325 results on '"Zheng, Yingye"'
Search Results
302. Discussion
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Raftery, Adrian E, primary and Zheng, Yingye, additional
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- 2003
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303. Statistical Evaluation of Markers and Risk Tools for Prostate Cancer Classification and Prediction.
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Zheng, Yingye and Ankerst, Donna P.
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Adopting novel biomarkers for use in prostate cancer screening requires rigorous scientific evaluation. The predictive accuracy of the markers must be quantified and compared with other potential markers. In this chapter we focus on the statistical approaches commonly used for evaluating biomarkers in the context of early detection for prostate cancer. We cover statistical methods for estimating accuracy summaries for both disease classification and risk prediction, including the true positive fraction (TPF), false positive fraction (FPF), positive predictive value (PPV), negative predictive value (NPV), receiver-operating characteristic (ROC) curve, and predictiveness curve. We also provide methods for combining multiple biomarker tests and comparing biomarkers. An example from the San Antonio Center of Biomarkers Of Risk for Prostate Cancer (SABOR) cohort is used to illustrate these methods. [ABSTRACT FROM AUTHOR]
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- 2009
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304. Use of the American College of Radiology BI-RADS to Report on the Mammographic Evaluation of Women with Signs and Symptoms of Breast Disease
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Geller, Berta M., primary, Barlow, William E., additional, Ballard-Barbash, Rachel, additional, Ernster, Virginia L., additional, Yankaskas, Bonnie C., additional, Sickles, Edward A., additional, Carney, Patricia A., additional, Dignan, Mark B., additional, Rosenberg, Robert D., additional, Urban, Nicole, additional, Zheng, Yingye, additional, and Taplin, Stephen H., additional
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- 2002
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305. Vitamin D intake and lung cancer risk in the Women's Health Initiative.
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Ting-Yuan David Cheng, LaCroix, Andrea Z., Beresford, Shirley A. A., Goodman, Gary E., Thornquist, Mark D., Zheng, Yingye, Chlebowski, Rowan T., Ho, Gloria Y. F., and Neuhouser, Marian L.
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SMOKING ,DIETARY calcium ,CLINICAL trials ,CONFIDENCE intervals ,DIET ,DIETARY supplements ,EPIDEMIOLOGY ,LONGITUDINAL method ,LUNG tumors ,MATHEMATICS ,NUTRITIONAL assessment ,QUESTIONNAIRES ,RESEARCH funding ,STATISTICAL sampling ,STATISTICAL hypothesis testing ,VITAMIN A ,VITAMIN D ,WOMEN'S health ,CALCIUM compounds ,DATA analysis ,RANDOMIZED controlled trials ,PROPORTIONAL hazards models ,BLIND experiment ,POSTMENOPAUSE ,DATA analysis software ,DESCRIPTIVE statistics - Abstract
Background: Prior research suggests that vitamin D protects against lung cancer only among certain subgroups. objectives: We investigated whether vitamin D intake was associated with lung cancer and explored whether vitamin A intake modified the association. Design: Prospective cohort data from 128,779 postmenopausal women, including 1771 incident lung cancers in the Women's Health Initiative (Clinical Trials and Observational Study) 1993-2010, were analyzed. Twelve percent of women received active intervention (1 g C a+4 00 IU vitamin D
3 /d) in the Calcium/Vitamin D Trial. Baseline total intake included both dietary intake (from food-frequency questionnaires) and supplement intake (from bottle labels). HRs were estimated by Cox proportional hazard models. Results: No significant association was observed overall. Among never smokers, a total vitamin D intake ≥400 IU/d was significantly associated with lower risks of lung cancer (HR: 0.37; 95% CI: 0.18, 0.77 for ≥ compared with,100 IU/d; P-trend = 0.01). No significant effect modification of total vitamin A intake on the association between total vitamin D intake and lung cancer was found. However, the Calcium/Vitamin D Trial active intervention was significantly associated with a lower lung cancer risk only among women with a vitamin A intake < 1000 μg/d retinol activity equivalents (HR: 0.69; 95% CI: 0.50, 0.96; P-interaction = 0.09). Conclusions: Vitamin D intake was associated with a lower lung cancer risk in never-smoking, postmenopausal women. Lower vitamin A intake may be important for a beneficial association of 1 g Ca + 400 IU vitamin D3 supplementation with lung cancer. This trial was registered at clinicaltrials.gov as NCT00000611. [ABSTRACT FROM AUTHOR]- Published
- 2013
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306. Two-phase stratified sampling and analysis for predicting binary outcomes.
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Cao, Yaqi, Haneuse, Sebastien, Zheng, Yingye, and Chen, Jinbo
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COST control , *MEDICAL care costs , *ODDS ratio , *PATIENT readmissions , *CARDIAC surgery , *LIKELIHOOD ratio tests , *RESOURCE allocation - Abstract
The two-phase study design is a cost-efficient sampling strategy when certain data elements are expensive and, thus, can only be collected on a sub-sample of subjects. To date guidance on how best to allocate resources within the design has assumed that primary interest lies in estimating association parameters. When primary interest lies in the development and evaluation of a risk prediction tool, however, such guidance may, in fact, be detrimental. To resolve this, we propose a novel strategy for resource allocation based on oversampling cases and subjects who have more extreme risk estimates according to a preliminary model developed using fully observed predictors. Key to the proposed strategy is that it focuses on enhancing efficiency regarding estimation of measures of predictive accuracy, rather than on efficiency regarding association parameters which is the standard paradigm. Towards valid estimation and inference for accuracy measures using the resultant data, we extend an existing semiparametric maximum likelihood ethod for estimating odds ratio association parameters to accommodate the biased sampling scheme and data incompleteness. Motivated by our sampling design, we additionally propose a general post-stratification scheme for analyzing general two-phase data for estimating predictive accuracy measures. Through theoretical calculations and simulation studies, we show that the proposed sampling strategy and post-stratification scheme achieve the promised efficiency improvement. Finally, we apply the proposed methods to develop and evaluate a preliminary model for predicting the risk of hospital readmission after cardiac surgery using data from the Pennsylvania Health Care Cost Containment Council. [ABSTRACT FROM AUTHOR]
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- 2023
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307. Evaluating Prognostic Accuracy of Biomarkers under Competing Risk.
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Zheng, Yingye, Cai, Tianxi, Jin, Yuying, and Feng, Ziding
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PROSTATE cancer prognosis , *BIOMARKERS , *CLINICAL trials , *ESTIMATION theory , *ANALYSIS of covariance , *SURVIVAL analysis (Biometry) , *PREDICTION models - Abstract
To develop more targeted intervention strategies, an important research goal is to identify markers predictive of clinical events. A crucial step toward this goal is to characterize the clinical performance of a marker for predicting different types of events. In this article, we present statistical methods for evaluating the performance of a prognostic marker in predicting multiple competing events. To capture the potential time-varying predictive performance of the marker and incorporate competing risks, we define time- and cause-specific accuracy summaries by stratifying cases based on causes of failure. Such definition would allow one to evaluate the predictive accuracy of a marker for each type of event and compare its predictiveness across event types. Extending the nonparametric crude cause-specific receiver operating characteristics curve estimators by Saha and Heagerty (2010), we develop inference procedures for a range of cause-specific accuracy summaries. To estimate the accuracy measures and assess how covariates may affect the accuracy of a marker under the competing risk setting, we consider two forms of semiparametric models through the cause-specific hazard framework. These approaches enable a flexible modeling of the relationships between the marker and failure times for each cause, while efficiently accommodating additional covariates. We investigate the asymptotic property of the proposed accuracy estimators and demonstrate the finite sample performance of these estimators through simulation studies. The proposed procedures are illustrated with data from a prostate cancer prognostic study. [ABSTRACT FROM AUTHOR]
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- 2012
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308. Determinants of aspirin metabolism in healthy men and women: effects of dietary inducers of UDP-glucuronosyltransferases.
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Navarro, Sandi L., Saracino, Misty R., Makar, Karen W., Thomas, Sushma S., Li, Lin, Zheng, Yingye, Levy, Lisa, Schwarz, Yvonne, Bigler, Jeannette, Potter, John D., and Lampe, Johanna W.
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- 2011
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309. Impact of folic acid fortification on global DNA methylation and one-carbon biomarkers in the Women's Health Initiative Observational Study cohort
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Bae, Sajin, Ulrich, Cornelia M, Bailey, Lynn B, Malysheva, Olga, Brown, Elissa C, Maneval, David R, Neuhouser, Marian L, Cheng, Ting-Yuan David, Miller, Joshua W, Zheng, Yingye, Xiao, Liren, Hou, Lifang, Song, Xiaoling, Buck, Katharina, Beresford, Shirley AA, and Caudill, Marie A
- Abstract
DNA methylation is an epigenetic mechanism that regulates gene expression and can be modified by one-carbon nutrients. The objective of this study was to investigate the impact of folic acid (FA) fortification of the US food supply on leukocyte global DNA methylation and the relationship between DNA methylation, red blood cell (RBC) folate, and other one-carbon biomarkers among postmenopausal women enrolled in the Women's Health Initiative Observational Study. We selected 408 women from the highest and lowest tertiles of RBC folate distribution matching on age and timing of the baseline blood draw, which spanned the pre- (1994–1995), peri- (1996–1997), or post-fortification (1998) periods. Global DNA methylation was assessed by liquid chromatography-tandem mass spectrometry and expressed as a percentage of total cytosine. We observed an interaction (P= 0.02) between fortification period and RBC folate in relation to DNA methylation. Women with higher (vs. lower) RBC folate had higher mean DNA methylation (5.12 vs. 4.99%; P= 0.05) in the pre-fortification period, but lower (4.95 vs. 5.16%; P= 0.03) DNA methylation in the post-fortification period. We also observed significant correlations between one-carbon biomarkers and DNA methylation in the pre-fortification period, but not in the peri- or post-fortification period. The correlation between plasma homocysteine and DNA methylation was reversed from an inverse relationship during the pre-fortification period to a positive relationship during the post-fortification period. Our data suggest that (1) during FA fortification, higher RBC folate status is associated with a reduction in leukocyte global DNA methylation among postmenopausal women and; (2) the relationship between one-carbon biomarkers and global DNA methylation is dependent on folate availability.
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- 2014
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310. Development of a Whole-urine, Multiplexed, Next-generation RNA-sequencing Assay for Early Detection of Aggressive Prostate Cancer
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Cani, Andi K., Hu, Kevin, Liu, Chia-Jen, Siddiqui, Javed, Zheng, Yingye, Han, Sumin, Nallandhighal, Srinivas, Hovelson, Daniel H., Xiao, Lanbo, Pham, Trinh, Eyrich, Nicholas W., Zheng, Heng, Vince, Randy, Tosoian, Jeffrey J., Palapattu, Ganesh S., Morgan, Todd M., Wei, John T., Udager, Aaron M., Chinnaiyan, Arul M., Tomlins, Scott A., and Salami, Simpa S.
- Abstract
Despite biomarker development advances, early detection of aggressive prostate cancer (PCa) remains challenging. We previously developed a clinical-grade urine test (Michigan Prostate Score [MiPS]) for individualized aggressive PCa risk prediction. MiPS combines serum prostate-specific antigen (PSA), the TMPRSS2:ERG(T2:ERG) gene fusion, and PCA3lncRNA in whole urine after digital rectal examination (DRE).
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- 2021
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311. Treatment in the absence of disease reclassification among men on active surveillance for prostate cancer.
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Kirk, Peter S., Zhu, Kehao, Zheng, Yingye, Newcomb, Lisa F., Schenk, Jeannette M., Brooks, James D., Carroll, Peter R., Dash, Atreya, Ellis, William J., Filson, Christopher P., Gleave, Martin E., Liss, Michael, Martin, Frances, McKenney, Jesse K., Morgan, Todd M., Nelson, Peter S., Thompson, Ian M., Wagner, Andrew A., Lin, Daniel W., and Gore, John L.
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WATCHFUL waiting , *PROSTATE cancer , *THERAPEUTICS , *PROSTATE cancer patients , *PROPORTIONAL hazards models , *DISEASE progression - Abstract
Background: Maintaining men on active surveillance for prostate cancer can be challenging. Although most men who eventually undergo treatment have experienced clinical progression, a smaller subset elects treatment in the absence of disease reclassification. This study sought to understand factors associated with treatment in a large, contemporary, prospective cohort. Methods: This study identified 1789 men in the Canary Prostate Cancer Active Surveillance Study cohort enrolled as of 2020 with a median follow‐up of 5.6 years. Clinical and demographic data as well as information on patient‐reported quality of life and urinary symptoms were used in multivariable Cox proportional hazards regression models to identify factors associated with the time to treatment Results: Within 4 years of their diagnosis, 33% of men (95% confidence interval [CI], 30%‐35%) underwent treatment, and 10% (95% CI, 9%‐12%) were treated in the absence of reclassification. The most significant factor associated with any treatment was an increasing Gleason grade group (adjusted hazard ratio [aHR], 14.5; 95% CI, 11.7‐17.9). Urinary quality‐of‐life scores were associated with treatment without reclassification (aHR comparing "mostly dissatisfied/terrible" with "pleased/mixed," 2.65; 95% CI, 1.54‐4.59). In a subset analysis (n = 692), married men, compared with single men, were more likely to undergo treatment in the absence of reclassification (aHR, 2.63; 95% CI, 1.04‐6.66). Conclusions: A substantial number of men with prostate cancer undergo treatment in the absence of clinical changes in their cancers, and quality‐of‐life changes and marital status may be important factors in these decisions. Lay Summary: This analysis of men on active surveillance for prostate cancer shows that approximately 1 in 10 men will decide to be treated within 4 years of their diagnosis even if their cancer is stable.These choices may be related in part to quality‐or‐life or spousal concerns. Some men on active surveillance for prostate cancer will eventually choose to be treated even in the absence of clinical progression of their disease. These decisions may be driven in part by quality‐of‐life concerns or the involvement of spouses. [ABSTRACT FROM AUTHOR]
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- 2022
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312. Revisiting the standard blueprint for biomarker development to address emerging cancer early detection technologies.
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Etzioni, Ruth, Gulati, Roman, Patriotis, Christos, Rutter, Carolyn, Zheng, Yingye, Srivastava, Sudhir, and Feng, Ziding
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EARLY detection of cancer , *MEDICAL screening , *BIOMARKERS , *RESEARCH personnel - Abstract
Novel liquid biopsy technologies are creating a watershed moment in cancer early detection. Evidence supporting population screening is nascent, but a rush to market the new tests is prompting cancer early detection researchers to revisit the standard blueprint that the Early Detection Research Network established to evaluate novel screening biomarkers. In this commentary, we review the Early Detection Research Network's Phases of Biomarker Development (PBD) for rigorous evaluation of novel early detection biomarkers and discuss both hazards and opportunities involved in expedited evaluation. According to the PBD, for a biomarker-based test to be considered for population screening, 1) test sensitivity in a prospective screening setting must be adequate, 2) the shift to early curable stages must be meaningful, and 3) any stage shift must translate into clinically significant mortality benefit. In the past, determining mortality benefit has required lengthy randomized screening trials, but interest is growing in expedited trial designs with shorter-term endpoints. Whether and how best to use such endpoints in a manner that retains the rigor of the PBD remains to be determined. We discuss how computational disease modeling can be harnessed to learn about screening impact and meet the needs of the moment. [ABSTRACT FROM AUTHOR]
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- 2024
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313. Time to Follow-up After Colorectal Cancer Screening by Health Insurance Type.
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Breen, Nancy, Skinner, Celette Sugg, Zheng, Yingye, Inrig, Stephen, Corley, Douglas A, Beaber, Elisabeth F, Garcia, Mike, Chubak, Jessica, Doubeni, Chyke, Quinn, Virginia P, Haas, Jennifer S, Li, Christopher I, Wernli, Karen J, Klabunde, Carrie N, and PROSPR consortium
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Introduction: The purpose of this study was to test the hypothesis that patients with Medicaid insurance or Medicaid-like coverage would have longer times to follow-up and be less likely to complete colonoscopy compared with patients with commercial insurance within the same healthcare systems.Methods: A total of 35,009 patients aged 50-64years with a positive fecal immunochemical test were evaluated in Northern and Southern California Kaiser Permanente systems and in a North Texas safety-net system between 2011 and 2012. Kaplan-Meier estimation was used between 2016 and 2017 to calculate the probability of having follow-up colonoscopy by coverage type. Among Kaiser Permanente patients, Cox regression was used to estimate hazard ratios and 95% CIs for the association between coverage type and receipt of follow-up, adjusting for sociodemographics and health status.Results: Even within the same integrated system with organized follow-up, patients with Medicaid were 24% less likely to complete follow-up as those with commercial insurance. Percentage receiving colonoscopy within 3 months after a positive fecal immunochemical test was 74.6% for commercial insurance, 63.10% for Medicaid only, and 37.5% for patients served by the integrated safety-net system.Conclusions: This study found that patients with Medicaid were less likely than those with commercial insurance to complete follow-up colonoscopy after a positive fecal immunochemical test and had longer average times to follow-up. With the future of coverage mechanisms uncertain, it is important and timely to assess influences of health insurance coverage on likelihood of follow-up colonoscopy and identify potential disparities in screening completion. [ABSTRACT FROM AUTHOR]- Published
- 2019
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314. Development of an Electronic Health Record–Based Algorithm for Predicting Lung Cancer Screening Eligibility in the Population-Based Research to Optimize the Screening Process Lung Research Consortium.
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Burnett-Hartman, Andrea N., Powers, J. David, Hixon, Brian P., Carroll, Nikki M., Frankland, Timothy B., Honda, Stacey A., Saia, Chelsea, Rendle, Katharine A., Greenlee, Robert T., Neslund-Dudas, Christine, Zheng, Yingye, Vachani, Anil, and Ritzwoller, Debra P.
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EARLY detection of cancer , *MEDICAL screening , *LUNG cancer , *CONSORTIA , *LUNGS , *SMOKING cessation - Abstract
PURPOSE: Lung cancer screening (LCS) guidelines in the United States recommend LCS for those age 50-80 years with at least 20 pack-years smoking history who currently smoke or quit within the last 15 years. We tested the performance of simple smoking-related criteria derived from electronic health record (EHR) data and developed and tested the performance of a multivariable model in predicting LCS eligibility. METHODS: Analyses were completed within the Population-based Research to Optimize the Screening Process Lung Consortium (PROSPR-Lung). In our primary validity analyses, the reference standard LCS eligibility was based on self-reported smoking data collected via survey. Within one PROSPR-Lung health system, we used a training data set and penalized multivariable logistic regression using the Least Absolute Shrinkage and Selection Operator to select EHR-based variables into the prediction model including demographics, smoking history, diagnoses, and prescription medications. A separate test data set assessed model performance. We also conducted external validation analysis in a separate health system and reported AUC, sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and accuracy metrics associated with the Youden Index. RESULTS: There were 14,214 individuals with survey data to assess LCS eligibility in primary analyses. The overall performance for assigning LCS eligibility status as measured by the AUC values at the two health systems was 0.940 and 0.938. At the Youden Index cutoff value, performance metrics were as follows: accuracy, 0.855 and 0.895; sensitivity, 0.886 and 0.920; specificity, 0.896 and 0.850; PPV, 0.357 and 0.444; and NPV, 0.988 and 0.992. CONCLUSION: Our results suggest that health systems can use an EHR-derived multivariable prediction model to aid in the identification of those who may be eligible for LCS. This EHR-based algorithm can help health systems employ a population management approach to lung cancer screening. [ABSTRACT FROM AUTHOR]
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- 2023
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315. Dietary Patterns and Risk of Gleason Grade Progression among Men on Active Surveillance for Prostate Cancer: Results from the Canary Prostate Active Surveillance Study.
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Schenk, Jeannette M., Liu, Menghan, Neuhouser, Marian L., Newcomb, Lisa F., Zheng, Yingye, Zhu, Kehao, Brooks, James D., Carroll, Peter R., Dash, Atreya, Ellis, William J., Filson, Christopher P., Gleave, Martin E., Liss, Michael, Martin, Frances M., Morgan, Todd M., Wagner, Andrew A., and Lin, Daniel W.
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PROSTATE physiology , *FOOD habits , *LIFESTYLES , *MEDITERRANEAN diet , *DISEASE progression , *BIOPSY , *CONFIDENCE intervals , *CHRONIC diseases , *HEALTH outcome assessment , *CANCER patients , *DASH diet , *DESCRIPTIVE statistics , *QUESTIONNAIRES , *RESEARCH funding , *PROSTATE-specific antigen , *ODDS ratio , *PROSTATE tumors , *TUMOR grading , *LONGITUDINAL method , *PROPORTIONAL hazards models - Abstract
Modifiable lifestyle factors, such as following a healthy dietary pattern may delay or prevent prostate cancer (PCa) progression. However, few studies have evaluated whether following specific dietary patterns after PCa diagnosis impacts risk of disease progression among men with localized PCa managed by active surveillance (AS). 564 men enrolled in the Canary Prostate Active Surveillance Study, a protocol-driven AS study utilizing a pre-specified prostate-specific antigen monitoring and surveillance biopsy regimen, completed a food frequency questionnaire (FFQ) at enrollment and had ≥ 1 surveillance biopsy during follow-up. FFQs were used to evaluate adherence to the Dietary Guidelines for Americans (Healthy Eating index (HEI))-2015, alternative Mediterranean Diet (aMED), and Dietary Approaches to Stop Hypertension (DASH) dietary patterns. Multivariable-adjusted hazards ratios (HRs) and 95% confidence intervals were estimated using Cox proportional hazards models. During a median follow-up of 7.8 years, 237 men experienced an increase in Gleason score on subsequent biopsy (grade reclassification). Higher HEI-2015, aMED or DASH diet scores after diagnosis were not associated with significant reductions in the risk of grade reclassification during AS. However, these dietary patterns have well-established protective effects on chronic diseases and mortality and remain a prudent choice for men with prostate cancer managed by AS. [ABSTRACT FROM AUTHOR]
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- 2023
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316. Germline mutations in penetrant cancer predisposition genes are rare in men with prostate cancer selecting active surveillance.
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Brady, Lauren, Newcomb, Lisa F., Zhu, Kehao, Zheng, Yingye, Boyer, Hilary, Sarkar, Navonil De, McKenney, Jesse K., Brooks, James D., Carroll, Peter R., Dash, Atreya, Ellis, William J., Filson, Christopher P., Gleave, Martin E., Liss, Michael A., Martin, Frances, Morgan, Todd M., Thompson, Ian M., Wagner, Andrew A., Pritchard, Colin C., and Lin, Daniel W.
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PROSTATE cancer , *CANCER genes , *PROSTATE cancer patients , *WATCHFUL waiting , *GERM cells , *MEDICAL genetics - Abstract
Background: Pathogenic germline mutations in several rare penetrant cancer predisposition genes are associated with an increased risk of aggressive prostate cancer (PC). Our objectives were to determine the prevalence of pathogenic germline mutations in men with low‐risk PC on active surveillance, and assess whether pathogenic germline mutations associate with grade reclassification or adverse pathology, recurrence, or metastases, in men treated after initial surveillance. Methods: Men prospectively enrolled in the Canary Prostate Active Surveillance Study (PASS) were retrospectively sampled for the study. Germline DNA was sequenced utilizing a hereditary cancer gene panel. Mutations were classified according to the American College of Clinical Genetics and Genomics' guidelines. The association of pathogenic germline mutations with grade reclassification and adverse characteristics was evaluated by weighted Cox proportional hazards modeling and conditional logistic regression, respectively. Results: Overall, 29 of 437 (6.6%) study participants harbored a pathogenic germline mutation of which 19 occurred in a gene involved in DNA repair (4.3%). Eight participants (1.8%) had pathogenic germline mutations in three genes associated with aggressive PC: ATM, BRCA1, and BRCA2. The presence of pathogenic germline mutations in DNA repair genes did not associate with adverse characteristics (univariate analysis HR = 0.87, 95% CI: 0.36–2.06, p = 0.7). The carrier rates of pathogenic germline mutations in ATM, BRCA1, and BRCA2did not differ in men with or without grade reclassification (1.9% vs. 1.8%). Conclusion: The frequency of pathogenic germline mutations in penetrant cancer predisposition genes is extremely low in men with PC undergoing active surveillance and pathogenic germline mutations had no apparent association with grade reclassification or adverse characteristics. [ABSTRACT FROM AUTHOR]
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- 2022
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317. Evaluation of Harms Reporting in U.S. Cancer Screening Guidelines.
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Kamineni, Aruna, Doria-Rose, V. Paul, Chubak, Jessica, Inadomi, John M., Corley, Douglas A., Haas, Jennifer S., Kobrin, Sarah C., Winer, Rachel L., Elston Lafata, Jennifer, Beaber, Elisabeth F., Yudkin, Joshua S., Zheng, Yingye, Skinner, Celette Sugg, Schottinger, Joanne E., Ritzwoller, Debra P., Croswell, Jennifer M., and Burnett-Hartman, Andrea N.
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EARLY detection of cancer , *MEDICAL screening , *COLORECTAL cancer , *ACCURACY of information , *INFORMATION measurement , *OLDER men - Abstract
Background: Cancer screening should be recommended only when the balance between benefits and harms is favorable. This review evaluated how U.S. cancer screening guidelines reported harms, within and across organ-specific processes to screen for cancer.Objective: To describe current reporting practices and identify opportunities for improvement.Design: Review of guidelines.Setting: United States.Patients: Patients eligible for screening for breast, cervical, colorectal, lung, or prostate cancer according to U.S. guidelines.Measurements: Information was abstracted on reporting of patient-level harms associated with screening, diagnostic follow-up, and treatment. The authors classified harms reporting as not mentioned, conceptual, qualitative, or quantitative and noted whether literature was cited when harms were described. Frequency of harms reporting was summarized by organ type.Results: Harms reporting was inconsistent across organ types and at each step of the cancer screening process. Guidelines did not report all harms for any specific organ type or for any category of harm across organ types. The most complete harms reporting was for prostate cancer screening guidelines and the least complete for colorectal cancer screening guidelines. Conceptualization of harms and use of quantitative evidence also differed by organ type.Limitations: This review considers only patient-level harms. The authors did not verify accuracy of harms information presented in the guidelines.Conclusion: The review identified opportunities for improving conceptualization, assessment, and reporting of screening process-related harms in guidelines. Future work should consider nuances associated with each organ-specific process to screen for cancer, including which harms are most salient and where evidence gaps exist, and explicitly explore how to optimally weigh available evidence in determining net screening benefit. Improved harms reporting could aid informed decision making, ultimately improving cancer screening delivery.Primary Funding Source: National Cancer Institute. [ABSTRACT FROM AUTHOR]- Published
- 2022
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318. Associations between Genetic Variants and Blood Biomarkers of One-Carbon Metabolism in Postmenopausal Women from the Women's Health Initiative Observational Study.
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Cheng, Ting-Yuan David, Ilozumba, Mmadili N, Balavarca, Yesilda, Neuhouser, Marian L, Miller, Joshua W, Beresford, Shirley A A, Zheng, Yingye, Song, Xiaoling, Duggan, David J, Toriola, Adetunji T, Bailey, Lynn B, Green, Ralph, Caudill, Marie A, and Ulrich, Cornelia M
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CARBON metabolism , *HOMOCYSTEINE , *POSTMENOPAUSE , *GENOTYPES , *TRANSFERASES , *RESEARCH funding , *OXIDOREDUCTASES , *FOLIC acid , *HISTOCOMPATIBILITY antigens , *WOMEN'S health - Abstract
Background: Genetic variation in one-carbon metabolism may affect nutrient concentrations and biological functions. However, data on genetic variants associated with blood biomarkers of one-carbon metabolism in US postmenopausal women are limited, and whether these associations were affected by the nationwide folic acid (FA) fortification program is unclear.Objectives: We investigated associations between genetic variants and biomarkers of one-carbon metabolism using data from the Women's Health Initiative Observational Study.Methods: In 1573 non-Hispanic White (NHW) and 282 Black/African American, American Indian/Alaska Native, Asian/Pacific Islander, and Hispanic/Latino women aged 50-79 y, 288 nonsynonymous and tagging single-nucleotide variants (SNVs) were genotyped. RBC folate, plasma folate, pyridoxal-5'-phosphate (PLP), vitamin B-12, homocysteine, and cysteine concentrations were determined in 12-h fasting blood. Multivariable linear regression tested associations per variant allele and for an aggregated genetic risk score. Effect modifications before, during, and after nationwide FA fortification were examined.Results: After correction for multiple comparisons, among NHW women, 5,10-methylenetetrahydrofolate reductase (MTHFR) rs1801133 (677C→T) variant T was associated with lower plasma folate (-13.0%; 95% CI: -17.3%, -8.6%) and higher plasma homocysteine (3.5%; 95% CI: 1.7%, 5.3%) concentrations. Other associations for nonsynonymous SNVs included DNMT3A rs11695471 (T→A) with plasma PLP; EHMT2 rs535586 (G→A), TCN2 rs1131603 (L349S A→G), and TCN2 rs35838082 (R188W G→A) with plasma vitamin B-12; CBS rs2851391 (G→A) with plasma homocysteine; and MTHFD1 rs2236224 (G→A) and rs2236225 (R653Q G→A) with plasma cysteine. The influence of FA fortification on the associations was limited. Highest compared with lowest quartiles of aggregated genetic risk scores from SNVs in MTHFR and MTRR were associated with 14.8% to 18.9% lower RBC folate concentrations. Gene-biomarker associations were similar in women of other races/ethnicities.Conclusions: Our findings on genetic variants associated with several one-carbon metabolism biomarkers may help elucidate mechanisms of maintaining B vitamin status in postmenopausal women. [ABSTRACT FROM AUTHOR]- Published
- 2022
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319. Association between post-treatment circulating biomarkers of inflammation and survival among stage II-III colorectal cancer patients.
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Hua, Xinwei, Kratz, Mario, Malen, Rachel C., Dai, James Y., Lindström, Sara, Zheng, Yingye, and Newcomb, Polly A.
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C-reactive protein , *INTERLEUKINS , *DISEASE progression , *RESEARCH , *LEPTIN , *RESEARCH methodology , *PROGNOSIS , *CASE-control method , *MEDICAL cooperation , *EVALUATION research , *COLORECTAL cancer , *TUMOR classification , *COMPARATIVE studies , *ADIPONECTIN , *SURVIVAL analysis (Biometry) , *RESEARCH funding , *INFLAMMATORY mediators - Abstract
Background: Biomarker studies on colorectal cancer (CRC) prognosis are limited to pre-diagnostic or pre-operative measures. Post-treatment biomarkers are not well understood for their associations with CRC survival.Methods: We included 306 eligible incident stage II-III CRC cases from the population-based Seattle Colon Cancer Family Registry. Concentrations of C-reactive protein (CRP), interleukin-6 (IL-6), monocyte chemoattractant protein-1 (MCP-1), adiponectin, and leptin were measured using post-treatment plasma samples. Adjusted hazard ratios (HRs) and 95% confidence intervals (CIs) for all-cause and CRC-specific mortality were calculated using Cox proportional hazard models.Results: Elevated levels of CRP, IL-6, MCP-1, and adiponectin were significantly associated with a higher risk of all-cause mortality within 10 years post blood draw with HRs (95% CI) of 1.32 (1.10-2.59), 2.72 (2.07-3.56), 1.97 (1.18-3.28) and 1.71 (1.14-2.58), respectively. IL-6 and adiponectin had a dose-response effect (Ptrend < 0.0001). For CRC-specific mortality, we observed positive associations for CRP (HR = 1.75, 95% CI: 1.2-2.56), IL-6 (HR = 5.02, 95% CI: 2.92-8.59), MCP-1 (HR = 3.78, 95% CI: 1.41-10.08), and adiponectin (HR = 3.16, 95% CI: 1.27-7.86), and inverse association for leptin (HR = 0.44, 95% CI: 0.29-0.68) within the first year of blood draw, whereas the association for IL-6 remained statistically significant over 10 years.Conclusion: Our results support the role of chronic inflammation in CRC progression and suggested several post-treatment inflammatory biomarkers, particularly IL-6, are promising prognostic markers for stage II-III CRC patients. [ABSTRACT FROM AUTHOR]- Published
- 2021
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320. Associations between Plasma Choline Metabolites and Genetic Polymorphisms in One-Carbon Metabolism in Postmenopausal Women: The Women's Health Initiative Observational Study.
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Ilozumba, Mmadili N, Cheng, Ting-Yuan D, Neuhouser, Marian L, Miller, Joshua W, Beresford, Shirley A A, Duggan, David J, Toriola, Adetunji T, Song, Xiaoling, Zheng, Yingye, Bailey, Lynn B, Shadyab, Aladdin H, Liu, Simin, Malysheva, Olga, Caudill, Marie A, and Ulrich, Cornelia M
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POSTMENOPAUSE , *FOLIC acid , *WOMEN'S health , *GENETIC polymorphisms , *SINGLE nucleotide polymorphisms , *CHOLINE , *GENETICS , *CASE-control method , *COLORECTAL cancer , *TRANSFERASES , *GENES , *RESEARCH funding , *OXIDOREDUCTASES - Abstract
Background: Choline plays an integral role in one-carbon metabolism in the body, but it is unclear whether genetic polymorphisms are associated with variations in plasma choline and its metabolites.Objectives: This study aimed to evaluate the association of genetic variants in choline and one-carbon metabolism with plasma choline and its metabolites.Methods: We analyzed data from 1423 postmenopausal women in a case-control study nested within the Women's Health Initiative Observational Study. Plasma concentrations of choline, betaine, dimethylglycine (DMG), and trimethylamine N-oxide were determined in 12-h fasting blood samples collected at baseline (1993-1998). Candidate and tagging single-nucleotide polymorphisms (SNPs) were genotyped in betaine-homocysteine S-methyltransferase (BHMT), BHMT2, 5,10-methylenetetrahydrofolate reductase (MTHFR), methylenetetrahydrofolate dehydrogenase (NADP+ dependent 1) (MTHFD1), 5-methyltetrahydrofolate-homocysteine methyltransferase (MTR), and 5-methyltetrahydrofolate-homocysteine methyltransferase reductase (MTRR). Linear regression was used to derive percentage difference in plasma concentrations per variant allele, adjusting for confounders, including B-vitamin biomarkers. Potential effect modification by plasma vitamin B-12, vitamin B-6, and folate concentrations and folic-acid fortification periods was examined.Results: The candidate SNP BHMT R239Q (rs3733890) was associated with lower concentrations of plasma betaine and DMG concentrations (-4.00% and -6.75% per variant allele, respectively; both nominal P < 0.05). Another candidate SNP, BHMT2 rs626105 A>G, was associated with higher plasma DMG concentration (13.0%; P < 0.0001). Several tagSNPs in these 2 genes were associated with plasma concentrations after correction for multiple comparisons. Vitamin B-12 status was a significant effect modifier of the association between the genetic variant BHMT2 rs626105 A>G and plasma DMG concentration.Conclusions: Genetic variations in metabolic enzymes were associated with plasma concentrations of choline and its metabolites. Our findings contribute to the knowledge on the variation in blood nutrient concentrations in postmenopausal women. [ABSTRACT FROM AUTHOR]- Published
- 2020
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321. Refined Analysis of Prostate-specific Antigen Kinetics to Predict Prostate Cancer Active Surveillance Outcomes.
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Cooperberg, Matthew R., Brooks, James D., Faino, Anna V., Newcomb, Lisa F., Kearns, James T., Carroll, Peter R., Dash, Atreya, Etzioni, Ruth, Fabrizio, Michael D., Gleave, Martin E., Morgan, Todd M., Nelson, Peter S., Thompson, Ian M., Wagner, Andrew A., Lin, Daniel W., and Zheng, Yingye
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PROSTATE-specific antigen , *PROSTATE cancer patients , *BIOPSY , *FOLLOW-up studies (Medicine) , *QUANTITATIVE research - Abstract
Background For men on active surveillance for prostate cancer, utility of prostate-specific antigen (PSA) kinetics (PSAk) in predicting pathologic reclassification remains controversial. Objective To develop prediction methods for utilizing serial PSA and evaluate frequency of collection. Design, setting, and participants Data were collected from men enrolled in the multicenter Canary Prostate Active Surveillance Study, for whom PSA data were measured and biopsies performed on prespecified schedules. We developed a PSAk parameter based on a linear mixed-effect model (LMEM) that accounted for serial PSA levels. Outcome measurements and statistical analysis The association of diagnostic PSA and/or PSAk with time to reclassification (increase in cancer grade and/or volume) was evaluated using multivariable Cox proportional hazards models. Results and limitations A total of 851 men met the study criteria; 255 (30%) had a reclassification event within 5 yr. Median follow-up was 3.7 yr. After adjusting for prostate size, time since diagnosis, biopsy parameters, and diagnostic PSA, PSAk was a significant predictor of reclassification (hazard ratio for each 0.10 increase in PSAk = 1.6 [95% confidence interval 1.2–2.1, p < 0.001]). The PSAk model improved stratification of risk prediction for the top and bottom deciles of risk over a model without PSAk. Model performance was essentially identical using PSA data measured every 6 mo to those measured every 3 mo. The major limitation is the reliability of reclassification as an end point, although it drives most treatment decisions. Conclusions PSAk calculated using an LMEM statistically significantly predicts biopsy reclassification. Models that use repeat PSA measurements outperform a model incorporating only diagnostic PSA. Model performance is similar using PSA assessed every 3 or 6 mo. If validated, these results should inform optimal incorporation of PSA trends into active surveillance protocols and risk calculators. Patient summary In this report, we looked at whether repeat prostate-specific antigen (PSA) measurements, or PSA kinetics, improve prediction of biopsy outcomes in men using active surveillance to manage localized prostate cancer. We found that in a large multicenter active surveillance cohort, PSA kinetics improves the prediction of surveillance biopsy outcome. [ABSTRACT FROM AUTHOR]
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- 2018
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322. Role of Surveillance Biopsy with No Cancer as a Prognostic Marker for Reclassification: Results from the Canary Prostate Active Surveillance Study.
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Kearns, James T., Faino, Anna V., Newcomb, Lisa F., Brooks, James D., Carroll, Peter R., Dash, Atreya, Ellis, William J., Fabrizio, Michael, Gleave, Martin E., Morgan, Todd M., Nelson, Peter S., Thompson, Ian M., Wagner, Andrew A., Zheng, Yingye, and Lin, Daniel W.
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PROSTATE cancer , *NEEDLE biopsy , *PROPORTIONAL hazards models , *KAPLAN-Meier estimator , *CANCER patients - Abstract
Background Many patients who are on active surveillance (AS) for prostate cancer will have surveillance prostate needle biopsies (PNBs) without any cancer evident. Objective To define the association between negative surveillance PNBs and risk of reclassification on AS. Design, setting, and participants All men were enrolled in the Canary Prostate Active Surveillance Study (PASS) between 2008 and 2016. Men were included if they had Gleason ≤3 + 4 prostate cancer and <34% core involvement ratio at diagnosis. Men were prescribed surveillance PNBs at 12 and 24 mo after diagnosis and then every 24 mo. Outcome measurements and statistical analysis Reclassification was defined as an increase in Gleason grade and/or an increase in the ratio of biopsy cores to cancer to ≥34%. PNB outcomes were defined as follows: (1) no cancer on biopsy, (2) cancer without reclassification, or (3) reclassification. Kaplan–Meier and Cox proportional hazard models were performed to assess the risk of reclassification. Results and limitations A total of 657 men met inclusion criteria. On first surveillance PNB, 214 (32%) had no cancer, 282 (43%) had cancer but no reclassification, and 161 (25%) reclassified. Among those who did not reclassify, 313 had a second PNB. On second PNB, 120 (38%) had no cancer, 139 (44%) had cancer but no reclassification, and 54 (17%) reclassified. In a multivariable analysis, significant predictors of decreased future reclassification after the first PNB were no cancer on PNB (hazard ratio [HR] = 0.50, p = 0.008), lower serum prostate-specific antigen, larger prostate size, and lower body mass index. A finding of no cancer on the second PNB was also associated with significantly decreased future reclassification in a multivariable analysis (HR = 0.15, p = 0.003), regardless of the first PNB result. The major limitation of this study is a relatively small number of patients with long-term follow-up. Conclusions Men who have a surveillance PNB with no evidence of cancer are significantly less likely to reclassify on AS in the PASS cohort. These findings have implications for tailoring AS protocols. Patient summary Men on active surveillance for prostate cancer who have a biopsy showing no cancer are at a decreased risk of having worse disease in the future. This may have an impact on how frequently biopsies are required to be performed in the future. [ABSTRACT FROM AUTHOR]
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- 2018
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323. A New Comprehensive Colorectal Cancer Risk Prediction Model Incorporating Family History, Personal Characteristics, and Environmental Factors
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Polly A. Newcomb, Loic Le Marchand, Steven Gallinger, Yingye Zheng, Antonis C. Antoniou, James G. Dowty, Jiayin Zheng, Noralane M. Lindor, Robert J. MacInnis, Aung Ko Win, John L. Hopper, Mark A. Jenkins, John A. Baron, Xinwei Hua, Zheng, Yingye [0000-0002-5559-6847], Win, Aung K [0000-0002-2794-5261], Baron, John A [0000-0003-3461-1056], Antoniou, Antonis C [0000-0001-9223-3116], Zheng, Jiayin [0000-0002-5559-6847], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Oncology ,Adult ,Male ,medicine.medical_specialty ,Epidemiology ,Colorectal cancer ,Population ,Rate ratio ,DNA Mismatch Repair ,Risk Assessment ,Article ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,medicine ,Biomarkers, Tumor ,Cancer Family ,Humans ,Genetic Testing ,Registries ,Family history ,education ,Medical History Taking ,Aged ,education.field_of_study ,business.industry ,Incidence ,Cancer ,Middle Aged ,medicine.disease ,Lynch syndrome ,030104 developmental biology ,ROC Curve ,030220 oncology & carcinogenesis ,Mutation ,Feasibility Studies ,Female ,Risk assessment ,business ,Colorectal Neoplasms ,Follow-Up Studies - Abstract
Purpose: Reducing colorectal cancer incidence and mortality through early detection would improve efficacy if targeted. We developed a colorectal cancer risk prediction model incorporating personal, family, genetic, and environmental risk factors to enhance prevention. Methods: A familial risk profile (FRP) was calculated to summarize individuals' risk based on detailed cancer family history (FH), family structure, probabilities of mutation in major colorectal cancer susceptibility genes, and a polygenic component. We developed risk models, including individuals' FRP or binary colorectal cancer FH, and colorectal cancer risk factors collected at enrollment using population-based colorectal cancer cases (N = 4,445) and controls (N = 3,967) recruited by the Colon Cancer Family Registry Cohort (CCFRC). Model validation used CCFRC follow-up data for population-based (N = 12,052) and clinic-based (N = 5,584) relatives with no cancer history at recruitment to assess model calibration [expected/observed rate ratio (E/O)] and discrimination [area under the receiver-operating-characteristic curve (AUC)]. Results: The E/O [95% confidence interval (CI)] for FRP models for population-based relatives were 1.04 (0.74–1.45) for men and 0.86 (0.64–1.20) for women, and for clinic-based relatives were 1.15 (0.87–1.58) for men and 1.04 (0.76–1.45) for women. The age-adjusted AUCs (95% CI) for FRP models for population-based relatives were 0.69 (0.60–0.78) for men and 0.70 (0.62–0.77) for women, and for clinic-based relatives were 0.77 (0.69–0.84) for men and 0.68 (0.60–0.76) for women. The incremental values of AUC for FRP over FH models for population-based relatives were 0.08 (0.01–0.15) for men and 0.10 (0.04–0.16) for women, and for clinic-based relatives were 0.11 (0.05–0.17) for men and 0.11 (0.06–0.17) for women. Conclusions: Both models calibrated well. The FRP-based model provided better risk stratification and risk discrimination than the FH-based model. Impact: Our findings suggest detailed FH may be useful for targeted risk-based screening and clinical management.
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- 2020
324. Cancer screening in the U.S. through the COVID-19 pandemic, recovery, and beyond.
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Croswell, Jennifer M, Corley, Douglas A, Lafata, Jennifer Elston, Haas, Jennifer S, Inadomi, John M, Kamineni, Aruna, Ritzwoller, Debra P, Vachani, Anil, Zheng, Yingye, and National Cancer Institute Population-based Research to Optimize the Screening Process (PROSPR) II Consortium
- Abstract
COVID-19 has proved enormously disruptive to the provision of cancer screening, which does not just represent an initial test but an entire process, including risk detection, diagnostic follow-up, and treatment. Successful delivery of services at all points in the process has been negatively affected by the pandemic. There is a void in empirical high-quality evidence to support a specific strategy for administering cancer screening during a pandemic and its resolution phase, but several pragmatic considerations can help guide prioritization efforts. Targeting guideline-eligible people who have never been screened, or those who are significantly out of date with screening, has the potential to maximize benefits now and into the future. Disruptions to care due to the pandemic could represent an unparalleled opportunity to reassess early detection programs towards an explicit, thoughtful, and just prioritization of populations historically experiencing cancer disparities. By focusing screening services on populations that have the most to gain, and by careful and deliberate planning for the period following the pandemic, we can positively affect cancer outcomes for all. [ABSTRACT FROM AUTHOR]
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- 2021
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325. Vitamin D intake and lung cancer risk in the Women’s Health Initiative
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Yingye Zheng, Shirley A.A. Beresford, Ting Yuan David Cheng, Andrea Z. LaCroix, Gloria Y.F. Ho, Rowan T. Chlebowski, Marian L. Neuhouser, Mark D. Thornquist, and Gary E. Goodman
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Vitamin ,medicine.medical_specialty ,Lung Neoplasms ,Medicine (miscellaneous) ,Gastroenterology ,Cohort Studies ,chemistry.chemical_compound ,Risk Factors ,Surveys and Questionnaires ,Internal medicine ,medicine ,Vitamin D and neurology ,Humans ,Prospective Studies ,Vitamin D ,Vitamin A ,Lung cancer ,Prospective cohort study ,Aged ,Cancer ,Nutrition and Dietetics ,business.industry ,Women's Health Initiative ,Smoking ,Retinol ,respiratory system ,Middle Aged ,medicine.disease ,respiratory tract diseases ,Diet ,Calcium, Dietary ,Postmenopause ,Endocrinology ,chemistry ,Dietary Supplements ,Women's Health ,Female ,business ,Cholecalciferol ,Cohort study - Abstract
Author(s): Cheng, Ting-Yuan David; Lacroix, Andrea Z; Beresford, Shirley AA; Goodman, Gary E; Thornquist, Mark D; Zheng, Yingye; Chlebowski, Rowan T; Ho, Gloria YF; Neuhouser, Marian L | Abstract: BackgroundPrior research suggests that vitamin D protects against lung cancer only among certain subgroups.ObjectivesWe investigated whether vitamin D intake was associated with lung cancer and explored whether vitamin A intake modified the association.DesignProspective cohort data from 128,779 postmenopausal women, including 1771 incident lung cancers in the Women's Health Initiative (Clinical Trials and Observational Study) 1993-2010, were analyzed. Twelve percent of women received active intervention (1 g Ca + 400 IU vitamin D3/d) in the Calcium/Vitamin D Trial. Baseline total intake included both dietary intake (from food-frequency questionnaires) and supplement intake (from bottle labels). HRs were estimated by Cox proportional hazard models.ResultsNo significant association was observed overall. Among never smokers, a total vitamin D intake ≥400 IU/d was significantly associated with lower risks of lung cancer (HR: 0.37; 95% CI: 0.18, 0.77 for ≥800 compared with l100 IU/d; P-trend = 0.01). No significant effect modification of total vitamin A intake on the association between total vitamin D intake and lung cancer was found. However, the Calcium/Vitamin D Trial active intervention was significantly associated with a lower lung cancer risk only among women with a vitamin A intake l1000 μg/d retinol activity equivalents (HR: 0.69; 95% CI: 0.50, 0.96; P-interaction = 0.09).ConclusionsVitamin D intake was associated with a lower lung cancer risk in never-smoking, postmenopausal women. Lower vitamin A intake may be important for a beneficial association of 1 g Ca + 400 IU vitamin D3 supplementation with lung cancer. This trial was registered at clinicaltrials.gov as NCT00000611.
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- 2013
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