427 results on '"Benyagoub A"'
Search Results
402. Studies of surface nanostructure formation due to swift heavy ion irradiation under grazing incidence.
- Author
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E Gruber, E Lattouf, L Bergen, P Salou, C Grygief, Y Y Wang, O Ochedowski, A Benyagoub, D Levavasseur, J Rangama, H Lebius, B Ban d'Etat, M Schleberger, and F Aumayr
- Published
- 2015
- Full Text
- View/download PDF
403. Antioxidant and Antimicrobial Activity of Moringa oleifera Extracts from South West of Algeria.
- Author
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Seghir, A., Abdenbi, A., Bouderba, N. Nahal, Saad, A., Moussaoui, A., and Benyagoub, E.
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MORINGA oleifera , *ANTI-infective agents , *CITROBACTER freundii , *ACINETOBACTER baumannii , *ANTIOXIDANT testing - Abstract
The current study focuses on the phytochemical characterization and biological activity of phenolic compounds derived from leaves of Moringa oleifera Lam. (Moringaceae) in the Tabelbala area (Bechar, Algeria). For a concentration of 1 mg/ml, the antioxidant tests revealed that the different extracts have a good reducing activity, with the tannin extract having the highest percentage of free radical inhibition (DPPH: 94%) compared to the n-butanolic extract (92%) and the ethyl acetate extract (88%). Furthermore, the tannin extract and the n-butanolic fraction of the flavonoids of the examined leaves showed significant antioxidant activity compared to ascorbic acid used as a reference (IC50 = 0.05 ± 0.14 mg/ml), with IC50 values of 0.07 ± 0.79 mg/ml for tannins and 0.0823 ± 0.25 mg/ml for the n-butanolic extract. In addition, the ferric reduction antioxidant power (FRAP) test reveals that all the tested extracts have a significant reduction power. The different selective extracts showed strong antimicrobial activity against nine pathogenic microbial strains: Escherichia coli (ATCC 25922), Pseudomonas aeruginosa (ATCC 27853), Klebsiella pneumoniae (ATCC 13883), Citrobacter freundii (ATCC 29212), Acinetobacter baumannii (ATCC 19606), Bacillus cereus (ATCC 11778), Staphylococcus aureus (ATCC 25923), Enterococus faecalis (ATCC 13045), and Candida albicans, where the ethyl acetate fraction has a higher antibacterial activity than n-butanolic and tannin extract, with the zone of inhibition diameters ranging from 11 to 23 mm and have minimum inhibitory concentrations (MIC) between 0.39 and 3.125 mg/ml. These findings give scientific support for the plant's traditional use, highlighting the value of traditional medicines in the treatment of many diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
404. Data consistencies of swift heavy ion induced damage creation in yttrium iron garnet analyzed by different techniques.
- Author
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Meftah, A., Benhacine, H., Benyagoub, A., Grob, J.J., Izerrouken, M., Kadid, S., Khalfaoui, N., Stoquert, J.P., Toulemonde, M., and Trautmann, C.
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HEAVY ions , *YTTRIUM iron garnet , *SINGLE crystals , *IRRADIATION , *ELECTRON energy loss spectroscopy , *PROFILOMETER , *RUTHERFORD backscattering spectrometry , *CHANNELING (Physics) - Abstract
Pronounced swelling is observed when single crystals of yttrium iron garnet Y 3 Fe 5 O 12 (YIG) are irradiated in the electronic energy loss regime with various swift heavy ions. The out-of-plane swelling was measured by scanning across the border line between an irradiated and a virgin area of the sample surface with the tip of a profilometer. The step height varied between 20 and 600 nm depending on fluence, electronic energy loss and total range of the ions. The step height divided by the ion range as a function of the ion fluence exhibits a linear increase in the initial phase and saturates at high fluences leading to a density decrease of around 1.7%. With complementary channeling-Rutherford-backscattering experiments (c-RBS), the damage fraction and the corresponding damage cross section were extracted and compared to the cross section deduced from swelling measurements. Irradiation effects were also characterized by scanning force microscopy (SFM). A threshold for damage creation as deduced from all the present physical characterizations is 5.5 ± 1.0 keV/nm. The value is in full agreement with previous measurements confirming that swelling and SFM characterizations can provide information concerning the electronic energy loss threshold for track formation. In contrast, track radii deduced from swelling measurements are smaller and radii from SFM are larger than deduced from c-RBS analysis. The results of Y 3 Fe 5 O 12 of this work are compared with data obtained for other crystalline oxides and for ionic crystals. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
405. Amorphization of Pd-Si at 300 K
- Author
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Traverse, A., Chaumont, J., Jun, Fan Xiang, Benyagoub, A., Bernas, H., and Thome, L.
- Subjects
ION implantation ,PALLADIUM ,SILICON - Published
- 1984
406. Structural modification of C-doped SiO2 induced by swift heavy ion irradiations
- Author
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Wang, Z.G., Zhao, Z.M., Benyagoub, A., Toulemonde, M., Levesque, F., Song, Y., Jin, Y.F., Sun, Y.M., Liu, C.B., Zang, H., and Wei, K.F.
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IONS , *IRRADIATION , *FOURIER transform infrared spectroscopy , *PROPERTIES of matter - Abstract
Abstract: Thermally grown amorphous SiO2 samples were implanted at room temperature (RT) with 120keV C-ions to a dose ranging from 1.0×1016 to 8.6×1017C ions/cm2, then irradiated at RT with 950MeV Pb, 345 or 1754MeV Xe ions to a fluence in the region from 1.0×1011 to 3.8×1012 ions/cm2, respectively. The irradiated samples were investigated using micro-FTIR and micro-Raman spectroscopes. It was found that new chemical bonds such as Si–C, Ce:glyph name="tbnd" />C and Si(C)–O–C bonds formed significantly in the C-doped SiO2 films after heavy ion irradiations. The evolution of Si–O–C bonds and possible mechanism of structural modification in C-doped SiO2 induced by swift heavy ion irradiations were discussed. [Copyright &y& Elsevier]
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- 2007
- Full Text
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407. Towards ps-LIBS tritium measurements in W/Al materials.
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Bultel, Arnaud, Morel, Vincent, Favre, Aurélien, Godard, Gilles, Benyagoub, Abdenacer, Monnet, Isabelle, Sémérok, Alexandre, Dinescu, Maria, Markelj, Sabina, Magaud, Philippe, and Grisolia, Christian
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PICOSECOND pulses , *TRITIUM , *ULTRASHORT laser pulses , *PLASMA density , *BERYLLIUM , *RADIANCE - Abstract
This communication deals with experimental results crucial for the sizing of picosecond LIBS measurements dedicated to the determination of tritium density profiles in the plasma facing components. Ablation properties in single pulse on aluminum (considered as a surrogate of beryllium) and tungsten have been obtained for 532 and 1064 nm picosecond laser pulses. Then, double pulse experiments have been performed to estimate the role played by the second pulse on the spectral radiance observed for lines representative of the ionization degree of the plasma and possible observation of low radiance lines. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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408. Ion Tracks and Microstructures in Barium Titanate Irradiated with Swift Heavy Ions: A Combined Experimental and Computational Study
- Author
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Benyagoub, Abdenacer
- Published
- 2013
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409. TiO2 films photocatalytic activity improvements by swift heavy ions irradiation.
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Rafik, Hazem, Mahmoud, Izerrouken, Mohamed, Trari, and Abdenacer, Benyagoub
- Subjects
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TITANIUM dioxide films synthesis , *PHOTOCATALYSIS , *HEAVY ions , *IRRADIATION , *SOL-gel processes , *SURFACE topography , *X-ray diffraction - Abstract
Abstract: TiO2 thin films synthesized by sol–gel on glass substrates are irradiated by 90MeV Xe ions at various fluences and room temperature under normal incidence. The structural, electrical, optical and surface topography properties before and after Xe ions irradiation are investigated. X-ray diffraction (XRD) reveals that the crystallinity is gradually destroyed, and the films become amorphous above 5×1012 ions/cm2. The band gap is not affected by Xe ions irradiation as evidenced from the optical measurements. By contrast, the conductivity increases with raising Xe fluence. The energy band diagram established from the electrochemical characterization shows the feasibility of TiO2 films for the photo-electrochemical chromate reduction. Xe ion irradiation results in enhanced photocatalytic activity in aquatic medium, evaluated by the reduction of Cr(VI) into trivalent state. TiO2 films irradiated at 1013 Xe/cm2 exhibit the highest photoactivity; 69% of chromate (10ppm) is reduced at pH ~3 after 4h of exposure to sunlight (1120mWcm−2) with a quantum yield of 0.06%. [Copyright &y& Elsevier]
- Published
- 2014
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410. Radiation damage induced by swift heavy ions in TiO2 sol–gel films nanocrystallines.
- Author
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Hazem, R., Izerrouken, M., Sari, A., Kermadi, S., Msimanga, M., Benyagoub, A., Maaza, M., Belgaid, M., and Boumaour, M.
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RADIATION , *HEAVY ions , *TITANIUM oxides , *SOL-gel processes , *NANOCRYSTALS , *ATOMIC force microscopy - Abstract
TiO2 films prepared by sol–gel were irradiated with 25.8MeV Cu and 90MeV Xe ions at room temperature under normal incidence. The irradiation with Cu and Xe ions were performed respectively at iThemba labs, South Africa and GANIL, Caen, France. The properties of radiation defects induced in TiO2 nanostructures were investigated using grazing angle X-ray diffraction (GAXRD), atomic force microscopy (AFM) and UV–visible spectrophotometry. From GAXRD analysis, it is found that anatase (101) peak intensity decrease with increasing the fluence and disappear completely above a threshold ion fluence of 5×1012 ion/cm2. This indicates that the crystallinity of the TiO2 film is destroyed upon irradiation due to the amorphous track formation. The track radius estimated from the Poisson’s law is about 2 and 4nm after irradiation with 25.8MeV Cu and 90MeV Xe ions, respectively. According to the AFM analysis, the elaborated TiO2 films are composed of particles with a triangular shape of a size in the range of 200–500nm. It is found that the particle size increases after irradiation with both Cu and Xe ions. In addition, the root-mean-square (RMS) surface roughness for 780nm×780nm area scans decreases exponentially with increasing fluence up to 1013 ions/cm2 in the case of Xe irradiation, but increases drastically above 2.68×1011 ions/cm2 in the case of Cu ion irradiation and reaches a mean value of ∼3nm. The absorption measurements reveal that the optical band gap is not affected by both Xe and Cu ions irradiation. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
411. Dynamics of charge evolution in glass capillaries for 230-keV Xe23+ ions.
- Author
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Cassimi, A., Ikeda, T., Maunoury, L., Zhou, C. L., Guillous, S., Mery, A., Lebius, H., Benyagoub, A., Grygiel, C., Khemliche, H., Roncin, P., Merabet, H., and Tanis, J. A.
- Subjects
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BEAM dynamics , *POLYMERS , *POLYETHYLENE terephthalate , *OSCILLATIONS , *PHOTON emission , *ION-atom collisions - Abstract
We have measured the transmission of 230-keV (10-keV/g) Xe23+ ions through insulating tapered glass capillaries of microscopic dimensions. The dynamics of charging and discharging processes have been investigated, evidencing an unexpected slow alignment of the beam along the capillary axis. Oscillations of the exiting beam position have been observed during the charging process associated to the formation of charge patches on the capillary inner walls. The emerging ions are guided with a characteristic guiding angle falling on a universal curve proposed for PET polymer nanocapillaries. This result, very similar to the channeling process, is somewhat surprising in view of the significant differences between the straight nanocapillary polymer foils and the tapered microscopic single glass capillary used here. The transmitted ions show no evidence of energy loss or charge changing except for the production of a small neutral fraction that was determined to be due to ions that had become neutralized to form atoms rather than due to photon emission. These results thus test and confirm the validity of transmission and guiding and provide insight into the dynamics of higher-energy ions than have been previously studied in this regard, allowing a determination of the maximum energy for which the guiding process might occur. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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412. Double pulse laser-induced plasmas on W and Al by ps-LIBS: Focus on the plasma-second pulse interaction.
- Author
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Favre, Aurélien, Morel, Vincent, Bultel, Arnaud, Godard, Gilles, Idlahcen, Said, Benyagoub, Abdenacer, Monnet, Isabelle, Sémérok, Alexandre, Dinescu, Maria, Markelj, Sabina, Magaud, Philippe, and Grisolia, Christian
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LASER plasmas , *LASER-induced breakdown spectroscopy , *BERYLLIUM , *ELECTRON density , *METALS , *HYDROGEN isotopes , *LIGHT elements - Abstract
The LIBS (laser-induced breakdown spectroscopy) method can be implemented to determine the multi-elemental composition of solid samples. Unfortunately, the precision of the usual LIBS configuration (single pulse) is rather low for light elements in metallic matrices. The double pulse configuration can help to overcome this difficulty. Indeed, the electron temperature and density are significantly increased by the second pulse absorbed by the plasma produced by the first pulse which leads to a higher signal-to-noise ratio. The present paper reports preliminary results in double pulse configuration on fusion-relevant materials, i.e. aluminum (considered as a beryllium surrogate) and tunsgten, in the perspective of the test of this technique to measure in situ the hydrogen isotopes concentration of the divertor and the first wall of an ITER-like tokamak. The plasma spectroscopic analysis is performed to derive the gain in electron density reached by the absorption of the second pulse. In parallel, the spectral absorptivity of the plasma regarding the second pulse is determined to correlate the electron density dynamics to the energy deposit. The absorption by the plasma of the second pulse is then quantified at the atomic and macroscopic scales. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
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413. Effets d'irradiation et diffusion des produits de fission (césium et iode) dans le carbure de silicium
- Author
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Audren, Aurégane, Centre Interdisciplinaire de Recherche Ions Lasers (CIRIL), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-École Nationale Supérieure d'Ingénieurs de Caen (ENSICAEN), Normandie Université (NU)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Université de Caen, and Abdenacer Benyagoub(benyagoub@ganil.fr)
- Subjects
ion-diffusion ,irradiation ,amorphisation ,[PHYS.PHYS]Physics [physics]/Physics [physics] ,crystals annealing ,recuit des cristaux ,ion**implantation ,Silicium carbide ,Carbure de silicium ,amorphization - Abstract
Silicon carbide is envisaged as a cladding material for the nuclear fuel in the fourth generation reactors. The aim of this work is to study the capacity to retain fission products and the structure evolution of this material under the combined effects of temperature and irradiation. The low energy ion implantations and the incorporation of stable analogues of fission products (Cs and I) in single crystalline 6H-SiC samples were performed by using the ion implanter or the accelerator of the CSNSM. The high energy heavy ion irradiations were made at GANIL. The evolution of the implanted ion profiles and the crystal structure were studied by RBS and Channeling. Complementary information were obtained by using the UV-visible absorption spectroscopy. The low energy ion implantations at room temperature induce a fast structural damage in the crystal. On the other hand, it is possible to attain a small disorder rate in the crystal during implantation by increasing the implantation temperature (600 °C). The high energy heavy ion irradiations do not damage the SiC crystals. On the contrary, they cause an annealing of the disorder created by the low energy implantations. The implanted ions (I) do not diffuse during low or high energy ion irradiations at room temperature and at 600 °C. However, a diffusion of Cs ions was observed during a post-implantation annealing at 1300 °C. At this temperature, the crystal which had an extended amorphous layer starts to recover a single-crystal structure.; Le carbure de silicium est un matériau envisagé pour le conditionnement du combustible dans les réacteurs de quatrième génération. Ce travail a pour objectif d'étudier la capacité de confinement des produits de fission et l'évolution de la structure de ce matériau sous les effets combinés de la température et du rayonnement. Les implantations d'ions de basse énergie et l'incorporation d'analogues stables de produits de fission (Cs et I) dans des monocristaux de 6H-SiC ont été réalisées sur l'implanteur ou l'accélérateur du CSNSM. Les irradiations avec des ions lourds de haute énergie ont été effectuées au GANIL. L'évolution du profil des ions implantés et de la structure du cristal a été étudiée par RBS et canalisation. Des informations complémentaires ont été apportées par la spectroscopie d'absorption UV-visible. Les implantations d'ions de basse énergie à température ambiante conduisent à l'endommagement rapide du cristal. Par contre, une élévation de la température d'implantation (600 °C) permet de conserver un faible taux de désordre dans le cristal. Les irradiations avec des ions lourds de haute énergie n'endommagent pas les cristaux de SiC mais au contraire, elles provoquent une guérison du désordre créé préalablement par l'implantation d'ions I de basse énergie. Ces marqueurs d'iode ne diffusent pas lors d'irradiations avec des ions lourds de basse ou de haute énergie à température ambiante ou à 600 °C. Cependant, une diffusion des ions Cs a été observée lors d'un recuit thermique post-implantation à 1300 °C, température à laquelle le cristal qui comportait une couche amorphe étendue commence à retrouver une structure monocristalline.
- Published
- 2007
414. Irradiation effects and diffusion of fission products (cesium and iodine) in silicon carbide
- Author
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Audren, Aurégane, Audren, Aurégane, Centre Interdisciplinaire de Recherche Ions Lasers (CIRIL), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-École Nationale Supérieure d'Ingénieurs de Caen (ENSICAEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS), Université de Caen, and Abdenacer Benyagoub(benyagoub@ganil.fr)
- Subjects
ion-diffusion ,[PHYS.PHYS]Physics [physics]/Physics [physics] ,irradiation ,amorphisation ,crystals annealing ,[PHYS.PHYS] Physics [physics]/Physics [physics] ,recuit des cristaux ,ion**implantation ,Silicium carbide ,Carbure de silicium ,amorphization - Abstract
Silicon carbide is envisaged as a cladding material for the nuclear fuel in the fourth generation reactors. The aim of this work is to study the capacity to retain fission products and the structure evolution of this material under the combined effects of temperature and irradiation. The low energy ion implantations and the incorporation of stable analogues of fission products (Cs and I) in single crystalline 6H-SiC samples were performed by using the ion implanter or the accelerator of the CSNSM. The high energy heavy ion irradiations were made at GANIL. The evolution of the implanted ion profiles and the crystal structure were studied by RBS and Channeling. Complementary information were obtained by using the UV-visible absorption spectroscopy. The low energy ion implantations at room temperature induce a fast structural damage in the crystal. On the other hand, it is possible to attain a small disorder rate in the crystal during implantation by increasing the implantation temperature (600 °C). The high energy heavy ion irradiations do not damage the SiC crystals. On the contrary, they cause an annealing of the disorder created by the low energy implantations. The implanted ions (I) do not diffuse during low or high energy ion irradiations at room temperature and at 600 °C. However, a diffusion of Cs ions was observed during a post-implantation annealing at 1300 °C. At this temperature, the crystal which had an extended amorphous layer starts to recover a single-crystal structure., Le carbure de silicium est un matériau envisagé pour le conditionnement du combustible dans les réacteurs de quatrième génération. Ce travail a pour objectif d'étudier la capacité de confinement des produits de fission et l'évolution de la structure de ce matériau sous les effets combinés de la température et du rayonnement. Les implantations d'ions de basse énergie et l'incorporation d'analogues stables de produits de fission (Cs et I) dans des monocristaux de 6H-SiC ont été réalisées sur l'implanteur ou l'accélérateur du CSNSM. Les irradiations avec des ions lourds de haute énergie ont été effectuées au GANIL. L'évolution du profil des ions implantés et de la structure du cristal a été étudiée par RBS et canalisation. Des informations complémentaires ont été apportées par la spectroscopie d'absorption UV-visible. Les implantations d'ions de basse énergie à température ambiante conduisent à l'endommagement rapide du cristal. Par contre, une élévation de la température d'implantation (600 °C) permet de conserver un faible taux de désordre dans le cristal. Les irradiations avec des ions lourds de haute énergie n'endommagent pas les cristaux de SiC mais au contraire, elles provoquent une guérison du désordre créé préalablement par l'implantation d'ions I de basse énergie. Ces marqueurs d'iode ne diffusent pas lors d'irradiations avec des ions lourds de basse ou de haute énergie à température ambiante ou à 600 °C. Cependant, une diffusion des ions Cs a été observée lors d'un recuit thermique post-implantation à 1300 °C, température à laquelle le cristal qui comportait une couche amorphe étendue commence à retrouver une structure monocristalline.
- Published
- 2007
415. Relation entre le gonflement et la creation de defauts dans les cristaux ioniques irradies par des ions lourds rapides
- Author
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Boccanfuso, Marc, Centre Interdisciplinaire de Recherche Ions Lasers (CIRIL), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-École Nationale Supérieure d'Ingénieurs de Caen (ENSICAEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS), Université de Caen, Benyagoub Abdenacer, Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-École Nationale Supérieure d'Ingénieurs de Caen (ENSICAEN), Normandie Université (NU)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), and Boccanfuso, Marc
- Subjects
Irradiation cristaux isolant materiau ion lourd endommagement ,[PHYS.PHYS]Physics [physics]/Physics [physics] ,[PHYS.PHYS] Physics [physics]/Physics [physics] - Abstract
When fast heavy ions penetrate in matter, they slow down essentially by depositing their energy on the electrons. This can lead to strong electronic excitation densities in the solid and then to structural modifications. In this work, calcium fluoride (CaF2) was used to look further into the damage induced by irradiation with fast heavy ions in ionic crystals. Four techniques were mainly employed to characterise this damage. These techniques of analysis are wide angle X-ray diffraction, surface profilometry, Rutherford backscattering spectrometry and UV-visible optical absorption spectroscopy. The results of this work show that CaF2 answers in a multiple way to the electronic excitations. For stopping powers higher than approximately 5 keV/nm, a polygonization seems to occur. This causes a structural disorder, a swelling of 0.27 % and the formation of fractures in the material. A second damage mechanism is caused above approximately 13 keV/nm and results in a loss of the initial crystalline structure. However, optical centres appear whatever the ion stopping power, which indicates that these defects cannot be the cause of the two above mentioned damage mechanisms. According to a thermal spike model, the two thresholds can be linked to melting and sublimation energy of the material, respectively., Lorsque des ions lourds rapides pénètrent dans la matière, ils se ralentissent principalement en déposant leur énergie sur les électrons. Ceci peut conduire à de fortes densités d'excitations électroniques dans le matériau et ainsi à des modifications structurales. Dans ce travail, le fluorure de calcium (CaF2) a été utilisé pour approfondir l'étude de l'endommagement des cristaux ioniques par irradiation avec ces ions lourds rapides. Quatre techniques ont principalement été employées pour caractériser cet endommagement. Ces techniques d'analyse sont la diffraction de rayons X aux grands angles, la profilométrie de surface, la spectrométrie de rétrodiffusion Rutherford en canalisation et la spectroscopie d'absorption optique UV-visible. Les résultats de ce travail montrent que le CaF2 répond de manière multiple aux excitations électroniques créées par l'irradiation. Pour des pouvoirs d'arrt supérieurs à environ 5 keV/nm, un phénomène de polygonisation semble se produire. Ceci provoque un désordre structural, un gonflement de 0,27 % du matériau et la formation de fractures. Un deuxième mécanisme d'endommagement est occasionné au-dessus d'environ 13 keV/nm et se traduit par une perte de la structure cristalline d'origine. Cependant, des centres absorbants apparaissent quel que soit le pouvoir d'arrèt des ions, ce qui indique que ces défauts ne peuvent tre la cause des deux mécanismes d'endommagement précédents. L'interprétation par un modèle de pointe thermique permet d'associer les deux seuils précédents respectivement aux énergies de fusion et de sublimation du matériau.
- Published
- 2001
416. A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy.
- Author
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Huber F, Arnaud M, Stevenson BJ, Michaux J, Benedetti F, Thevenet J, Bobisse S, Chiffelle J, Gehert T, Müller M, Pak H, Krämer AI, Altimiras ER, Racle J, Taillandier-Coindard M, Muehlethaler K, Auger A, Saugy D, Murgues B, Benyagoub A, Gfeller D, Laniti DD, Kandalaft L, Rodrigo BN, Bouchaab H, Tissot S, Coukos G, Harari A, and Bassani-Sternberg M
- Abstract
The accurate identification and prioritization of antigenic peptides is crucial for the development of personalized cancer immunotherapies. Publicly available pipelines to predict clinical neoantigens do not allow direct integration of mass spectrometry immunopeptidomics data, which can uncover antigenic peptides derived from various canonical and noncanonical sources. To address this, we present an end-to-end clinical proteogenomic pipeline, called NeoDisc, that combines state-of-the-art publicly available and in-house software for immunopeptidomics, genomics and transcriptomics with in silico tools for the identification, prediction and prioritization of tumor-specific and immunogenic antigens from multiple sources, including neoantigens, viral antigens, high-confidence tumor-specific antigens and tumor-specific noncanonical antigens. We demonstrate the superiority of NeoDisc in accurately prioritizing immunogenic neoantigens over recent prioritization pipelines. We showcase the various features offered by NeoDisc that enable both rule-based and machine-learning approaches for personalized antigen discovery and neoantigen cancer vaccine design. Additionally, we demonstrate how NeoDisc's multiomics integration identifies defects in the cellular antigen presentation machinery, which influence the heterogeneous tumor antigenic landscape., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
417. Mass Transport via In-Plane Nanopores in Graphene Oxide Membranes.
- Author
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Foller T, Madauß L, Ji D, Ren X, De Silva KKH, Musso T, Yoshimura M, Lebius H, Benyagoub A, Kumar PV, Schleberger M, and Joshi R
- Abstract
Angstrom-confined solvents in 2D laminates can travel through interlayer spacings, through gaps between adjacent sheets, and via in-plane pores. Among these, experimental access to investigate the mass transport through in-plane pores is lacking. Our experiments allow an understanding of this mass transport via the controlled variation of oxygen functionalities, size and density of in-plane pores in graphene oxide membranes. Contrary to expectations, our transport experiments show that higher in-plane pore densities may not necessarily lead to higher water permeability. We observed that membranes with a high in-plane pore density but a low amount of oxygen functionalities exhibit a complete blockage of water. However, when water-ethanol mixtures with a weaker hydrogen network are used, these membranes show an enhanced permeation. Our combined experimental and computational results suggest that the transport mechanism is governed by the attraction of the solvents toward the pores with functional groups and hindered by the strong hydrogen network of water formed under angstrom confinement.
- Published
- 2022
- Full Text
- View/download PDF
418. Charge Regulation at a Nanoporous Two-Dimensional Interface.
- Author
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Ghosh M, Junker MA, van Lent RTM, Madauß L, Schleberger M, Lebius H, Benyagoub A, Wood JA, and Lammertink RGH
- Abstract
In this work, we have studied the pH-dependent surface charge nature of nanoporous graphene. This has been investigated by membrane potential and by streaming current measurements, both with varying pH. We observed a lowering of the membrane potential with decreasing pH for a fixed concentration gradient of potassium chloride (KCl) in the Donnan dominated regime. Interestingly, the potential reverses its sign close to pH 4. The fitted value of effective fixed ion concentration ( C̅ ) in the membrane also follows the same trend. The streaming current measurements show a similar trend with sign reversal around pH 4.2. The zeta potential data from the streaming current measurement is further analyzed using a 1-pK model. The model is used to determine a representative pK (acid-base equilibrium constant) of 4.2 for the surface of these perforated graphene membranes. In addition, we have also theoretically investigated the effect of the PET support in our membrane potential measurement using numerical simulations. Our results indicate that the concentration drop inside the PET support can be a major contributor (up to 85%) for a significant deviation of the membrane potential from the ideal Nernst potential.
R ) in the membrane also follows the same trend. The streaming current measurements show a similar trend with sign reversal around pH 4.2. The zeta potential data from the streaming current measurement is further analyzed using a 1-pK model. The model is used to determine a representative pK (acid-base equilibrium constant) of 4.2 for the surface of these perforated graphene membranes. In addition, we have also theoretically investigated the effect of the PET support in our membrane potential measurement using numerical simulations. Our results indicate that the concentration drop inside the PET support can be a major contributor (up to 85%) for a significant deviation of the membrane potential from the ideal Nernst potential., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)- Published
- 2021
- Full Text
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419. Understanding Mono- and Bivalent Ion Selectivities of Nanoporous Graphene Using Ionic and Bi-ionic Potentials.
- Author
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Ghosh M, Madauß L, Schleberger M, Lebius H, Benyagoub A, Wood JA, and Lammertink RGH
- Abstract
Nanoporous graphene displays salt-dependent ion permeation. In this work, we investigate the differences in Donnan potentials arising between reservoirs, separated by a perforated graphene membrane, containing different cations. We compare the case of monovalent cations interacting with nanoporous graphene with the case of bivalent cations. This is accomplished through both measurements of membrane potential arising between two salt reservoirs at different concentrations involving a single cation (ionic potential) and between two reservoirs containing different cations at the same concentration (bi-ionic potential). In our present study, Donnan dialysis experiments involve bivalent MgCl
2 , CaCl2 , and CuCl2 as well as monovalent KCl and NH4 Cl salts. For all salts, except CuCl2 , clear Donnan and diffusion potential plateaus were observed at low and high salt concentrations, respectively. Our observations show that the membrane potential scaled to the Nernst potential for bivalent cations has a lower value (≈50%) than for monovalent cations (≈72%) in the Donnan exclusion regime. This is likely due to the adsorption of these bivalent cations on monolayer graphene. For bivalent cations, the diffusion regime is reached at a lower ionic strength compared to the monovalent cations. For Mg2+ and Ca2+ , the membrane potential does not seem to depend upon the type of ions in the entire ionic strength range. A similar behavior is observed for the KCl and NH4 Cl membrane potential curves. For CuCl2 , the membrane potential curve is shifted toward lower ionic strength compared to the other two bivalent salts and the Donnan plateau is not observed at the lowest ionic strength. Bi-ionic potential measurements give further insight into the strength of specific interactions, allowing for the estimation of the relative ionic selectivities of different cations based on comparing their bi-ionic potentials. This effect of possible ion adsorption on graphene can be removed through ion exchange with monovalent salts.- Published
- 2020
- Full Text
- View/download PDF
420. Highly active single-layer MoS 2 catalysts synthesized by swift heavy ion irradiation.
- Author
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Madauß L, Zegkinoglou I, Vázquez Muiños H, Choi YW, Kunze S, Zhao MQ, Naylor CH, Ernst P, Pollmann E, Ochedowski O, Lebius H, Benyagoub A, Ban-d'Etat B, Johnson ATC, Djurabekova F, Roldan Cuenya B, and Schleberger M
- Abstract
Two-dimensional molybdenum-disulfide (MoS2) catalysts can achieve high catalytic activity for the hydrogen evolution reaction upon appropriate modification of their surface. The intrinsic inertness of the compound's basal planes can be overcome by either increasing the number of catalytically active edge sites or by enhancing the activity of the basal planes via a controlled creation of sulfur vacancies. Here, we report a novel method of activating the MoS2 surface using swift heavy ion irradiation. The creation of nanometer-scale structures by an ion beam, in combination with the partial sulfur depletion of the basal planes, leads to a large increase of the number of low-coordinated Mo atoms, which can form bonds with adsorbing species. This results in a decreased onset potential for hydrogen evolution, as well as in a significant enhancement of the electrochemical current density by over 160% as compared to an identical but non-irradiated MoS2 surface.
- Published
- 2018
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421. Superoleophobic behavior induced by nanofeatures on oleophilic surfaces.
- Author
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Ramos SM, Benyagoub A, Canut B, and Jamois C
- Abstract
The control of surface wetting properties to produce robust and strong hydrophobic and oleophobic effects on intrinsically oleophilic surfaces is at the heart of many technological applications. In this paper, we explore the conditions to observe such effects when the roughness of the substrate is of fractal nature and consists of nanofeatures obtained by the ion track etching technique. The wetting properties were investigated using eight different liquids with surface tensions gamma varying from 18 to 72 mN m(-1). While it is observed that all the tested oils readily wet the flat substrates, it is found that the contact angles are systematically exalted on the rough surfaces even for the liquids with very low surface tension. For liquids with gamma > or = 25 mN m(-1) an oleophobic behavior is clearly induced by the nanostructuration. For liquids with gamma < 25 mN m(-1), although the contact angle is enhanced on the nanorough surfaces, it conserves its oleophilic character (theta* lower than 90 degrees). Moreover, our experiments show that even in the case of hexane, liquid having the lowest surface tension, the homogeneous wetting (Wenzel state) is never reached. This high resistance to liquid impregnation is discussed within the framework of recent approaches explaining the wetting properties of superoleophobic surfaces.
- Published
- 2010
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422. Local investigation of atomic transport induced in amorphous systems by swift-heavy-ion irradiation.
- Author
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Thomé L, Garrido F, Dran JC, Benyagoub A, Klaumünzer S, and Dunlop A
- Published
- 1992
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423. Phenomenology of the plastic flow of amorphous solids induced by heavy-ion bombardment.
- Author
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Klaumünzer S and Benyagoub A
- Published
- 1991
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424. Amorphization mechanisms in ion-bombarded metallic alloys.
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Benyagoub A and Thomé L
- Published
- 1988
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425. Channeling study of amorphous phase formation in Nisub3B by ion implantation.
- Author
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Benyagoub A, Pivin JC, Pons F, and Thomé L
- Published
- 1986
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426. Compositional dependence of radiation damage in ion-irradiated amorphous Ni-B.
- Author
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Audouard A, Benyagoub A, and Thomé L
- Published
- 1987
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427. Transformation to amorphous state of metals by ion implantation: P in Ni.
- Author
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Cohen C, Benyagoub A, Bernas H, Chaumont J, Thomé L, Berti M, and Drigo AV
- Published
- 1985
- Full Text
- View/download PDF
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