316 results on '"Ali MY"'
Search Results
52. In Vitro Screening of two Flavonoid Compounds Isolated from Cassia alata L. Leaves for Fungicidal Activities
- Author
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Rahman, MS, primary, Ali, MY, primary, and Ali, MU, primary
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- 1970
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53. Seroprevalence of Mycoplasma gallisepticum infection in chicken in the greater Rajshahi district of Bangladesh
- Author
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Hossain, KMM, primary, Ali, MY, primary, and Haque, MI, primary
- Published
- 1970
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54. Short Course Palliative Radiotherapy in Locally Advanced Squamous Cell Carcinoma of Head and Neck
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Ali, MY, primary, Alam, MSS, primary, Mannan, MA, primary, Asaduzzaman, AKM, primary, Khan, MA, primary, and Islam, SMJ, primary
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- 1970
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55. Studies on the Lipid and Glyceride Compositions of Cassia alata Seed Oil
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Rahman, MS, primary, Ali, MY, primary, Ali, MU, primary, and Hasan, AJM Moynul, primary
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- 1970
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56. Prospective Study of Bronchial Asthma
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Halim, A, primary, Alam, T, primary, Ali, MY, primary, Islam, MMSU, primary, Ahammad, F, primary, Rahman, SH, primary, and Barman, RC, primary
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- 1970
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57. "Lutembacher's Syndrome" - A Case Report
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Ali, SY, primary, Rahman, M, primary, Islam, M, primary, Barman, RC, primary, Ali, MY, primary, and Islam, MMSU, primary
- Published
- 1970
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58. Aetiology Of Pyrexia With Hepatosplenomegaly: Study Of 50 Cases In MMCH (Bangladesh)
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Ahammad, F, primary, Ali, MY, primary, Rahman, SH, primary, Fattah, SA, primary, Alam, MT, primary, Nahar, S, primary, and Hassan, MU, primary
- Published
- 1970
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59. Carbide Ripened Fruits- A Recent Health Hazard
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Fattah, SA, primary and Ali, MY, primary
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- 1970
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60. Comparative growth and morphometric assessment between cultures of wild and hatchery-produced mud crabs
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Sarower, MG, Mahmud-Al-Hasan, M, Rahman, MS, Hasan, MM, Ahmmed, Mirja, Ali, MY, Giteru, SG, and Banu, GR
- Published
- 2021
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61. Geophysical imaging of ophiolite structure in the United Arab Emirates
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Brook Keats, Simone Pilia, Mohammed Y. Ali, Michael P. Searle, Anthony Watts, Tyler K. Ambrose, Ali, MY [0000-0001-7502-3897], Watts, AB [0000-0002-2198-2942], Apollo - University of Cambridge Repository, Ali, M, Watts, A, Searle, M, Keats, B, Pilia, S, and Ambrose, T
- Subjects
010504 meteorology & atmospheric sciences ,Science ,General Physics and Astronomy ,3705 Geology ,sub-02 ,010502 geochemistry & geophysics ,Ophiolite ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Article ,semail ophiolite ,Paleontology ,Continental margin ,Oceanic crust ,Semail Ophiolite ,Thrust fault ,lcsh:Science ,0105 earth and related environmental sciences ,geography ,Multidisciplinary ,geography.geographical_feature_category ,Structural geology ,Tectonics ,Eurasian Plate ,Crust ,37 Earth Sciences ,General Chemistry ,Sedimentary basin ,Geophysics ,lcsh:Q ,3706 Geophysics ,Geology - Abstract
The Oman-United Arab Emirates ophiolite has been used extensively to document the geological processes that form oceanic crust. The geometry of the ophiolite, its extension into the Gulf of Oman, and the nature of the crust that underlies it are, however, unknown. Here, we show the ophiolite forms a high velocity, high density, >15 km thick east-dipping body that during emplacement flexed down a previously rifted continental margin thereby contributing to subsidence of flanking sedimentary basins. The western limit of the ophiolite is defined onshore by the Semail thrust while the eastern limit extends several km offshore, where it is defined seismically by a ~40–45°, east-dipping, normal fault. The fault is interpreted as the southwestern margin of an incipient suture zone that separates the Arabian plate from in situ Gulf of Oman oceanic crust and mantle presently subducting northwards beneath the Eurasian plate along the Makran trench., The Semail ophiolite provides evidence for geological processes that form oceanic crust, however, its deep structure remains debated. Here, the authors use geophysical imaging to determine that the ophiolite is bound by a thrust fault in the west, and a normal fault in the east, bounding a rapidly subsiding basin, implying the ophiolite may not be rooted in the Gulf of Oman crust.
- Published
- 2020
62. A new insight of blood vs. buccal DNA methylation in the forensic identification of monozygotic triplets.
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El-Hossary NM, El-Desouky MA, Sabry GM, Omar MF, Ali MY, Elzayat MG, Hassan RE, Mohamed RH, and Rashidi FB
- Abstract
The case of the monozygotic (MZ) twin as a suspect demonstrates a practical problem in forensic casework. As the MZ twins are genetically identical, they share the same short tandem repeat (STR) profile. Many studies showed that older MZ twins have significant differences in overall content and genomic distribution of methylation between them. However, studies addressing the investigation of epigenetic MZ triplet differentiation in various forensic reference materials are lacking. Here, one triplet set of Egyptian MZ twins was used as an analog to a forensic case. The genome-wide methylation analysis was performed via the new Human Methylation EPIC BeadChip array. Following normalization methods, potential differentially methylated positions (DMPs) were discovered. This resulted in the detection of 24 potential DMPs in reference-type blood DNA and 11 potential DMPs in reference-type buccal DNA. Then, the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses were performed to show the associated biological functions. Our findings revealed that the 35 potential DMPs were enriched in 283 significant GO terms. These terms are mainly enriched in the immune system. Overall, this study demonstrates the general feasibility of epigenetic MZ triplet differentiation in the forensic context and highlights that some potential DMPs identified in blood DNA were not informative in buccal DNA. This is due to various reasons, including the tissue specificity of DNA methylation., Competing Interests: Declaration of Competing Interest All authors declare that there are no any competing financial interests in relation to this work., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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63. Development of Tetrahydroquinoline-Based Inhibitors for Chronic Pain.
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Patel KV, Gadotti VM, Garcia-Caballero A, Antunes FTT, Ali MY, Zamponi GW, and Derksen DJ
- Abstract
Chronic pain affects a substantial portion of the population, posing a significant health challenge. Current treatments often come with limitations and side effects, necessitating novel therapeutic approaches. Our study focuses on disrupting the Cav3.2-USP5 interaction as a strategy for chronic pain management. Through structure-activity relationship studies of a tetrahydroquinoline (THQ) scaffold, we identified a family of lead molecules that demonstrated potent inhibition of the Cav3.2-USP5 interaction. In vitro pharmacokinetic assessments and in vivo studies support the efficacy and drug-like properties of the lead compounds in mouse models of acute and chronic pain. Dependence on the Cav3.2 channels was validated in Cav3.2 null mice, consistent with the proposed mode of action of these small molecules. These findings provide a novel chronic pain treatment strategy, highlighting the potential of these small molecules for further development.
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- 2024
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64. Polyaniline-based bovine serum albumin imprinted electrochemical sensor for ultra-trace-level detection in clinical and food safety applications.
- Author
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Ting WT, Ali MY, Mitea V, Wang MJ, and Howlader MMR
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- Animals, Cattle, Biosensing Techniques methods, Limit of Detection, Milk chemistry, Molecularly Imprinted Polymers chemistry, Aniline Compounds chemistry, Electrochemical Techniques methods, Food Safety methods, Molecular Imprinting methods, Serum Albumin, Bovine chemistry
- Abstract
Monitoring bovine serum albumin (BSA) at ultra-low levels is crucial for clinical and food safety applications, as it plays a significant role in identifying various health conditions and potential risks, necessitating fast, trace-level detection of BSA. This study proposes an approach to address these challenges by employing molecularly imprinted polymer (MIP) to develop an ultra-trace-level and cost-effective BSA sensing platform. The MIP electrochemical sensor was developed using polyaniline (PANI) combined with the protein crosslinker glutaraldehyde (GA) to optimize BSA surface imprinting in the MIP. As a result, the sensor achieves a sensitivity of 1.24 μA/log(pg/mL), with a picomolar detectable limit of 2.3 pg/mL (0.035 pM) and a wide detection range from 20 pg/mL to 200,000 pg/mL (0.303 pM to 3030 pM), making it suitable for clinical and food safety applications. Additionally, the study explores the interaction between an acidic surfactant protein eluent (acetic acid with sodium dodecyl sulfate, AcOH-SDS) and BSA vacant sites, enhancing recognition and re-binding. The PANI-based MIP sensor demonstrates initial feasibility and practicality in commercial milk and real human serum, opening avenues for early disease detection and ensuring food safety in BSA-related immune responses., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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65. A comprehensive review on biological funnel mechanism in lignin valorization: Pathways and enzyme dynamics.
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Gao J, Ali MY, Kamaraj Y, Zhang Z, Weike L, Sethupathy S, and Zhu D
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- Biofuels, Lignin metabolism, Metabolic Networks and Pathways, Bacteria metabolism, Bacteria enzymology
- Abstract
Lignin, a significant byproduct of the paper and pulp industry, is attracting interest due to its potential utilization in biomaterial-based sectors and biofuel production. Investigating biological methods for converting lignin into valuable products is crucial for effective utilization and has recently gained growing attention. Several microorganisms effectively decomposed low molecular weight lignins, transforming them into intermediate compounds via upper and lower metabolic pathways. This review focuses on assessing bacterial metabolic pathways involved in the breakdown of lignin into aromatic compounds and their subsequent utilization by different bacteria through various metabolic pathways. Understanding these pathways is essential for developing efficient synthetic metabolic systems to valorize lignin and obtain valuable industrial aromatic chemicals. The concept of "biological funneling," which involves examining key enzymes, their interactions, and the complex metabolic pathways associated with lignin conversion, is crucial in lignin valorization. By manipulating lignin metabolic pathways and utilizing biological routes, many aromatic compounds can be synthesized within cellular factories. Although there is insufficient evidence regarding the complete metabolism of polyaromatic hydrocarbons by particular microorganisms, understanding lignin-degrading enzymes, regulatory mechanisms, and interactions among various enzyme systems is essential for optimizing lignin valorization. This review highlights recent advancements in lignin valorization, bio-funneling, multi-omics, and analytical characterization approaches for aromatic utilization. It provides up-to-date information and insights into the latest research findings and technological innovations. The review offers valuable insights into the future potential of biological routes for lignin valorization., (Copyright © 2024 Elsevier GmbH. All rights reserved.)
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- 2024
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66. Directional co-immobilization of artificial multimeric-enzyme complexes as a robust biocatalyst for biosynthesis curcumin glucosides and regeneration of UDP-glucose.
- Author
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Ali MY, Gao J, Zhang Z, Hossain MM, Sethupathy S, and Zhu D
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- Bacillus subtilis enzymology, Glucosides chemistry, Glucosides metabolism, Temperature, Enzyme Stability, Hydrogen-Ion Concentration, Arabidopsis enzymology, Nickel chemistry, Magnetite Nanoparticles chemistry, Enzymes, Immobilized chemistry, Enzymes, Immobilized metabolism, Uridine Diphosphate Glucose chemistry, Uridine Diphosphate Glucose metabolism, Curcumin chemistry, Biocatalysis
- Abstract
Site-directed protein immobilization allows the homogeneous orientation of proteins while maintaining high activity, which is advantageous for various applications. In this study, the use of SpyCatcher/SpyTag technology and magnetic nickel ferrite (NiFe
2 O4 NPs) nanoparticles were used to prepare a site-directed immobilization of BsUGT2m from Bacillus subtilis and AtSUSm from Arabidopsis thaliana for enhancing curcumin glucoside production with UDP-glucose regeneration from sucrose and UDP. The immobilization of self-assembled multienzyme complex (MESAs) enzymes were characterized for immobilization parameters and stability, including thermal, pH, storage stability, and reusability. The immobilized MESAs exhibited a 2.5-fold reduction in UDP consumption, enhancing catalytic efficiency. Moreover, the immobilized MESAs demonstrated high storage and temperature stability over 21 days at 4 °C and 25 °C, outperforming their free counterparts. Reusability assays showed that the immobilized MESAs retained 78.7 % activity after 10 cycles. Utilizing fed-batch technology, the cumulative titer of curcumin 4'-O-β-D-glucoside reached 6.51 mM (3.57 g/L) and 9.45 mM (5.18 g/L) for free AtSUSm/BsUGT2m and immobilized MESAs, respectively, over 12 h. This study demonstrates the efficiency of magnetic nickel ferrite nanoparticles in co-immobilizing enzymes, enhancing biocatalysts' catalytic efficiency, reusability, and stability., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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67. Dual-layer nanofibrous PCL/gelatin membrane as a sealant barrier to prevent postoperative pancreatic leakage.
- Author
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Shanto PC, Tae H, Ali MY, Jahan N, Jung HI, and Lee BT
- Abstract
Post-operative pancreatic leakage is a severe surgical complication that can cause internal bleeding, infections, multiple organ damage, and even death. To prevent pancreatic leakage and enhance the protection of the suture lining and tissue regeneration, a dual-layer nanofibrous membrane composed of synthetic polymer polycaprolactone (PCL) and biopolymer gelatin was developed. The fabrication of this dual-layer (PGI-PGO) membrane was achieved through the electrospinning technique, with the inner layer (PGI) containing 2% PCL (w/v) and 10% gelatin (w/v), and the outer layer (PGO) containing 10% PCL (w/v) and 10% gelatin (w/v) in mixing ratios of 2:1 and 1:1, respectively. Experimental results indicated that a higher gelatin content reduced fiber diameter enhanced the hydrophilicity of the PGI layer compared to the PGO layer, improved the membrane's biodegradability, and increased its adhesive properties. In vitro biocompatibility assessments with L929 fibroblast cells showed enhanced cell proliferation in the PGI-PGO membrane. In vivo studies confirmed that the PGI-PGO membrane effectively protected the suture line without any instances of leakage and promoted wound healing within four weeks post-surgery. In conclusion, the nanofibrous PGI-PGO membrane demonstrates a promising therapeutic potential to prevent postoperative pancreatic leakage.
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- 2024
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68. Numerical investigation of MHD mixed convection in an octagonal heat exchanger containing hybrid nanofluid.
- Author
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Ali MY, Islam S, Alim MA, Biplob RA, and Islam MZ
- Abstract
Nowadays, the advancement of heat transmission for the heat exchanger device is an important field of research for many researchers. In this work, a numerical study has been conducted to investigate the thermal performance of a mixed convective flow through the octagonal heat exchanger covered by hybrid nanofluid (Cu-TiO
2 -H2 O). A magnetic field has been introduced inside the cavity to investigate the mixed convective hydrodynamics heat flow characteristics. The nanofluid cores absorb/release energy to manage heat transmission by increasing or decreasing inside the cavity domain as the host fluid and dispersed hybrid nanofluid circulate within the cavity. After transforming the governing equations into a generalized, non-dimensional formulation, the finite element approach is utilized to solve the associated equations. Additionally, response surface methodology is also applied to test the responses of the associated factors. Heat transport was examined in relation to the effects of nanofluids fusion temperature, boundary wall properties, Reynolds number, Hartmann number and nanoparticle volume fractions. The outcomes of this study are analysed by measuring streamline profiles, isotherms, average Nusselt number, velocity profile, and 2D and 3D response surfaces of the computational domain. The underlying flow controlling parameters for instance Reynolds number (10 ≤ Re ≤ 200), Hartmann number (0 ≤ Ha ≤100), and nanoparticle volume fractions (0 ≤ ϕ ≤ 0.1), the influences have been considered. The findings also reveal that the thermal performance is being boosted due to augmentation of Re and ϕ, but reverse behavior is noticed for Ha . Furthermore, the response surfaces obtained from response surfaces methodology express that the Re and ϕ have shown positive influence, and Ha has shown negative influence on Nuav . Utilizing a hybrid nanofluid of Cu-TiO2 -H2 O increases the heat transfer capacity of water to 25.75 %. Moreover, the findings could guide to design of a mixed convective heat exchanger for industrial purposes., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)- Published
- 2024
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69. Modulation of dielectric and antibacterial properties of Zn 0.5 Mn 0.5 O nanoparticles by post growth annealing method.
- Author
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Zeng C, Alsaiari NS, Saif MJ, Junaid Dilshad M, Akhtar TM, Isram M, Ali A, Younus S, Alomayrah N, Al-Buriahi MS, Mahmood K, and Ali MY
- Abstract
In this manuscript, we have investigated the dielectric and antibacterial potential of hydrothermally synthesized ZnMnO nanoparticles. The synthesized nanoparticles were annealed at various temperatures ranging from 450 to 650 °C with a step of 50 °C to modulate the structural, vibrational, dielectric, and antibacterial properties. XRD data confirmed the hexagonal structure of the synthesized samples and crystalline size was decreased to 4.8 nm at annealing temperature 600 °C. The lattice structure was further verified by Raman spectroscopy measurements, which strongly verified the XRD data due the presence of ZnMnO vibrational modes. The dielectric measurements revealed that the dielectric constant and los tangent were found to be increased with the increase annealing temperature and decreased with frequency, while a.c conductivity has an increasing trend with both parameters (temperature and frequency). The plot of real and complex parts of impedance against frequency demonstrated that both parameters decrease with the increased in frequency. But when we analyzed the behavior of the real part of impedance against the annealing temperature, a degradation in real part behavior is observed. The antibacterial activity of ZnMnO nanoparticles was determined by using the disc diffusion method against E. coli bacteria, which was grown on a Petri dish at room temperature for 24 h. This observation revealed that the samples annealed at 450 °C and 550 °C show remarkable antibacterial sensitivity as compared to other samples. It is concluded that crystalline size of 20 nm is found to be optimal value for good anti-baterial behavior., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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70. Determinants of interactions of a novel next-generation gabapentinoid NVA1309 and mirogabalin with the Cavα2δ-1 subunit.
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Souza IA, Gandini MA, Ali MY, Kricek F, Skouteris G, and Zamponi GW
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- Humans, Animals, Protein Binding, Protein Subunits metabolism, Protein Subunits chemistry, HEK293 Cells, gamma-Aminobutyric Acid metabolism, Cell Membrane metabolism, Cell Membrane drug effects, Calcium Channels, N-Type metabolism, Calcium Channels, N-Type genetics, Pregabalin pharmacology, Calcium Channels metabolism, Bridged Bicyclo Compounds, Gabapentin pharmacology
- Abstract
NVA1309 is a non-brain penetrant next-generation gabapentinoid shown to bind Cavα2δ at R243 within a triple Arginine motif forming the binding site for gabapentin and pregabalin. In this study we have compared the effects of NVA1309 with Mirogabalin, a gabapentinoid drug with higher affinity for the voltage-gated calcium channel subunit Cavα2δ-1 than pregabalin which is approved for post-herpetic neuralgia in Japan, Korea and Taiwan. Both NVA1309 and mirogabalin inhibit Cav2.2 currents in vitro and decrease Cav2.2 plasma membrane expression with higher efficacy than pregabalin. Mutagenesis of the classical binding residue arginine R243 and the newly identified binding residue lysine K615 reverse the effect of mirogabalin on Cav2.2 current, but not that of NVA1309., (© 2024. The Author(s).)
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- 2024
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71. A low-profile 3-D printable metastructure for performance improvement of aperture antennas.
- Author
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Ali MY, Lalbakhsh A, Koziel S, Golunski L, Ahmed F, and Asadnia M
- Abstract
In order to increase the radiation performance of aperture-type antennas, this paper demonstrates a low-profile, planar, single-layer, three-dimensional (3-D) printable metastructure. The proposed hybridized metastructure is highly transparent as it is made out of novel hybrid meta-atoms having transmission coefficient magnitudes greater than - 0.72 dB and fully complies with the near-field phase transformation principle. The hybridized design approach makes the metastructure planar, low-profile, light in weight, and compatible with additive printing technology. For the proof-of-concept, such metastructure is developed and numerically verified to enhance the radiation performance of a resonant cavity antenna (RCA). With the proposed metastructure, the peak directivity of the RCA is improved by 8.6 dBi (from 11.4 dBi to 20 dBi) at the operating frequency of 12.4 GHz. The aperture efficiency and 3-dB directivity bandwidth of the RCA with the metastructure are 41.46% and 16.5%, respectively. Using readily accessible thermoplastics or polymers and copper with cost-effective fused deposition modeling (FDM) 3-D printing technology, the proposed planar hybridized metastructure can be prototyped commercially., (© 2024. The Author(s).)
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- 2024
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72. Cross study analyses of SEND data: toxicity profile classification.
- Author
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Carfagna MA, Ahmed CS, Butler S, Fukushima T, Houser W, Jensen N, Paisley B, Leuenroth-Quinn S, Snyder K, Vispute S, Wang W, and Ali MY
- Subjects
- Animals, Databases, Factual, Toxicology methods, Humans, Male, Toxicity Tests methods
- Abstract
A SEND toxicology data transformation, harmonization, and analysis platform were created to improve the identification of unique findings related to the intended target, species, and duration of dosing using data from multiple studies. The lack of a standardized digital format for data analysis had impeded large-scale analysis of in vivo toxicology studies. The CDISC SEND standard enables the analysis of data from multiple studies performed by different laboratories. This work describes methods to analyze data and automate cross-study analysis of toxicology studies. Cross-study analysis can be used to understand a single compound's toxicity profile across all studies performed and/or to evaluate on-target versus off-target toxicity for multiple compounds intended for the same pharmacological target. This work involved development of data harmonization/transformation strategies to enable cross-study analysis of both numerical and categorical SEND data. Four de-identified SEND datasets from the BioCelerate database were used for the analyses. Toxicity profiles for key organ systems were developed for liver, kidney, male reproductive tract, endocrine system, and hematopoietic system using SEND domains. A cross-study analysis dashboard with a built-in user-defined scoring system was created for custom analyses, including visualizations to evaluate data at the organ system level and drill down into individual animal data. This data analysis provides the tools for scientists to compare toxicity profiles across multiple studies using SEND. A cross-study analysis of 2 different compounds intended for the same pharmacological target is described and the analyses indicate potential on-target effects to liver, kidney, and hematopoietic systems., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Society of Toxicology.)
- Published
- 2024
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73. Spray-Flame Synthesis of NASICON-Type Rhombohedral (α) Li 1+x Y x Zr 2-x (PO 4 ) 3 [x = 0-0.2] Solid Electrolytes.
- Author
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Ali MY, Chen T, Orthner H, and Wiggers H
- Abstract
Since solid electrolytes have a broad electrochemical stability window, are exceptionally electrochemically stable against Li metal, and function as a physical separator to prevent dendrite growth, they are at the forefront of alternate possibilities, further increasing the stability and energy density of Li-ion batteries. NASICON-type electrolytes are a promising candidate due to their negligible moisture sensitivity, which results in outstanding stability and a lower probability of Li
2 CO3 passivity under the ambient atmosphere. However, one of the most promising representatives, Li1+x Yx Zr2-x (PO4 )3 (LYZP), has multiple stable phases with significant variation in their corresponding Li-ion conductivity. In this paper, we have successfully synthesized the highly ionically conductive rhombohedral phase of LYZP via spray-flame synthesis. Two different solvent mixtures (e.g., 2-ethyl hexanoic acid/ethanol, propanol/propanoic acid) were chosen to explore the effect of precursor composition and combustion enthalpy on the phase composition of the nanoparticle. The as-synthesized nanoparticles from spray-flame synthesis consisted of the crystalline tetragonal zirconia (t-ZrO2 ) phase, while lithium, yttrium, and phosphate were present on the nanoparticles' surface as amorphous phases. However, a short annealing step (1 h) was sufficient to obtain the NASICON phase. Moreover, we have shown the gradual phase conversion from orthorhombic β phase to rhombohedral α phase as the annealing temperature increased from 700 °C to 1300 °C (complete removal of β phase). In this context, Y3+ doping was also crucial, along with the appropriate solvent mixture and annealing temperature, for obtaining the much-desired rhombohedral α phase. Further, 0.2 at% Y3 + doping was added to the solvent mixture of 2-ethyl hexanoic acid/ethanol, and annealing at 1300 °C for 1 h resulted in a high ionic conductivity of 1.14∙10-5 S cm-1 .- Published
- 2024
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74. Repeated Peritonitis in a Peritoneal Dialysis Patient: An Unusual Case of Bacillus licheniformis With Vancomycin Failure Despite Sensitivity.
- Author
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Ali MY, Fadul A, Ali MO, and Mohamed MY
- Abstract
Bacillus licheniformis ( B. licheniformis ) is an aerobic, gram-positive, spore-forming rod typically found in soil, decaying organic matter, vegetables, and water, and occasionally part of normal gut flora. This report highlights a case of unusual repeated peritonitis caused by B. licheniformis , with three episodes occurring over six months, all of which were sensitive to vancomycin yet presented an unclear cause for recurrence. Peritonitis represents a significant cause of mortality, hospitalization, and failure of peritoneal dialysis catheters, leading to forced transitions to hemodialysis. The rarity of B. licheniformis as a pathogen in human infections emphasizes the critical need for precise microbial identification and customized therapeutic strategies., Competing Interests: Human subjects: Consent was obtained or waived by all participants in this study. Conflicts of interest: In compliance with the ICMJE uniform disclosure form, all authors declare the following: Payment/services info: All authors have declared that no financial support was received from any organization for the submitted work. Financial relationships: All authors have declared that they have no financial relationships at present or within the previous three years with any organizations that might have an interest in the submitted work. Other relationships: All authors have declared that there are no other relationships or activities that could appear to have influenced the submitted work., (Copyright © 2024, Ali et al.)
- Published
- 2024
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75. sendigR: an R package to leverage the value of CDISC SEND datasets for cross-study analysis.
- Author
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Snyder K, Ahmed CMS, Ali MY, Butler S, DeNieu M, Houser W, Paisley B, Rosentreter M, Wang W, and Larsen B
- Abstract
The CDISC Standard for Exchange of Nonclinical Data (SEND) data standard has created new opportunities for collaborative development of open-source software solutions to facilitate cross-study analyses of toxicology study data. A public-private partnership between BioCelerate and the FDA/Center for Drug Evaluation and Research (CDER) was established in part to develop and publicize novel methods to facilitate cross-study analysis of SEND datasets. As part of this work in collaboration with the Pharmaceutical Users Software Exchange (PHUSE), an R package sendigR has been developed to enable users to construct a relational database from a collection of SEND datasets and then query that database to perform cross-study analyses. The sendigR package also includes an integrated Python package, xptcleaner, which can be used to harmonize the terminology used in SEND datasets by mapping to CDISC controlled terminologies. The sendigR R package is freely available on the comprehensive R Archive Network (CRAN) and at https://github.com/phuse-org/sendigR. An R Shiny web application was included in the R package to enable toxicologists with no coding experience to perform historical control analyses. Experienced R programmers will be able to integrate the package functions into their own custom scripts/packages and potentially contribute improvements to the functionality of sendigR. sendigR reference manual: https://phuse-org.github.io/sendigR/. sendigR R Shiny demo app: https://phuse-org.shinyapps.io/sendigR/., Competing Interests: Authors WH and WW were employed by Bristol Myers Squibb. Author BP was employed by Eli Lilly & Co. Author MS was employed by Bayer AG. Author BL was employed by Novo Nordisk. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Snyder, Ahmed, Ali, Butler, DeNieu, Houser, Paisley, Rosentreter, Wang and Larsen.)
- Published
- 2024
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76. An empirical estimation of aggregate import demand under foreign exchange constraints: Evidence from Ethiopia.
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Ali MY, Yimer AM, and Dessie TS
- Subjects
- Ethiopia, Humans, Income, Models, Economic, Regression Analysis, Commerce
- Abstract
This study employs the estimation of aggregate import demand under foreign exchange constraints in Ethiopia, utilizing annual time series data from 1985 to 2021. The regression analysis is conducted using the nonlinear autoregressive distributed lag (NARDL) approach to investigate the impact of the accumulation of foreign exchange reserves on aggregate import demand in Ethiopia. The estimation results indicate that, in the long run, all the variables, i.e., foreign exchange reserve, the relative price of imports, real income, volatility of the exchange rate, money supply, and policy dummy, significantly determine the behavior of aggregate imports over the reference period. The findings also show that, in the long run, foreign exchange reserve, real income, and the exchange rate positively affect the demand for imports in Ethiopia. Meanwhile, a positive shock in relative import price and money supply negatively affects import demand in Ethiopia. Thus, the price and income elasticity estimates have correct signs and are statistically significant. The variables included in the model strongly affect import demand in both the short and long run. Finally, policymakers aiming to significantly influence import demand should focus on effective management of these variables, as they strongly affect import volume., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Ali et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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77. Comparative simulation of nonlinear radiative nano casson and maxwell fluids with periodic magnetic force and sensitivity analysis.
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Islam S, Ali MY, and Reza-E-Rabbi S
- Abstract
This study investigated cyclic magneto-hydrodynamic radiative effects in Casson and Maxwell fluids, including nonlinear radiation and Arrhenius activation energy. It promotes non-Newtonian fluid use in diverse fields like industry, manufacturing, sciences, medicine, and engineering. Using boundary layer approximations, non-dimensional equations are formulated. For numerical solutions, widely recognized explicit finite difference method (EFDM) has been utilized. To ensure the robustness of EFDM results, stability and convergence tests are performed. Exploration involve a detailed sensitivity analysis by using RSM, offering a thorough understanding of influential parameters. These analyses explore complex interactions among physical parameters, affecting Nusselt number, skin friction, and Sherwood number. Maxwell fluid's velocity is more affected by periodic magnetic force than Casson fluid, during the presence of nonlinear radiation. Additionally, nonlinear thermal radiation has a greater impact on temperature and concentration profiles compared to linear radiation for both fluids. Moreover, Casson fluid has a stronger influence on the average heat transfer rate compared to Maxwell fluid with nonlinear thermal radiation which is 8.6 % greater than the Maxwell fluid. On the other hand, at constant thermal radiation ( Ra ), due to decrease of Brownian motion ( Nb ), the rate of heat transfer is reduced by 1.2 % and 0.3 % respectively for Maxwell and Casson fluid. Also, for thermophoresis parameter ( Nt ), this rate is reduced by 2 % and 1.6 % respectively. The investigation also revealed that the Ra exhibits a positive sensitivity towards average Nusselt number, while Nb and Nt are displayed a negative sensitivity., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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78. Prunin from Poncirus trifoliata (L.) Rafin Inhibits Aldose Reductase and Glucose-Fructose-Mediated Protein Glycation and Oxidation of Human Serum Albumin.
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Ali MY, Zamponi GW, Abdul QA, Seong SH, Min BS, Jung HA, and Choi JS
- Subjects
- Rats, Humans, Animals, Glucose pharmacology, Maillard Reaction, Glycation End Products, Advanced metabolism, Serum Albumin, Human, Aldehyde Reductase metabolism, Fructose, Poncirus metabolism, Diabetes Complications, Lens, Crystalline, Phlorhizin analogs & derivatives
- Abstract
Diabetes complications are associated with aldose reductase (AR) and advanced glycation end products (AGEs). Using bioassay-guided isolation by column chromatography, 10 flavonoids and one coumarin were isolated from Poncirus trifoliata Rafin and tested in vitro for an inhibitory effect against human recombinant AR (HRAR) and rat lens AR (RLAR). Prunin, narirutin, and naringin inhibited RLAR (IC
50 0.48-2.84 μM) and HRAR (IC50 0.68-4.88 μM). Docking simulations predicted negative binding energies and interactions with the RLAR and HRAR binding pocket residues. Prunin (0.1 and 12.5 μM) prevented the formation of fluorescent AGEs and nonfluorescent Nε -(carboxymethyl) lysine (CML), as well as the fructose-glucose-mediated protein glycation and oxidation of human serum albumin (HSA). Prunin suppressed the formation of the β-cross-amyloid structure of HSA. These results indicate that prunin inhibits oxidation-dependent protein damage, AGE formation, and AR, which may help prevent diabetes complications.- Published
- 2024
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79. Chemical proteomics to study metabolism, a reductionist approach applied at the systems level.
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Ali MY and Bar-Peled L
- Subjects
- Humans, Proteomics, Genomics
- Abstract
Cellular metabolism encompasses a complex array of interconnected biochemical pathways that are required for cellular homeostasis. When dysregulated, metabolism underlies multiple human pathologies. At the heart of metabolic networks are enzymes that have been historically studied through a reductionist lens, and more recently, using high throughput approaches including genomics and proteomics. Merging these two divergent viewpoints are chemical proteomic technologies, including activity-based protein profiling, which combines chemical probes specific to distinct enzyme families or amino acid residues with proteomic analysis. This enables the study of metabolism at the network level with the precision of powerful biochemical approaches. Herein, we provide a primer on how chemical proteomic technologies custom-built for studying metabolism have unearthed fundamental principles in metabolic control. In parallel, these technologies have leap-frogged drug discovery through identification of novel targets and drug specificity. Collectively, chemical proteomics technologies appear to do the impossible: uniting systematic analysis with a reductionist approach., Competing Interests: Declaration of interests L.B.-P. is a founder, consultant and holds privately held equity in Scorpion Therapeutics., (Copyright © 2024. Published by Elsevier Ltd.)
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- 2024
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80. Natural Isatin Derivatives Against Black Fungus: In Silico Studies.
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Hossain MS, Rahman MA, Dey PR, Khandocar MP, Ali MY, Snigdha M, Coutinho HDM, and Islam MT
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- Humans, Molecular Docking Simulation, Antifungal Agents, Fungi, Isatin, Coronavirus Infections
- Abstract
During this coronavirus pandemic, when a lot of people are already severely afflicted with SARS-CoV-19, the dispersion of black fungus is making it worse, especially in the Indian subcontinent. Considering this situation, the idea for an in silico study to identify the potential inhibitor against black fungal infection is envisioned and computational analysis has been conducted with isatin derivatives that exhibit considerable antifungal activity. Through this in silico study, several pharmacokinetics properties like absorption, distribution, metabolism, excretion, and toxicity (ADMET) are estimated for various derivatives. Lipinski rules have been used to observe the drug likeliness property, and to study the electronic properties of the molecules, quantum mechanism was analyzed using the density functional theory (DFT). After applying molecular docking of the isatin derivatives with sterol 14-alpha demethylase enzyme of black fungus, a far higher docking affinity score has been observed for the isatin sulfonamide-34 (derivative 1) than the standard fluconazole. Lastly, molecular dynamic (MD) simulation has been performed for 100 ns to examine the stability of the proposed drug complex by estimating Root Mean Square Deviation (RMSD), Radius of gyration (Rg), Solvent accessible surface area (SASA), Root Mean Square Fluctuation (RMSF), as well as hydrogen bond. Listed ligands have precisely satisfied every pharmacokinetics requirement for a qualified drug candidate and they are non-toxic, non-carcinogenic, and have high stability. This natural molecule known as isatin derivative 1 has shown the potential of being a drug for fungal treatment. However, the impact of the chemicals on living cells requires more investigation and research., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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81. Acute back pain: The role of medication, physical medicine and rehabilitation: WFNS spine committee recommendations.
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Sharif S, Jazaib Ali MY, Kirazlı Y, Vlok I, Zygourakis C, and Zileli M
- Abstract
Objectives: To formulate the most current, evidence-based recommendations for the role of medication, physical medicine, and rehabilitation in the management of acute low back pain lasting <4 weeks., Methods: A systematic literature search in PubMed and Google Scholar databases was performed from 2012 to 2022 using the search terms "acute low back pain," "drugs," "bed rest," "physical medicine," rehabilitation." Standardized screening criteria resulted in a total of 39 articles that were analyzed, including 16 RCTs, 8 prospective studies, 6 retrospective studies, and 9 systematic reviews. This up-to-date information was reviewed and presented at two separate meetings of the World Federation of Neurosurgical Societies (WFNS) Spine Committee. Two rounds of the Delphi method were utilized to vote on the statements and arrive at a positive or negative consensus., Results and Conclusion: The WFNS Spine Committee finalized twelve recommendation guidelines on the role of medication, physical medicine and rehabilitation in the management of acute LBP. We advocate for a uniform approach to the treatment of these patients, including proper patient education and utilizing drugs with proven efficacy and minimal side effects. First-line pharmacologic agents are acetaminophen and NSAIDs; muscle relaxants can be used for spasms and pain reduction, and opioids should be minimized. Continued activity, rather than bed rest, is recommended, and lumbar spine orthotics may be used to reduce pain and augment functional status. Thermotherapy, cryotherapy, TENs, spinal manipulative therapy, and acupuncture may all be used as adjuncts to improve acute LBP., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 Published by Elsevier Inc.)
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- 2024
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82. Takayasu's Arteritis: An Uncommon Cause of Hemorrhagic Stroke in Young Individuals.
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Syed ER, Salih N, Ullah H, Wahab A, Ali MY, Ayub M, and Ghani N
- Abstract
The aorta is particularly damaged by Takayasu's arteritis (TA), a rare form of vasculitis. Chest discomfort, exhaustion, fever, elevated blood pressure, heart failure, and stroke can all result from this. Major intimal fibrosis with vascular constriction is the disease's hallmark; although anybody can have it, Asian females in their 20s or 30s seem to be most typically affected. The treatment of a 23-year-old Asian female with Takayasu's arteritis (TA) is discussed in this case study, along with her presentation. Before developing seizures, the patient first showed signs of left-sided weakness and facial droop. Ischemic infarcts and vasculopathy were detected by imaging. The patient fulfilled several American College of Rheumatology (ACR) criteria for TA with a positive erythrocyte sedimentation rate (ESR). During treatment, high-dose prednisolone, cyclophosphamide, and neuroprotective measures were used. The patient's attentiveness and mobility improved despite early complications, such as vascular friability. This case illustrates the difficulties and effective treatment of neurovascular problems connected to TA., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Syed et al.)
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- 2024
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83. Numerical modeling of a MHD non-linear radiative Maxwell nano fluid with activation energy.
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Ahmed F, Reza-E-Rabbi S, Ali MY, Ali LE, Islam A, Rahman MA, Roy R, Islam MR, and Ahmmed SF
- Abstract
The present research explores linear as well as nonlinear radiation patterns based on the MHD non-Newtonian (Maxwell) nanofluid flow having Arrhenius activation energy. This study's core focus is MHD properties in non-Newtonian fluid dynamics and boundary layer phenomena analysis. It initiates with time-dependent equations, employing boundary layer approximations. Extensive numerical computations, executed with custom Compact Visual Fortran code and the EFD method, provide profound insights into non-Newtonian fluid behavior, revealing intricate force interactions and fluid patterns. To check the stability of the solution, a convergence and stability analysis is performed. With the values of Δ Y = 0.25, Δ τ = 0.0005, and Δ X = 0.20; it is found that the model convergence occurs to the Lewis number, Le > 0.016 as well as the Prandtl number, Pr > 0.08. In this context, investigating non-dimensional results that depend on multiple physical factors. Explanation and visual representations of the effects of different physical characteristics and their resultant temperatures, concentrations, and velocity profiles are provided. As a result of the illustrations, the skin friction coefficient and Sherwood number, which are calculated, as well as Nusselt values, have all come up in discussion. Additionally, detailed representations of isothermal lines and streamlines are implemented, and it is pointed out that the development of these features occurs at the same time as Brownian motion. Furthermore, the temperature field for Maxwell fluid is modified due to the impression of chemical reaction as well as the Dufour number ( Kr and Du ). Our research demonstrates the superior performance of non-Newtonian solutions, notably in cases involving activation energy and nonlinear radiation. This paradigm shift carries significant implications. In another context, the interplay between Maxwell fluid and nonlinear radiation is notably affected by activation energy, offering promising applications in fields like medicine and industry, particularly in groundbreaking cancer treatment approaches., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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84. Green synthesized gold nanoparticles and CuO-based nonenzymatic sensor for saliva glucose monitoring.
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Ali MY, Abdulrahman HB, Ting WT, and Howlader MMR
- Abstract
Glucose, essential for brain and muscle functions, requires careful monitoring in diabetes and other chronic disease management. While blood glucose monitoring provides precise information about these diseases, it remains an invasive method. Saliva glucose monitoring could offer an alternative approach, but the glucose concentration in saliva is very low. In this work, we report a simple, low-cost, highly sensitive nonenzymatic electrochemical glucose sensor. We developed this sensor using green synthesized gold nanoparticles (AuNPs) and wet chemical synthesized copper oxide (CuO) nanoparticles on a screen-printed carbon electrode (Au/CuO/SPCE). The sensor's high sensitivity results from dual amplification strategies using AuNPs and CuO nanomaterials, each demonstrating catalytic activity towards glucose. This shows promising potential for saliva glucose monitoring. The AuNPs were synthesized using an Au precursor and orange peel extract (OPE), yielding stable colloidal AuNPs with a mean diameter of about 37 nm, thus eliminating the need for additional capping agents. Under optimal conditions, amperometric tests revealed that the sensor responded linearly to glucose concentrations ranging from 2 μM to 397 μM with a sensitivity of 236.70 μA mM
-1 cm-2 . Furthermore, the sensor demonstrated excellent reproducibility, stability and high selectivity for glucose in the presence of different biomolecules. We validated the sensor's efficacy by measuring glucose in human saliva, showing its potential for noninvasive glucose monitoring. This research advances the development of point-of-care devices, positioning the sensor as a promising tool for noninvasive glucose monitoring and improved diabetes management., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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85. Interleukin-8 genetic polymorphism and its relation to Helicobacter pylori infection and Helicobacter pylori-associated gastric diseases.
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Amin IA, Hassan MA, Elgendy SG, Abdelmohsen AS, Ali MY, and Abdel-Raady BA
- Subjects
- Humans, Genotype, Helicobacter pylori, Polymorphism, Genetic, Polymorphism, Restriction Fragment Length, Helicobacter Infections complications, Helicobacter Infections genetics, Interleukin-8 genetics
- Abstract
Helicobacter pylori (H. pylori) infection has a variety of clinical outcomes, and host genetic factors play an important role in this process. Cytokines are important factors in mediating and controlling the inflammatory process during H. pylori infection. Interleukin-8 (IL-8) plays a critical role in the epithelial cell response to H. pylori infection and the development of H. pylori-related gastric disorders. The IL-8 gene has an A/T base pair polymorphism in the promoter region (-251), which has been linked to an increase in interleukin production by gastric epithelial cells. In this context, the goal of our study was to determine the polymorphism in the IL-8 gene and its relation to H. pylori infection and H. pylori-associated gastric diseases. Gastric biopsy specimens were collected from 44 patients with H. pylori infection and 29 patients without H. pylori infection. The rapid urease test and detection of the glmM gene were used to diagnose H. pylori infection. Polymerase chain reaction-restriction fragment length polymorphism was used to identify the polymorphism in the Il-8 gene (at position-251). The presence of the A/A and T/A genotypes of the IL-8 gene was found to be significantly associated with susceptibility to H. pylori infection (p = 0.012 and p = 0.004, respectively). Also, the IL-8 A allele was significantly associated with H. pylori infection in our study (p = 0.002). We did not find a significant association between IL-8 gene polymorphism and a higher risk of gastritis and peptic ulcer disease. In conclusion, IL-8 gene polymorphism at -251 position was significantly associated with H. pylori infection., (Copyright© by the Egyptian Association of Immunologists.)
- Published
- 2024
86. Immediate health risk: Concentration of heavy metals in contaminated freshwater fishes from the river channel of Turag-Tongi-Balu.
- Author
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Hossain MM, Jahan I, Al Nahian A, Zhuang Z, Maxwell SJ, Ali MY, Sethupathy S, and Zhu D
- Subjects
- Animals, Humans, Rivers chemistry, Cadmium, Ecosystem, Lead, Environmental Monitoring methods, Bangladesh, Fishes, Fresh Water, Risk Assessment, Metals, Heavy, Neoplasms, Water Pollutants, Chemical
- Abstract
The consumption of contaminated finfish from the polluted river channel of Turag-Tongi-Balu, Kamarpara site, Dhaka poses significant health hazards to humans. We used mass spectrometry on chemically digested liquid samples from five fish species from Turag-Tongi-Balu to estimate the concentrations of 10 elements (Cr, Mn, Ni, Cu, Zn, As, Se, Cd, Fe, and Pb). Except M. vittatus, the mean concentrations of Cd, Mn, Pb, and Se exceeded the Food Safety Guideline (FSG) value in all fish species. Among the species studied, L. rohita, C. punctata, C. batrachus, H. fossilis, and M. vittatus exhibited higher Mn concentrations surpassing the FSG threshold, thus elevating the non-carcinogenic risk across all species. There were statistically significant differences (p < .05) in the mean concentrations of heavy metals among fish species. The Target Hazard Quotient (THQ) value of Mn poses a significant non-carcinogenic risk to human health, while the hazard of other metals is negligible. Except for M. vittus, the Hazard Index value (HI ≥ 1) revealed the risk that all metals exceed the limit and pose a threat to human health. Cd, As, and Ni metals pose a significant carcinogenic risk to human health from the consumption of fish samples, which is a particularly alarming target cancer risk (TCR). In conclusion, regular dietary consumption of fish from this polluted ecosystem of the Turag-Tongi-Balu River channel's Kamarpara site poses a significant health risk and is indicated as cancer. This study emphasizes the significance of monitoring heavy metal contamination in finfish and minimizing the risk to human health with effective measures., (© 2023 Wiley Periodicals LLC.)
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- 2024
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87. Evaluation of a dye-decolorizing peroxidase from Comamonas serinivorans for lignin valorization potentials.
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Sethupathy S, Xie R, Liang N, Shafreen RMB, Ali MY, Zhuang Z, Zhe L, Zahoor, Yong YC, and Zhu D
- Subjects
- Molecular Docking Simulation, Oxidation-Reduction, Peroxidases metabolism, Coloring Agents chemistry, Peroxidase metabolism, Lignin chemistry
- Abstract
Although dye-decolourising peroxidases (DyPs) are well-known for lignin degradation, a comprehensive understanding of their mechanism remains unclear. Therefore, studying the mechanism of lignin degradation by DyPs is necessary for industrial applications and enzyme engineering. In this study, a dye-decolourising peroxidase (CsDyP) gene from C. serinivorans was heterologously expressed and studied for its lignin degradation potential. Molecular docking analysis predicted the binding of 2, 2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), veratryl alcohol (VA), 2, 6-dimethylphenol (2, 6- DMP), guaiacol (GUA), and lignin to the substrate-binding pocket of CsDyP. Evaluation of the enzymatic properties showed that CsDyP requires pH 4.0 and 30 °C for optimal activity and has a high affinity for ABTS. In addition, CsDyP is stable over a wide range of temperatures and pH and can tolerate 5.0 mM organic solvents. Low NaCl concentrations promoted CsDyP activity. Further, CsDyP significantly reduced the chemical oxygen demand decolourised alkali lignin (AL) and milled wood lignin (MWL). CsDyP targets the β-O-4, CO, and CC bonds linking lignin's G, S, and H units to depolymerize and produce aromatic compounds. Overall, this study delivers valuable insights into the lignin degradation mechanism of CsDyP, which can benefit its industrial applications and lignin valorization., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
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88. Ectoine Globally Hypomethylates DNA in Skin Cells and Suppresses Cancer Proliferation.
- Author
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Qaria MA, Xu C, Hu R, Alsubki RA, Ali MY, Sivasamy S, Attia KA, and Zhu D
- Subjects
- Animals, Mice, Mice, Nude, DNA metabolism, Cell Proliferation, DNA (Cytosine-5-)-Methyltransferases genetics, DNA (Cytosine-5-)-Methyltransferases metabolism, DNA Methylation, Neoplasms drug therapy, Neoplasms genetics
- Abstract
Epigenetic modifications, mainly aberrant DNA methylation, have been shown to silence the expression of genes involved in epigenetic diseases, including cancer suppression genes. Almost all conventional cancer therapeutic agents, such as the DNA hypomethylation drug 5-aza-2-deoxycytidine, have insurmountable side effects. To investigate the role of the well-known DNA protectant (ectoine) in skin cell DNA methylation and cancer cell proliferation, comprehensive methylome sequence analysis, 5-methyl cytosine (5mC) analysis, proliferation and tumorigenicity assays, and DNA epigenetic modifications-related gene analysis were performed. The results showed that extended ectoine treatment globally hypomethylated DNA in skin cells, especially in the CpG island (CGIs) element, and 5mC percentage was significantly reduced. Moreover, ectoine mildly inhibited skin cell proliferation and did not induce tumorigenicity in HaCaT cells injected into athymic nude mice. HaCaT cells treated with ectoine for 24 weeks modulated the mRNA expression levels of Dnmt1 , Dnmt3a , Dnmt3b , Dnmt3l , Hdac1 , Hdac2 , Kdm3a , Mettl3 , Mettl14 , Snrpn , and Mest . Overall, ectoine mildly demethylates DNA in skin cells, modulates the expression of epigenetic modification-related genes, and reduces cell proliferation. This evidence suggests that ectoine is a potential anti-aging agent that prevents DNA hypermethylation and subsequently activates cancer-suppressing genes.
- Published
- 2023
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89. Fabrications, Classifications, and Environmental Impact of PCM-Incorporated Textiles: Current State and Future Outlook.
- Author
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Hossain MT, Shahid MA, Ali MY, Saha S, Jamal MSI, and Habib A
- Abstract
Phase change materials (PCMs) are an extraordinary family of compounds that can store and release thermal energy during phase changes. In recent years, the incorporation of PCMs into textiles has attracted considerable interest, since it represents a unique way to improve the comfort and usefulness of textiles. This article examines the advancements achieved in the preparation, classifications, and environmental effects of PCM-integrated textiles, along with a roadmap for the future. Progress of different PCM has been reported including its pros and cons. In addition, fabrications of the PCM on the apparel have been highlighted. Moreover, this Review analyzed the positive environmental impact of PCM-integrated textiles including improved insulation, extended product lifespan, and energy savings along with negative effects like higher energy consumption in the manufacturing process, added chemical additives tending to have a negative impact on the environment, less disposal features textiles and many more with recent references. Moreover, the future outlook also reports more research on nanoencapsulation, making it energy efficient, ensuring affordability, and more applications in smart PCM textiles. It seeks to stimulate additional research, encourage innovation, and contribute to the creation of high-performance, energy-efficient textiles by investigating the possibilities of PCM-enhanced textiles. The future of PCM in textiles is hopeful, with continuous research and technological advances resolving the aforementioned difficulties., Competing Interests: The authors declare no competing financial interest., (© 2023 The Authors. Published by American Chemical Society.)
- Published
- 2023
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90. Morphometric features, seminal profile and diluters effect on post-thaw semen quality of Munshiganj cattle in Bangladesh.
- Author
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Das D, Mahbubul M, Ali MY, Kobir MS, Kabir MA, Hossain SMJ, and Apu AS
- Abstract
The study investigates morphometric features, seminal profile and post-thaw semen quality of Munshiganj cattle. Morphometric features were measured using measuring tape from 20 Munshiganj cattle while coat color was measured by observing in naked eye. Fresh and post thaw semen quality parameters were analyzed using Computer Assisted semen analyzer (CASA). Coat color of Munshiganj male cattle were creamy white to dull pinkish and female were white to creamy. The mean body weight, body length, hearth girth, height at wither, head length, head width, ear length, ear width, fore leg length, hind leg length, tail length, tail doc circumference, horn length, horn diameter and mouth circumference were 362.80 kg, 137.31 cm, 160.66 cm, 135.21 cm, 50.97 cm, 20.58 cm, 19.75 cm, 9.88 cm, 73.02 cm, 74.84 cm, 106.10 cm, 20.75 cm, 13.60 cm, 16.12 cm and 43.00 cm, respectively. There was significant difference (p < 0.05) between male and female in terms of body weight (418.00 vs 307.60 kg), heart girth (173.74 vs 147.57 cm), head width (22.50 vs 18.67 cm), horn diameter (18.58 vs 13.66 cm) and mouth circumference (46.60 vs 39.40 cm). Average scrotal length was 16.76 cm while scrotal circumference was 32.70 cm. Age had significant effect (p < 0.05) on morphometric characteristics of Munshiganj male and female cattle. On the other hand, season had no significant effect on semen quality. Mean semen volume, sperm concentration, total motile, progressive, static, slow and live spermatozoa were 5.83 ± 0.88 ml, 1510.27 ± 844.07 million/ml, 91.9 ± 2.17 %, 63.80 ± 12.53 %, 8.10 ± 2.17 %, 0.10 ± 0.10 %, 91.38 ± 0.25 %, respectively. On the other hand, sperm head length and width, sperm tail length of Munshiganj cattle were 10.39 ± 0.16 μm, 4.26 ± 0.07 μm, 21.5 ± 0.52 μm, respectively. Individual breeding bull had a significant (p < 0.05) effect on post-thawed motile sperm percentage. Four different diluters (Triladyl, Steridyl, Tris-egg yolk-Citrate and Andromed) were used to compare the effects of diluter on post-thaw semen quality of Munshiganj cattle and found that diluter had no significant effect (p > 0.05) on post thaw semen quality except slow motility and proximal droplet percentages. Munshiganj cattle had a distinctive phenotypic feature with standard quality semen and had no effect of egg yolk free and egg yolk based diluters on post thaw semen quality., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 Published by Elsevier Ltd.)
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- 2023
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91. What is Polypharmacy in Patients with Chronic Kidney Disease? A Systematic Review.
- Author
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Al-Khulaifi A, Khatib M, Ali E, Ali MY, and Danjuma MI
- Subjects
- Humans, Databases, Factual, Polypharmacy, Renal Insufficiency, Chronic drug therapy
- Abstract
Purpose: Polypharmacy presents an increasing therapeutic challenge for physicians managing patients with chronic kidney disease (CKD). However, there is a lack of consensus regarding the specific medication count threshold that defines polypharmacy in this population. The objective of this review is to establish a unified definition of polypharmacy in the CKD population by examining the diverse definitions used in previously published studies., Methods: A comprehensive search was conducted in relevant databases (PubMed, SCOPUS, Cochrane, and disease-specific databases) from 2000 to May 2022 to identify studies with polypharmacy threshold definitions in patients with CKD. Studies meeting the inclusion criteria were included in this review, and their methodologic quality was assessed., Findings: Following the screening of the search results, duplicate records and studies that did not meet the inclusion criteria were removed, resulting in a total of 18 studies included in this review. Among these, 61.1% specified the polypharmacy definition to be a threshold of ≥5 medications. In addition, 22.2% specified a high polypharmacy definition at a threshold of ≥10 medications. However, none of the studies reported on the dichotomy between kidney-related and non-kidney-related polypharmacy., Implications: This review indicates that a numerical threshold of ≥5 medications is commonly used to define polypharmacy in patients with CKD. Nevertheless, it remains uncertain whether a kidney-related polypharmacy definition or a high polypharmacy definition would better identify patients with CKD at risk for polypharmacy-related complications., Competing Interests: Declaration of Competing Interest None., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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92. Pharmacological and toxicological evaluation of methyl 4-hydroxy-2H-1,2-benzothiazine-3-carboxylate 1,1-dioxoide against haloperidol induced Parkinson like symptoms in animal model: In-vitro and in-vivo studies.
- Author
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Hussain L, Masood I, Ahmad M, Ali MY, Saleem U, Hussain M, Khalid SH, and Chauhdary Z
- Subjects
- Mice, Animals, Haloperidol toxicity, Haloperidol therapeutic use, Dopamine metabolism, Brain metabolism, Parkinson Disease drug therapy, Parkinson Disease metabolism
- Abstract
In Parkinson's disease (PD), degradation of dopaminergic neurons in substantia nigra causes striatal deficiency of dopamine, which results in tremors, bradykinesia with instability in posture, rigidity and shuffled gait. Prevalence of PD increases with age as from 65 to 85 years. In an attempt to devise targeted safe therapy, nanoparticles of methyl 4-hydroxy-2H-1,2-benzothiazine-3-carboxylate 1,1-dioxide (MBD) (MBDN), were prepared and their acute toxicity and safety was evaluated. Thirty-six healthy albino mice were randomly divided into six groups (n = 6): normal control, diseased control, standard (levodopa/carbidopa (100/25 mg/kg) and the remaining three groups were administered 1.25, 2.5 and 5 mg/kg MBDN during 21 days study. Except control, all mice, were injected haloperidol (1 mg/ kg i.p.) 1-h prior to treatment to induce PD. Acute toxicity test showed, no effect of MBDN on lipid profile, brain, renal and liver function and histoarchitecture of kidney, liver and heart, except decreased (p < 0.05) platelet count. Behavioral studies showed significant improvement (p < 0.001) in motor function and reduction of oxidation status in a MBDN in a dose dependent manner. Thus, the study findings revealed significance of MBDN as a selective MAO-B inhibitor for the improvement of Parkinson's symptoms in animal model., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Inc.)
- Published
- 2023
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93. Crustal structure and seismic anisotropy of rift basins in Somaliland.
- Author
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Ali MY, Ismaiel M, Yusuf IM, and Kaviani A
- Abstract
Rift margins provide insights into the processes governing the rupture of the continental lithosphere and the subsequence formation of sedimentary basins. The Proterozoic basement underlying Somaliland has been affected by multiple rifting; however, the crustal structure of these rifted basins remains unknown. This study utilized teleseismic receiver function analysis, Bayesian inversion, common conversion point imaging and 2D forward gravity modelling to examine the crust and upper mantle of Somaliland. The results indicate 36.8-38.2 km of crust in southern Somaliland, while the central and northern regions feature thinned crust (~ 21 km) with 5-6 km thick sediments. The joint analysis of radial and transverse components of receiver functions and shear wave splitting revealed fast axis directions trending to 50-56° in the upper mantle, indicating that azimuthal anisotropy is oriented in the regional Africa-Arabia plate motion. Such orientation may have resulted from lattice preferred orientation of olivine from the asthenospheric flow. Additionally, the fast polarization of the crust in central Somaliland is oriented at - 15°, indicating fossil deformation in the thinned crust related to the NW-SE trending Late Jurassic rift event. Further, the fast polarization for stations near the Gulf of Aden is oriented at 75-80°, suggesting crustal deformation associated with the Oligocene rift event. The crustal anisotropy at southern Somaliland revealed fast polarization oriented at - 85°, indicating a preserved far-field response of the WNW-ESE trending Late Cretaceous rift event. Overall, the study provides for the first-time insight into the rift-related extensional strain fabric in the crust and upper mantle anisotropy induced by asthenospheric flow in Somaliland., (© 2023. Springer Nature Limited.)
- Published
- 2023
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94. Utilization of glycosyltransferases as a seamless tool for synthesis and modification of the oligosaccharides-A review.
- Author
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Ali MY, Liaqat F, Khazi MI, Sethupathy S, and Zhu D
- Subjects
- Sugars, Monosaccharides, Oligosaccharides, Nucleotides, Glycosyltransferases chemistry, Carbohydrates
- Abstract
Glycosyltransferases (GTs) catalyze the transfer of active monosaccharide donors to carbohydrates to create a wide range of oligosaccharide structures. GTs display strong regioselectivity and stereoselectivity in producing glycosidic bonds, making them extremely valuable in the in vitro synthesis of oligosaccharides. The synthesis of oligosaccharides by GTs often gives high yields; however, the enzyme activity may experience product inhibition. Additionally, the higher cost of nucleotide sugars limits the usage of GTs for oligosaccharide synthesis. In this review, we comprehensively discussed the structure and mechanism of GTs based on recent literature and the CAZY website data. To provide innovative ideas for the functional studies of GTs, we summarized several remarkable characteristics of GTs, including folding, substrate specificity, regioselectivity, donor sugar nucleotides, catalytic reversibility, and differences between GTs and GHs. In particular, we highlighted the recent advancements in multi-enzyme cascade reactions and co-immobilization of GTs, focusing on overcoming problems with product inhibition and cost issues. Finally, we presented various types of GT that have been successfully used for oligosaccharide synthesis. We concluded that there is still an opportunity for improvement in enzymatically produced oligosaccharide yield, and future research should focus on improving the yield and reducing the production cost., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
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95. Selectivity of Sol-Gel and Hydrothermal TiO 2 Nanoparticles towards Photocatalytic Degradation of Cationic and Anionic Dyes.
- Author
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Islam MT, Roni MNP, Ali MY, Islam MR, Hossan MS, Rahman MH, Zahid AASM, Alam MNE, Hanif MA, and Akhtar MS
- Abstract
Titanium dioxide (TiO
2 ) nanoparticles have been extensively studied for catalyzing the photo-degradation of organic pollutants, the photocatalyst being nonselective to the substrate. We, however, found that TiO2 nanoparticles prepared via the sol-gel and hydrothermal synthetic routes each possess a definite specificity to the charge of the substrate for photodegradation. The nanoparticles were characterized by SEM, FTIR, XRD, TGA, and UV-visible spectra, and the photocatalytic degradation under UV-B (285 nm) irradiation of two model compounds, anionic methyl Orange (MO) and cationic methylene blue (MB) was monitored by a UV-visible spectrophotometer. Untreated sol-gel TiO2 nanoparticles (Tsg ) preferentially degraded MO over MB (90% versus 40% in two hours), while after calcination at 400 °C for two hours (Tsgc ) they showed reversed specificity (50% MO versus 90% MB in one hour). The as-prepared hydrothermal TiO2 nanoparticles (Tht ) behaved in the opposite sense of Tsg (41% MO versus 91% MB degraded in one and a half hours); calcination at 400 °C (Thtc ) did not reverse the trend but enhanced the efficiency of degradation. The study indicates that TiO2 nanoparticles can be made to degrade a specific class of organic pollutants from an effluent facilitating the recycling of a specific class of pollutants for cost-effective effluent management.- Published
- 2023
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- View/download PDF
96. A Structural Model for the Core Nup358-BicD2 Interface.
- Author
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Gibson JM, Zhao X, Ali MY, Solmaz SR, and Wang C
- Subjects
- Microtubules metabolism, Biological Transport, Models, Structural, Dyneins metabolism, Microtubule-Associated Proteins metabolism
- Abstract
Dynein motors facilitate the majority of minus-end-directed transport events on microtubules. The dynein adaptor Bicaudal D2 (BicD2) recruits the dynein machinery to several cellular cargo for transport, including Nup358, which facilitates a nuclear positioning pathway that is essential for the differentiation of distinct brain progenitor cells. Previously, we showed that Nup358 forms a "cargo recognition α-helix" upon binding to BicD2; however, the specifics of the BicD2-Nup358 interface are still not well understood. Here, we used AlphaFold2, complemented by two additional docking programs (HADDOCK and ClusPro) as well as mutagenesis, to show that the Nup358 cargo-recognition α-helix binds to BicD2 between residues 747 and 774 in an anti-parallel manner, forming a helical bundle. We identified two intermolecular salt bridges that are important to stabilize the interface. In addition, we uncovered a secondary interface mediated by an intrinsically disordered region of Nup358 that is directly N-terminal to the cargo-recognition α-helix and binds to BicD2 between residues 774 and 800. This is the same BicD2 domain that binds to the competing cargo adapter Rab6, which is important for the transport of Golgi-derived and secretory vesicles. Our results establish a structural basis for cargo recognition and selection by the dynein adapter BicD2, which facilitates transport pathways that are important for brain development.
- Published
- 2023
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- View/download PDF
97. Estimating peak breeding season, size at first maturity and variation in fecundity and egg-size at different sizes of Hilsa ( Tenualosa ilisha ).
- Author
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Abu Rayhan MS, Rahman MS, Bose PK, Sarower MG, and Ali MY
- Abstract
Hilsa shad, Tenualosa ilisha , has recently gained momentum due to its taste, nutrition and demand. Imposing ban at peak breeding and setting up a minimum capture size are two of the most effective tools for conservation and management of any fish species. Although, Bangladesh government has been imposing ban on a particular time and set the minimum legal size, there is still contradictory information on these two issues. That is why, a study was carried out to determine peak season of breeding and first maturity of Hilsa collected across the natural habitats in Bangladesh. Variation in fecundity and egg-size at different sizes were also investigated. Peak breeding season was identified observing gonadosomatic index of female Hilsa all the year round. First maturity was estimated with Probit analysis. Based on the gonadosomatic index of gravid females, peak breeding season was identified as late October to early November in this study. However, another minor peak was found in February-March. The highest GSI value (12.1) was observed in October-November, which indicates the peak time of spawning. The size at maturity (M
50 ) of female Hilsa was estimated as 31 cm total length. A significant variation was observed in egg sizes between the left and right lobes of the fish (t(24) = 2.42, p = 0.02), and between the parts of the same lobe (p = 0.03). However, fish length and weight had no effect on egg size(for egg-size vs. fish length, r = -0.009, p = 0.966; and for egg size vs. body weight, r = 0.132 and p = 0.530). The average egg count from left lobe and right lobe were recorded as 0.375 ± 0.16 million, 0.371 ± 0.17 million. Total fecundity was counted as 0.745 ± 0.33 million. A significant positive correlation was noticed between length, weight, and total fecundity (r = 0.7 for total fecundity vs. body weight; r = 0.6 for of total fecundity vs. length). No significant variation was observed in fecundity between the left and right lobe (p = 0.6) and among three parts of a lobe (p = 0.3). The size of eggs varied between two lobes and among different parts of a lobe. The eggs from middle part were bigger in size than the other parts. The findings of our study will help conserve and manage the natural population of Hilsa ( T. ilisha ) in Bangladesh and contribute to the wider scientific community., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)- Published
- 2023
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98. Case of lumbar spinal stenosis and chronic tophaceous gout.
- Author
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Jazaib Ali MY and Hussain M
- Abstract
Background: Rarely, chronic tophaceous gout can result in lumbar spinal stenosis and neural compression., Case Description: A 67-year-old male presented with the radiographic and magnetic resonance findings of gout involving and causing compression of the lumbar spine that responded to surgical decompression., Conclusion: It is difficult to diagnose lumbar spinal stenosis secondary to tophaceous gout. Notably, the treatment, based on the clinical presentation, may include both medication and surgical decompression., Competing Interests: There are no conflicts of interest., (Copyright: © 2023 Surgical Neurology International.)
- Published
- 2023
- Full Text
- View/download PDF
99. Discovery of Potent Angiotensin-Converting Enzyme Inhibitors in Pomegranate as a Treatment for Hypertension.
- Author
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Ali MY, Jannat S, and Chang MS
- Subjects
- Angiotensin-Converting Enzyme Inhibitors chemistry, Molecular Docking Simulation, Peptidyl-Dipeptidase A metabolism, Antioxidants chemistry, Pomegranate, Hypertension drug therapy, Hypertension metabolism
- Abstract
Pomegranate ( Punica granatum L.) is associated with numerous health benefits due to its high levels of antioxidant polyphenolic substances. Since pomegranate extract has been shown to inhibit angiotensin-converting enzyme (ACE), the potential inhibitory effect of most of its main constituents against ACE is unknown. Therefore, we tested the activities of 24 major compounds, the majority of which significantly inhibited ACE. Notably, pedunculagin, punicalin, and gallagic acid were the most effective ACE inhibitors with IC
50 values of 0.91, 1.12, and 1.77 μM, respectively. As demonstrated in molecular docking studies, compounds block ACE by forming multiple hydrogen bonds and hydrophobic interactions with catalytic residues and zinc ions in ACE's C- and N-domains, consequently inhibiting ACE's catalytic activity. Also, the most active pedunculagin stimulated nitric oxide (NO) production, activated the endothelial nitric oxide synthase enzyme (eNOS), and significantly increased eNOS protein expression levels up to 5.3-fold in EA.hy926 cells. Furthermore, pedunculagin increased in cellular calcium (Ca2+ ) concentration promoted eNOS enzyme activation and reduced the production of reactive oxygen species (ROS). In addition, the active compounds improved glucose uptake in insulin-resistant C2C12 skeletal muscle cells in a dose-dependent manner. The results of these computational, in vitro , and cellular experiments provide further evidence to the traditional medicine that involves using pomegranates to treat cardiovascular diseases like hypertension.- Published
- 2023
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100. Antioxidant and Anticancer Assessment and Phytochemical Investigation of Three Varieties of Date Fruits.
- Author
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Abdelbaky AS, Tammam MA, Ali MY, Sharaky M, Selim K, Semida WM, Abd El-Mageed TA, Ramadan MF, Oraby HF, and Diab YM
- Abstract
Date palm ( Phoenix dactylifera L.) fruits contain high concentrations of phenolic compounds, particularly flavonoids and other micronutrients, which impact human health due to their potent antioxidant, anti-inflammatory, and anticancer characteristics. In the present study, the effect of ethyl acetate, hydroethanol, hydromethanol, and aqueous extract from three date palm varieties (i.e., Ajwa, Siwi, and Sukkari) on phytochemical profiles and antioxidant and anticancer activities was investigated. Fruit extracts were screened for their antioxidant activity using the DPPH· method. Phenolic constituents were quantified and identified using HPLC-DAD. Extracts (ethyl acetate, hydroethanol, and hydromethanol) were assessed for cytotoxicity on nine human cancer cell lines, i.e., MG-63, HCT116, MCF7, MDA-MB-231, HEPG2, HUH7, A549, H460, and HFB4, using the sulphorhodamine-B (SRB) assay. Results showed that the ethyl acetate extract of the Sukkari fruits has the greatest antioxidant potential with an IC
50 value of 132.4 ± 0.3 μg·mL-1 , while the aqueous extract of Ajwa date fruits exhibited the lowest antioxidant effect with an IC50 value of 867.1 ± 0.3 μg·mL-1 . The extracts exhibited potent to moderate anticancer activities against the investigated cancer cell line in a source-dependent manner. Methanol extract of Siwi fruits exhibited the most potent anticancer activity (IC50 = 99 ± 1.6 µg·mL-1 ), followed by the same extract of Sukkari fruits with an IC50 value of 119 ± 3.5 µg·mL-1 against the cell line of human breast cancer (MDA-MB-231). Additionally, principal component analysis (PCA) was investigated to determine the relationship among the investigated traits and treatments. Our findings reveal that date palm fruit-derived extracts are excellent sources of biologically active constituents and substantiate their potential use in new anticancer strategies from natural resources.- Published
- 2023
- Full Text
- View/download PDF
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