426 results on '"Baker, Robert L."'
Search Results
402. Variation within laminae: Semi-automated methods for quantifying leaf venation using phenoVein.
- Author
-
Newsome EL, Brock GL, Lutz J, and Baker RL
- Abstract
Premise: Physiological processes may vary within leaf laminae; however, the accompanying heterogeneity in leaf venation is rarely investigated because its quantification can be time consuming. Here we introduce accelerated protocols using existing software to increase sample throughput and ask whether laminae venation varies among three crop types and four subspecies of Brassica rapa ., Methods: FAA (formaldehyde, glacial acetic acid, and ethanol)-fixed samples were stored in ethanol. Without performing any additional clearing or staining, we tested two methods of image acquisition at three locations along the proximal-distal axis of the laminae and estimated the patterns of venation using the program phenoVein. We developed and made available an R script to handle the phenoVein output and then analyzed our data using linear mixed-effects models., Results: Beyond fixation and storage, staining and clearing are not necessary to estimate leaf venation using phenoVein if the images are acquired using a stereomicroscope. All estimates of venation required some manual adjustment. We found a significant effect of location within the laminae for all aspects of venation., Discussion: By removing the clearing and staining steps and utilizing the semi-automated program phenoVein, we quickly and cheaply acquired leaf venation data. Venation may be an important target for crop breeding efforts, particularly if intralaminar variation correlates with variation in physiological processes, which remains an open question., (© 2020 Newsome et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America.)
- Published
- 2020
- Full Text
- View/download PDF
403. Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development.
- Author
-
Baker RL, Leong WF, Brock MT, Rubin MJ, Markelz RJC, Welch S, Maloof JN, and Weinig C
- Subjects
- Bayes Theorem, Gene Expression Profiling methods, Gene Expression Regulation, Plant physiology, Gene Regulatory Networks genetics, Genomics methods, Genotype, Phenotype, Quantitative Trait Loci genetics, Transcriptome genetics, Brassica rapa genetics, Brassica rapa metabolism, Gene Expression Regulation, Plant genetics
- Abstract
Plant developmental dynamics can be heritable, genetically correlated with fitness and yield, and undergo selection. Therefore, characterizing the mechanistic connections between the genetic architecture governing plant development and the resulting ontogenetic dynamics of plants in field settings is critically important for agricultural production and evolutionary ecology. We use hierarchical Bayesian Function-Valued Trait (FVT) models to estimate Brassica rapa growth curves throughout ontogeny, across two treatments, and in two growing seasons. We find genetic variation for plasticity of growth rates and final sizes, but not the inflection point (transition from accelerating to decelerating growth) of growth curves. There are trade-offs between growth rate and duration, indicating that selection for maximum yields at early harvest dates may come at the expense of late harvest yields and vice versa. We generate eigengene modules and determine which are co-expressed with FVT traits using a Weighted Gene Co-expression Analysis. Independently, we seed a Mutual Rank co-expression network model with FVT traits to identify specific genes and gene networks related to FVT. GO-analyses of eigengene modules indicate roles for actin/cytoskeletal genes, herbivore resistance/wounding responses, and cell division, while MR networks demonstrate a close association between metabolic regulation and plant growth. We determine that combining FVT Quantitative Trait Loci (QTL) and MR genes/WGCNA eigengene expression profiles better characterizes phenotypic variation than any single data type (i.e. QTL, gene, or eigengene alone). Our network analysis allows us to employ a targeted eQTL analysis, which we use to identify regulatory hotspots for FVT. We examine cis vs. trans eQTL that mechanistically link FVT QTL with structural trait variation. Colocalization of FVT, gene, and eigengene eQTL provide strong evidence for candidate genes influencing plant height. The study is the first to explore eQTL for FVT, and specifically do so in agroecologically relevant field settings., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
- Full Text
- View/download PDF
404. A framework for genomics-informed ecophysiological modeling in plants.
- Author
-
Wang DR, Guadagno CR, Mao X, Mackay DS, Pleban JR, Baker RL, Weinig C, Jannink JL, and Ewers BE
- Subjects
- Ecosystem, Genotype, Models, Genetic, Stress, Physiological genetics, Stress, Physiological physiology, Genomics methods, Plants genetics
- Abstract
Dynamic process-based plant models capture complex physiological response across time, carrying the potential to extend simulations out to novel environments and lend mechanistic insight to observed phenotypes. Despite the translational opportunities for varietal crop improvement that could be unlocked by linking natural genetic variation to first principles-based modeling, these models are challenging to apply to large populations of related individuals. Here we use a combination of model development, experimental evaluation, and genomic prediction in Brassica rapa L. to set the stage for future large-scale process-based modeling of intraspecific variation. We develop a new canopy growth submodel for B. rapa within the process-based model Terrestrial Regional Ecosystem Exchange Simulator (TREES), test input parameters for feasibility of direct estimation with observed phenotypes across cultivated morphotypes and indirect estimation using genomic prediction on a recombinant inbred line population, and explore model performance on an in silico population under non-stressed and mild water-stressed conditions. We find evidence that the updated whole-plant model has the capacity to distill genotype by environment interaction (G×E) into tractable components. The framework presented offers a means to link genetic variation with environment-modulated plant response and serves as a stepping stone towards large-scale prediction of unphenotyped, genetically related individuals under untested environmental scenarios., (© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
- Published
- 2019
- Full Text
- View/download PDF
405. Differences in Knee and Hip Adduction and Hip Muscle Activation in Runners With and Without Iliotibial Band Syndrome.
- Author
-
Baker RL, Souza RB, Rauh MJ, Fredericson M, and Rosenthal MD
- Subjects
- Arthralgia diagnosis, Biomechanical Phenomena, Cross-Sectional Studies, Female, Hip Joint physiology, Humans, Iliotibial Band Syndrome diagnosis, Knee Joint physiology, Male, Pain Measurement, Psoas Muscles physiology, Quadriceps Muscle physiology, Reference Values, Risk Assessment, Treatment Outcome, Arthralgia rehabilitation, Electromyography methods, Iliotibial Band Syndrome rehabilitation, Range of Motion, Articular physiology, Running injuries
- Abstract
Background: Iliotibial band syndrome has been associated with altered hip and knee kinematics in runners. Previous studies have recommended further research on neuromuscular factors at the hip. The frontal plane hip muscles have been a strong focus in strength comparison but not for electromyography investigation., Objective: To compare hip surface electromyography, and frontal plane hip and knee kinematics, in runners with and without iliotibial band syndrome., Design: Observational cross-sectional study., Setting: Biomechanics research laboratory within a university., Participants: Thirty subjects were recruited consisting of 15 injured runners with iliotibial band syndrome and 15 gender-, age-, and body mass index-matched controls. In each group, 8 were male runners and 7 were female runners. Inclusion criteria for the injured group were pain within 2 months related to iliotibial band syndrome and a positive Noble compression test. Participants were excluded if they reported other lower extremity diagnoses within the last year or active lower extremity or low back pain not related to iliotibial band syndrome. Controls were excluded if they reported a history of iliotibial band syndrome. Convenience sampling was used based on referrals from local running clinics and orthopedic clinics., Methods: Three-dimensional motion capture was performed with 10 high-speed cameras synchronized with wireless surface electromyography during a 30-minute run. The first data point was at 3 minutes, using a constant speed of 2.74 meters per second. A second data point was at 30 minutes, using a self-selected pace by the participant to allow for a challenging run until completion at 30 minutes., Main Outcome Measurements: Motion capture was reported as peak kinematic values from heel strike to peak knee flexion for hip adduction and knee adduction. Surface electromyography was reported as a percentage of maximal voluntary contraction for the gluteus maximus, gluteus medius and tensor fascia latae muscles., Results: Injured runners demonstrated increased knee adduction compared with control runners at 30 minutes (P = .002, control = -1.48°, injured = 3.74°). Tensor fasciae latae muscle activation in injured runners was increased compared with control runners at 3 minutes (P = .017, control = 7% maximal voluntary isometric contraction, injured = 11% maximal voluntary isometric contraction)., Conclusion: The results of this study suggest that lateral knee pain in runners localized to the distal iliotibial band is associated with increased knee adduction at 30 minutes. Increased tensor fasciae latae muscle activation at 3 minutes is noted, but more investigation is needed to better understand the clinical meaning. These findings are consistent with but not conclusive evidence supporting the theory that neuromuscular factors of the hip muscles may contribute to increased knee adduction in runners with iliotibial band syndrome. We advise caution using these findings to support treatments intended to modify tensor fasciae latae activation, given the small differences of 4% in muscle activation. Increased knee adduction in runners at 30 minutes was over 5° and beyond the minimal detectable difference. Additional research is needed to confirm whether the degree of knee adduction changes earlier versus later in a run and whether fatigue is a clinically relevant factor., Level of Evidence: III., (Copyright © 2018 American Academy of Physical Medicine and Rehabilitation. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
406. Circadian rhythms are associated with shoot architecture in natural settings.
- Author
-
Rubin MJ, Brock MT, Baker RL, Wilcox S, Anderson K, Davis SJ, and Weinig C
- Subjects
- Arabidopsis genetics, Arabidopsis Proteins genetics, Circadian Rhythm genetics, Flowers anatomy & histology, Flowers physiology, Models, Biological, Mutation, Plant Shoots physiology, RNA-Binding Proteins genetics, Arabidopsis physiology, Circadian Rhythm physiology, Plant Shoots anatomy & histology
- Abstract
Circadian rhythms are key regulators of diverse biological processes under controlled settings. Yet, the phenotypic and fitness consequences of quantitative variation in circadian rhythms remain largely unexplored in the field. As with other pathways, phenotypic characterization of circadian outputs in the field may reveal novel clock functions. Across consecutive growing seasons, we test for associations between clock variation and flowering phenology, plant size, shoot architecture, and fruit set in clock mutants and segregating progenies of Arabidopsis thaliana expressing quantitative variation in circadian rhythms. Using structural equation modeling, we find that genotypic variation in circadian rhythms within a growing season is associated directly with branching, which in turn affects fruit production. Consistent with direct associations between the clock and branching in segregating progenies, cauline branch number is lower and rosette branch number higher in a short-period mutant relative to wild-type and long-period genotypes, independent of flowering time. Differences in branching arise from variation in meristem fate as well as leaf production rate before flowering and attendant increases in meristem number. Our results suggest that clock variation directly affects shoot architecture in the field, suggesting a novel clock function and means by which the clock affects performance., (© 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.)
- Published
- 2018
- Full Text
- View/download PDF
407. Bayesian estimation and use of high-throughput remote sensing indices for quantitative genetic analyses of leaf growth.
- Author
-
Baker RL, Leong WF, An N, Brock MT, Rubin MJ, Welch S, and Weinig C
- Subjects
- Brassica rapa genetics, Chlorophyll analysis, Genotype, Phenotype, Photosynthesis, Bayes Theorem, Brassica rapa growth & development, Plant Leaves growth & development, Remote Sensing Technology
- Abstract
Key Message: We develop Bayesian function-valued trait models that mathematically isolate genetic mechanisms underlying leaf growth trajectories by factoring out genotype-specific differences in photosynthesis. Remote sensing data can be used instead of leaf-level physiological measurements. Characterizing the genetic basis of traits that vary during ontogeny and affect plant performance is a major goal in evolutionary biology and agronomy. Describing genetic programs that specifically regulate morphological traits can be complicated by genotypic differences in physiological traits. We describe the growth trajectories of leaves using novel Bayesian function-valued trait (FVT) modeling approaches in Brassica rapa recombinant inbred lines raised in heterogeneous field settings. While frequentist approaches estimate parameter values by treating each experimental replicate discretely, Bayesian models can utilize information in the global dataset, potentially leading to more robust trait estimation. We illustrate this principle by estimating growth asymptotes in the face of missing data and comparing heritabilities of growth trajectory parameters estimated by Bayesian and frequentist approaches. Using pseudo-Bayes factors, we compare the performance of an initial Bayesian logistic growth model and a model that incorporates carbon assimilation (A
max ) as a cofactor, thus statistically accounting for genotypic differences in carbon resources. We further evaluate two remotely sensed spectroradiometric indices, photochemical reflectance (pri2) and MERIS Terrestrial Chlorophyll Index (mtci) as covariates in lieu of Amax , because these two indices were genetically correlated with Amax across years and treatments yet allow much higher throughput compared to direct leaf-level gas-exchange measurements. For leaf lengths in uncrowded settings, including Amax improves model fit over the initial model. The mtci and pri2 indices also outperform direct Amax measurements. Of particular importance for evolutionary biologists and plant breeders, hierarchical Bayesian models estimating FVT parameters improve heritabilities compared to frequentist approaches.- Published
- 2018
- Full Text
- View/download PDF
408. Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica.
- Author
-
Baker RL, Yarkhunova Y, Vidal K, Ewers BE, and Weinig C
- Subjects
- Brassica anatomy & histology, Brassica growth & development, Brassica physiology, Diploidy, Genome, Plant, Plant Leaves genetics, Plant Leaves growth & development, Plant Leaves physiology, Brassica genetics, Evolution, Molecular, Plant Leaves anatomy & histology, Polyploidy
- Abstract
Background: Polyploidy is well studied from a genetic and genomic perspective, but the morphological, anatomical, and physiological consequences of polyploidy remain relatively uncharacterized. Whether these potential changes bear on functional integration or are idiosyncratic remains an open question. Repeated allotetraploid events and multiple genomic combinations as well as overlapping targets of artificial selection make the Brassica triangle an excellent system for exploring variation in the connection between plant structure (anatomy and morphology) and function (physiology). We examine phenotypic integration among structural aspects of leaves including external morphology and internal anatomy with leaf-level physiology among several species of Brassica. We compare diploid and allotetraploid species to ascertain patterns of phenotypic correlations among structural and functional traits and test the hypothesis that allotetraploidy results in trait disintegration allowing for transgressive phenotypes and additional evolutionary and crop improvement potential., Results: Among six Brassica species, we found significant effects of species and ploidy level for morphological, anatomical and physiological traits. We identified three suites of intercorrelated traits in both diploid parents and allotetraploids: Morphological traits (such as leaf area and perimeter) anatomic traits (including ab- and ad- axial epidermis) and aspects of physiology. In general, there were more correlations between structural and functional traits for allotetraploid hybrids than diploid parents. Parents and hybrids did not have any significant structure-function correlations in common. Of particular note, there were no significant correlations between morphological structure and physiological function in the diploid parents. Increased phenotypic integration in the allotetraploid hybrids may be due, in part, to increased trait ranges or simply different structure-function relationships., Conclusions: Genomic and chromosomal instability in early generation allotetraploids may allow Brassica species to explore new trait space and potentially reach higher adaptive peaks than their progenitor species could, despite temporary fitness costs associated with unstable genomes. The trait correlations that disappear after hybridization as well as the novel trait correlations observed in allotetraploid hybrids may represent relatively evolutionarily labile associations and therefore could be ideal targets for artificial selection and crop improvement.
- Published
- 2017
- Full Text
- View/download PDF
409. Dietary antioxidants enhance immunocompetence in larval amphibians.
- Author
-
Szuroczki D, Koprivnikar J, and Baker RL
- Subjects
- Animal Nutritional Physiological Phenomena, Animals, Immunity, Innate drug effects, Immunity, Innate physiology, Immunocompetence drug effects, Immunocompetence physiology, Larva immunology, Oxidative Stress, Quercetin administration & dosage, Rana pipiens growth & development, Rana pipiens physiology, Vitamin E administration & dosage, beta Carotene administration & dosage, Antioxidants administration & dosage, Diet, Rana pipiens immunology
- Abstract
Dietary antioxidants have been shown to confer a variety of benefits through their ability to counter oxidative stress, including increased immunocompetence and reduced susceptibility to both infectious and non-infectious diseases. However, little is known about the effects of dietary antioxidants on immune function in larval amphibians, a group experiencing worldwide declines driven by factors that likely involve altered immunocompetence. We investigated the effects of dietary antioxidants (quercetin, vitamin E, and β-carotene) on two components of the immune system, as well as development and growth. Lithobates pipiens tadpoles fed diets with supplemental β-carotene or vitamin E exhibited an enhanced swelling response as measured with a phytohemagglutinin assay (PHA), but there was no induced antibody response. Effects were often dose-dependent, with higher antioxidant levels generally conferring stronger swelling that possibly corresponds to the innate immune response. Our results indicate that the antioxidant content of the larval amphibian diets not only had a detectable effect on their immune response capability, but also promoted tadpole growth (mass gain), although developmental stage was not affected. Given that many environmental perturbations may cause oxidative stress or reduce immunocompetence, it is critical to understand how nutrition may counter these effects., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
410. Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa.
- Author
-
Yarkhunova Y, Edwards CE, Ewers BE, Baker RL, Aston TL, McClung CR, Lou P, and Weinig C
- Subjects
- Biomass, Brassica rapa anatomy & histology, Brassica rapa radiation effects, Carbon Dioxide metabolism, Cotyledon physiology, Crops, Agricultural anatomy & histology, Crops, Agricultural radiation effects, Ecotype, Light, Photosynthesis radiation effects, Plant Stomata physiology, Plant Stomata radiation effects, Biodiversity, Biological Evolution, Brassica rapa physiology, Circadian Clocks, Crops, Agricultural physiology
- Abstract
Crop selection often leads to dramatic morphological diversification, in which allocation to the harvestable component increases. Shifts in allocation are predicted to impact (as well as rely on) physiological traits; yet, little is known about the evolution of gas exchange and related anatomical features during crop diversification. In Brassica rapa, we tested for physiological differentiation among three crop morphotypes (leaf, turnip, and oilseed) and for correlated evolution of circadian, gas exchange, and phenological traits. We also examined internal and surficial leaf anatomical features and biochemical limits to photosynthesis. Crop types differed in gas exchange; oilseed varieties had higher net carbon assimilation and stomatal conductance relative to vegetable types. Phylogenetically independent contrasts indicated correlated evolution between circadian traits and both gas exchange and biomass accumulation; shifts to shorter circadian period (closer to 24 h) between phylogenetic nodes are associated with higher stomatal conductance, lower photosynthetic rate (when CO2 supply is factored out), and lower biomass accumulation. Crop type differences in gas exchange are also associated with stomatal density, epidermal thickness, numbers of palisade layers, and biochemical limits to photosynthesis. Brassica crop diversification involves correlated evolution of circadian and physiological traits, which is potentially relevant to understanding mechanistic targets for crop improvement., (© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.)
- Published
- 2016
- Full Text
- View/download PDF
411. Iliotibial Band Syndrome in Runners: Biomechanical Implications and Exercise Interventions.
- Author
-
Baker RL and Fredericson M
- Subjects
- Biomechanical Phenomena, Cumulative Trauma Disorders physiopathology, Humans, Iliotibial Band Syndrome physiopathology, Cumulative Trauma Disorders therapy, Exercise Therapy, Iliotibial Band Syndrome therapy, Running injuries
- Abstract
Iliotibial band syndrome (ITBS) has known biomechanical factors with an unclear explanation based on only strength and flexibility deficits. Neuromuscular coordination has emerged as a likely reason for kinematic faults guiding research toward motor control. This article discusses ITBS in relation to muscle performance factors, fascial considerations, epidemiology, functional anatomy, strength deficits, kinematics, iliotibial strain and strain rate, and biomechanical considerations. Evidence-based exercise approaches are reviewed for ITBS, including related methods used to train the posterior hip muscles., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
412. Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape.
- Author
-
Baker RL, Leong WF, Brock MT, Markelz RJ, Covington MF, Devisetty UK, Edwards CE, Maloof J, Welch S, and Weinig C
- Subjects
- Biomass, Brassica rapa anatomy & histology, Brassica rapa growth & development, Chromosome Mapping, Droughts, Environment, Genes, Plant, Genetic Linkage, Models, Biological, Polymorphism, Single Nucleotide, Sequence Analysis, RNA, Water, Adaptation, Physiological, Brassica rapa genetics, Gene Regulatory Networks, Genotype, Phenotype, Plant Leaves anatomy & histology, Plant Leaves growth & development, Quantitative Trait Loci
- Abstract
Improved predictions of fitness and yield may be obtained by characterizing the genetic controls and environmental dependencies of organismal ontogeny. Elucidating the shape of growth curves may reveal novel genetic controls that single-time-point (STP) analyses do not because, in theory, infinite numbers of growth curves can result in the same final measurement. We measured leaf lengths and widths in Brassica rapa recombinant inbred lines (RILs) throughout ontogeny. We modeled leaf growth and allometry as function valued traits (FVT), and examined genetic correlations between these traits and aspects of phenology, physiology, circadian rhythms and fitness. We used RNA-seq to construct a SNP linkage map and mapped trait quantitative trait loci (QTL). We found genetic trade-offs between leaf size and growth rate FVT and uncovered differences in genotypic and QTL correlations involving FVT vs STPs. We identified leaf shape (allometry) as a genetic module independent of length and width and identified selection on FVT parameters of development. Leaf shape is associated with venation features that affect desiccation resistance. The genetic independence of leaf shape from other leaf traits may therefore enable crop optimization in leaf shape without negative effects on traits such as size, growth rate, duration or gas exchange., (© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.)
- Published
- 2015
- Full Text
- View/download PDF
413. Patterns of shoot architecture in locally adapted populations are linked to intraspecific differences in gene regulation.
- Author
-
Baker RL, Hileman LC, and Diggle PK
- Subjects
- Meristem cytology, Meristem genetics, Meristem growth & development, Meristem ultrastructure, Mimulus anatomy & histology, Mimulus cytology, Models, Biological, Phenotype, Plant Shoots cytology, Plant Shoots ultrastructure, Species Specificity, Adaptation, Physiological genetics, Gene Expression Regulation, Plant, Mimulus genetics, Mimulus physiology, Plant Shoots anatomy & histology, Plant Shoots genetics
- Abstract
• Shoot architecture, including the number and location of branches, is a crucial aspect of plant function, morphological diversification, life history evolution and crop domestication. • Genes controlling shoot architecture are well characterized in, and largely conserved across, model flowering plant species. The role of these genes in the evolution of morphological diversity in natural populations, however, has not been explored. • We identify axillary meristem outgrowth as a primary driver of divergent branch number and life histories in two locally adapted populations of the monkeyflower, Mimulus guttatus. • Furthermore, we show that MORE AXILLARY GROWTH (MAX) gene expression strongly correlates with natural variation in branch outgrowth in this species, linking modification of the MAX-dependent pathway to the evolutionary diversification of shoot architecture., (© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.)
- Published
- 2012
- Full Text
- View/download PDF
414. Node-specific branching and heterochronic changes underlie population-level differences in Mimulus guttatus (Phrymaceae) shoot architecture.
- Author
-
Baker RL and Diggle PK
- Subjects
- Flowers anatomy & histology, Flowers growth & development, Linear Models, Meristem anatomy & histology, Meristem growth & development, Mimulus anatomy & histology, Oregon, Plant Shoots genetics, Population Dynamics, Time Factors, Ecosystem, Mimulus genetics, Mimulus growth & development, Plant Shoots anatomy & histology, Plant Shoots growth & development
- Abstract
Premise of the Study: Shoot architecture is a fundamentally developmental aspect of plant biology with implications for plant form, function, reproduction, and life history evolution. Mimulus guttatus is morphologically diverse and becoming a model for evolutionary biology. Shoot architecture, however, has never been studied from a developmental perspective in M. guttatus., Methods: We examined the development of branches and flowers in plants from two locally adapted populations of M. guttatus with contrasting flowering times, life histories, and branch numbers. We planted second-generation seed in growth chambers to control for maternal and environmental effects., Key Results: Most branches occurred at nodes one and two of the main axis. Onset of branching occurred earlier and at a greater frequency in perennials than in annuals. In perennials, almost all flowers occurred at the fifth or more distal nodes. In annuals, most flowers occurred at the third and more distal nodes. Accessory axillary meristems and higher-order branching did not influence shoot architecture., Conclusions: We found no evidence for trade-offs between flowers and branches because axillary meristem number was not limiting: a large number of meristems remained quiescent. If, however, quiescence is a component of meristem allocation strategy, then meristems may be limited despite presence of quiescent meristems. At the two basalmost nodes, branch number was determined by mechanisms governing either meristem initiation or outgrowth, rather than flowering vs. branching. At the third and more distal nodes, heterochronic processes contributed to flowering time and branch number differences between populations.
- Published
- 2011
- Full Text
- View/download PDF
415. Iliotibial band syndrome: soft tissue and biomechanical factors in evaluation and treatment.
- Author
-
Baker RL, Souza RB, and Fredericson M
- Subjects
- Athletic Injuries diagnosis, Athletic Injuries physiopathology, Athletic Injuries rehabilitation, Biomechanical Phenomena, Humans, Muscle Strength physiology, Iliotibial Band Syndrome diagnosis, Iliotibial Band Syndrome physiopathology, Iliotibial Band Syndrome rehabilitation, Physical Therapy Modalities
- Abstract
Muscle performance factors and altered loading mechanics have been linked to a variety of lower extremity musculoskeletal disorders. In this article, biomechanical risk factors associated with iliotibial band syndrome (ITBS) are described, and a strategy for incorporating these factors into the clinical evaluation of and treatment for that disorder is presented. Abnormal movement patterns in runners and cyclists with ITBS are discussed, and the pathophysiological characteristics of this syndrome are considered in light of prior and current studies in anatomy. Differential diagnoses and the use of imaging, medications, and injections in the treatment of ITBS are reviewed. The roles of hip muscle strength, kinematics, and kinetics are detailed, and the assessment and treatment of muscle performance factors are discussed, with emphasis on identifying and treating movement dysfunction. Various stages of rehabilitation, including strengthening progressions to reduce soft-tissue injury, are described in detail. ITBS is an extremely common orthopedic condition that presents with consistent dysfunctional patterns in muscle performance and movement deviation. Through careful assessment of lower quarter function, the clinician can properly identify individuals and initiate treatment., (Copyright © 2011 American Academy of Physical Medicine and Rehabilitation. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
416. Phase I: creating an electronic prototype to generate equitable hospital nurse-to-patient assignments.
- Author
-
Baker RL, Tindell S, Buckley Behan D, Turpin PG, Rosenberger JM, and Punnakitikashem P
- Subjects
- Hospital Information Systems, Nurse-Patient Relations, Nursing Staff, Hospital, Personnel Staffing and Scheduling, Workload
- Abstract
This pilot program is a software-based prototype providing a nurse-to-patient assignment presented to two groups of RNs enrolled in a nursing research course in a North Texas university. The goal of the pilot program was to obtain input regarding the assessment, functionality, and practicality of a nurse-to-patient electronic prototype. Registered nurse students were given a presurvey, instructions, and details on the use of the prototype, followed by a postsurvey. Prototype speed and lack of bias were reported as most favorable. Registered nurse students requested additions of multiple diagnoses, patient acuity, and experience level of the nurse to enhance the prototype. Seventy-three percent (n = 24) of the participants said that they would use the prototype, and 15% (n = 5) said that they would not.
- Published
- 2010
- Full Text
- View/download PDF
417. Contaminant effects on host-parasite interactions: atrazine, frogs, and trematodes.
- Author
-
Koprivnikar J, Forbes MR, and Baker RL
- Subjects
- Animals, Atrazine toxicity, Host-Parasite Interactions, Ranidae, Trematoda drug effects, Water Pollutants, Chemical toxicity
- Abstract
The effects of contaminants on multispecies interactions can be difficult to predict. The herbicide atrazine is commonly used in North America for corn crops, runs off into wetlands, and has been implicated in the increasing susceptibility of larval frogs to trematode parasites. Using experimental challenges with free-living stages of trematodes (cercariae), it was found that Rana sylvatica tadpoles exposed to 30 microg/L of atrazine had significantly higher intensity of parasitism than did larval frogs either not exposed or exposed to 3 microg/L of atrazine. This result could not be explained by high concentrations of atrazine diminishing antiparasite behavior of tadpoles. Furthermore, when tadpoles and cercariae both were exposed to the same concentration of atrazine, either 3 or 30 microg/L, the abundance of formed cysts was not different from the condition in which both were housed at 0 microg/L of atrazine. Atrazine appears to be debilitating to both free-living cercariae and tadpoles. Studies examining relations between parasitism and contaminant levels must account for such combined effects as well as influences on other interacting species (e.g., first intermediate snail hosts).
- Published
- 2007
- Full Text
- View/download PDF
418. Environmental factors influencing community composition of gastropods and their trematode parasites in southern Ontario.
- Author
-
Koprivnikar J, Baker RL, and Forbes MR
- Subjects
- Agriculture, Animals, Atrazine analysis, Herbicides analysis, Larva parasitology, Ontario, Prevalence, Snails growth & development, Species Specificity, Trematoda classification, Trematoda growth & development, Ecosystem, Fresh Water chemistry, Host-Parasite Interactions, Snails classification, Snails parasitology, Trematoda isolation & purification
- Abstract
Agricultural activity and landscape features have previously been associated with diversity and prevalence of trematode species in amphibian second intermediate hosts. In this study, the density, diversity, and size of snail first intermediate hosts, and the diversity and prevalence of their trematode species, were assessed in 2 types of ponds, i.e., those adjacent to cornfields and those from the same region in southwestern Ontario that were adjacent to nonagricultural settings. Species of trematodes included, but were not restricted to, those that are known parasites of larval and adult frogs. We also assessed landscape factors likely to influence use by definitive hosts. Presence of the herbicide atrazine in ponds was measured to check that ponds adjacent to agriculture had potential to be affected by agricultural runoff. Both snail size and the proportion of snails releasing cercariae were greater in nonagricultural ponds, contrasting with a previous finding of lower trematode infection in tadpoles from nonagricultural ponds. Percentage of forest cover was associated with prevalence of certain trematode species, but not with estimates of combined prevalence. Absence of relations of trematode prevalence to measures of road density also contrasted with previous studies. We interpret our results in light of how agricultural activity might influence trematode viability, snail growth, and use by wildlife definitive hosts, independently of landscape factors.
- Published
- 2007
- Full Text
- View/download PDF
419. Environmental factors influencing trematode prevalence in grey tree frog (Hyla versicolor) tadpoles in southern Ontario.
- Author
-
Koprivnikar J, Baker RL, and Forbes MR
- Subjects
- Analysis of Variance, Animals, Atrazine analysis, Crops, Agricultural, Fresh Water, Herbicides analysis, Host-Parasite Interactions, Larva parasitology, Linear Models, Nitrates analysis, Ontario epidemiology, Prevalence, Trees, Trematode Infections epidemiology, Anura parasitology, Environment, Trematode Infections veterinary
- Abstract
The emergence or increased prevalence of various parasites may be linked to alterations in host-parasite interactions caused by environmental changes. We investigated prevalence of trematode infections in grey tree frog (Hyla versicolor) tadpoles from ponds in nonagricultural settings versus ponds adjacent to cornfields in southern Ontario. We found that agricultural activity was a significant factor in determining the percentage of tadpoles infected by 1 or more trematodes from 1 or more species (combined trematode infection). However, we found no associations between combined trematode infection and forest cover; pond size; road density; and measures of water quality, such as nitrate level and the presence of the herbicide atrazine. Although combined trematode prevalence was associated only with agricultural activity, prevalence of Alaria species showed a positive association with forest cover. This latter result probably reflects the importance of habitat suitability for the canid definitive hosts of this trematode species.
- Published
- 2006
- Full Text
- View/download PDF
420. Effects of atrazine on cercarial longevity, activity, and infectivity.
- Author
-
Koprivnikar J, Forbes MR, and Baker RL
- Subjects
- Analysis of Variance, Animals, Chi-Square Distribution, Echinostoma drug effects, Echinostoma growth & development, Echinostoma pathogenicity, Echinostomiasis parasitology, Echinostomiasis prevention & control, Environmental Exposure, Larva parasitology, Lethal Dose 50, Random Allocation, Trematoda growth & development, Trematoda pathogenicity, Atrazine pharmacology, Echinostomiasis veterinary, Herbicides pharmacology, Ranidae parasitology, Snails parasitology, Trematoda drug effects
- Abstract
Susceptibility of free-living infective stages of parasites to contaminants is relatively understudied compared with independent effects on measures of host health or immunity, but may be important in affecting prevalence and intensity of parasite infections. We investigated whether atrazine, an herbicide commonly used in North America, affected the cercariae of 4 different species of digenetic trematodes, and found that effects of atrazine concentration on mortality and activity of cercariae varied among species. Mortality of Echinostoma trivolvis increased in a 200 microg/L atrazine solution, and a species of Alaria showed both decreased activity and increased mortality. We also examined whether the ability of E. trivolvis to infect the second intermediate host, larval amphibians, was compromised by atrazine exposure. Longevity and prevalence of E. trivolvis cercariae was affected at 200 microg/L atrazine, whereas intensity of infection in Rana clamitans tadpoles was reduced at both 20 microg/L and 200 microg/L atrazine. Our results indicate that the viability of cercariae of some species is compromised by exposure to atrazine, emphasizing the importance of considering the influence of contaminants on free-living stages of parasites in addressing how environmental degradation may relate to host parasitism.
- Published
- 2006
- Full Text
- View/download PDF
421. Estimation of potency of HERG channel blockers: impact of voltage protocol and temperature.
- Author
-
Yao JA, Du X, Lu D, Baker RL, Daharsh E, and Atterson P
- Subjects
- Astemizole adverse effects, Cell Line, Dose-Response Relationship, Drug, Hot Temperature, Humans, Inhibitory Concentration 50, Ketoconazole adverse effects, Pharmaceutical Preparations classification, Piperidines adverse effects, Pyridines adverse effects, Scorpion Venoms adverse effects, Terfenadine adverse effects, Transfection, Drug Evaluation, Preclinical methods, Drug-Related Side Effects and Adverse Reactions, Patch-Clamp Techniques methods, Potassium Channel Blockers adverse effects, Potassium Channels, Voltage-Gated antagonists & inhibitors, Potassium Channels, Voltage-Gated drug effects
- Abstract
Introduction: The HERG channel is widely used for the assessment of proarrhythmic risk for new drugs. HERG channel blockers obstruct channel functions through various mechanisms, which usually show time dependence, voltage dependence, and state dependence. The voltage protocol and temperature may affect the estimation of drug potency, but limited information is available in this regard. The purpose of this study was to evaluate the influence of voltage protocol and temperature on predicting the potency of HERG channel blockers, and to determine electrophysiological approaches for new drugs screening studies., Method: Whole-cell patch-clamp electrophysiology was carried out by utilizing different voltage step protocols to examine the potency of compounds known to preferentially block the channel in the closed (ketoconazole and BeKm-1), open, and/or inactivated states (E-4031, astemizole, and terfenadine) in HEK293 cells transfected with HERG cDNA at room temperature and near-physiological temperature., Results: Drug potency determined using different voltage protocols varied dependent on the mechanisms of drug actions. For most compounds, the IC(50) values obtained with a long pulse step protocol at room temperature were close to those determined with the voltage protocols designed to disclose their intrinsic potency. Relative to room temperature, the potency of E-4031, terfenadine, and ketoconazole was not changed at approximately 35 degrees C, but potency of astemizole was reduced., Discussion: The long pulse step protocol with room temperature can be selected for HERG channel safety screening studies. Alternative voltage protocols or temperatures should be considered if HERG study results are not consistent with other cardiac safety assessments.
- Published
- 2005
- Full Text
- View/download PDF
422. Prognostic value of ambulatory electrocardiography monitoring in patients with dilated cardiomyopathy.
- Author
-
Baker RL and Koelling TM
- Subjects
- Age Factors, Area Under Curve, Cardiac Output, Low physiopathology, Cardiomyopathy, Dilated therapy, Cause of Death, Cohort Studies, Defibrillators, Implantable, Female, Follow-Up Studies, Heart Rate physiology, Humans, Male, Middle Aged, Prognosis, Proportional Hazards Models, ROC Curve, Stroke Volume physiology, Survival Rate, Tachycardia, Ventricular physiopathology, Ventricular Premature Complexes physiopathology, Cardiomyopathy, Dilated physiopathology, Electrocardiography, Ambulatory
- Abstract
Background: Performance of ambulatory electrocardiography (AECG) may provide data useful for counseling patients regarding prognosis and for selecting potential patients for defibrillator implantation, but this practice remains controversial., Methods: We reviewed clinical and AECG data on 355 patients diagnosed with dilated cardiomyopathy (DCM). Predictors of survival were identified in a multivariable analysis using a Cox proportional hazard model. Ability of the derived model to predict outcomes was tested using a second cohort of 144 patients., Results: Nonsustained ventricular tachycardia (NSVT) was present on AECG in 31% of the subjects. Ambulatory electrocardiography provided 3 independent predictors of mortality: NSVT (relative risk [RR], 1.63; 95% confidence interval [CI], 1.06-2.51; P = .02), mean heart rate (RR, 1.03; 95% CI, 1.02-1.04; P = .0001), and heart rate range (RR, 0.990; 95% CI, 0.982-0.997; P = .008). Performance of the multivariable model was validated (area under the curve = 0.83) on a second cohort of patients., Conclusion: Ambulatory electrocardiography provides useful prognostic information in patients with DCM, identifying 3 independent predictors of mortality.
- Published
- 2005
- Full Text
- View/download PDF
423. Condition and fecundity of the damselfly, Enallagma ebrium (Hagen): the importance of ectoparasites.
- Author
-
Forbes MR and Baker RL
- Abstract
The extent, magnitude, and cause of natural covariation between degree of parasitism and other variables known or suspected of influencing host fitness (such as host age or body size) has been understudied. We demonstrate that degree of parasitism by larval water mites (Arrenurus spp.) was associated with reduced condition of males and with lowered fecundity of young females of the damselfly, Enallagma ebrium (Hagen) (Odonata: Coenagrionidae). We also demonstrate that degree of parasitism can covary with both age and size of host damselflies. We explain the putative causes of such natural covariation, and we suggest that degree of parasitism, host age, and host size can all interact to determine damselfly fitness. We expect that natural covariation between the host's phenotype and degree of parasitism will be frequently observed. Studies of such natural covariation will help researchers to assess better the importance of several variables on host reproductive success and to understand better the dynamics of host-parasite interactions.
- Published
- 1991
- Full Text
- View/download PDF
424. Condition and size of damselflies: a field study of food limitation.
- Author
-
Baker RL
- Abstract
Based on evidence from field manipulations, several authors have recently suggested that interference competition among larval odonates reduces individual growth rates and biomass by reducing foraging rates. This study was designed to test the effects of food shortage on "condition" (relative mass per unit head width) of larval Ischnura verticalis (Odonata: Coenagrionidae) under laboratory conditions and to use these results to estimate the degree of food shortage of larvae under naturally occurring field conditions. In the laboratory, there were marked differences in condition of larvae fed diets ranging from ad libitum feeding with worms to ad libitum feeding with Daphnia 1 day out of every 8. Condition of larvae collected from May through October from 17 different sites in southern Ontario indicated that, for most of the year, larvae had conditions similar to those fed ad libitum with Daphnia in the laboratory. There was no evidence that larval condition was related to population density. Condition of larvae in most sites during July was similar to that of larvae fed poor diets in the laboratory. It is unlikely that the low conditions were due to competition as there were no correlations with density across sites and population densities during July were at their lowest. Adult head widths showed a seasonal decline from mid June to the end of the flight season. There was no evidence that head widths were related to population density although there was some evidence that head widths of males were positively related to larval condition. My results do not support the hypothesis that competition is important in affecting foraging rates and subsequent development of larvae. Contrasts between my results and other studies may stem from difficulties with the interpretation of field experiments, that densities in my study may have been low due to fish predation, and/or that I. verticalis larvae are slow moving relative to other larvae and thus less likely to interact.
- Published
- 1989
- Full Text
- View/download PDF
425. Behavioural interactions and use of feeding areas by nymphs of Coenagrion resolutum (Coenagrionidae: Odonata).
- Author
-
Baker RL
- Abstract
Behaviour of Coenagrion resolutum nymphs was studied in the laboratory. Based on characteristics of the behaviour, analysis of the effects of inter-nymph distance on behaviour, and association analysis between behaviours, some of the observed behaviours were classified as grooming, feeding/aggression, retreat, or defense.In an experiment on use of space, some nymphs excluded others from feeding areas through aggressive interactions. Frequency of interactions won by those nymphs seen most often at the feeding site was not associated with location of interactions. However, use of the feeding area was positively associated with dominance status. Exclusion of some nymphs is interpreted as a combination of dominance and limited movement rather than a territorial system.
- Published
- 1981
- Full Text
- View/download PDF
426. Effects of transcutaneous electrical nerve stimulation on myofascial pain and trigger point sensitivity.
- Author
-
Graff-Radford SB, Reeves JL, Baker RL, and Chiu D
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Pain Measurement, Electric Stimulation Therapy, Myofascial Pain Syndromes therapy, Sensory Thresholds, Transcutaneous Electric Nerve Stimulation
- Abstract
The effects of transcutaneous electrical nerve stimulation (TENS) on myofascial pain and trigger point sensitivity were assessed. Four modes of TENS and a no-stimulation control were compared in a double-blind design. Stimulation, carried out for 10 min on 60 subjects (12/group), showed significant pain reductions with 100 Hz, 250 msec stimulation followed by 100 Hz, 50 msec and then pain suppressor TENS. No pain reductions were found in the 2 Hz, 250 msec TENS or the control. No significant alteration in myofascial trigger point sensitivity, assessed with the pressure algometer, was found between the groups. The results suggest that high frequency, high intensity TENS is effective in reducing myofascial pain, and that these pain reductions do not reflect changes in local trigger point sensitivity.
- Published
- 1989
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.