670 results on '"Agata, K."'
Search Results
52. Mapping post-socialist changes in urban tissues: a comparative study of Belgrade and Krakow
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Kantarek, Anna Agata K, primary, Kwiatkowski, Krzysztof, additional, Korbel, Wojciech, additional, Djokić, Vladan, additional, Djordjević, Aleksandra, additional, Niković, Ana, additional, and Samuels, Ivor, additional
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- 2021
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53. Infant feeding knowledge and practices among parents of infants aged 4–12 months in Poland: an online cross-sectional survey study.
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Horvath, Andrea, Stróżyk, Agata K., Szajewska, Hanna, and Dziechciarz, Piotr
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BABY foods , *PARENT-infant relationships , *INFANTS , *CROSS-sectional method , *INTERNET surveys , *FRUIT juices - Abstract
Introduction: A better understanding of current infant feeding practices and factors influencing them may improve the implementation of infant feeding guidelines in the future. Aim: To assess the confidence in knowledge and knowledge of selected infant feeding statements, and to assess selected infant feeding practices among parents of infants aged 4 to 12 months. Material and methods: A cross-sectional study was conducted in Poland. Self-selected parents were recruited through the Internet. Data from 6934 responders, almost exclusively (99.2%) mothers, were analysed. Results and discussion: Almost 68.8% of mothers assessed their knowledge of infant complementary feeding practices as sufficient. In line with current recommendations, most mothers agreed that fruits are a good source of vitamins for infants (75.3%); and disagreed that fruit juices should be given to infants younger than age 1 year (61.1%); plant-based beverages are an appropriate alternative to breast-milk substitutes for infants (59.9%); potentially allergenic foods should be included into infant diet only after other complementary food had been introduced (68.4%), and, the introduction of other potentially allergenic foods should be delayed, if symptoms following the introduction of a new food occur (55.7%). However, some participants, albeit minority, reported the introduction of plant-based beverages (12.5%), cow’s milk (16.7%), and fruit juices to infants younger than 12 months (15.8%), thus, it was against the current recommendations. Conclusions: A discrepancy exists between the confidence in knowledge and knowledge of selected infant feeding statements and feeding practices among Polish mothers of infants aged 4 to 12 months. [ABSTRACT FROM AUTHOR]
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- 2022
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54. Single Nucleotide Polymorphisms of Interleukins and Toll-like Receptors and Neuroimaging Results in Newborns with Congenital HCMV Infection
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Czech-Kowalska, Justyna, primary, Jedlińska-Pijanowska, Dominika, additional, Pleskaczyńska, Agata K., additional, Niezgoda, Anna, additional, Gradowska, Kinga, additional, Pietrzyk, Aleksandra, additional, Jurkiewicz, Elżbieta, additional, Jaworski, Maciej, additional, and Kasztelewicz, Beata, additional
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- 2021
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55. Insulinoma in pregnancy (a case presentation and systematic review of the literature)
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Dobrindt, Eva M., Mogl, Martina, Goretzki, Peter E., Pratschke, Johann, and Dukaczewska, Agata K.
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hypoglycemia ,endogenous hyperinsulinism ,Insulinoma ,Review ,neuroendocrine tumors ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,MEN I ,lcsh:RC254-282 ,600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit - Abstract
Insulinomas are rare, benign and functional tumors that coincidentally may become overt during pregnancy or in the post-partum period. As the general symptoms of a pregnancy might cover the clinical presentation, diagnosing remains challenging. We present one additional case of a post-partum insulinoma, combined with a systematic review of the literature to sum up relevant details in diagnosis and treatment. A systematic request of Pubmed/Medline was conducted using the following terms: "insulinoma AND pregnancy" and "insulinoma" for a second request of ClinicalTrials.gov. All publications concerning pregnant or post-partum women with insulinoma were included. Thirty-six cases could be identified for analysis. Each publication was reviewed for demographic, diagnostic and therapeutic data. The most frequent clinical signs were unconsciousness and neurological symptoms. 64.9% were diagnosed during early pregnancy and 35.1% post-partum. 91.9% underwent surgery with a third resected during pregnancy without severe influence on fetal or maternal outcome. Three patients died of metastatic disease or misdiagnosing, two of them miscarried. Insulinoma in pregnancy is rare but should be considered in case of unclear hyperinsulinemic hypoglycemia. Surgery can be performed during the second trimester or post-partum with promising outcome.
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- 2021
56. Increase in gut microbiota after immune suppression in baculovirus-infected larvae.
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Agata K Jakubowska, Heiko Vogel, and Salvador Herrero
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Spodoptera exigua microarray was used to determine genes differentially expressed in S. exigua cells challenged with the species-specific baculovirus SeMNPV as well as with a generalist baculovirus, AcMNPV. Microarray results revealed that, in contrast to the host transcriptional shut-off that is expected during baculovirus infection, S. exigua cells showed a balanced number of up- and down-regulated genes during the first 36 hours following the infection. Many immune-related genes, including pattern recognition proteins, genes involved in signalling and immune pathways as well as immune effectors and genes coding for proteins involved in the melanization cascade were found to be down-regulated after baculovirus infection. The down-regulation of immune-related genes was confirmed in the larval gut. The expression of immune-related genes in the gut is known to affect the status of gut microorganisms, many of which are responsible for growth and development functions. We therefore asked whether the down-regulation that occurs after baculovirus infection affects the amount of gut microbiota. An increase in the gut bacterial load was observed and we hypothesize this to be as a consequence of viral infection. Subsequent experiments on virus performance in the presence and absence of gut microbiota revealed that gut bacteria enhanced baculovirus virulence, pathogenicity and dispersion. We discuss the host immune response processes and pathways affected by baculoviruses, as well as the role of gut microbiota in viral infection.
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- 2013
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57. Comprehensive analysis of gene expression profiles of the beet armyworm Spodoptera exigua larvae challenged with Bacillus thuringiensis Vip3Aa toxin.
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Yolanda Bel, Agata K Jakubowska, Juliana Costa, Salvador Herrero, and Baltasar Escriche
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Medicine ,Science - Abstract
Host-pathogen interactions result in complex relationship, many aspects of which are not completely understood. Vip proteins, which are Bacillus thuringensis (Bt) insecticidal toxins produced during the vegetative stage, are selectively effective against specific insect pests. This new group of Bt proteins represents an interesting alternative to the classical Bt Cry toxins because current data suggests that they do not share the same mode of action. We have designed and developed a genome-wide microarray for the beet armyworm Spodoptera exigua, a serious lepidopteran pest of many agricultural crops, and used it to better understand how lepidopteran larvae respond to the treatment with the insecticidal protein Vip3Aa. With this approach, the goal of our study was to evaluate the changes in gene expression levels caused by treatment with sublethal doses of Vip3Aa (causing 99% growth inhibition) at 8 and 24 h after feeding. Results indicated that the toxin provoked a wide transcriptional response, with 19% of the microarray unigenes responding significantly to treatment. The number of up- and down-regulated unigenes was very similar. The number of genes whose expression was regulated at 8 h was similar to the number of genes whose expression was regulated after 24 h of treatment. The up-regulated sequences were enriched for genes involved in innate immune response and in pathogen response such as antimicrobial peptides (AMPs) and repat genes. The down-regulated sequences were mainly unigenes with homology to genes involved in metabolism. Genes related to the mode of action of Bt Cry proteins were found, in general, to be slightly overexpressed. The present study is the first genome-wide analysis of the response of lepidopteran insects to Vip3Aa intoxication. An insight into the molecular mechanisms and components related to Vip intoxication will allow designing of more effective management strategies for pest control.
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- 2013
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58. Specific expression of a BTB-ZF transcription factor defines innate-like regulatory T cells that are essential for intestinal homeostasis
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Krzyzanowska, Agata K, primary, Haynes, Rashade A, additional, Kovalovsky, Damian, additional, Edelblum, Karen L, additional, Corcoran, Lynn M, additional, Rabson, Arnold B, additional, Denzin, Lisa K, additional, and Sant'Angelo, Derek B, additional
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- 2021
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59. 14-3-3 phosphoprotein interaction networks – does isoform diversity present functional interaction specification?
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Anna-Lisa ePaul, Fiona C. Dension, Eric R. Schultz, Agata K. Zupanska, and Robert J. Ferl
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Arabidopsis ,plant ,Subcellular localization ,GRF ,14-3-3 isoform specificity ,Plant culture ,SB1-1110 - Abstract
The 14-3-3 proteins have emerged as major phosphoprotein interaction proteins and thereby constitute a key node in the Arabidopsis Interactome Map, a node through which a large number of important signals pass. Throughout their history of discovery and description, the 14-3-3s have been described as protein families and there has been some evidence that the different 14-3-3 family members within any organisms might carry isoform specific functions. However there has also been evidence for redundancy of 14-3-3 function, suggesting that the perceived 14-3-3 diversity may be the accumulation of neutral mutations over evolutionary time and as some 14-3-3 genes develop tissue or organ specific expression. This situation has led to a currently unresolved question – does 14-3-3 isoform sequence diversity indicate functional diversity at the biochemical or cellular level? We discuss here some of the key observations on both sides of the resulting debate, and present a set of contrastable observations to address the theory that sequence diversity does lead to functional diversity among 14-3-3 isoforms. The resulting model suggests strongly that there are indeed functional specificities in the 14-3-3s of Arabidopsis. The model further suggests that 14-3-3 diversity and specificity should enter into the discussion of 14-3-3 roles in signal transduction and be directly approached in experiments designed to address 14-3-3 functional roles. It is hoped that future studies involving 14-3-3s will continue to address specificity in experimental design and analysis.
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- 2012
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60. Minimal Incision Face-Lifting
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Rousso, Daniel E. and Brys, Agata K.
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- 2012
61. Distinct structural domains in the planarian brain defined by the expression of evolutionarily conserved homeobox genes
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Umesono, Y., Watanabe, Kenji, and Agata, K.
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- 1999
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62. Extended Lower Eyelid Skin Muscle Blepharoplasty
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Rousso, Daniel E. and Brys, Agata K.
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- 2011
63. Evaluation of physiologic and abnormal glucose uptake in palatine tonsils: differential diagnostics with sequential dual-time-point 2-deoxy-2-[18F]FDG PET/CT
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Pietrzak, Agata K., primary, Kazmierska, Joanna, additional, Marszalek, Andrzej, additional, and Cholewinski, Witold, additional
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- 2020
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64. Regulatory T cells fail to suppress CD4+ T-bet+ T cells in relapsing multiple sclerosis patients
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Frisullo, Giovanni, Nociti, Viviana, Iorio, Raffaele, Patanella, Agata K., Caggiula, Marcella, Marti, Alessandro, Sancricca, Cristina, Angelucci, Francesco, Mirabella, Massimiliano, Tonali, Pietro A., and Batocchi, Anna P.
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- 2009
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65. COX II Expression in Laryngeal Lesions
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Brys, Agata K. and Haben, Michael C.
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- 2008
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66. Drug Delivery Systems for the Controlled Delivery of Berberine
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Agata K. Giuffrida, Simona Cianciolo, and Rosario Pignatello
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chemistry.chemical_compound ,Berberine ,chemistry ,business.industry ,Controlled delivery ,Drug delivery ,Medicine ,Pharmacology ,business - Published
- 2019
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67. An on-line support tool to reduce exercise-related hypoglycaemia and improve confidence to exercise in type 1 diabetes
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Jane Overland, Agata K. Piotrowicz, Margaret McGill, Stephen M. Twigg, Lynda Molyneaux, and Nathan A. Johnson
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Research design ,Adult ,Blood Glucose ,Male ,medicine.medical_specialty ,Longitudinal study ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,030204 cardiovascular system & hematology ,law.invention ,03 medical and health sciences ,Hba1c level ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Randomized controlled trial ,Patient Education as Topic ,law ,Internal medicine ,Diabetes mellitus ,Surveys and Questionnaires ,Internal Medicine ,medicine ,Clinical endpoint ,Humans ,Hypoglycemic Agents ,Insulin ,Longitudinal Studies ,Prospective Studies ,Exercise ,Glycated Hemoglobin ,Type 1 diabetes ,business.industry ,Blood Glucose Self-Monitoring ,Middle Aged ,medicine.disease ,Hypoglycemia ,Fructosamine ,Diabetes Mellitus, Type 1 ,chemistry ,Female ,business - Abstract
Hypoglycaemia related to exercise and lack of confidence to exercise, are common in T1DM. An online educational exercise tool (ExT1D) was tested to determine whether these parameters can be improved.Thirty two adults with T1DM (50%M, age 35.8 ± 9.5 yr diabetes duration 12.3 ± 9.9 yr, median HbA1c 7.1%[ICR 6.4-7.7] NGSPU) exercising ≥ 60 min/week enrolled in a RCT utilising ExT1D, with partial cross-over design. The primary end-point was Exercise-related hypoglycaemia (ErH) number corrected for exercise session number, with ErH defined as CGM episodes 4.0 mM occurring within 24 h of exercise. Secondary RCT endpoints were total ErH duration, and ErH duration/episode. A pre-defined longitudinal analysis with each subject compared with their baseline was also undertaken, for the three ErH parameters, and using fear of hypoglycaemia questionnaires.In the RCT a 50% lower median ErH number (P = 0.6) (37% lower ErH number per exercise session (P = 0.06, NS primary endpoint) occurred in the Intervention vs Control group. A 49% lower ErH duration per episode (P = 0.2), and 80% less ErH duration (P = 0.3), were also observed in the Intervention vs Control group. In the longitudinal study, ErH number reduced by 43% (P = 0.088), ErH duration per episode by 52% (P = 0.157) and total duration of ErH fell by 71% (P = 0.015). Confidence to prevent glucose lowering by exercise also improved (P = 0.039). Post-hoc analysis showed those with the greatest ErH events at baseline benefited most. Fructosamine and HbA1c levels were unchanged from baseline.ExT1D can reduce exercise-related hypoglycaemia and provide greater confidence to exercise.
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- 2019
68. Cell adhesion to extracellular matrix is different in marine hydrozoans compared with vertebrates
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Schmid, V., Aeschbach, B., Agata, K., Kosaka, J., Reber-Müller, S., Sprenger, N., and Eguchi, G.
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- 1995
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69. Specific expression of a BTB-ZF transcription factor defines innate-like regulatory T cells that are essential for intestinal homeostasis
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Agata K Krzyzanowska, Rashade A Haynes, Damian Kovalovsky, Karen L Edelblum, Lynn M Corcoran, Arnold B Rabson, Lisa K Denzin, and Derek B Sant'Angelo
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Immunology ,Immunology and Allergy - Abstract
Regulatory T cells (Tregs) play a pivotal role in regulating immune responses and are a significant source of the anti-inflammatory cytokine IL-10 in the intestine. Defects in Tregs function lead to the development of systemic and intestinal inflammation. Using a single-cell BTB-ZF transcription factor expression analysis, we identified a distinct subset of Tregs. These cells have an activated phenotype (CD62Llo, CD44hi) and constitutively express the Il10. Moreover, these Tregs accumulate in the intestine and expand in number following DSS induced colitis. The targeted deletion of the defining transcription factor impaired these cells' ability to secrete IL-10, leading to significant disruptions in mucosal architecture and the development of intestinal inflammation following treatment with dextran sodium sulfate (DSS). Thus, the conditional knockout (cKO) mice developed much more severe symptoms leading to the death of 60% of them. In contrast, all wild type mice fully recovered. Notably, adoptive transfer of this Treg subset was sufficient to prevent the death of cKO mice. In comparison, the transfer of cKO Tregs was not able to rescue the mice. Collectively, our data show that we have identified a distinct subset of Tregs and determined a specific member of the BTB-ZF family that controls their function. This rare population of T cells has potent immunosuppressive abilities and, we propose, rather than acutely producing IL-10 in response to activation, these cells maintain intestinal homeostasis through continuous secretion of IL-10. Our findings imply that analogous to NKT cells, some thymic-derived Tregs have innate-like effector functions that are not dependent upon differentiation in the periphery.
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- 2021
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70. Search for the evolutionary origin of CNS: the study of gene expression of hydra neural cells and planarian brain
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Gojobori, T., Mineta, K., Hwang, J. S., Agata, K., and Ikeo, K.
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- 2004
71. Rhabdomyoma of the larynx: case report and clinical and pathologic review
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Brys, Agata K., Sakai, Osamu, DeRosa, Jaimie, and Shapshay, Stanley M.
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Laryngeal diseases -- Case studies ,Hoarseness -- Case studies ,Rhabdomyolysis -- Research - Abstract
Abstract We describe a case involving a 79-year-old man with symptoms of slowly progressive hoarseness resulting from a rhabdomyoma originating deep to the right true and false vocal folds. We [...]
- Published
- 2005
72. Myosin light chain kinase steady-state kinetics: comparison of smooth muscle myosin II and nonmuscle myosin IIB as substrates
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Josh E. Baker, Brian D. Haldeman, Diego B. Alcala, Agata K. Krenc, Christine R. Cremo, Richard K. Brizendine, and Ronald S. Rock
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0301 basic medicine ,Gene isoform ,Myosin light-chain kinase ,Meromyosin ,030102 biochemistry & molecular biology ,Heavy meromyosin ,Chemistry ,Clinical Biochemistry ,macromolecular substances ,Cell Biology ,General Medicine ,Anatomy ,Biochemistry ,03 medical and health sciences ,Myosin head ,030104 developmental biology ,Myosin ,Biophysics ,Phosphorylation ,MYH7 - Abstract
Myosin light chain kinase (MLCK) phosphorylates S19 of the myosin regulatory light chain (RLC), which is required to activate myosin's ATPase activity and contraction. Smooth muscles are known to display plasticity in response to factors such as inflammation, developmental stage, or stress, which lead to differential expression of nonmuscle and smooth muscle isoforms. Here, we compare steady-state kinetics parameters for phosphorylation of different MLCK substrates: (1) nonmuscle RLC, (2) smooth muscle RLC, and heavy meromyosin subfragments of (3) nonmuscle myosin IIB, and (4) smooth muscle myosin II. We show that MLCK has a ~2-fold higher kcat for both smooth muscle myosin II substrates compared with nonmuscle myosin IIB substrates, whereas Km values were very similar. Myosin light chain kinase has a 1.6-fold and 1.5-fold higher specificity (kcat /Km ) for smooth versus nonmuscle-free RLC and heavy meromyosin, respectively, suggesting that differences in specificity are dictated by RLC sequences. Of the 10 non-identical RLC residues, we ruled out 7 as possible underlying causes of different MLCK kinetics. The remaining 3 residues were found to be surface exposed in the N-terminal half of the RLC, consistent with their importance in substrate recognition. These data are consistent with prior deletion/chimera studies and significantly add to understanding of MLCK myosin interactions. SIGNIFICANCE OF THE STUDY Phosphorylation of nonmuscle and smooth muscle myosin by myosin light chain kinase (MLCK) is required for activation of myosin's ATPase activity. In smooth muscles, nonmuscle myosin coexists with smooth muscle myosin, but the two myosins have very different chemo-mechanical properties relating to their ability to maintain force. Differences in specificity of MLCK for different myosin isoforms had not been previously investigated. We show that the MLCK prefers smooth muscle myosin by a significant factor. These data suggest that nonmuscle myosin is phosphorylated more slowly than smooth muscle myosin during a contraction cycle.
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- 2016
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73. Gasmin ( BV2-5 ), a polydnaviral-acquired gene in Spodoptera exigua. Trade-off in the defense against bacterial and viral infections
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Salvador Herrero, Agata K. Jakubowska, and Laila Gasmi
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0106 biological sciences ,0301 basic medicine ,Immunology ,Bacillus thuringiensis ,Spodoptera ,Biology ,medicine.disease_cause ,01 natural sciences ,Microbiology ,03 medical and health sciences ,Exigua ,medicine ,Animals ,Gene ,Phagocytes ,Host (biology) ,Polydnavirus ,fungi ,Pathogenic bacteria ,biology.organism_classification ,Virology ,010602 entomology ,030104 developmental biology ,Larva ,Horizontal gene transfer ,Insect Proteins ,Developmental Biology - Abstract
Thousands of Hymenopteran endoparasitoids have developed a unique symbiotic relationship with viruses named polydnavirus (PDVs). These viruses immunocompromise the lepidopteran host allowing the survival of the wasp eggs. In a previous work, we have shown the horizontal transfer of some polydnaviral genes into the genome of the Lepidoptera, Spodoptera exigua. One of these genes, BV2-5 (named gasmin) interferes with actin polymerization, negatively affecting the multiplication of baculovirus in cell culture. In this work, we have focused in the study of the effect of Gasmin expression on different aspects of the baculovirus production. In addition, and since actin polymerization is crucial for phagocytosis, we have studied the effect of Gasmin expression on the larval interaction with bacterial pathogens. Over-expression of Gasmin on hemocytes significantly reduces their capacity to phagocytize the pathogenic bacteria Bacillus thuringiensis. According to these results, gasmin domestication negatively affects baculovirus replication, but increases larvae susceptibility to bacterial infections as pay off. Although the effect of Gasmin on the insect interaction with other pathogens or parasitoids remain unknown, the opposite effects described here could shape the biological history of this species based on the abundance of certain type of pathogens as suggested by the presence of truncated forms of this protein in several regions of the world.
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- 2016
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74. Exome Sequencing Implicates Impaired GABA Signaling and Neuronal Ion Transport in Trigeminal Neuralgia
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Emad N. Eskandar, Charuta G. Furey, Adam J. Kundishora, Sierra B Conine, Geyu Zhou, Shrikant Mane, Shreyas Panchagnula, Kristopher T. Kahle, J. Marc Simard, Jungmin Choi, Murat Gunel, Emre Kiziltug, Jennifer Moliterno, Raymond F. Sekula, Qiongshi Lu, Francesc López-Giráldez, Christopher Gottschalk, Seth L. Alper, Fred G. Barker, Geneviève Brindle, Wei Liu, Weilai Dong, Carol Nelson-Williams, Ashley Dunbar, Shozeb Haider, Jason L. Gerrard, Richard P. Lifton, Mohamed Chahine, Michael C. Sierant, James R. Knight, August A Allocco, Amar H. Sheth, Phan Q. Duy, Boyang Li, Barira Islam, Jonathan Gaillard, Sheng Chih Jin, Christopher Castaldi, Xinyue Li, Stephen G. Waxman, Xue Zeng, Erin Loring, Jamie Hu, Louis Étienne Lorenzo, Yves De Koninck, Sulayman D. Dib-Hajj, Karine Bachand, Annie Castonguay, and Agata K Sularz
- Subjects
0301 basic medicine ,Proband ,Protein subunit ,02 engineering and technology ,Article ,GABRG1 ,Pathogenesis ,03 medical and health sciences ,Structural Biology ,Trigeminal neuralgia ,CACNA1H ,medicine ,lcsh:Science ,Exome sequencing ,Multidisciplinary ,biology ,GABAA receptor ,Genomics ,021001 nanoscience & nanotechnology ,medicine.disease ,3. Good health ,030104 developmental biology ,biology.protein ,Cancer research ,lcsh:Q ,0210 nano-technology ,Neuroscience - Abstract
Summary Trigeminal neuralgia (TN) is a common, debilitating neuropathic face pain syndrome often resistant to therapy. The familial clustering of TN cases suggests that genetic factors play a role in disease pathogenesis. However, no unbiased, large-scale genomic study of TN has been performed to date. Analysis of 290 whole exome-sequenced TN probands, including 20 multiplex kindreds and 70 parent-offspring trios, revealed enrichment of rare, damaging variants in GABA receptor-binding genes in cases. Mice engineered with a TN-associated de novo mutation (p.Cys188Trp) in the GABAA receptor Cl− channel γ-1 subunit (GABRG1) exhibited trigeminal mechanical allodynia and face pain behavior. Other TN probands harbored rare damaging variants in Na+ and Ca+ channels, including a significant variant burden in the α-1H subunit of the voltage-gated Ca2+ channel Cav3.2 (CACNA1H). These results provide exome-level insight into TN and implicate genetically encoded impairment of GABA signaling and neuronal ion transport in TN pathogenesis., Graphical Abstract, Highlights • Genomic analysis of trigeminal neuralgia (TN) using exome sequencing • Rare mutations in GABA signaling and ion transport genes are enriched in TN cases • Generation of a genetic TN mouse model engineered with a patient-specific mutation, Neuroscience; Structural Biology; Genomics
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- 2020
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75. Familial Trigeminal Neuralgia Cases Implicate Genetic Factors in Disease Pathogenesis
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Kristopher T. Kahle, Shreyas Panchagnula, and Agata K Sularz
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business.industry ,Trigeminal neuralgia ,MEDLINE ,Medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Neurology (clinical) ,Disease pathogenesis ,Trigeminal Neuralgia ,Bioinformatics ,business ,medicine.disease - Published
- 2018
76. Improved timed-mating, non-invasive method using fewer unproven female rats with pregnancy validation via early body mass increases
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Stramek, Agata K., Johnson, Michelle L., and Taylor, Victoria J.
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medicine.medical_specialty ,040301 veterinary sciences ,Posture ,Breeding ,0403 veterinary science ,03 medical and health sciences ,Sexual Behavior, Animal ,Laboratory Animal Science ,Pregnancy ,medicine ,Animals ,Mating ,Rats, Wistar ,Vaginal cytology ,030304 developmental biology ,0303 health sciences ,General Veterinary ,Obstetrics ,business.industry ,Non invasive ,04 agricultural and veterinary sciences ,Standard methods ,medicine.disease ,Rats ,Gestation ,Animal Science and Zoology ,Female ,business ,Body mass index - Abstract
For studies requiring accurate conception-timing, reliable, efficient methods of detecting oestrus reduce time and costs, whilst improving welfare. Standard methods use vaginal cytology to stage cycle, and breeders are paired-up using approximately five proven females with proven males to achieve at least one conception on a specific day. We describe an alternative, fast, consistent, non-invasive method of timed-mating using detection of lordosis behaviour in Wistar and Lister-Hooded rats that used unproven females with high success rates. Rats under reverse lighting had body masses recorded pre-mating, day (d) 3–4, d8, d10 and d18 of pregnancy. Using only the presence of the oestrus dance to time-mate females for 24 hours, 89% of Wistar and 88% of Lister-Hooded rats successfully conceived. We did not observe behavioural oestrus in Sprague-Dawleys without males being present. Significant body mass increases following mating distinguished pregnant from non-pregnant rats, as early as d4 of pregnancy (10% ± 1.0 increase cf. 3% ± 1.2). The pattern of increases throughout gestation was similar for all pregnant rats until late pregnancy, when there were smaller increases for primi- and multiparous rats (32% ± 2.5; 25% ± 2.4), whereas nulliparous rats had highest gains (38% ± 1.5). This method demonstrated a distinct refinement of the previous timed-mating common practice used, as disturbance of females was minimised. Only the number required of nulli-, primi- or multiparous rats were mated, and body mass increases validated pregnancy status. This new breeding management method is now established practice for two strains of rat and has resulted in a reduction in animal use.
- Published
- 2018
77. An on-line support tool to reduce exercise-related hypoglycaemia and improve confidence to exercise in type 1 diabetes
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Piotrowicz, Agata K., primary, McGill, Margaret J., additional, Overland, Jane, additional, Molyneaux, Lynda, additional, Johnson, Nathan A., additional, and Twigg, Stephen M., additional
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- 2019
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78. Familial Trigeminal Neuralgia Cases Implicate Genetic Factors in Disease Pathogenesis
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Panchagnula, Shreyas, primary, Sularz, Agata K., additional, and Kahle, Kristopher T., additional
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- 2019
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79. Downregulation of a Chitin Deacetylase-Like Protein in Response to Baculovirus Infection and Its Application for Improving Baculovirus Infectivity
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Karl H.J. Gordon, Agata K. Jakubowska, Juan Ferré, Silvia Caccia, Salvador Herrero, Jakubowska, Agata K, Caccia, Silvia, Gordon, Karl H, Ferré, Juan, and Herrero, Salvador
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Baculoviridae ,Expressed Sequence Tag ,viruses ,Molecular Sequence Data ,Immunology ,Down-Regulation ,Chitin ,Moth ,Moths ,Spodoptera ,Helicoverpa armigera ,Microbiology ,Amidohydrolases ,chemistry.chemical_compound ,Downregulation and upregulation ,Chitin binding ,Virology ,Animals ,Amino Acid Sequence ,Cells, Cultured ,Phylogeny ,Oligonucleotide Array Sequence Analysis ,Expressed Sequence Tags ,Amidohydrolase ,Infectivity ,Sequence Homology, Amino Acid ,biology ,Animal ,Oligonucleotide Array Sequence Analysi ,Gene Expression Profiling ,fungi ,Sequence Analysis, DNA ,biology.organism_classification ,Isoenzyme ,Genome Replication and Regulation of Viral Gene Expression ,Chitin deacetylase ,Isoenzymes ,chemistry ,Insect Science ,Sequence Alignment - Abstract
Several expressed sequence tags (ESTs) with homology to chitin deacetylase-like protein (CDA) were selected from a group of Helicoverpa armigera genes whose expression changed after infection with H. armigera single nucleopolyhedrovirus (HearNPV). Some of these ESTs coded for a midgut protein containing a chitin deacetylase domain (CDAD). The expressed protein, HaCDA5a, did not show chitin deacetylase activity, but it showed a strong affinity for binding to chitin. Sequence analysis showed the lack of any chitin binding domain, described for all currently known peritrophic membrane (PM) proteins. HaCDA5a has previously been detected in the H. armigera PM. Such localization, together with its downregulation after pathogen infection, led us to hypothesize that this protein might be responsible for the homeostasis of the PM structure and that, by reduction of its expression, the insect may reduce PM permeability, decreasing the entrance of baculovirus. To test this hypothesis, we constructed a recombinant nucleopolyhedrovirus to express HaCDA5a in insect cells and tested its influence on PM permeability as well as the influence of HaCDA5a expression on the performance of the baculovirus. The experiments showed that HaCDA5a increased PM permeability, in a concentration-dependent manner. Bioassays on Spodoptera frugiperda and Spodoptera exigua larvae revealed that NPV expressing HaCDA5a was more infective than its parental virus. However, no difference in virulence was observed when the viruses were injected intrahemocoelically. These findings support the downregulation of a midgut-specific CDA-like protein as a possible mechanism used by H. armigera to reduce susceptibility to baculovirus by decreasing PM permeability.
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- 2010
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80. Characterization of two groups of Spodoptera exigua Hübner (Lepidoptera: Noctuidae) C-type lectins and insights into their role in defense against the densovirus JcDV
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Laila Gasmi, Salvador Herrero, Agata K. Jakubowska, Marie Helene Ogliastro, Juan Ferré, Department of Genetics and Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI-BIOTECMED), Universidad de Valencia, Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] (DGIMI), Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM), Secretaria de Estado de Investigacion, Desarrollo e Innovacion [AGL2014-57752-C2-2-R], and Université de Montpellier (UM)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut National de la Recherche Agronomique (INRA)
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0106 biological sciences ,0301 basic medicine ,JcDV ,S. frugiperda ,Physiology ,parvoviruses ,media_common.quotation_subject ,Insect ,Spodoptera ,01 natural sciences ,Biochemistry ,densovirus ,Lepidoptera genitalia ,03 medical and health sciences ,Species Specificity ,Phylogenetics ,Exigua ,Animals ,C-type lectins ,Lectins, C-Type ,innate immunity ,Phylogeny ,media_common ,Genetics ,insect immunity ,Innate immune system ,biology ,fungi ,Densovirinae ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,infection ,bracovirus ,010602 entomology ,030104 developmental biology ,Insect Science ,Larva ,Noctuidae ,Insect Proteins ,insect ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Densovirus ,immunité ,S. exigua ,pathogen ,agent pathogène - Abstract
Insect innate immunity relies on numerous soluble and membrane-bound receptors, named pattern recognition proteins (PRPs), which enable the insect to recognize pathogen-associated molecular patterns. C-type lectins are among the best-studied PRPs and constitute the most diverse family of animal lectins. Here we have characterized two groups of Spodoptera exigua C-type lectins that differ in their phylogeny, domain architecture, and expression pattern. One group includes C-type lectins with similar characteristics to other lepidopteran lectins, and a second group includes bracoviral-related lectins (bracovirus-like lectins, Se-BLLs) recently acquired by horizontal gene transfer. Subsequently, we have investigated the potential role of some selected lectins in the susceptibility to Junonia coenia densovirus (JcDV). For this purpose, three of the bracoviral-related lectins were expressed, purified, and their effect on the densovirus infection to two different Spodoptera species was assessed. The results showed that Se-BLL3 specifically reduce the mortality of Spodoptera frugiperda larvae caused by JcDV. In contrast, no such effect was observed with S. exigua larvae. In a previous work, we have also shown that Se-BLL2 increased the tolerance of S. exigua larvae to baculovirus infection. Taken together, these results confirm the implication of two different C-type lectins in antiviral response and reflect the biological relevance of the acquisition of bracoviral genes in Spodoptera spp.
- Published
- 2017
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81. ARG1 Functions in the Physiological Adaptation of Undifferentiated Plant Cells to Spaceflight
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Jordan B. Callaham, Anna-Lisa Paul, JiQiang Yao, Mingqi Zhou, Agata K. Zupanska, Eric R. Schultz, Robert J. Ferl, and Natasha J. Sng
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0301 basic medicine ,Arabidopsis ,Cell Culture Techniques ,Biology ,Bioinformatics ,Spaceflight ,law.invention ,Cell Line ,Transcriptome ,03 medical and health sciences ,Gene Knockout Techniques ,law ,Gene Expression Regulation, Plant ,Gene expression ,Arabidopsis thaliana ,Research Articles ,Regulation of gene expression ,Arabidopsis Proteins ,Weightlessness ,Gene Expression Profiling ,Space Flight ,biology.organism_classification ,Plants, Genetically Modified ,Agricultural and Biological Sciences (miscellaneous) ,Adaptation, Physiological ,Cell biology ,Gene expression profiling ,030104 developmental biology ,Space and Planetary Science ,Seedlings ,Adaptation - Abstract
Scientific access to spaceflight and especially the International Space Station has revealed that physiological adaptation to spaceflight is accompanied or enabled by changes in gene expression that significantly alter the transcriptome of cells in spaceflight. A wide range of experiments have shown that plant physiological adaptation to spaceflight involves gene expression changes that alter cell wall and other metabolisms. However, while transcriptome profiling aptly illuminates changes in gene expression that accompany spaceflight adaptation, mutation analysis is required to illuminate key elements required for that adaptation. Here we report how transcriptome profiling was used to gain insight into the spaceflight adaptation role of Altered response to gravity 1 (Arg1), a gene known to affect gravity responses in plants on Earth. The study compared expression profiles of cultured lines of Arabidopsis thaliana derived from wild-type (WT) cultivar Col-0 to profiles from a knock-out line deficient in the gene encoding ARG1 (ARG1 KO), both on the ground and in space. The cell lines were launched on SpaceX CRS-2 as part of the Cellular Expression Logic (CEL) experiment of the BRIC-17 spaceflight mission. The cultured cell lines were grown within 60 mm Petri plates in Petri Dish Fixation Units (PDFUs) that were housed within the Biological Research In Canisters (BRIC) hardware. Spaceflight samples were fixed on orbit. Differentially expressed genes were identified between the two environments (spaceflight and comparable ground controls) and the two genotypes (WT and ARG1 KO). Each genotype engaged unique genes during physiological adaptation to the spaceflight environment, with little overlap. Most of the genes altered in expression in spaceflight in WT cells were found to be Arg1-dependent, suggesting a major role for that gene in the physiological adaptation of undifferentiated cells to spaceflight. Key Words: ARG1-Spaceflight-Gene expression-Physiological adaptation-BRIC. Astrobiology 17, 1077-1111.
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- 2017
82. Patterns of Arabidopsis gene expression in the face of hypobaric stress
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Matthew Reyes, Mike Dixon, Jordan B. Callaham, Alberto Riva, Mingqi Zhou, Robert J. Ferl, Anna-Lisa Paul, Agata K. Zupanska, and Michael Stasiak
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0106 biological sciences ,0301 basic medicine ,Plant Science ,Oxygen deficiency ,Biology ,biology.organism_classification ,01 natural sciences ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Transcription (biology) ,Arabidopsis ,Gene expression ,Gene ,010606 plant biology & botany - Published
- 2017
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83. Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?
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Eric R. Schultz, Robert J. Ferl, Anna-Lisa Paul, Aparna Krishnamurthy, Natasha J. Sng, and Agata K. Zupanska
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0106 biological sciences ,0301 basic medicine ,Physiology ,Arabidopsis ,lcsh:Medicine ,Gene Expression ,Astronomical Sciences ,Plant Science ,01 natural sciences ,law.invention ,Transcriptome ,law ,Medicine and Health Sciences ,Arabidopsis thaliana ,lcsh:Science ,Genetics ,Genetic dissection ,Plant Growth and Development ,Multidisciplinary ,biology ,Genomics ,Space Exploration ,Plants ,Adaptation, Physiological ,Root Growth ,Experimental Organism Systems ,Physical Sciences ,Cellular Structures and Organelles ,Plant Cell Walls ,Cellular Types ,Transcriptome Analysis ,Research Article ,Plant Cell Biology ,Arabidopsis Thaliana ,Single gene ,Germination ,Brassica ,Spaceflight ,Research and Analysis Methods ,Genes, Plant ,03 medical and health sciences ,Cell Walls ,Model Organisms ,Plant and Algal Models ,Plant Cells ,Molecular Biology Techniques ,Molecular Biology ,Physiological Adaptation ,lcsh:R ,Gene Mapping ,Organisms ,Biology and Life Sciences ,Computational Biology ,Cell Biology ,Space Flight ,biology.organism_classification ,Genome Analysis ,Metabolic cost ,030104 developmental biology ,lcsh:Q ,Adaptation ,Physiological Processes ,010606 plant biology & botany ,Developmental Biology - Abstract
Experimentation on the International Space Station has reached the stage where repeated and nuanced transcriptome studies are beginning to illuminate the structural and metabolic differences between plants grown in space compared to plants on the Earth. Genes that are important in establishing the spaceflight responses are being identified, their roles in spaceflight physiological adaptation are increasingly understood, and the fact that different genotypes adapt differently is recognized. However, the basic question of whether these spaceflight responses are actually required for survival has yet to be posed, and the fundamental notion that spaceflight responses may be non-adaptive has yet to be explored. Therefore the experiments presented here were designed to ask if portions of the plant spaceflight response can be genetically removed without causing loss of spaceflight survival and without causing increased stress responses. The CARA experiment compared the spaceflight transcriptome responses in the root tips of two Arabidopsis ecotypes, Col-0 and WS, as well as that of a PhyD mutant of Col-0. When grown with the ambient light of the ISS, phyD plants displayed a significantly reduced spaceflight transcriptome response compared to Col-0, suggesting that altering the activity of a single gene can actually improve spaceflight adaptation by reducing the transcriptome cost of physiological adaptation. The WS genotype showed an even simpler spaceflight transcriptome response in the ambient light of the ISS, more broadly indicating that the plant genotype can be manipulated to reduce the cost of spaceflight adaptation, as measured by transcriptional response. These differential genotypic responses suggest that genetic manipulation could further reduce, or perhaps eliminate the metabolic cost of spaceflight adaptation. When plants were germinated and then left in the dark on the ISS, the WS genotype actually mounted a larger transcriptome response than Col-0, suggesting that the in-space light environment affects physiological adaptation, which implies that manipulating the local habitat can also substantially impact the metabolic cost of spaceflight adaptation.
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- 2017
84. Stress Leukogram Induced by Acute and Chronic Stress in Zebrafish (Danio rerio)
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Grzelak, Agata K, Davis, Daniel J, Caraker, Susan M, Crim, Marcus J, Spitsbergen, Jan M, and Wiedmeyer, Charles E
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Leukocyte Count ,Hydrocortisone ,Stress, Physiological ,Lymphopenia ,Fish Model ,Animals ,Zebrafish - Abstract
The use of zebrafish (Danio rerio) as an animal model for experimental studies of stress has increased rapidly over the years. Although many physiologic and behavioral characteristics associated with stress have been defined in zebrafish, the effects of stress on hematologic parameters have not been described. The purpose of our study was to induce a rise in endogenous cortisol through various acute and chronic stressors and compare the effects of these stressors on peripheral WBC populations. Acutely stressed fish underwent dorsal or full-body exposure to air for 3 min, repeated every 30 min over the course of 90 min. Chronically stressed fish underwent exposure to stressors twice daily over a period of 5 d. After the last stressful event, fish were euthanized, and whole blood and plasma were obtained. A drop of whole blood was used to create a blood smear, which was subsequently stained with a modified Wright-Giemsa stain and a 50-WBC differential count determined. Plasma cortisol levels were determined by using a commercially available ELISA. Endogenous cortisol concentrations were significantly higher in both stressed groups as compared with control fish. Acutely stressed fish demonstrated significant lymphopenia, monocytosis, and neutrophilia, compared with unstressed, control fish. Chronic stress induced lymphopenia and monocytosis but no significant changes in relative neutrophil populations in zebrafish. The changes in both stressed groups most likely are due to increases in endogenous cortisol concentrations and represent the first description of a stress leukogram in zebrafish.
- Published
- 2017
85. Co-infection with iflaviruses influences the insecticidal properties of Spodoptera exigua multiple nucleopolyhedrovirus occlusion bodies: Implications for the production and biosecurity of baculovirus insecticides
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Agata K. Jakubowska, Rosa Murillo, Arkaitz Carballo, Salvador Herrero, Trevor Williams, Primitivo Caballero, Universidad Pública de Navarra. Departamento de Producción Agraria, Nafarroako Unibertsitate Publikoa. Nekazaritza Ekoizpena Saila, IdAB – Instituto de Agrobiotecnología / Agrobioteknologiako Institutua, Ministerio de Ciencia e Innovación (España), and Ministerio de Economía y Competitividad (España)
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0106 biological sciences ,0301 basic medicine ,Life Cycles ,Insecticides ,Physiology ,Biosecurity ,SeMNPV occlusion bodies ,lcsh:Medicine ,Insect ,Pathogenesis ,Pathology and Laboratory Medicine ,Weight Gain ,01 natural sciences ,Iflavirus co-infection ,Larvae ,Invertebrate Genomics ,Medicine and Health Sciences ,lcsh:Science ,media_common ,Larva ,Multidisciplinary ,Coinfection ,Agriculture ,Genomics ,Insects ,Physiological Parameters ,Agrochemicals ,Research Article ,Arthropoda ,media_common.quotation_subject ,Biology ,Spodoptera ,Microbiology ,Lepidoptera genitalia ,03 medical and health sciences ,Extraction techniques ,Exigua ,Genetics ,Animals ,Pest Control, Biological ,Biological Insecticides ,Inoculation ,lcsh:R ,fungi ,Body Weight ,Organisms ,Biology and Life Sciences ,Pesticide ,biology.organism_classification ,Invertebrates ,RNA extraction ,Nucleopolyhedroviruses ,Research and analysis methods ,010602 entomology ,030104 developmental biology ,Biological insecticides ,Animal Genomics ,lcsh:Q ,Developmental Biology - Abstract
Biological insecticides based on Spodoptera exigua multiple nucleopolyhedrovirus (SeMNPV) can efficiently control S. exigua larvae on field and greenhouse crops in many parts of the world. Spanish wild populations and laboratory colonies of S. exigua are infected by two iflaviruses (SeIV-1 and SeIV-2). Here we evaluated the effect of iflavirus co-infection on the insecticidal characteristics of SeMNPV occlusion bodies (OBs). Overall, iflavirus co-inoculation consistently reduced median lethal concentrations (LC50) for SeMNPV OBs compared to larvae infected with SeMNPV alone. However, the speed of kill of SeMNPV was similar in the presence or absence of the iflaviruses. A reduction of the weight gain (27%) associated with iflavirus infection resulted in a 30% reduction in total OB production per larva. Adult survivors of SeMNPV OB inoculation were examined for covert infection. SeMNPV DNA was found to be present at a high prevalence in all SeIV-1 and SeIV-2 co-infection treatments. Interestingly, co-inoculation of SeMNPV with SeIV-2 alone or in mixtures with SeIV-1 resulted in a significant increase in the SeMNPV load of sublethally infected adults, suggesting a role for SeIV-2 in vertical transmission or reactivation of sublethal SeMNPV infections. In conclusion, iflaviruses are not desirable in insect colonies used for large scale baculovirus production, as they may result in diminished larval growth, reduced OB production and, depending on their host-range, potential risks to non-target Lepidoptera., This study was funded by the Spanish Ministerio de Ciencia e Innovacio´n, project number AGL2011-30352-C02-01. AC received a student scholarship from the Ministerio de Economı´a y Competitividad.
- Published
- 2017
86. Dissecting Low Atmospheric Pressure Stress: Transcriptome Responses to the Components of Hypobaria in Arabidopsis
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Michael Stasiak, Robert J. Ferl, Mike Dixon, Anna-Lisa Paul, Agata K. Zupanska, Jordan B. Callaham, Matthew Reyes, Alberto Riva, and Mingqi Zhou
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low atmospheric pressure ,0106 biological sciences ,0301 basic medicine ,Arabidopsis thaliana ,chemistry.chemical_element ,Plant Science ,Biology ,01 natural sciences ,Oxygen ,03 medical and health sciences ,Nutrient ,Arabidopsis ,Botany ,hypobaria ,Original Research ,hypoxia ,Hypoxia (environmental) ,Partial pressure ,Effects of high altitude on humans ,biology.organism_classification ,respiratory tract diseases ,Low-pressure area ,Horticulture ,030104 developmental biology ,chemistry ,Shoot ,microarray ,010606 plant biology & botany - Abstract
Controlled hypobaria presents biology with an environment that is never encountered in terrestrial ecology, yet the apparent components of hypobaria are stresses typical of terrestrial ecosystems. High altitude, for example, presents terrestrial hypobaria always with hypoxia as a component stress, since the relative partial pressure of O2 is constant in the atmosphere. Laboratory-controlled hypobaria, however, allows the dissection of pressure effects away from the effects typically associated with altitude, in particular hypoxia, as the partial pressure of O2 can be varied. In this study, whole transcriptomes of plants grown in ambient (97 kPa/pO2 = 21 kPa) atmospheric conditions were compared to those of plants transferred to five different atmospheres of varying pressure and oxygen composition for 24 h: 50 kPa/pO2 = 10 kPa, 25 kPa/pO2 = 5 kPa, 50 kPa/pO2 = 21 kPa, 25 kPa/pO2 = 21 kPa, or 97 kPa/pO2 = 5 kPa. The plants exposed to these environments were 10 day old Arabidopsis seedlings grown vertically on hydrated nutrient plates. In addition, 5 day old plants were also exposed for 24 h to the 50 kPa and ambient environments to evaluate age-dependent responses. The gene expression profiles from roots and shoots showed that the hypobaric response contained more complex gene regulation than simple hypoxia, and that adding back oxygen to normoxic conditions did not completely alleviate gene expression changes in hypobaric responses.
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- 2017
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87. Midgut aminopeptidase N isoforms from Ostrinia nubilalis: Activity characterization and differential binding to Cry1Ab and Cry1Fa proteins from Bacillus thuringiensis
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Agata K. Jakubowska, Yolanda Bel, Juan Ferré, Cristina M. Crava, and Baltasar Escriche
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Gene isoform ,endocrine system ,CD13 Antigens ,Moths ,Biochemistry ,Substrate Specificity ,Ostrinia ,Hemolysin Proteins ,Bacterial Proteins ,Bacillus thuringiensis ,Toxicity Tests ,Sf9 Cells ,Animals ,Receptor ,Molecular Biology ,chemistry.chemical_classification ,Bacillus thuringiensis Toxins ,biology ,fungi ,Midgut ,biology.organism_classification ,Ligand (biochemistry) ,Molecular biology ,Endotoxins ,Gastrointestinal Tract ,Isoenzymes ,Blot ,Enzyme ,chemistry ,Insect Science ,Protein Binding - Abstract
Aminopeptidase N (APN) isoforms from Lepidoptera are known for their involvement in the mode of action of insecticidal Cry proteins from Bacillus thuringiensis. These enzymes belong to a protein family with at least eight different members that are expressed simultaneously in the midgut of lepidopteran larvae. Here, we focus on the characterization of the APNs from Ostrinia nubilalis (OnAPNs) to identify potential Cry receptors. We expressed OnAPNs in insect cells using a baculovirus system and analyzed their enzymatic activity by probing substrate specificity and inhibitor susceptibility. The interaction with Cry1Ab and Cry1Fa proteins (both found in transgenic insect-resistant maize) was evaluated by ligand blot assays and immunocytochemistry. Ligand blots of brush border membrane proteins showed that both Cry proteins bound mainly to a 150 kDa-band, in which OnAPNs were greatly represented. Binding analysis of Cry proteins to the cell-expressed OnAPNs showed that OnAPN1 interacted with both Cry1Ab and Cry1Fa, whereas OnAPN3a and OnAPN8 only bound to Cry1Fa. Two isoforms, OnAPN2 and OnAPN3b, did not interact with any of these two proteins. This work provides the first evidence of a differential role of OnAPN isoforms in the mode of action of Cry proteins in O. nubilalis.
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- 2013
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88. Lactobacillus plantarum attenuates anxiety-related behavior and protects against stress-induced dysbiosis in adult zebrafish
- Author
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Susheel Bhanu Busi, Daniel J. Davis, Eldin Jašarević, Aaron C. Ericsson, Holly M. Doerr, Agata K. Grzelak, and Elizabeth C. Bryda
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0301 basic medicine ,Central nervous system ,Gut flora ,Anxiety ,Serotonergic ,Article ,law.invention ,Microbiology ,03 medical and health sciences ,Probiotic ,0302 clinical medicine ,law ,medicine ,Animals ,Zebrafish ,Multidisciplinary ,biology ,Behavior, Animal ,medicine.disease ,biology.organism_classification ,Metabolic pathway ,030104 developmental biology ,medicine.anatomical_structure ,Dysbiosis ,030217 neurology & neurosurgery ,Lactobacillus plantarum ,Stress, Psychological - Abstract
The consumption of probiotics has become increasingly popular as a means to try to improve health and well-being. Not only are probiotics considered beneficial to digestive health, but increasing evidence suggests direct and indirect interactions between gut microbiota (GM) and the central nervous system (CNS). Here, adult zebrafish were supplemented with Lactobacillus plantarum to determine the effects of probiotic treatment on structural and functional changes of the GM, as well as host neurological and behavioral changes. L. plantarum administration altered the β-diversity of the GM while leaving the major core architecture intact. These minor structural changes were accompanied by significant enrichment of several predicted metabolic pathways. In addition to GM modifications, L. plantarum treatment also significantly reduced anxiety-related behavior and altered GABAergic and serotonergic signaling in the brain. Lastly, L. plantarum supplementation provided protection against stress-induced dysbiosis of the GM. These results underscore the influence commensal microbes have on physiological function in the host and demonstrate bidirectional communication between the GM and the host.
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- 2016
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89. A FLIC motility assay reveals myosin-6 coordination limited by actin filament buckling
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Jagoda Rokicka, Ronald S. Rock, and Agata K. Krenc
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0303 health sciences ,030302 biochemistry & molecular biology ,Actin remodeling ,macromolecular substances ,Fluorescence interference contrast microscopy ,Biology ,Microfilament ,Actin cytoskeleton ,Myosin complex ,Cell biology ,Protein filament ,03 medical and health sciences ,Myosin ,Actin ,030304 developmental biology - Abstract
Teams of myosin motors carry out intracellular transport and contract the actin cytoskeleton. To fully understand the behavior of multi-myosin ensembles we need to know the properties of individual myosins and the mode of interaction between them. Current models of the interactions within the myosin complex treat the actin filament as a stiff rod, not contributing to the regulation of collective myosin dynamics. Here, we present data suggesting that force transduction through the actin filament is an important element of interaction within myosin-6 ensembles in vitro. Multiple myosin-6s coordinate their steps if they are separated by a short (and therefore high-force bearing) segment of actin. The measurements were performed using Fluorescence Interference Contrast Microscopy (FLIC) to measure small changes in the height of fluorescently labeled actin. Using FLIC, we assign the positions of myosins in a gliding filament assay geometry and measure their attachment time to actin. We also identify actin segments that are buckled or under tension. We show that myosin-6 holds actin about 10 nm above the surface. However, due to asynchronous myosin stepping, frequent buckles up to about 60 nm high appear. The buckle lifetime decreases as the distance between the myosin-6s is reduced, a sign of inter-motor coordination. Our data are consistent with coordinated stepping of closely spaced myosins, but uncoordinated motility with widely separated myosins where buckles can form. These features would be expected to operate on myosins in the cell, where motor spacing may vary considerably depending on the target organelle.SIGNIFICANCE STATEMENTMyosins are molecular motors that carry out intracellular transport. Interactions between the myosins are crucial for understanding their function. Using Fluorescence Interference Contrast (FLIC) microscopy we characterized the interaction between multiple myosin-6 motors immobilized to the surface of a slide and pulling the same actin filament. Our results point towards coordination of myosin steps as a mechanism governing the behavior of a multi-myosin complex. We also demonstrated the unique application of FLIC microscopy for highly parallel identification and measurement of single myosin motors in a gliding filament format. These features of FLIC enable a robust study of collective myosin dynamics.
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- 2016
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90. Skewing in Arabidopsis roots involves disparate environmental signaling pathways
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Anna-Lisa Paul, Eric R. Schultz, Agata K. Zupanska, Natasha J. Sng, and Robert J. Ferl
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0106 biological sciences ,0301 basic medicine ,Candidate gene ,Root waving ,Arabidopsis thaliana ,Arabidopsis ,Plant Science ,Computational biology ,Biology ,Microarray ,01 natural sciences ,Plant Roots ,Transcriptome ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Botany ,Gene expression ,Transcriptomics ,Gene ,Ecotype ,Arabidopsis Proteins ,Gene Expression Profiling ,biology.organism_classification ,Root skewing ,030104 developmental biology ,Order (biology) ,Cell wall organization ,Signal transduction ,Morphometrics ,010606 plant biology & botany ,Signal Transduction ,Research Article - Abstract
Background Skewing root patterns provide key insights into root growth strategies and mechanisms that produce root architectures. Roots exhibit skewing and waving when grown on a tilted, impenetrable surface. The genetics guiding these morphologies have been examined, revealing that some Arabidopsis ecotypes skew and wave (e.g. WS), while others skew insignificantly but still wave (e.g. Col-0). The underlying molecular mechanisms of skewing and waving remain unclear. In this study, transcriptome data were derived from two Arabidopsis ecotypes, WS and Col-0, under three tilted growth conditions in order to identify candidate genes involved in skewing. Results This work identifies a number of genes that are likely involved in skewing, using growth conditions that differentially affect skewing and waving. Comparing the gene expression profiles of WS and Col-0 in different tilted growth conditions identified 11 candidate genes as potentially involved in the control of skewing. These 11 genes are involved in several different cellular processes, including sugar transport, salt signaling, cell wall organization, and hormone signaling. Conclusions This study identified 11 genes whose change in expression level is associated with root skewing behavior. These genes are involved in signaling and perception, rather than the physical restructuring of root. Future work is needed to elucidate the potential role of these candidate genes during root skewing. Electronic supplementary material The online version of this article (doi:10.1186/s12870-017-0975-9) contains supplementary material, which is available to authorized users.
- Published
- 2016
91. A novel baculovirus-derived promoter with high activity in the baculovirus expression system
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José M. Escribano, Salvador Herrero, Silvia Gómez-Sebastián, María Martínez-Solís, and Agata K. Jakubowska
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0301 basic medicine ,Insect virus ,viruses ,lcsh:Medicine ,Spodoptera ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Nucleopolyhedrovirus ,Virology ,Exigua ,Polyhedrin ,Gene ,Molecular Biology ,Sf21 ,biology ,General Neuroscience ,lcsh:R ,fungi ,Promoter ,General Medicine ,biology.organism_classification ,Molecular biology ,Autographa californica ,030104 developmental biology ,Protein expression ,General Agricultural and Biological Sciences ,Biotechnology - Abstract
The baculovirus expression vector system (BEVS) has been widely used to produce a large number of recombinant proteins, and is becoming one of the most powerful, robust, and cost-effective systems for the production of eukaryotic proteins. Nevertheless, as in any other protein expression system, it is important to improve the production capabilities of this vector. The orf46 viral gene was identified among the most highly abundant sequences in the transcriptome of Spodoptera exigua larvae infected with its native baculovirus, the S. exigua multiple nucleopolyhedrovirus (SeMNPV). Different sequences upstream of the orf46 gene were cloned, and their promoter activities were tested by the expression of the GFP reporter gene using the Autographa californica nucleopolyhedrovirus (AcMNPV) vector system in different insect cell lines (Sf21, Se301, and Hi5) and in larvae from S. exigua and Trichoplusia ni. The strongest promoter activity was defined by a 120 nt sequence upstream of the ATG start codon for the orf46 gene. On average, GFP expression under this new promoter was more than two fold higher than the expression obtained with the standard polyhedrin (pph) promoter. Additionally, the orf46 promoter was also tested in combination with the pph promoter, revealing an additive effect over the pph promoter activity. In conclusion, this new characterized promoter represents an excellent alternative to the most commonly used baculovirus promoters for the efficient expression of recombinant proteins using the BEVS.
- Published
- 2016
92. Myosin light chain kinase steady-state kinetics: comparison of smooth muscle myosin II and nonmuscle myosin IIB as substrates
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Diego B, Alcala, Brian D, Haldeman, Richard K, Brizendine, Agata K, Krenc, Josh E, Baker, Ronald S, Rock, and Christine R, Cremo
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Models, Molecular ,Nonmuscle Myosin Type IIB ,Myosin Subfragments ,macromolecular substances ,Smooth Muscle Myosins ,musculoskeletal system ,Article ,Substrate Specificity ,Kinetics ,Animals ,Amino Acid Sequence ,Phosphorylation ,Chickens ,Myosin-Light-Chain Kinase - Abstract
Myosin light chain kinase (MLCK) phosphorylates S19 of the myosin regulatory light chain (RLC), which is required to activate myosin's ATPase activity and contraction. Smooth muscles are known to display plasticity in response to factors such as inflammation, developmental stage, or stress, which lead to differential expression of nonmuscle and smooth muscle isoforms. Here, we compare steady-state kinetics parameters for phosphorylation of different MLCK substrates: (1) nonmuscle RLC, (2) smooth muscle RLC, and heavy meromyosin subfragments of (3) nonmuscle myosin IIB, and (4) smooth muscle myosin II. We show that MLCK has a ~2-fold higher kcat for both smooth muscle myosin II substrates compared with nonmuscle myosin IIB substrates, whereas Km values were very similar. Myosin light chain kinase has a 1.6-fold and 1.5-fold higher specificity (kcat/Km) for smooth versus nonmuscle-free RLC and heavy meromyosin, respectively, suggesting that differences in specificity are dictated by RLC sequences. Of the 10 non-identical RLC residues, we ruled out 7 as possible underlying causes of different MLCK kinetics. The remaining 3 residues were found to be surface exposed in the N-terminal half of the RLC, consistent with their importance in substrate recognition. These data are consistent with prior deletion/chimera studies and significantly add to understanding of MLCK myosin interactions.
- Published
- 2016
93. Iflavirus increases its infectivity and physical stability in association with baculovirus
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Arkaitz Carballo, Rosa Murillo, Salvador Herrero, Trevor Williams, Agata K. Jakubowska, Primitivo Caballero, Jan W. M. van Lent, Universidad Pública de Navarra. Departamento de Producción Agraria, Nafarroako Unibertsitate Publikoa. Nekazaritza Ekoizpena Saila, IdAB - Instituto de Agrobiotecnología / Agrobioteknologiako Institutua, and Ministerio de Economía y Competitividad (España)
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0301 basic medicine ,Insect virus ,Virus virus interaction ,viruses ,030106 microbiology ,Laboratory of Virology ,lcsh:Medicine ,Spodoptera ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Virus-virus interaction ,Laboratorium voor Virologie ,03 medical and health sciences ,Virology ,Exigua ,Virus parasitism ,Baculovirus ,Agricultural Science ,Infectivity ,biology ,Ecology ,Host (biology) ,Iflavirus ,General Neuroscience ,lcsh:R ,General Medicine ,biology.organism_classification ,Co-infection ,030104 developmental biology ,Picornavirales ,EPS ,General Agricultural and Biological Sciences ,Virus–virus interaction ,Entomology - Abstract
Virus transmission and the prevalence of infection depend on multiple factors, including the interaction with other viral pathogens infecting the same host. In this study, active replication of an iflavirus, Spodoptera exigua iflavirus 1 (order Picornavirales) was observed in the offspring of insects that survived following inoculation with a pathogenic baculovirus, Spodoptera exigua multiple nucleopolyhedrovirus. Tracking the origin of the iflavirus suggested the association of this virus with the occlusion bodies of the baculovirus. Here we investigated the effect of this association on the stability and infectivity of both viruses. A reduction in baculovirus pathogenicity, without affecting its infectivity and productivity, was observed when associated with the iflavirus. In contrast, viral association increased the infectivity of the iflavirus and its resistance to ultraviolet radiation and high temperature, two of the main factors affecting virus stability in the field. In addition, electron microscopy analysis revealed the presence of particles resembling iflavirus virions inside the occlusion bodies of the baculovirus, suggesting the possible co-occlusion of both viruses. Results reported here are indicative of facultative phoresis of a virus and suggest that virus–virus interactions may be more common than currently recognized, and may be influential in the ecology of baculovirus and host populations and in consequence in the use of baculoviruses as biological insecticides., This study received financial support from the Spanish Ministry for Science and Technology (AGL2011-30352-C02 and AGL2014-57752-C2). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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- 2016
94. Minimal Incision Face-Lifting
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Daniel E, Rousso, Agata K, Brys, and Brys, Agata
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Male ,medicine.medical_specialty ,medicine.medical_treatment ,Face lifting ,Cicatrix ,Postoperative Complications ,Chemexfoliation ,medicine ,Operating time ,Humans ,Minimally Invasive Surgical Procedures ,Rejuvenation ,Public awareness ,Postoperative Care ,business.industry ,Patient Selection ,Middle Aged ,Minimal incision ,Surgery ,Access to information ,Rhytidoplasty ,Female ,business ,Neck ,Anesthesia, Local ,Rhytidectomy - Abstract
Rhytidectomy has been performed for over 100 years, but only more recently has it become generally accepted by society. Recent improvements in access to information has produced more public awareness of the possible aesthetic enhancements. Additionally, there has been a trend for the younger patient to seek cosmetic surgery, often requesting procedures with minimal incisions and less downtime. The mini-lift, with its decreased operating time and expense, rapid recovery, as well as more limited incisions and tissue elevation, is an ideal procedure for patients with a smaller degree of cheek and neck laxity. We describe our concept of the mini-lift and address what results can be expected.
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- 2012
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95. Genome sequence of SeIV-1, a novel virus from the Iflaviridae family infective to Spodoptera exigua
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Agata K. Jakubowska, Anabel Millán-Leiva, Juan Ferré, and Salvador Herrero
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viruses ,Molecular Sequence Data ,Insect Viruses ,Spodoptera ,Genome ,Virus ,RNA Virus Infections ,Exigua ,Animals ,RNA Viruses ,Amino Acid Sequence ,Pest Control, Biological ,Ecology, Evolution, Behavior and Systematics ,Expressed Sequence Tags ,Viral Structural Proteins ,Genetics ,Infectivity ,biology ,fungi ,biology.organism_classification ,Virology ,Intestines ,Iflaviridae ,Novel virus ,Host-Pathogen Interactions ,RNA, Viral ,Picornavirales - Abstract
Analysis of the transcriptome of Spodoptera exigua larvae revealed the presence of several ESTs with homology to virus of the order Picornavirales and with the highest similarity to Infectious flacherie virus (Iflaviridae) that infects Bombyx mori larvae. Iflaviridae is a recently defined family of insect-infecting viruses that consist of positive single strand RNA genomes translated into a single polyprotein of around 3000 amino acids long. Using the sequence information derived from the obtained ESTs, we have completed the genomic sequence of this virus. The novel S. exigua iflavirus (SeIV-1) has a genome of 10.3 kb and codes for a 3222 aa polyprotein. Expression analysis has revealed the presence of the virus in all tissues tested and insect stages, being more abundant in the midgut of the larvae. High infectivity of this virus against S. exigua has been demonstrated after observing the presence of this virus in different colonies that were reared in the same chamber with the virus-infected colony, despite no evidence of pathological effects. Further study of viral covert infections of SeIV-1 could lead to a better understanding of its pathological effect as well as any possible interaction with other microbial pathogens used for the control of this pest.
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- 2012
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96. Spaceflight Transcriptomes: Unique Responses to a Novel Environment
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Agata K. Zupanska, Dejerianne T. Ostrow, Yijun Sun, Claire E. Amalfitano, Jian-Liang Li, Yanping Zhang, Anna-Lisa Paul, William G. Farmerie, Savita Shanker, and Robert J. Ferl
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Extraterrestrial Environment ,Arabidopsis ,Biology ,Genes, Plant ,Bioinformatics ,Spaceflight ,law.invention ,Transcriptome ,Gene Expression Regulation, Plant ,law ,Gene expression ,Gene ,Research Articles ,Cells, Cultured ,Oligonucleotide Array Sequence Analysis ,Computers ,Gene Expression Profiling ,Temperature ,Reproducibility of Results ,Space Flight ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Cell biology ,Gene expression profiling ,Seedlings ,Space and Planetary Science ,Sample Size ,Adaptation ,DNA microarray - Abstract
The spaceflight environment presents unique challenges to terrestrial biology, including but not limited to the direct effects of gravity. As we near the end of the Space Shuttle era, there remain fundamental questions about the response and adaptation of plants to orbital spaceflight conditions. We address a key baseline question of whether gene expression changes are induced by the orbital environment, and then we ask whether undifferentiated cells, cells presumably lacking the typical gravity response mechanisms, perceive spaceflight. Arabidopsis seedlings and undifferentiated cultured Arabidopsis cells were launched in April, 2010, as part of the BRIC-16 flight experiment on STS-131. Biologically replicated DNA microarray and averaged RNA digital transcript profiling revealed several hundred genes in seedlings and cell cultures that were significantly affected by launch and spaceflight. The response was moderate in seedlings; only a few genes were induced by more than 7-fold, and the overall intrinsic expression level for most differentially expressed genes was low. In contrast, cell cultures displayed a more dramatic response, with dozens of genes showing this level of differential expression, a list comprised primarily of heat shock–related and stress-related genes. This baseline transcriptome profiling of seedlings and cultured cells confirms the fundamental hypothesis that survival of the spaceflight environment requires adaptive changes that are both governed and displayed by alterations in gene expression. The comparison of intact plants with cultures of undifferentiated cells confirms a second hypothesis: undifferentiated cells can detect spaceflight in the absence of specialized tissue or organized developmental structures known to detect gravity. Key Words: Tissue culture—Microgravity—Low Earth orbit—Space Shuttle—Microarray. Astrobiology 12, 40–56.
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- 2012
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97. The performance of KSC Fixation Tubes with RNALater for orbital experiments: A case study in ISS operations for molecular biology
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Anna-Lisa Paul, George Guerra, April Spinale, Robert J. Ferl, Agata K. Zupanska, David R. Cox, Susan Manning-Roach, and David W. Reed
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Atmospheric Science ,Geophysics ,Space and Planetary Science ,Software deployment ,Computer science ,Flight operations ,International Space Station ,Systems engineering ,Aerospace Engineering ,General Earth and Planetary Sciences ,Astronomy and Astrophysics ,Space life sciences ,Plant biology - Abstract
Molecular biology experiments on the International Space Station (ISS) continue to face challenges of sample harvesting and sample return to earth for post flight analysis; however, the use of Kennedy Space Center Fixation Tubes filled with RNALater has proven to be a robust solution to many of these challenges. While it is clear that one direction of future spaceflight experimentation may be towards enhanced on-orbit analytical capabilities, the rapid progress of earth-bound analytical capacity dictates that facile return of molecular biology samples from the ISS will continue to be a mainstay of space life sciences research and flight operations. In this paper we present a case study of the successful performance of KFTs and RNALater over a broad set of operational conditions of ascent configuration, on-orbit experiment use, on-orbit storage and sample return configurations that are unique to ISS current operations and constraints. We also provide observations on performance limits and discuss deployment opportunities and scenarios that are consistent with continued successful ISS molecular biology experimentation.
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- 2011
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98. Extended Lower Eyelid Skin Muscle Blepharoplasty
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Daniel E. Rousso and Agata K. Brys
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Blepharoplasty ,Aging ,medicine.medical_specialty ,Percutaneous ,business.operation ,medicine.medical_treatment ,Dermatologic Surgical Procedures ,Subcutaneous Fat ,Facial Muscles ,Patient Care Planning ,Surgical Flaps ,Postoperative Complications ,Ptosis ,medicine ,Deformity ,Humans ,Minimally Invasive Surgical Procedures ,Postoperative Care ,business.industry ,Dissection ,Patient Selection ,Eyelids ,Endoscopy ,Hypertrophy ,Surgery ,Plastic surgery ,medicine.anatomical_structure ,Rhytidoplasty ,Eyelid ,medicine.symptom ,business ,Transorbital - Abstract
A patient presenting to a facial plastic surgeon with lower eyelid aging often has accompanying midface descent. Many surgical options exist to address these deformities. Blepharoplasty techniques include both the transcutaneous skin-muscle flap as well as the transconjunctival approach. The midface can be addressed via a multitude of techniques, including percutaneous suspension of the malar fat pad, deep plane dissections, subperiosteal and endoscopic midface lifts, and transorbital approaches. Patients who have some midface ptosis but do not meet the standard criteria for formal midface lifting, or who want to avoid the extended recovery associated with such techniques, could benefit from less invasive procedures. We propose the extended skin muscle blepharoplasty to address midface descent and lower lid aging to patients as an alternative to formal midface lifting. The extended skin muscle blepharoplasty is an excellent technique for patients with orbicularis hypertrophy, skin redundancy, a tear trough deformity, and premalar ptosis, as it addresses each of these deformities with minimal downtime. Results for patients with mild but visible midface descent are gratifying.
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- 2011
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99. Species-specific polymerase chain reaction primers for simple detection of Bursaphelenchus fraudulentus (Nematoda: Parasitaphelenchidae)
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Marek Tomalak, Anna Filipiak, and Agata K. Jakubowska
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Nematology ,Nematode ,biology ,Genus ,Xylophilus ,Botany ,Bursaphelenchus xylophilus ,Bursaphelenchus ,Plant quarantine ,PEST analysis ,biology.organism_classification ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Nematology , 2010, Vol. 12(1), 157-160 Short communication Species-specific polymerase chain reaction primers for simple detection of Bursaphelenchus fraudulentus (Nematoda: Parasitaphelenchidae) Anna F I L I P I A K 1 , ∗ , Agata J AKUBOW SKA 1 , 2 and Marek T OMALAK 1 Bursaphelenchus fraudulentus Ruhm, 1956 (Nema- toda: Parasitaphelenchidae) is a tree-inhabiting species frequently found in Europe (Ruhm, 1956; Schauer-Blume & Sturhan, 1989; Tomalak, 2004; Carletti et al ., 2005) and Asia (Braasch et al ., 2001). It is primarily found in dy- ing or dead deciduous trees (Ruhm, 1956; Schauer-Blume & Sturhan, 1989), although occasionally reported from conifers (Braasch et al ., 2001). Within the genus the spe- cific morphological characters (i.e. , vulval flap, shape of spicules, position of caudal papillae and presence of four incisures in the lateral fields) place B. fraudulentus into a distinct xylophilus -group which comprises eight other, morphologically similar, species, including the quarantine pest B. xylophilus (Gu et al ., 2008). Reliable methods of taxonomic identification of these species are therefore of particular interest to plant quarantine services. Several molecular techniques have been developed and used for identification of Bursaphelenchus spp. (Wang et al. , 1999; Matsunaga & Togashi, 2004; Burgermeister et al ., 2005; Castagnone et al. , 2005; Leal et al ., 2005, 2007) with ITS-RLFP analysis the most widely used in research and quarantine practice. An alternative method, based on a simple PCR amplification with primers specific for B. xylophilus and B. mucronatus (Matsunaga & Togashi, 2004), enables rapid and precise species identification, even from a single nematode (Filipiak et al ., 2007). Both native European species from the xylophilus - group, i.e. , B. mucronatus and B. fraudulentus , are rela- tively common and harmless to trees. They can be mor- phologically difficult to distinguish from each other and from the quarantine pest B. xylophilus. The provision of PCR primers specific for the DNA of B. fraudulentus , in addition to those already existing for B. xylophilus and B. 1 Department of Biological Pest Control and Quarantine, Institute of Plant Protection, Wladyslawa Wegorka 20, Poznan, 60-318, Poland 2 Department of Genetics, University of Valencia, Dr. Moliner 50, 46-100, Burjassot, Spain ∗ Corresponding author, e-mail: A.Filipiak@ior.poznan.pl Received: 22 October 2008; revised: 26 June 2009 Accepted for publication: 29 June 2009 Keywords: Bursaphelenchus xylophilus -group, diagnostics, molecular. mucronatus (Matsunaga & Togashi, 2004), enhances the utility of this method. The main objectives of our research were to sequence the ITS regions of the B. fraudulentus genome and to design specific primers for PCR amplifica- tion. Eight isolates of B. fraudulentus , two of B. mucrona- tus and one of B. xylophilus were examined. The Aus- trian (Osterreich), Russian (DE10w), German (Helmstedt and H26), and Hungarian (Ungarn) isolates of B. fraudu- lentus and the isolate of B. xylophilus (China) were ob- tained from the nematode collection of the Federal Re- search Centre for Cultivated Plants (formerly Federal Bi- ological Research Centre for Agriculture and Forestry – BBA), Braunschweig, Germany (Dr T. Schroder). All the remaining nematode populations were isolated from in- fested trees in Poland. The populations of B. fraudulentus originated from Poznan (PL-01 and PL-05) and Kornik (PL-04) and those of B. mucronatus from Nowy Tomysl (NTo-01) and Slawa Slaska (SlS-01). Their taxonomic identification was originally based on morphological and morphometric characteristics and subsequently confirmed by ITS-RLFP analysis according to the protocol described by Burgermeister et al. (2005). Prior to examination, all isolates were reared on Botrytis cinerea /malt agar (4.5%) at 25 ◦ C for ca 2 weeks. Propagated nematodes were col- lected by the Baermann funnel method and stored in 10 μ l H 2 O at − 20 ◦ C until use. Extraction of DNA was performed according to the method described by Iwahori et al. (1998), with mi- nor modifications to the composition of the lysis buffer: 100 mM Tris, pH 8.5, 100 mM NaCl, 50 mM EDTA, 1% SDS, 1% β -mercaptoethanol, 100 μ g ml − 1 proteinase K per 100 μ l buffer. Before incubation, the mixture was © Koninklijke Brill NV, Leiden, 2010 DOI:10.1163/138855409X12469543767319 Also available online - www.brill.nl/nemy 157
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- 2010
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100. Enhancing the multiplication of nucleopolyhedrovirus in vitro by manipulation of the pH
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Agata K. Jakubowska, Juan Ferré, and Salvador Herrero
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Baculoviridae ,viruses ,Green Fluorescent Proteins ,Cell Culture Techniques ,Heterologous ,Spodoptera ,Virus Replication ,Virus ,Cell Line ,Green fluorescent protein ,Transduction (genetics) ,Virology ,Animals ,Insect virus ,Expression vector ,biology ,fungi ,Hydrogen-Ion Concentration ,Virus Internalization ,biology.organism_classification ,Molecular biology ,Nucleopolyhedroviruses ,Culture Media ,Cell biology ,Microscopy, Fluorescence ,Cell culture - Abstract
Insect nucleopolyhedroviruses (NPVs) are studied widely as agents for biological control, as expression vectors for the production of heterologous proteins, and as transduction vectors for gene therapy applications. Most of these applications rely on the existence of cell lines that allow in vitro multiplication of the virus. The influence of pH in the medium culture on the multiplication of SeMNPV, HearSNPV and AcMNPV in different cell culture lines was investigated. The study showed a strong influence of the medium pH on the virus multiplication with the best results at pH 6.5, about half pH unit above the pH of insect culture media used most commonly. Additional experiments using a recombinant AcMNPV, expressing the green fluorescent protein, suggested that the enhanced virus multiplication at pH 6.5 is due mainly to a facilitated entry of the budded virions into the cells.
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- 2009
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