451. Genetic composition of replication competent clonal HIV-1 variants isolated from peripheral blood mononuclear cells (PBMC), HIV-1 proviral DNA from PBMC and HIV-1 RNA in serum in the course of HIV-1 infection.
- Author
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Edo-Matas D, van Gils MJ, Bowles EJ, Navis M, Rachinger A, Boeser-Nunnink B, Stewart-Jones GB, Kootstra NA, van 't Wout AB, and Schuitemaker H
- Subjects
- CD4 Lymphocyte Count, Cloning, Molecular, HIV Envelope Protein gp160 chemistry, HIV Envelope Protein gp160 genetics, HIV Infections virology, HIV-1 classification, HIV-1 isolation & purification, HIV-1 physiology, Humans, Receptors, CCR5 metabolism, Receptors, CXCR4 metabolism, Viral Load, Virus Replication, DNA, Viral analysis, DNA, Viral genetics, DNA, Viral isolation & purification, Genetic Variation, HIV-1 genetics, Leukocytes, Mononuclear virology, Proviruses genetics, Proviruses isolation & purification, RNA, Viral blood, RNA, Viral genetics
- Abstract
The HIV-1 quasispecies in peripheral blood mononuclear cells (PBMC) is considered to be a mix of actively replicating, latent, and archived viruses and may be genetically distinct from HIV-1 variants in plasma that are considered to be recently produced. Here we analyzed the genetic relationship between gp160 env sequences from replication competent clonal HIV-1 variants that were isolated from PBMC and from contemporaneous HIV-1 RNA in serum and HIV-1 proviral DNA in PBMC of four longitudinally studied therapy naïve HIV-1 infected individuals. Replication competent clonal HIV-1 variants, HIV-1 RNA from serum, and HIV-1 proviral DNA from PBMC formed a single virus population at most time points analyzed. However, an under-representation in serum of HIV-1 sequences with predicted CXCR4 usage was sometimes observed implying that the analysis of viral sequences from different sources may provide a more complete assessment of the viral quasispecies in peripheral blood in vivo., (Copyright 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
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