900 results on '"Philippe Fournier"'
Search Results
852. T-cell priming in bone marrow: the potential for long-lasting protective anti-tumor immunity
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Thorsten Ahlert, Philipp Beckhove, Volker Schirrmacher, Viktor Umansky, Philippe Fournier, and Markus Feuerer
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T cell ,T-Lymphocytes ,Priming (immunology) ,Bone Marrow Cells ,complex mixtures ,Models, Biological ,Antigen ,Neoplasms ,medicine ,Cytotoxic T cell ,Animals ,Humans ,Antigen-presenting cell ,Molecular Biology ,CD40 ,biology ,business.industry ,Dendritic Cells ,medicine.anatomical_structure ,Immunology ,Interleukin 12 ,biology.protein ,Molecular Medicine ,Bone marrow ,Immunotherapy ,business ,Immunologic Memory - Abstract
Circulating naive T cells do not recognize tumor-associated antigens (TAA) directly but need to interact with dendritic cells that have had the chance to process TAA for presentation to T cells. According to recent evidence, TAA from tumor cells circulating in the blood reach the spleen and bone marrow, where resident dendritic cells can process and cross-present them to prime T cells. This in turn leads to the generation of effector and memory cells, which can either destroy tumor cells or control them in a state of tumor dormancy. For therapeutic purposes, memory T cells can be boosted by the application of tumor vaccines that express TAA, together with danger signals. Immunization of cancer patients with such a tumor vaccine has resulted in improved survival in several Phase II studies. It is proposed that such immunization leads to long-lasting protective anti-tumor memory.
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- 2003
853. Two ways to induce innate immune responses in human PBMCs: Paracrine stimulation of IFN-α responses by viral protein or dsRNA
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Volker Schirrmacher, Philippe Fournier, and Jinyang Zeng
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Cancer Research ,animal structures ,viruses ,fungi ,RNA ,Transfection ,biochemical phenomena, metabolism, and nutrition ,Biology ,Semliki Forest virus ,biology.organism_classification ,Virology ,Molecular biology ,Virus ,RNA silencing ,chemistry.chemical_compound ,Oncology ,chemistry ,Transcription (biology) ,embryonic structures ,Replicon ,DNA - Abstract
In order to study mechanisms of induction of IFN-alpha by Newcastle disease virus (NDV), we used two replicon systems which are based respectively on DNA and RNA of the Semliki forest virus (SFV) and transfected these into baby hamster kidney cells (BHK) which do not produce interferon-alpha. Co-incubation of BHK cells which were transfected with the two vector systems, with human PBMCs, showed that production of IFN-alpha takes place by two different ways. When using the DNA-based SFV vector, only transfectants expressing cell surface HN molecules of NDV (and not the mock-transfected cells) elicited such a response via interaction of these HN molecules with viral receptors on PBMCs. In contrast, BHK cells transfected with RNA which had been in vitro transcribed from the RNA-based SFV vector without foreign gene as insert (mock-transfected) elicited a comparable IFN-alpha response. Transfer by transfection of poly(I:C), an analogue of double stranded RNA (dsRNA), into the BHK cells induced also by itself the production of IFN-alpha. Therefore induction of "danger signals" (as double-strand RNA replicative intermediates) might be responsible for this discrepancy observed in IFN-alpha induction in PBMCs between the two studied SFV vector systems based on transfection of DNA and on RNA. These observations highlight two ways of IFN-alpha induction which additively may explain the high interferonogenic capacity of NDV as virus: i) via cell-surface expressed HN after transfection of the DNA-based SFV replicon and ii) via transfection of self-amplifying RNA.
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- 2003
- Full Text
- View/download PDF
854. Two ways to induce innate immune responses in human PBMCs: paracrine stimulation of IFN-alpha responses by viral protein or dsRNA
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Philippe, Fournier, Jinyang, Zeng, and Volker, Schirrmacher
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Time Factors ,Transcription, Genetic ,Genetic Vectors ,Interferon-alpha ,DNA ,Flow Cytometry ,Kidney ,Transfection ,Models, Biological ,Semliki forest virus ,Coculture Techniques ,Cell Line ,Viral Proteins ,Genetic Techniques ,Cricetinae ,Leukocytes, Mononuclear ,Animals ,Humans ,RNA ,Plasmids ,RNA, Double-Stranded - Abstract
In order to study mechanisms of induction of IFN-alpha by Newcastle disease virus (NDV), we used two replicon systems which are based respectively on DNA and RNA of the Semliki forest virus (SFV) and transfected these into baby hamster kidney cells (BHK) which do not produce interferon-alpha. Co-incubation of BHK cells which were transfected with the two vector systems, with human PBMCs, showed that production of IFN-alpha takes place by two different ways. When using the DNA-based SFV vector, only transfectants expressing cell surface HN molecules of NDV (and not the mock-transfected cells) elicited such a response via interaction of these HN molecules with viral receptors on PBMCs. In contrast, BHK cells transfected with RNA which had been in vitro transcribed from the RNA-based SFV vector without foreign gene as insert (mock-transfected) elicited a comparable IFN-alpha response. Transfer by transfection of poly(I:C), an analogue of double stranded RNA (dsRNA), into the BHK cells induced also by itself the production of IFN-alpha. Therefore induction of "danger signals" (as double-strand RNA replicative intermediates) might be responsible for this discrepancy observed in IFN-alpha induction in PBMCs between the two studied SFV vector systems based on transfection of DNA and on RNA. These observations highlight two ways of IFN-alpha induction which additively may explain the high interferonogenic capacity of NDV as virus: i) via cell-surface expressed HN after transfection of the DNA-based SFV replicon and ii) via transfection of self-amplifying RNA.
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- 2003
855. Characterization and transcriptional profiles of three Spodoptera frugiperda genes encoding cysteine-rich peptides. A new class of defensin-like genes from lepidopteran insects?
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Alain Vey, Igor Landais, Janick Rocher, Kazuei Mita, Emmanuelle d'Alençon, Martine Bouton, Anne-Nathalie Volkoff, Philippe Fournier, Gérard Devauchelle, Enrique Quesada-Moraga, Biologie Intégrative et Virologie des Insectes [Univ. de Montpellier II] (BIVI), Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2), Unité mixte de recherche de pathologie comparée, Centre National de la Recherche Scientifique (CNRS)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA), Universidad de Córdoba [Cordoba], Laboratoire de Pathologie Comparée (LPC), Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS), National Institute of Agrobiological Sciences, and Université Montpellier 2 - Sciences et Techniques (UM2)-Institut National de la Recherche Agronomique (INRA)
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Hemocytes ,antimicrobial peptide ,Transcription, Genetic ,[SDV]Life Sciences [q-bio] ,Fat Body ,Gene Dosage ,Sf9 ,Genes, Insect ,lutte biologique ,cDNA library ,Defensins ,ADNC ,Transcription (biology) ,Promoter Regions, Genetic ,Defensin ,analyse phylogénique ,Phylogeny ,Genetics ,insect immunity ,bactérie ,0303 health sciences ,030302 biochemistry & molecular biology ,General Medicine ,Up-Regulation ,Insect Proteins ,Sequence motif ,DNA, Complementary ,Antimicrobial peptides ,Molecular Sequence Data ,Biology ,Spodoptera ,Cell Line ,03 medical and health sciences ,Complementary DNA ,Animals ,Amino Acid Sequence ,génomique des populations ,Gene ,030304 developmental biology ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,Base Sequence ,Sequence Homology, Amino Acid ,fungi ,DNA ,Sequence Analysis, DNA ,spodoptera frugiperda ,BIOLOGIE MOLECULAIRE ,Gene Expression Regulation ,Sequence Alignment ,Antimicrobial Cationic Peptides - Abstract
International audience; The present work describes sequence and transcription of three Spodoptera frugiperda genes encoding 6-cysteine-rich peptides. Sequence alignments indicate that the predicted peptides belong to the insect defensin family, although phylogenetic analyses suggest they form a cluster distinct from that of other neopteran insect defensins. The three genes were identified in a non-immume-challenged Sf9 cells cDNA (DNA complementary to RNA) library (Landais et al., Bioinformatics, in press) and were named spodoptericin, Sf-gallerimycin and Sf-cobatoxin. Spodoptericin is a novel defensin-like gene that appears to be weakly up-regulated following injection of bacteria and fungi. Interestingly, no sequence motif clearly homologous to cis regulatory element involved in the regulation of antimicrobial genes was found. An homologue of the spodoptericin gene was identified in the SilkBase Bombyx mori cDNA library. Sf-gallerimycin is related to the Galleria mellonella gallerimycin gene and is induced after immune challenge by injection of bacteria in the larval fat body as well as in hemocytes. In silico analysis of the sequence upstream from the cDNA reveals the presence of at least one motif homologous to a nuclear factor kappaB (NF-kappaB) binding site. Finally, Sf-cobatoxin is related to the G. mellonella cobatoxin-like gene. Despite high levels of constitutive expression compared to the two previous genes, transcription of Sf-cobatoxin is increased after immune, in particular, bacterial challenge. We therefore confirm that these three genes encode potential candidate molecules involved in S. frugiperda innate Immoral response.
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- 2003
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856. Junonia coenia densovirus-based vectors for stable transgene expression in Sf9 cells: influence of the densovirus sequences on genomic integration
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Corinne Royer, Hervé Bossin, Sylvie Gimenez, Pierre Cérutti, Max Bergoin, Philippe Fournier, Patrick Barry, Pierre Couble, and Laviron, Nathalie
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Concatemer ,Virus Integration ,viruses ,Immunology ,Genetic Vectors ,Molecular Sequence Data ,Gene Dosage ,Genome, Viral ,Biology ,Spodoptera ,Viral Nonstructural Proteins ,Transfection ,Microbiology ,Genome ,Green fluorescent protein ,chemistry.chemical_compound ,Plasmid ,Virology ,Animals ,Densovirus ,Transgenes ,Gene ,[SDV.BC] Life Sciences [q-bio]/Cellular Biology ,Genetics ,Base Sequence ,Gene Therapy ,Open reading frame ,chemistry ,Insect Science ,Plasmids - Abstract
The invertebrate parvovirus Junonia coenia densovirus (JcDNV) shares similarities with terminal hairpins and nonstructural (NS) protein activities of adeno-associated virus (AAV) despite their evolutionary divergence (B. Dumas, M. Jourdan, A. M. Pascaud, and M. Bergoin, Virology, 191:202-222, 1992, and C. Ding, M. Urabe, M. Bergoin, and R. M. Kotin, J. Virol. 76:338-345, 2002). We demonstrate here that persistent transgene expression in insect cells results from stable integration of transfected JcDNV-derived vectors into the host genome. To assess the integrative properties of JcDNV vectors, the green fluorescent protein (GFP) gfp marker gene was fused in frame into the major open reading frame (ORF1) of the viral sequence under the control of the P9 capsid protein promoter. In addition, the influence of the nonstructural proteins on the posttransfection maintenance of the vectors was examined by interruption of one or all three NS ORFs. Following transfection of Sf9 cells with each of the JcDNV constructs, clones showing persistent GFP expression were isolated. Structural analyses revealed that the majority of the JcDNV plasmid sequence was integrated into the genome of the fluorescent clones. Integration was observed whether or not NS proteins were expressed. However, the presence of NS genes in the constructs greatly influenced the number of integrated copies and their distribution in the host genome. Disruption of NS genes expression resulted in integration of head-to-tail concatemers at multiple sites within the genome. Further analyses demonstrated that the cis JcDNV 5′ inverted terminal repeat region was the primary site of recombination. Sequence analyses of integration junctions showed rearrangements of both flanking and internal sequences for most integrations. These findings demonstrate that JcDNV vectors integrate into insect cells in a manner similar to AAV plasmids in mammalian cells.
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- 2003
857. Dendritic cells pulsed with viral oncolysates potently stimulate autologous T cells from cancer patients
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J Koopmann, Volker Schirrmacher, C Fiola, Philippe Fournier, and L Bai
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Cancer Research ,Time Factors ,T-Lymphocytes ,Blotting, Western ,HSP27 Heat-Shock Proteins ,Newcastle disease virus ,Breast Neoplasms ,Enzyme-Linked Immunosorbent Assay ,Cell Separation ,Biology ,Immunoenzyme Techniques ,Immune system ,Antigen ,medicine ,Tumor Cells, Cultured ,Humans ,Phosphorylation ,Antigen-presenting cell ,Heat-Shock Proteins ,Interleukin-15 ,Oncogene ,ELISPOT ,Interferon-alpha ,Dendritic cell ,Dendritic Cells ,Flow Cytometry ,Virology ,Coculture Techniques ,Neoplasm Proteins ,Up-Regulation ,medicine.anatomical_structure ,Oncology ,Interleukin 15 ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Cancer research ,RNA, Viral ,Female ,Bone marrow ,Immunologic Memory ,Molecular Chaperones - Abstract
We demonstrated before that primary operated breast cancer patients contain in their bone marrow (BM) cancer reactive memory T cells (MTC) which have to be re-activated to become tumor infiltrating effector cells. The aim of this study was to optimize an ex vivo stimulation protocol for MTC based on autologous dendritic cells (DC). As source of tumor antigens we used lysates from unmodified tumor cells or from tumor cells infected with Newcastle Disease Virus (NDV) which contain IFN-alpha inducing viral dsRNA as one danger signal. DC from breast cancer patients were pulsed with lysates from the MCF-7 breast cancer line (Tu-L) or from NDV infected MCF-7 cells (TuN-L, viral oncolysates) and compared for stimulatory capacity in an ELISPOT response of autologous BM derived MTC. To analyze potential further danger signals derived from NDV infection, we employed MALDI mass spectrometry, Western blots, FACS cytometry and ELISA tests. DC pulsed with viral oncolysates showed increased expression of co-stimulatory molecules in comparison to Tu-L pulsed DC and induced significantly higher ELISPOT MTC responses. Supernatants from co-cultures of MTC and TuN-L pulsed DC contained increased titers of IFN-alpha and IL-15. NDV infection of tumor cells resulted in a number of differences in protein expression including a heat-shock protein (HSP27) which became phosphorylated. The results suggest that a DC preparation pulsed with viral oncolysate includes danger signals (e.g. dsRNA, cytokines, HSP molecules) and is superior for MTC stimulation to a DC preparation pulsed with lysate from non-infected tumor cells.
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- 2002
858. Induction of interferon-alpha and tumor necrosis factor-related apoptosis-inducing ligand in human blood mononuclear cells by hemagglutinin-neuraminidase but not F protein of Newcastle disease virus
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Jinyang Zeng, Philippe Fournier, and Volker Schirrmacher
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virus–cell interactions ,Oncolytic Newcastle Disease Virus ,animal structures ,viruses ,Genetic Vectors ,Newcastle disease virus ,Fluorescent Antibody Technique ,TRAIL ,DNA-Directed DNA Polymerase ,Biology ,avian RNA virus ,Semliki Forest virus ,Transfection ,Peripheral blood mononuclear cell ,Cell Line ,TNF-Related Apoptosis-Inducing Ligand ,Virology ,fusion protein ,Humans ,hemagglutinin-neuraminidase ,HN Protein ,Cells, Cultured ,IFN-α ,Recombination, Genetic ,Membrane Glycoproteins ,Tumor Necrosis Factor-alpha ,Interferon-alpha ,biology.organism_classification ,Molecular biology ,Semliki forest virus ,Cell culture ,PBMCs ,Leukocytes, Mononuclear ,Tumor necrosis factor alpha ,Apoptosis Regulatory Proteins ,Hemagglutinin-neuraminidase ,Viral Fusion Proteins ,SFV replicase - Abstract
To determine molecular viral components which can induce innate immune responses in human peripheral blood mononuclear cells (PBMC), we investigated the anti-neoplastic agent Newcastle disease virus (NDV) and its two spike proteins hemagglutinin-neuraminidase (HN) and fusion protein (F). NDV was an excellent inducer in PBMC of IFN-alpha production and capable of inducing upregulation of plasma membrane expression of tumor necrosis factor related apoptosis inducing ligand (TRAIL). Viral replication was not required for these responses because NDV inactivated for 5 min by UV was as good as live NDV. NDV-modified and paraformaldehyde-fixed BHK cells could also trigger IFN-alpha and TRAIL induction, indicating that contacts of responder cells with NDV-modified cell surfaces are sufficient to induce these activities in PBMC. Antibodies against HN but not F were able to block these responses. Finally we could show that HN but not F induced IFN-alpha and TRAIL in PBMC. This was possible through the use of respective gene transfectants generated with the help of Semliki Forest virus (SFV) replicase-based DNA recombinant expression systems. Upon contact with BHK cells expressing HN but not F at their cell surface, human PBMC produced IFN-alpha and some cells, including monocytes and T lymphocytes, upregulated cell surface TRAIL expression.
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- 2002
859. Stimulation of human natural interferon-alpha response via paramyxovirus hemagglutinin lectin-cell interaction
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Philippe Fournier, Volker Schirrmacher, and Jinyang Zeng
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Ultraviolet Rays ,Newcastle disease virus ,Alpha interferon ,Hemagglutinin (influenza) ,Receptors, Cell Surface ,Virus ,Respirovirus ,Cell Line ,chemistry.chemical_compound ,Cell–cell interaction ,Interferon ,Cricetinae ,Drug Discovery ,medicine ,Animals ,Humans ,Genetics (clinical) ,Innate immune system ,HN Protein ,biology ,Interferon-alpha ,Flow Cytometry ,Virology ,Molecular biology ,Immunity, Innate ,Sialic acid ,chemistry ,biology.protein ,Leukocytes, Mononuclear ,Mutagenesis, Site-Directed ,Sialic Acids ,Molecular Medicine ,Adsorption ,Neuraminidase ,medicine.drug - Abstract
A lectin-carbohydrate recognition event without enzymatic function is proposed as molecular basis for an important innate immune response to enveloped viruses. It involves the hemagglutinin-neuraminidase (HN) glycoprotein of Newcastle disease virus (NDV) and sialic acid expressing cellular receptors on human natural interferon (IFN) alpha producing cells. This conclusion is based on two types of experimental evidence: (a) strong UV irradiation of NDV, which destroyed the cell binding and hemadsorption (HAd) but not the neuraminidase (NA) activity of HN, also destroyed its IFN-alpha inducing activity; (b) DNA transfectants expressing HN mutant molecules with greatly reduced NA but not HAd activity induced IFN-alpha while transfectants expressing HN mutant molecules with greatly reduced NA and HAd activity were incapabable of inducing IFN-alpha in human peripheral blood mononuclear cells. The results clarify molecular mechanisms involved in pattern recognition during innate immune responses.
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- 2001
860. Only centromeres can supply the partition system required for ARS function in the yeast Yarrowia lipolytica
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Kohji Uchida, Leonora Poljak, Philippe Fournier, Laurence Vernis, Emmanuel Käs, Masayoshi Matsuoka, M. Chasles, Serge Casaregola, Claude Gaillardin, Microbiologie et Génétique Moléculaire (MGM), and Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G)-Centre National de la Recherche Scientifique (CNRS)
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Yeast artificial chromosome ,DNA Replication ,Autonomously replicating sequence ,Centromere ,Molecular Sequence Data ,Replication Origin ,Biology ,Regulatory Sequences, Nucleic Acid ,Origin of replication ,Plasmid maintenance ,03 medical and health sciences ,Transformation, Genetic ,Structural Biology ,Extrachromosomal DNA ,Chromosome Segregation ,Nuclear Matrix ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Cloning, Molecular ,DNA, Fungal ,Molecular Biology ,Dyad symmetry ,Conserved Sequence ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Sequence Deletion ,Genetics ,0303 health sciences ,Binding Sites ,Base Sequence ,030302 biochemistry & molecular biology ,Chromosome Breakage ,Mutagenesis, Insertional ,Saccharomycetales ,Chromosome breakage ,Chromosomes, Fungal ,Plasmids - Abstract
Autonomously replicating sequences (ARSs) in the yeast Yarrowia lipolytica require two components: an origin of replication (ORI) and centromere (CEN) DNA, both of which are necessary for extrachromosomal maintenance. To investigate this cooperation in more detail, we performed a screen for genomic sequences able to confer high frequency of transformation to a plasmid-borne ORI. Our results confirm a cooperation between ORI and CEN sequences to form an ARS, since all sequences identified in this screen displayed features of centromeric DNA and included the previously characterized CEN1-1, CEN3-1 and CEN5-1 fragments. Two new centromeric DNAs were identified as they are unique, map to different chromosomes (II and IV) and induce chromosome breakage after genomic integration. A third sequence, which is adjacent to, but distinct from the previously characterized CEN1-1 region was isolated from chromosome I. Although these CEN sequences do not share significant sequence similarities, they display a complex pattern of short repeats, including conserved blocks of 9 to 14 bp and regions of dyad symmetry. Consistent with their A+T-richness and strong negative roll angle, Y. lipolytica CEN-derived sequences, but not ORIs, were capable of binding isolated Drosophila nuclear scaffolds. However, a Drosophila scaffold attachment region that functions as an ARS in other yeasts was unable to confer autonomous replication to an ORI-containing plasmid. Deletion analysis of CEN1-1 showed that the sequences responsible for the induction of chromosome breakage could be eliminated without compromising extrachromosomal maintenance. We propose that, while Y. lipolytica CEN DNA is essential for plasmid maintenance, this function can be supplied by several sub-fragments which, together, form the active chromosomal centromere. This complex organization of Y. lipolytica centromeres is reminiscent of the regional structures described in the yeast Schizosaccharomyces pombe or in multicellular eukaryotes.
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- 2001
861. Characterization of the cDNA encoding the 90 kDa heat-shock protein in the Lepidoptera Bombyx mori and Spodoptera frugiperda
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Mylène Ogliastro, Kasuei Mita, Igor Landais, Sylvie Gimenez, Martine Duonor-Cerutti, Junko Nohata, Philippe Fournier, Gérard Devauchelle, Jean-Michel Pommet, Biologie Intégrative et Virologie des Insectes [Univ. de Montpellier II] (BIVI), Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2), and Université Montpellier 2 - Sciences et Techniques (UM2)-Institut National de la Recherche Agronomique (INRA)
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0106 biological sciences ,DNA, Complementary ,Sequence analysis ,viruses ,Molecular Sequence Data ,Gene Expression ,Sf9 ,Sequence alignment ,Spodoptera ,Biology ,01 natural sciences ,03 medical and health sciences ,ADNC ,Bombyx mori ,Sequence Homology, Nucleic Acid ,Complementary DNA ,Genetics ,Animals ,Amino Acid Sequence ,HSP90 Heat-Shock Proteins ,Peptide sequence ,Phylogeny ,030304 developmental biology ,0303 health sciences ,Expressed sequence tag ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,Base Sequence ,Sequence Homology, Amino Acid ,cDNA library ,fungi ,Sequence Analysis, DNA ,General Medicine ,Blotting, Northern ,Bombyx ,biology.organism_classification ,Molecular biology ,010602 entomology ,INSECTE ,RNA ,Sequence Alignment - Abstract
This report presents the first hsp90 complete cDNA sequences from two Lepidoptera. The Bombyx mori full sequence was reconstituted from 15 partial cDNA clones belonging to expressed sequence tag libraries obtained from different tissues or cultured cells, thus showing the ubiquitous expression of the hsp90 gene. The Spodoptera frugiperda cDNA was isolated as a full-length clone from a cDNA library established from the Sf9 cell line. Both cDNAs are highly homologous and display the classical amino acid (aa) stretches representing the HSP90 signature. They potentially encode a 716 aa (B. mori) and a 717 aa (S. frugiperda) protein, with a calculated molecular mass of 83 kDa similar to the Drosophila homologous protein. We show that, unlike the vertebrates, hsp90 is a unique gene in both S. frupiperda and B. mori genomes. Sequencing of the corresponding genomic region shows that, contrary to the dipteran homologous gene, the lepidopteran hsp90 gene does not display any intron. Phylogenetic analysis based on the two lepidopteran and 23 other HSP90 aa sequences displays a high consistency with known phylogeny at both high and low taxonomic levels. Transcriptional analysis performed in S. frugiperda shows that the induction of the hsp90 gene only occurs 14 degrees C above physiological growth conditions (42 degrees C).
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- 2001
862. Enhanced antigenicity of a four-contact-residue epitope of the measles virus hemagglutinin protein by phage display libraries: evidence of a helical structure in the putative active site
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Sabrina Deroo, Markus Herrmann, Karim C. El Kasmi, Johan Desmet, Dietmar Theisen, Philippe Fournier, Nicolaas H.C. Brons, and Claude P. Muller
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Antigenicity ,Phage display ,medicine.drug_class ,Immunology ,Hemagglutinins, Viral ,Peptide ,Monoclonal antibody ,Epitope ,Protein Structure, Secondary ,Measles virus ,Antigen-Antibody Reactions ,Epitopes ,Mice ,Peptide Library ,medicine ,Animals ,Bacteriophages ,Molecular Biology ,chemistry.chemical_classification ,Binding Sites ,Linear epitope ,biology ,Sequence Homology, Amino Acid ,Mimotope ,Molecular Mimicry ,biology.organism_classification ,Molecular biology ,chemistry - Abstract
Antigenicity and conformational propensities of synthetic peptides corresponding to the sequential epitope H236–255 of the measles virus hemagglutinin protein were investigated. This epitope corresponds to the neutralising and protective monoclonal antibody BH129 and includes Arg243, implicated in CD46-down-regulation and Arg253 that has been mapped to the putative enzymatic site. Fine mapping with truncation-, elongation-, Gly- and Ala-substitution analogues defined EL-QL as the critical residues of the minimal epitope S 244 ELSQL 249 . CD spectra of peptides, comparison with the 3D-structure of homologous sequences, and prediction algorithms suggested a helical structure with the contact residues E 245 L–QL 249 located on the protein surface. Mimotopes obtained with a 6-mer phage display library contained a consensus Pro (important for binding) instead of Ser 247 of the wild-type sequence (irrelevant for binding). The kink induced by Pro seemed to be essential to bring the 4 contact-residues in the mimotopes and in the corresponding short peptides together. CD analysis and prediction algorithms suggested that non-helical conformations of the phage insert and of the peptides may favourably mimic the antigenic helical turns of the wild-type sequence, resulting in an up to 135 times higher antigenicity of the mAb towards the mimotope peptides.
- Published
- 1998
863. New method of gain and noise factor determination of an erbium-doped fiber optical amplifier by electrical noise measurements
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Jean-Marie Peransin, Philippe Fournier, and Bernard Pierre Orsal
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Optical amplifier ,Noise temperature ,Optics ,Materials science ,Noise generator ,business.industry ,Physics::Optics ,Effective input noise temperature ,Y-factor ,Noise figure ,business ,Low-noise amplifier ,Noise floor - Abstract
This communication deals with optical noise measurements of an erbium-doped fiber amplifier with input signal. We are able to determine the net gain and the noise factor from only these low frequency electrical noise measurements and new simple relations. It is presented as alternative to optical analyzer measurements and it has no limitation for high input signals.© (1997) COPYRIGHT SPIE--The International Society for Optical Engineering. Downloading of the abstract is permitted for personal use only.
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- 1997
- Full Text
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864. Integrated optics Er:Yb amplifier with potassium ion-exchanged glass waveguides
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Mark Andrews, M. A. Fardad, Philippe Fournier, P. Meshkinfam, and S. Iraj Najafi
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Ytterbium ,Materials science ,business.industry ,Amplifier ,Optical engineering ,chemistry.chemical_element ,Noise figure ,Signal ,law.invention ,Phosphate glass ,Erbium ,Optics ,chemistry ,law ,business ,Waveguide - Abstract
Potassium ion exchange is used to make channel waveguides in an erbium-ytterbium co-doped phosphate glass. Gain characteristics of the fabricated waveguides are studied. The effect of pump and signal wavelengths, and the waveguide length on the gain in the waveguides are investigated. At the signal wavelength of 1.530 micrometers , 19.5 dB internal gain is achieved in a 6 mm long waveguide; the measured noise factor is 4 dB.© (1997) COPYRIGHT SPIE--The International Society for Optical Engineering. Downloading of the abstract is permitted for personal use only.
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- 1997
- Full Text
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865. An origin of replication and a centromere are both needed to establish a replicative plasmid in the yeast Yarrowia lipolytica
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Laurence Vernis, J A Huberman, M. Chasles, A Abbas, Christine Brun, Claude Gaillardin, Philippe Fournier, Laboratoire de génétique moléculaire et cellulaire, Institut National de la Recherche Agronomique (INRA), Roswell Park Cancer Institute [Buffalo], Microbiologie et Génétique Moléculaire (MGM), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G)-Centre National de la Recherche Scientifique (CNRS), Spinelli, Lionel, and Roswell Park Cancer Institute [Buffalo] (RPCI)
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DNA Replication ,[SDV]Life Sciences [q-bio] ,Centromere ,Genetic Vectors ,Molecular Sequence Data ,Replication Origin ,Biology ,[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Origin of replication ,03 medical and health sciences ,Plasmid ,Consensus Sequence ,Cloning, Molecular ,DNA, Fungal ,Molecular Biology ,Chromosomal Deletion ,ComputingMilieux_MISCELLANEOUS ,[INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM] ,030304 developmental biology ,Genetics ,0303 health sciences ,Base Sequence ,030302 biochemistry & molecular biology ,DNA replication ,Fungal genetics ,Chromosome ,Chromosome Mapping ,Yarrowia ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Cell Biology ,biology.organism_classification ,Molecular biology ,13. Climate action ,Saccharomycetales ,Chromosomes, Fungal ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,Plasmids ,Research Article - Abstract
Two DNA fragments displaying ARS activity on plasmids in the yeast Yarrowia lipolytica have previously been cloned and shown to harbor centromeric sequences (P. Fournier, A. Abbas, M. Chasles, B. Kudla, D. M. Ogrydziak, D. Yaver, J.-W. Xuan, A. Peito, A.-M. Ribet, C. Feynerol, F. He, and C. Gaillardin, Proc. Natl. Acad. Sci. USA 90:4912-4916, 1993; and P. Fournier, L. Guyaneux, M. Chasles, and C. Gaillardin, Yeast 7:25-36, 1991). We have used the integration properties of centromeric sequences to show that all Y. lipolytica ARS elements so far isolated are composed of both a replication origin and a centromere. The sequence and the distance between the origin and centromere do not seem to play a critical role, and many origins can function in association with one given centromere. A centromeric plasmid can therefore be used to clone putative chromosomal origins coming from several genomic locations, which confer the replicative property on the plasmid. The DNA sequences responsible for initiation in plasmids are short (several hundred base pairs) stretches which map close to or at replication initiation sites in the chromosome. Their chromosomal deletion abolishes initiation, but changing their chromosomal environment does not.
- Published
- 1997
866. Electrophoretic Karyotyping of Yeasts
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Martin Zimmermann and Philippe Fournier
- Subjects
0303 health sciences ,Strain (chemistry) ,Gel electrophoresis of nucleic acids ,biology ,030306 microbiology ,Electrophoretic karyotyping ,biology.organism_classification ,Yeast ,03 medical and health sciences ,Electrophoresis ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Schizosaccharomyces pombe ,Agarose ,DNA ,030304 developmental biology - Abstract
Electrophoretic karyotyping means the separation of intact chromosomal DNA according to its size on an agarose gel. Depending on the number and size of the chromosomes present in a strain, a specific banding pattern will be obtained. In order to reach this goal, two demands must be met. First, it is important to prepare the DNA without degradation by mechanical stress or by DNAses. Second, a method for the electrophoretic separation of the extremely large molecules must be developed. Conventional DNA electrophoresis is able to separate molecules of up to 50 kilobases. Yeast chromosomes range from several hundred to several thousand kilobases.
- Published
- 1996
- Full Text
- View/download PDF
867. Spontaneous emission factor and gain evaluation of optical amplifier noise measurements with no input signal
- Author
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Philippe Fournier, Bernard P. Orsal, Jean-Marie Peransin, and Elisabeth Lefranc
- Published
- 1995
- Full Text
- View/download PDF
868. Correlation of LNCR rasiRNAs Expression with Heterochromatin Formation during Development of the Holocentric Insect Spodoptera frugiperda
- Author
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Emmanuelle Permal, Sylvie Gimenez, Slavica Stanojcic, Emmanuelle d'Alençon, François Cousserans, Philippe Fournier, Hadi Quesneville, D'Alençon, Emmanuelle, Unité de Recherche Génomique Info (URGI), Institut National de la Recherche Agronomique (INRA), Diversité, Génomes et Interactions Microorganismes-Insectes, and Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)
- Subjects
[SDV]Life Sciences [q-bio] ,lcsh:Medicine ,Plant Science ,genomic ,Histones ,0302 clinical medicine ,Heterochromatin ,Molecular Cell Biology ,Cluster Analysis ,RNA, Small Interfering ,lcsh:Science ,Genetics ,Plant Pests ,0303 health sciences ,Genome ,Multidisciplinary ,Gene Expression Regulation, Developmental ,Genomics ,Chromatin ,Drosophila melanogaster ,Holocentric ,Research Article ,Transposable element ,RNA-induced silencing complex ,Molecular Sequence Data ,heterochromatin ,holocentric insect ,spodoptera frugiperda ,Spodoptera ,Biology ,03 medical and health sciences ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Animals ,RNA-Induced Silencing Complex ,RasiRNA ,030304 developmental biology ,microorganisme ,écologie microbienne ,Base Sequence ,lcsh:R ,Computational Biology ,RNA ,insecta ,Sequence Analysis, DNA ,Plant Pathology ,hétérochromatine ,Mutation ,DNA Transposable Elements ,lcsh:Q ,Chromatin immunoprecipitation ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Repeat-associated small interfering RNAs (rasiRNAs) are derived from various genomic repetitive elements and ensure genomic stability by silencing endogenous transposable elements. Here we describe a novel subset of 46 rasiRNAs named LNCR rasiRNAs due to their homology with one long non-coding RNA (LNCR) of Spodoptera frugiperda. LNCR operates as the intermediate of an unclassified transposable element (TE-LNCR). TE-LNCR is a very invasive transposable element, present in high copy numbers in the S. frugiperda genome. LNCR rasiRNAs are single-stranded RNAs without a prominent nucleotide motif, which are organized in two distinct, strand-specific clusters. The expression of LNCR and LNCR rasiRNAs is developmentally regulated. Formation of heterochromatin in the genomic region where three copies of the TE-LNCR are embedded was followed by chromatin immunoprecipitation (ChIP) and we observed this chromatin undergo dynamic changes during development. In summary, increased LNCR expression in certain developmental stages is followed by the appearance of a variety of LNCR rasiRNAs which appears to correlate with subsequent accumulation of a heterochromatic histone mark and silencing of the genomic region with TE-LNCR. These results support the notion that a repeat-associated small interfering RNA pathway is linked to heterochromatin formation and/or maintenance during development to establish repression of the TE-LNCR transposable element. This study provides insights into the rasiRNA silencing pathway and its role in the formation of fluctuating heterochromatin during the development of one holocentric organism.
- Published
- 2011
- Full Text
- View/download PDF
869. Cloning of the mating-type gene MATA of the yeast Yarrowia lipolytica
- Author
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M. Chasles, Claude Gaillardin, Philippe Fournier, Herbert Weber, Cornelia Kurischko, Microbiologie et Génétique Moléculaire (MGM), and Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Mating type ,[SDV]Life Sciences [q-bio] ,Genes, Fungal ,Restriction Mapping ,Locus (genetics) ,03 medical and health sciences ,Plasmid ,Gene bank ,Genetics ,Deletion mapping ,Cloning, Molecular ,Molecular Biology ,Gene ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,Models, Genetic ,biology ,030306 microbiology ,fungi ,Yarrowia ,Spores, Fungal ,BIOLOGIE MOLECULAIRE ,Genes, Mating Type, Fungal ,biology.organism_classification ,Phenotype ,Mating of yeast ,Conjugation, Genetic ,Saccharomycetales ,CLONAGE DE GENE ,Chromosome Deletion ,Chromosomes, Fungal ,Plasmids - Abstract
The mating type gene MATA of the dimorphic yeast Yarrowia lipolytica was cloned. The strategy used was based on the presumed function of this gene in the induction of sporulation. A diploid strain homozygous for the mating type B was transformed with an integrative gene bank from an A wild-type strain. A sporulating transformant was isolated, which contained a plasmid with an 11.6 kb insert. This sequence was rescued from the chromosomal DNA of the transformant and deletion mapping was performed to localize the MAT insert. The MAT gene conferred both sporulating and non-mating phenotypes on a B/B diploid. A LEU2 sequence targeted to this locus segregated like a mating type-linked gene. The A strain did not contain silent copies of the MAT gene.
- Published
- 1992
870. Isolated dentinogenesis imperfecta and dentin dysplasia: revision of the classification.
- Author
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de La Dure-Molla, Muriel, Philippe Fournier, Benjamin, and Berdal, Ariane
- Subjects
- *
DENTINOGENESIS imperfecta , *DENTINOGENESIS , *DENTIN , *DYSPLASIA , *TOOTH demineralization , *EXTRACELLULAR matrix - Abstract
Dentinogenesis imperfecta is an autosomal dominant disease characterized by severe hypomineralization of dentin and altered dentin structure. Dentin extra cellular matrix is composed of 90% of collagen type I and 10% of non-collagenous proteins among which dentin sialoprotein (DSP), dentin glycoprotein (DGP) and dentin phosphoprotein (DPP) are crucial in dentinogenesis. These proteins are encoded by a single gene: dentin sialophosphoprotein (DSPP) and undergo several post-translational modifications such as glycosylation and phosphorylation to contribute and to control mineralization. Human mutations of this DSPP gene are responsible for three isolated dentinal diseases classified by Shield in 1973: type II and III dentinogenesis imperfecta and type II dentin dysplasia. Shield classification was based on clinical phenotypes observed in patient. Genetics results show now that these three diseases are a severity variation of the same pathology. So this review aims to revise and to propose a new classification of the isolated forms of DI to simplify diagnosis for practitioners. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
871. Overlapping reading frames at the LYS5 locus in the yeast Yarrowia lipolytica
- Author
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Philippe Fournier, Nathalie Declerck, M. Chasles, Claude Gaillardin, Jian-Wu Xuan, ProdInra, Migration, Institut francilien recherche, innovation et société (IFRIS), Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS), and Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV]Life Sciences [q-bio] ,viruses ,Saccharomyces cerevisiae ,Mutant ,Genes, Fungal ,Molecular Sequence Data ,Restriction Mapping ,Reading frame ,Locus (genetics) ,macromolecular substances ,03 medical and health sciences ,Amino Acid Sequence ,Cloning, Molecular ,Promoter Regions, Genetic ,Gene ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Genetics ,0303 health sciences ,Oxidoreductases Acting on CH-NH Group Donors ,biology ,Base Sequence ,030306 microbiology ,030302 biochemistry & molecular biology ,Yarrowia ,Cell Biology ,biology.organism_classification ,Molecular biology ,Stop codon ,[SDV] Life Sciences [q-bio] ,Open reading frame ,Protein Biosynthesis ,Mutation ,Saccharomycetales ,Saccharopine Dehydrogenases ,Oligonucleotide Probes ,Plasmids ,Research Article - Abstract
Mutants affected at the LYS5 locus of Yarrowia lipolytica lack detectable dehydrogenase (SDH) activity. The LYS5 gene has previously been cloned, and we present here the sequence of the 2.5-kilobase-pair (kb) DNA fragment complementing the lys5 mutation. Two large antiparallel open reading frames (ORF1 and ORF2) were observed, flanked by potential transcription signals. Both ORFs appear to be transcribed, but several lines of evidence suggest that only ORF2 is translated and encodes SDH. (i) The global amino acid compositions of Saccharomyces cerevisiae SDH and of the putative ORF2 product are similar and that of ORF1 is dissimilar. (ii) An in-frame translational fusion of ORF2 with the Escherichia coli lacZ gene was introduced into yeast cells and resulted in a beta-galactosidase activity regulated similarly to SDH; no beta-galactosidase activity was obtained with an in-frame fusion of ORF1 with lacZ. (iii) The introduction of a stop codon at the beginning of ORF2 prevented SDH expression in yeast cells, whereas no phenotypic effect was observed when ORF1 translation was blocked.
- Published
- 1990
872. Speech recognition apparatus and method
- Author
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Bernd Burchard, Jean-Philippe Fournier, Thomas Volk, and Tobias Schneider
- Subjects
Audio mining ,Dynamic time warping ,Voice activity detection ,Acoustics and Ultrasonics ,Computer science ,Speech recognition ,Speech coding ,Word error rate ,Acoustic model ,Speaker recognition ,Speech processing ,computer.software_genre ,Linear predictive coding ,Voice analysis ,Arts and Humanities (miscellaneous) ,Audio signal processing ,computer - Abstract
To control an arbitrary system by speech recognition, it is proposed that speech recognition be implemented in the form of a predefined sequence of states, such that, upon recognition of an appropriate voice command, the system changes from one state to another state, and this change takes place in dependence on at least one speech recognition parameter. The speech recognition parameters can influence, for example, the so-called “false acceptance rate” (FAR) and/or the “false rejection rate” (FRR), which thus are set to state-specific values for the individual states, in order to achieve improved recognition accuracy.
- Published
- 2005
- Full Text
- View/download PDF
873. SPMF: A Java Open-Source Pattern Mining Library.
- Author
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Philippe-Fournier-Viger, Gomariz, Antonio, Gueniche, Ted, Soltani, Azadeh, Cheng-Wei Wu, and Tseng, Vincent S.
- Subjects
- *
JAVA programming language , *OPEN source software , *DATA mining , *DATA libraries , *DATABASES - Abstract
We present SPMF, an open-source data mining library offering implementations of more than 55 data mining algorithms. SPMF is a cross-platform library implemented in Java, specialized for discovering patterns in transaction and sequence databases such as frequent itemsets, association rules and sequential patterns. The source code can be integrated in other Java programs. Moreover, SPMF offers a command line interface and a simple graphical interface for quick testing. The source code is available under the GNU General Public License, version 3. The website of the project offers several resources such as docu- mentation with examples of how to run each algorithm, a developer's guide, performance comparisons of algorithms, data sets, an active forum, a FAQ and a mailing list. [ABSTRACT FROM AUTHOR]
- Published
- 2014
874. Heterogeneity in the ribosomal RNA genes of the yeast Yarrowia lipolytica; cloning and analysis of two size classes of repeats
- Author
-
Adrie Ykema, Jacobus Klootwijk, Harm van Heerikhuizen, Philippe Fournier, Christine Ballas, Claude Gaillardin, Institut francilien recherche, innovation et société (IFRIS), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS), and Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Sequence analysis ,Genetic Linkage ,Genes, Fungal ,Molecular cloning ,DNA, Ribosomal ,03 medical and health sciences ,5S ribosomal RNA ,Yeasts ,Genetics ,Cloning, Molecular ,Repeated sequence ,DNA, Fungal ,Ribosomal DNA ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Southern blot ,Repetitive Sequences, Nucleic Acid ,0303 health sciences ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,biology ,Base Sequence ,030306 microbiology ,Chromosome Mapping ,Yarrowia ,General Medicine ,Ribosomal RNA ,BIOLOGIE MOLECULAIRE ,biology.organism_classification ,Molecular Weight ,RNA, Ribosomal - Abstract
Southern blotting of DNA from the ascomycetous yeast Yarrowia lipolytica revealed two major size classes of DNA units coding for rRNAs, which differ in length by about 1000 bp. We have cloned an rDNA unit of each size class. R-looping experiments revealed that the rRNA genes of both units are uninterrupted; subsequent heteroduplex analysis showed that the size difference between both units is located within the nontranscribed spacer. Sequence analysis revealed that a major part of these spacers consists of a complex pattern of repetitions in periodicities of up to about 150 bp and that the difference between both rDNA units are located mainly in this repetitive region. Apart from different lengths of the repetitive regions, both rDNA units also reveal extended microheterogeneity within their homologous parts. Furthermore, no gene for 5S rRNA was observed in the spacer region. Therefore, the organization of the spacer of Yarrowia rDNA is clearly different from that of Saccharomyces cerevisiae
- Published
- 1985
875. Cloning of the LYS5 gene encoding saccharopine dehydrogenase from the yeast Yarrowia lipolytica by target integration
- Author
-
Philippe Fournier, Jian-Wu Xuan, Claude Gaillardin, Institut francilien recherche, innovation et société (IFRIS), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS), and Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Genetics ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,biology ,fungi ,Saccharopine dehydrogenase ,Yarrowia ,Locus (genetics) ,General Medicine ,Molecular cloning ,biology.organism_classification ,Molecular biology ,Subcloning ,Deletion mapping ,BANQUE DE GENES ,Hybrid plasmid ,Gene ,ComputingMilieux_MISCELLANEOUS - Abstract
A Yarrowia lipolytica yeast gene bank has been constructed in E. coli in an integrative plasmid vector containing the homologous LEU2 gene, and used to transform a leu2 lys5 yeast strain. The LYS5 gene encoding saccharopine dehydrogenase (SDH) has been rescued in E. coli from the chromosome of prototrophic transformants, in which the hybrid plasmid had integrated at the leu2 locus. Evidence that the rescued clone contains the LYS5 gene comes from complementation tests, genetic crosses, and SDH assay. Further characterization of the gene has been achieved by deletion mapping and subcloning, and by demonstrating the presence of transcripts hybridizing to this sequence.
- Published
- 1988
876. High frequency of yeast transformation by plasmids carrying part or entire 2-micron yeast plasmid
- Author
-
Philippe Fournier, Henri Heslot, Michel Aigle, Michel Guerineau, Hughes Blanc, and Claude Gerbaud
- Subjects
Plasmid preparation ,DNA, Bacterial ,Chimera ,DNA, Recombinant ,General Medicine ,DNA ,Saccharomyces cerevisiae ,Biology ,Molecular biology ,Yeast ,Transformation (genetics) ,Plasmid ,Transformation, Genetic ,Genetics ,Escherichia coli ,Genomic library ,URA3 ,Uracil ,T-DNA Binary system ,Transformation efficiency ,Plasmids - Abstract
By using two chimeric plasmids containing yeast ura3 gene and 2-micron yeast DNA linked to the bacterial plasmid pCR1, yeast transformation of a high frequency has been achieved. The first plasmid is such that the 2-micron DNA part, in which the ura3 gene is incorporated, can be removed in one step and thus the 2-micron-ura3 sequence can be considered as a "transposable" block. In contrast, the second one bears the entire 2-micron plasmid and the ura3 gene is inserted in the bacterial plasmid part. As shown through hybridization experiments and genetic studies, the ura3 gene was maintained as a cytoplasmic element. Plasmids recovered from the yeast transformants were used to transform Escherichia coli. Their analysis by EcoRI showed that in many cases the vector had recombined with the endogenous 2-micron DNA of the recipient strain. The specific activity of orotidine 5'-monophosphate decarboxylase (coded by ura3) in yeast transformants was 10- to 30-fold higher than in the wild type.
- Published
- 1979
877. Heterogeneity in the ribosomal family of the yeast Yarrowia lipolytica: genomic organization and segregation studies
- Author
-
Jacobus Klootwijk, Marie-Annick Persuy, Philippe Fournier, Claude Gaillardin, Harm van Heerikhuizen, Institut francilien recherche, innovation et société (IFRIS), Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS), and Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-OST-Université Paris-Est Marne-la-Vallée (UPEM)-ESIEE Paris-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Transcription, Genetic ,Genes, Fungal ,DNA, Ribosomal ,Restriction fragment ,03 medical and health sciences ,Restriction map ,Species Specificity ,Yeasts ,Genetics ,Gene family ,Cloning, Molecular ,Repeated sequence ,Ribosomal DNA ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Genomic organization ,Repetitive Sequences, Nucleic Acid ,Recombination, Genetic ,0303 health sciences ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,biology ,030306 microbiology ,Chromosome Mapping ,Yarrowia ,General Medicine ,DNA Restriction Enzymes ,biology.organism_classification ,genomic DNA ,Meiosis ,Gene Expression Regulation ,RNA, Ribosomal ,biology.protein - Abstract
The cloned r-DNA units of Yarrowia lipolytica [Van Heerikhuizen et al., 39 (1985) 213-222] and their restriction fragments have been used to probe blots of genomic DNA of this yeast. Wild-type and laboratory strains were shown to contain two-to-five types of repeated units, each strain displaying a specific pattern. By comparing their restriction patterns, we could localize the differences between units within their spacer region. Tetrad analysis strongly suggested a clustered organization of each type of repeat as well as the occurrence of meiotic exchanges within the r-DNA family. Chromosome loss was induced by benomyl and allowed to map several r-DNA clusters on the same chromosome. All those results indicate that the Y. lipolytica r-DNA gene family is quite different from other yeasts.
- Published
- 1986
878. Employing the neural networks to parametrically assess the quality of a voice call
- Author
-
Voznak, M., Rozhon, J., Mikulec, M., Rezac, F., Komosny, D., Lin, J. C. -W, and Philippe Fournier-Viger
- Subjects
Voice activity detection ,Voice over IP ,Time delay neural network ,Computer science ,business.industry ,Speech recognition ,Speech coding ,020206 networking & telecommunications ,02 engineering and technology ,PSQM ,Modular neural network ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Telephony ,business ,PESQ - Abstract
The paper deals with the modelling of the network effects on the quality of speech in the Voice over IP networks. The main purpose of the ideas presented here is to achieve highprecision estimation of the speech quality in the environment in which the classical approaches of speech quality determination fail. To achieve such a high precision a modular neural network model is used to map the effects of a packet loss on the speech quality based on the PESQ (Perceptual Evaluation of the Speech Quality) reference. To incorporate the temporal effects, the Emodel is partially utilized as well. This way a universal tool capable of harnessing the information about the speech quality for stress testing and monitoring of the local infrastructure has been developed enabling the telephony infrastructure administrators to evaluate the performance and stability of the systems in their hands. Moreover, a high-performance simulation environment has been developed.
879. Football Pass Prediction using Player Locations
- Author
-
Philippe Fournier-Viger, Jerry Chun-Wei Lin, and Tianbiao Liu
- Subjects
business.industry ,Computer science ,ComputingMilieux_PERSONALCOMPUTING ,Artificial intelligence ,Football ,Sports analytics ,business ,Machine learning ,computer.software_genre ,computer - Abstract
In many sports, predicting the passing behavior of players is desirable at it provides insights that can help to understand and improve player performance. In this paper, we describe a novel model for football pass prediction, developed to participate in the Prediction Challenge of the 5th Workshop on Machine Learning and Data Mining for Sports Analytics, collocated with ECML PAKDD 2018. The model called Football Pass Predictor (FPP) considers various aspects to generate predictions such as the distance between players, the proximity of players from the opposite team, and the direction of each pass. Experimental results shows that the model can achieve a prediction accuracy of 33.8%, and more than 50% if two guesses are allowed. This is considerably more than the random predictor, which obtains 8.3%.
880. CMRULES: An efficient algorithm for mining sequential rules common to several sequences
- Author
-
Philippe Fournier-Viger, Faghihi, U., Nkambou, R., Nguifo, E. M., Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes (LIMOS), Ecole Nationale Supérieure des Mines de St Etienne-Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), Ecole Nationale Supérieure des Mines de St Etienne (ENSM ST-ETIENNE)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), and DOREAU, Bastien
- Subjects
[INFO.INFO-AI] Computer Science [cs]/Artificial Intelligence [cs.AI] ,[INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB] ,[INFO.INFO-LG]Computer Science [cs]/Machine Learning [cs.LG] ,[INFO.INFO-DB] Computer Science [cs]/Databases [cs.DB] ,[INFO.INFO-LG] Computer Science [cs]/Machine Learning [cs.LG] ,[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]
881. Exploiting sequential patterns found in users' solutions and virtual tutor behavior to improve assistance in ITS
- Author
-
Philippe Fournier-Viger, Faghihi, U., Nkamboun, R., Nguifo, E. M., Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes (LIMOS), Ecole Nationale Supérieure des Mines de St Etienne-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), DOREAU, Bastien, and Ecole Nationale Supérieure des Mines de St Etienne (ENSM ST-ETIENNE)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[INFO.INFO-AI] Computer Science [cs]/Artificial Intelligence [cs.AI] ,[INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB] ,[INFO.INFO-LG]Computer Science [cs]/Machine Learning [cs.LG] ,[INFO.INFO-DB] Computer Science [cs]/Databases [cs.DB] ,[INFO.INFO-LG] Computer Science [cs]/Machine Learning [cs.LG] ,[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]
882. A framework for evaluating semantic knowledge in problem-solving-based intelligent tutoring systems
- Author
-
Philippe Fournier-Viger, Nkambou, R., and Mayers, A.
883. An adaptive questionnaire for automatic identification of learning styles
- Author
-
Chadia Moghrabi, Adnen Barhoumi, Philippe Fournier-Viger, Espérance Mwamikazi, and Robert Baudouin
- Subjects
Artificial neural network ,Association rule learning ,Computer science ,business.industry ,Word error rate ,Machine learning ,computer.software_genre ,Style (sociolinguistics) ,Learning styles ,Identification (information) ,Myers briggs ,Mathematics education ,Artificial intelligence ,business ,computer - Abstract
Learning styles refer to how a person acquires and processes information. Identifying the learning styles of students is important because it allows more personnalized teaching. The most popular method for learning style recognition is through the use of a questionnaire. Although such an approach can correctly identify the learning style of a student, it suffers from three important limitations: 1 filling a questionnaire is time-consuming since questionnaires usually contain numerous questions, 2 learners may lack time and motivation to fill long questionnaires and 3 a specialist needs to analyse the answers. In this paper, we address these limitations by presenting an adaptative electronic questionnaire that dynamically selects subsequent questions based on previous answers, thus reducing the number of questions. Experimental results with 1,931 questionnaires for the Myers Briggs Type Indicators show that our approach Q-SELECT considerably reduces the number of questions asked by a median of 30 % while predicting learning styles with a low error rate.
884. A data mining framework for the acquisition of procedural knowledge in intelligent tutoring systems
- Author
-
Philippe Fournier-Viger, Nkambou, R., and Nguifo, E. M.
885. Area sampling and information systems applied to land-cover and land-use. Case study: post-communist Romania
- Author
-
Philippe Fournier, Simona Niculescu, Alexandru Badea, Littoral, Environnement, Télédétection, Géomatique (LETG - Brest), Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN)-Université de Caen Normandie (UNICAEN), Université de Nantes (UN)-Université de Nantes (UN), and Niculescu, Simona
- Subjects
QA71-90 ,[SHS.GEO] Humanities and Social Sciences/Geography ,Land cover ,spatial agricultural statistics ,Instruments and machines ,images satellites à haute résolution spatiale ,suivi et gestion du territoire ,Information géographique ,Applied optics. Photonics ,Electrical and Electronic Engineering ,Cellular telephone services industry. Wireless telephone industry ,Geographical information ,Land user ,Post communist ,Forestry ,[SHS.GEO]Humanities and Social Sciences/Geography ,15. Life on land ,land monitoring and management ,Computer Science Applications ,TA1501-1820 ,Area sampling ,Geography ,statistiques spatiales agricoles ,HE9713-9715 ,high spatial resolution satellite images ,Cartography - Abstract
The last two decades substantial improvements in the production of agricultural statistics have occurred in a context where the demand for geographical information is constantly increasing and becoming more diversified at both the national and international levels. This paper presents some methodological aspects (conventional area-based methods) related to the production of geographical information via agricultural statistics using fine-scale topographical maps and high spatial resolution satellite images as sampling frames for the application of agricultural surveys in post-communist Romania. The paper describes the application of the MARS project to Romania based on examples from the Falticeni Plateau, North-East of the country, and focusing on the adaptation of the methodology and data collection to specific land and environment conditions in a Central and Eastern European country., Les deux dernières décennies ont été marquées par une amélioration sensible de la production de statistiques agricoles en tenant compte du fait que la demande en information géographique est toujours croissante et de plus en plus diversifiée tant à l'échelle nationale qu'internationale. Cet article présente quelques aspects méthodologiques (les méthodes aréolaires conventionnelles) de production d'information géographique à travers les statistiques spatiales agricoles en utilisant les cartes topographiques à échelle fine et les images satellites à haute résolution spatiale comme base de sondage pour l'application des enquêtes agricoles en Roumanie post-communiste. L'article présente l'application du projet MARS en Roumanie en s'appuyant sur des exemples du Plateau de Falticeni, au nord-est du pays, et en focalisant sur l'adaptation de la méthodologie et de la collecte des données à une situation foncière et environnementale spécifique à un pays de l'Europe Centrale et de l'Est.
886. Data Science and Machine Learning - 21st Australasian Conference, AusDM 2023, Auckland, New Zealand, December 11-13, 2023, Proceedings
- Author
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Diana Benavides-Prado, Sarah M. Erfani, Philippe Fournier-Viger, Yee Ling Boo, and Yun Sing Koh
- Published
- 2024
- Full Text
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887. Model and Data Engineering: 11th International Conference, MEDI 2022, Cairo, Egypt, November 21-24, 2022, Proceedings
- Author
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Philippe Fournier-Viger, Ahmed Hassan Yousef, and Ladjel Bellatreche
- Published
- 2023
- Full Text
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888. Efficient isolation of human gingival stem cells in a new serum-free medium supplemented with platelet lysate and growth hormone for osteogenic differentiation enhancement
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Ihsène Taihi, Caroline Pilon, José Cohen, Ariane Berdal, Bruno Gogly, Ali Nassif, and Benjamin Philippe Fournier
- Subjects
Mesenchymal stem cell ,Gingiva ,Neural crest ,Culture medium ,Serum free ,Growth hormone ,Medicine (General) ,R5-920 ,Biochemistry ,QD415-436 - Abstract
Abstract Background The use of distant autografts to restore maxillary bone defects is clinically challenging and has unpredictable outcomes. This variation may be explained by the embryonic origin of long bone donor sites, which are derived from mesoderm, whereas maxillary bones derive from neural crest. Gingival stem cells share the same embryonic origin as maxillary bones. Their stemness potential and ease of access have been repeatedly shown. One limitation in human cell therapy is the use of foetal calf serum during cell isolation and culture. To overcome this problem, a new serum-free medium enriched with an alternative to foetal calf serum, i.e., platelet lysate, needs to be adapted to clinical grade protocols. Methods Different serum-free media enriched with platelet lysate at various concentrations and supplemented with different growth factors were developed and compared to media containing foetal calf serum. Phenotypic markers, spontaneous DNA damage, and stem cell properties of gingival stem cells isolated in platelet lysate or in foetal calf serum were also compared, as were the immunomodulatory properties of the cells by co-culturing them with activated peripheral blood monocellular cells. T-cell proliferation and phenotype were also assessed by flow cytometry using cell proliferation dye and specific surface markers. Data were analysed with t-test for two-group comparisons, one-way ANOVA for multigroup comparisons and two-way ANOVA for repeated measures and multigroup comparisons. Results Serum-free medium enriched with 10% platelet lysate and growth hormone yielded the highest expansion rate. Gingival stem cell isolation and thawing under these conditions were successful, and no significant DNA lesions were detected. Phenotypic markers of mesenchymal stem cells and differentiation capacities were conserved. Gingival stem cells isolated in this new serum-free medium showed higher osteogenic differentiation potential compared to cells isolated in foetal calf serum. The proportion of regulatory T cells obtained by co-culturing gingival stem cells with activated peripheral blood monocellular cells was similar between the two types of media. Conclusions This new serum-free medium is well suited for gingival stem cell isolation and proliferation, enhances osteogenic capacity and maintains immunomodulatory properties. It may allow the use of gingival stem cells in human cell therapy for bone regeneration in accordance with good manufacturing practice guidelines.
- Published
- 2022
- Full Text
- View/download PDF
889. Advances in Model and Data Engineering in the Digitalization Era - MEDI 2022 Short Papers and DETECT 2022 Workshop Papers, Cairo, Egypt, November 21-24, 2022, Proceedings
- Author
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Philippe Fournier-Viger, Ahmed Hassan Yousef, Ladjel Bellatreche, Ahmed Awad 0001, Abderrahim Ait Wakrime, Yassine Ouhammou, and Idir Aït-Sadoune
- Published
- 2022
- Full Text
- View/download PDF
890. Advances and Trends in Artificial Intelligence. Theory and Practices in Artificial Intelligence - 35th International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems, IEA/AIE 2022, Kitakyushu, Japan, July 19-22, 2022, Proceedings
- Author
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Hamido Fujita, Philippe Fournier-Viger, Moonis Ali, and Yinglin Wang
- Published
- 2022
- Full Text
- View/download PDF
891. Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2021, Virtual Event, September 13-17, 2021, Proceedings, Part I
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Michael Kamp, Irena Koprinska, Adrien Bibal, Tassadit Bouadi, Benoît Frénay, Luis Galárraga, José Oramas, Linara Adilova, Yamuna Krishnamurthy, Bo Kang, Christine Largeron, Jefrey Lijffijt, Tiphaine Viard, Pascal Welke, Massimiliano Ruocco, Erlend Aune, Claudio Gallicchio, Gregor Schiele, Franz Pernkopf, Michaela Blott, Holger Fröning, Günther Schindler, Riccardo Guidotti, Anna Monreale, Salvatore Rinzivillo, Przemyslaw Biecek, Eirini Ntoutsi, Mykola Pechenizkiy, Bodo Rosenhahn, Christopher L. Buckley, Daniela Cialfi, Pablo Lanillos, Maxwell Ramstead, Tim Verbelen, Pedro M. Ferreira 0001, Giuseppina Andresini, Donato Malerba, Ibéria Medeiros, Philippe Fournier-Viger, M. Saqib Nawaz, Sebastián Ventura, Meng Sun 0002, Min Zhou 0006, Valerio Bitetta, Ilaria Bordino, Andrea Ferretti, Francesco Gullo, Giovanni Ponti, Lorenzo Severini, Rita P. Ribeiro, João Gama 0001, Ricard Gavaldà, Lee A. D. Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Damian Roqueiro, Diego Saldana Miranda, Konstantinos Sechidis, and Guilherme Graça
- Published
- 2021
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892. Trends in Artificial Intelligence Theory and Applications. Artificial Intelligence Practices - 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems, IEA/AIE 2020, Kitakyushu, Japan, September 22-25, 2020, Proceedings
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Hamido Fujita, Philippe Fournier-Viger, Moonis Ali, and Jun Sasaki
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- 2020
- Full Text
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893. Big Data Analytics - 7th International Conference, BDA 2019, Ahmedabad, India, December 17-20, 2019, Proceedings
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Sanjay Madria, Philippe Fournier-Viger, Sanjay Chaudhary, and P. Krishna Reddy
- Published
- 2019
- Full Text
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894. Amelogenesis imperfecta: therapeutic strategy from primary to permanent dentition across case reports
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Steve Toupenay, Benjamin Philippe Fournier, Marie-Cécile Manière, Chantal Ifi-Naulin, Ariane Berdal, and Muriel de La Dure– Molla
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Amelogenesis imperfecta ,Dental care ,Operative dentistry ,Paediatric dentistry ,Dentistry ,RK1-715 - Abstract
Abstract Background Hereditary enamel defect diseases are regrouped under the name “Amelogenesis Imperfecta” (AIH). Both dentitions are affected. Clinical expression is heterogeneous and varies between patients. Mutations responsible for this multigene disease may alter various genes and the inheritance can be either autosomal dominant or recessive, or X-linked. Until now, no therapeutic consensus has emerged for this rare disease. Case presentation The purpose of this article was to report treatments of AIH patients from childhood to early adulthood. Treatment of three patients of 3, 8 16 years old are described. Each therapeutic option was discussed according to patients’ age and type of enamel alteration. Paediatric crowns and resin based bonding must be preferred in primary teeth. In permanent teeth, non-invasive or minimally invasive dentistry should be the first choice in order to follow a therapeutic gradient from the less invasive options to prosthodontic treatments. Conclusion Functional and aesthetic issues require patients to be treated; this clinical care should be provided as early as possible to enable a harmonious growth of the maxillofacial complex and to prevent pain.
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- 2018
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895. Head to Knee: Cranial Neural Crest-Derived Cells as Promising Candidates for Human Cartilage Repair
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Ihsène Taïhi, Ali Nassif, Juliane Isaac, Benjamin Philippe Fournier, and François Ferré
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Internal medicine ,RC31-1245 - Abstract
A large array of therapeutic procedures is available to treat cartilage disorders caused by trauma or inflammatory disease. Most are invasive and may result in treatment failure or development of osteoarthritis due to extensive cartilage damage from repeated surgery. Despite encouraging results of early cell therapy trials that used chondrocytes collected during arthroscopic surgery, these approaches have serious disadvantages, including morbidity associated with cell harvesting and low predictive clinical outcomes. To overcome these limitations, adult stem cells derived from bone marrow and subsequently from other tissues are now considered as preferred sources of cells for cartilage regeneration. Moreover, with new evidence showing that the choice of cell source is one of the most important factors for successful cell therapy, there is growing interest in neural crest-derived cells in both the research and clinical communities. Neural crest-derived cells such as nasal chondrocytes and oral stem cells that exhibit chondrocyte-like properties seem particularly promising in cartilage repair. Here, we review the types of cells currently available for cartilage cell therapy, including articular chondrocytes and various mesenchymal stem cells, and then highlight recent developments in the use of neural crest-derived chondrocytes and oral stem cells for repair of cartilage lesions.
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- 2019
- Full Text
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896. Validation of Housekeeping Genes to Study Human Gingival Stem Cells and Their In Vitro Osteogenic Differentiation Using Real-Time RT-qPCR
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Ihsène Taïhi, Ali Nassif, Tsouria Berbar, Juliane Isaac, Ariane Berdal, Bruno Gogly, and Benjamin Philippe Fournier
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Internal medicine ,RC31-1245 - Abstract
Gingival stem cells (GSCs) are recently isolated multipotent cells. Their osteogenic capacity has been validated in vitro and may be transferred to human cell therapy for maxillary large bone defects, as they share a neural crest cell origin with jaw bone cells. RT-qPCR is a widely used technique to study gene expression and may help us to follow osteoblast differentiation of GSCs. For accurate results, the choice of reliable housekeeping genes (HKGs) is crucial. The aim of this study was to select the most reliable HKGs for GSCs study and their osteogenic differentiation (dGSCs). The analysis was performed with ten selected HKGs using four algorithms: ΔCt comparative method, GeNorm, BestKeeper, and NormFinder. This study demonstrated that three HKGs, SDHA, ACTB, and B2M, were the most stable to study GSC, whereas TBP, SDHA, and ALAS1 were the most reliable to study dGSCs. The comparison to stem cells of mesenchymal origin (ASCs) showed that SDHA/HPRT1 were the most appropriate for ASCs study. The choice of suitable HKGs for GSCs is important as it gave access to an accurate analysis of osteogenic differentiation. It will allow further study of this interesting stem cells source for future human therapy.
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- 2016
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897. Pertinence de la prise en charge initiale aux urgences pédiatriques par les internes et son évolution au cours d'un semestre
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Jugnet, Stéphanie, Thèses d'exercice et mémoires - UFR de Médecine Montpellier-Nîmes, Université de Montpellier (UM), and Philippe Fournier
- Subjects
Urgences pédiatriques ,Séniorisation ,Examens complémentaires ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
Introduction : la fréquentation des services d’urgences est en constante augmentation, avec un temps d’attente lui aussi en augmentation. Ceci est en partie lié à la charge de travail par patient, avec de nombreux examens complémentaires demandés par les internes, parfois de manière nonadaptée et parfois non supervisée. Notre étude avait pour objectif d’évaluer l’estimation de la gravité et la pertinence des prescriptions initiales des internes au CHU de Nîmes, en les comparant aux prescriptions des séniors. Elle a également pour but d’évaluer l’évolution de ces prescriptions au cours du semestre.Méthodes : il s’agissait d’une étude prospective, monocentrique, descriptive réalisée aux urgences pédiatriques du CHU de Nîmes au cours du semestre d’été 2019. Elle comprenait trois évaluations étalées sur le semestre sous forme de cas cliniques et de questionnaires sur les prescriptions initiales (thérapeutiques et d’examens complémentaires) ainsi que sur la gravité et l’orientation proposées par les internes. Nous avons analysé séparément les cas pratiques et théoriques, puis l’évolution entre les périodes grâce au test des rangs appariés de Wilcoxon.Résultats : nous avons mis en évidence une surévaluation globale par les internes de la gravité lors des deux premières périodes. Il n’y avait dans l’ensemble pas de surprescription de la part des internes. On a retrouvé une amélioration, au cours du semestre, chez les internes urgentistesconcernant l’estimation de la gravité et la prescription d’examens complémentaires notamment biologiques, qu’on ne retrouve pas chez les internes en médecine générale. On retrouve également une amélioration de la prévision de l’orientation au cours du semestre, ainsi que sur les prescriptions d’examen radiologique entre les deux premières, et d’examen biologique entre les deux dernières périodes.Conclusion : dans notre étude nous avons retrouvé une surévaluation de la gravité mais pas de surprescription par les internes. En plus de la séniorisation en continue, d’autres moyens pour améliorer les prises en charge sont présents comme des cours initiaux et la présence deprotocole.
- Published
- 2019
898. Comparaison de la simulation haute-fidélité versus basse fidélité dans la formation à la réanimation cardio-pulmonaire du nourrisson et de l’enfant chez les sapeurs-pompiers du Gard
- Author
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Pappalardo, Pauline, Thèses d'exercice et mémoires - UFR de Médecine Montpellier-Nîmes, Université de Montpellier (UM), and Philippe Fournier
- Subjects
Compétences non techniques ,Simulation haute-fidélité ,Ottawa crisis resource management global scale ,Sapeurs-pompiers ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
Introduction : les compétences non techniques (CNT) sont essentielles à la prise en charge des situations de réanimation aigüe. Elles peuvent être enseignées grâce à la simulation haute fidélité mais celle-ci présente un certain coût. L'objectif de notre étude est de comparer la formation par simulation haute-fidélité versus simulation basse fidélité pour l'acquisition des CNT dans la réanimation cardiopulmonaire de l'enfant et du nourrisson chez les sapeurs-pompiers du Gard. Matériel et méthode : étude interventionnelle, prospective et comparative entre septembre 2018 et janvier 2019. Tous les sapeurs-pompiers du Gard étaient éligibles. Notre critère de jugement principal était l'Ottawa Crisis Resource Management Global Rating Scale. Résultats : parmi les 28 sapeurs-pompiers inclus, 92,6% étaient des hommes, 71,4% avaient été confrontés à une détresse vitale de l'enfant et tous estimaient avoir une formation pédiatrique insuffisante. Le score de CNT a montré une différence significative entre la formation par simulation basse fidélité et haute-fidélité: le score total était 67,1 % et 76,5 % respectivement pour la simulation basse et haute-fidélité (p=0,0003) avec une différence significative pour chaque domaine sauf le leadership. Conclusion : la simulation haute-fidélité permet une meilleure formation que la basse fidélité pour l'acquisition des CNT, facteur clé dans la prise en charge des réanimations. Il semble important d'étendre cette méthode d'enseignement à l'ensemble des professionnels de santé régulièrement et à long terme. Une étude évaluant son impact dans la vie réelle et une évaluation médico-économique de cette forme d'enseignement seraient intéressantes.
- Published
- 2019
899. Educating medical students on violence against women: a quasi experiment in the real world
- Author
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Romito, Patrizia, Grassi, Michele, Beltramini, Lucia, Zweyer, Marina, Lucia Beltramini, Naïma Bendriss, Isabelle Billette, Gaëlle Breton-Le Goff, Marc Cournoyer, Sylvie Daigneault, Philippe Fournier, Yolande Geadah, Michele Grassi, Christine Guillemaut, Carol Hagemann-White, Christelle Hamel, Armelle Le Bras-Chopard, Valérie Meunier, Julie Miville-Dechêne, Catherine Morency, Karol O’Brien, Geneviève Pollender, Ali Rame, David Risse, Celia Rojas-Viger, Patrizia Romito, Katja Smedslund, Claudine Thibaudeau, Joane Turgeon, Marina Zweyer, Katja Smedslund, David Risse, Romito, Patrizia, Grassi, Michele, Beltramini, Lucia, and Zweyer, Marina
- Subjects
gender differences ,adolescent ,Intimate partner violence ,sexual violence ,adolescents ,mental health - Abstract
Ce chapitre est organisé autour de la question d’une double responsabilité : d’une part, la responsabilité du personnel de santé d’être informé et compétent sur le sujet de violences masculines envers les femmes (VeF); de l’autre, la responsabilité de ceux/celles qui interviennent dans le social d’évaluer leur interventions, puisque une intervention, même bien construite, pourrait avoir des effets négatifs ou n’avoir pas d’effets du tout. La violence a des sérieuses conséquences sur la santé. Les médecins devraient être en mesure d’aider les victimes, mais ils manquent souvent des connaissances, ou ne se sentent pas concernés : sensibiliser les étudiant-e-s est donc une étape nécessaire. En 2009, un cours sur la VeF a été proposé aux étudiant-e-s en médicine à Trieste (Italie). Pour l’évaluation du cours nous avons utilisé une approche quasi-expérimentale, avec des questionnaires pré et posttest, et avec un groupe expérimental (N=75) et un groupe de contrôle (N=63). Les résultats montrent que, au départ, il n’y avait pas de différences entre les deux groupes concernant connaissances et attitudes relatives à la VeF. Après le cours, les étudiant-e-s du groupe expérimental avaient plus de connaissances, se sentaient plus concernées et présentaient moins de préjugés, alors que aucun changement n’a été observé pour le groupe de contrôle. Les commentaires des étudiant-e-s confirment que la participation au cours a modifié leur perception de la VeF. Tous/toutes ont qualifié ces changements de très positifs; toutefois une minorité dit avoir été mal à l’aise face à ce qu’ils considéraient une approche féministe. Cette étude indique que qu’il est possible de mettre en œuvre une évaluation rigoureuse et que ce cours sur la VeF a eu un impact positif.
- Published
- 2014
900. The density-based clustering method for privacy-preserving data mining.
- Author
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Wu JM, Lin JC, Viger PF, Djenouri Y, Chen CH, and Li ZC
- Subjects
- Algorithms, Biological Evolution, Databases, Factual, Software, Cluster Analysis, Computational Biology methods, Data Mining methods, Privacy
- Abstract
Privacy-preserving data mining has become an interesting and emerging issue in recent years since it can, not only hide the sensitive information but still mine the meaningful knowledge at the same time. Since privacy-preserving data mining is a non-trivial task, which is also concerned as a NP-hard problem, several evolutionary algorithms were presented to find the optimized solutions but most of them focus on considering a single-objective function with the pre-defined weight values of three side effects ( hiding failure, missing cost, and artificial cost ). In this paper, we aim at designing a multiple objective particle swarm optimization method for hiding the sensitive information based on the density clustering approach (named CMPSO). The presented CMPSO is more flexible to select the most appropriate solutions for hiding the sensitive information based on user's preference. Extensive experiments are carried on two datasets to show that the designed CMPSO algorithm has good performance than the traditional single-objective evolutionary approaches in terms of three side effects.
- Published
- 2019
- Full Text
- View/download PDF
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