblage’s complexity toward pre El Niño conditions five years after the event. Independent of the change observed in species richness, this return in structural complexity was accompanied by a global decrease in species number associated with each particular morphological entity (Functional Redundancy) and an increase in the number of single-species entities (Functional Vulnerability). Together with species loss, we show an overall functional erosion of the coral assemblage and suggest that the role of the coral reef habitat could be strongly imperiled under repeated or synergistic disturbances. This approach offers an opportunity for a better understanding of coral responses to natural and anthropogenic disturbances.
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- 2017
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99. Immature Midbrain Dopaminergic Neurons Derived from Floor‐Plate Method Improve Cell Transplantation Therapy Efficacy for Parkinson's Disease
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Shaoping Xie, Shunhui Wei, Mei-Chih Liao, Allen Chen, Shaul Reuveny, Steve Oh, Walter Hunziker, Li Zeng, Zhi Dong Zhou, Lifeng Qiu, and Eng-King Tan
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0301 basic medicine ,Male ,Pathology ,medicine.medical_specialty ,Parkinson's disease ,Neurodegeneration / Neurological Disorders ,Neurogenesis ,Floor‐plate ,Mice, SCID ,Biology ,Cell therapy ,03 medical and health sciences ,Mice ,Translational Research Articles and Reviews ,Neural Stem Cells ,Mesencephalon ,Mice, Inbred NOD ,Tissue Engineering and Regenerative Medicine ,medicine ,Animals ,Humans ,Progenitor cell ,Embryonic Stem Cells ,Cells, Cultured ,Floor plate ,Transplantation ,Parkinson's Disease ,Dopaminergic Neurons ,Dopaminergic ,Parkinson Disease ,Cell Biology ,General Medicine ,medicine.disease ,Embryonic stem cell ,Neural/Progenitor Stem Cells ,030104 developmental biology ,Midbrain dopaminergic neurons ,Differentiation ,Cancer research ,Tyrosine hydroxylase ,Stem cell ,Developmental Biology ,Stem Cell Transplantation - Abstract
Recent reports have indicated human embryonic stem cells-derived midbrain dopamine (mDA) neurons as proper cell resources for use in Parkinson's disease (PD) therapy. Nevertheless, no detailed and systematic study has been conducted to identify which differentiation stages of mDA cells are most suitable for transplantation in PD therapy. Here, we transplanted three types of mDA cells, DA progenitors (differentiated in vitro for 16 days [D16]), immature DA neurons (D25), and DA neurons (D35), into PD mice and found that all three types of cells showed high viability and strong neuronal differentiation in vivo. Both D25 and D35 cells showed neuronal maturation and differentiation toward TH+ cells and, accordingly, satisfactory behavioral functional recovery. However, transplanted D16 cells were less capable of producing functional recovery. These findings provide a valuable guideline for standardizing the differentiation stage of the transplantable cells used in clinical cell therapy for PD.
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- 2017
100. Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China Sea
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Mei Lin Neo, James Davis Reimer, Maria E. A. Santos, Chaolun Allen Chen, Keryea Soong, and Hiroki Kise
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0106 biological sciences ,Hexacorallia ,Cnidaria ,geography ,South china ,geography.geographical_feature_category ,Ecology ,biology ,010604 marine biology & hydrobiology ,Biodiversity ,Atoll ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Taxon ,Oceanography ,Anthozoa ,Animal Science and Zoology ,Zoantharia ,Ecology, Evolution, Behavior and Systematics - Abstract
Dongsha Atoll is the largest coral atoll in the South China Sea (SCS), and is expected to harbor high levels of biodiversity as the SCS is located adjacent to the recognized center of maximum marine biodiversity in the central Indo-Pacific (CIP). However, due to its relative isolation, the biodiversity of Dongsha Atoll has not yet been well investigated for most marine taxa. In this study, we report on findings from our survey in 2016 that focused on the order Zoantharia, for which only sporadic previous reports exist from the SCS. Our results indicate some species such as Palythoa tuberculosa are very common around Dongsha Atoll, as well as the presence of at least three undescribed species, including one species only found thus far at the atoll. Overall, we recorded 16 species of Zoantharia from Dongsha Atoll, bringing the total number of zoantharian species in the SCS to 22, close to numbers reported from the CIP (=24 spp.) and southern Japan (=28 spp.). These findings demonstrate the importance of protecting the biodiversity of Dongsha Atoll, and also, given the limited survey coverage, the potential for undiscovered biodiversity in the SCS.
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- 2017
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