668 results on '"Ming-Jer Tsai"'
Search Results
552. DNase I sensitive domain of the gene coding for the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase
- Author
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Martin C. Alevy, Ming-Jer Tsai, and Bert W. O'Malley
- Subjects
Endodeoxyribonucleases ,Transition (genetics) ,biology ,Base Sequence ,Glyceraldehyde-3-Phosphate Dehydrogenases ,DNA ,DNA Restriction Enzymes ,Oviducts ,Molecular cloning ,Biochemistry ,Molecular biology ,Chromatin ,chemistry.chemical_compound ,chemistry ,Nucleic acid ,biology.protein ,Animals ,Deoxyribonuclease I ,Gene ,Chickens ,Glyceraldehyde 3-phosphate dehydrogenase ,Repetitive Sequences, Nucleic Acid - Abstract
We have cloned a 36-kilobase segment of chicken DNA containing the gene coding for glyceraldehyde-3-phosphate dehydrogenase [GAPDH (EC 1.2.1.12)], a glycolytic enzyme which is expressed constitutively in all cell types. Using defined segments of this cloned DNA as probes, we have determined the DNase I sensitive domain of the GAPDH natural gene in the hen oviduct. When nuclei isolated from hen oviduct were treated with DNase I under conditions known to preferentially degrade actively transcribed genes (i.e., 15-20% of the DNA rendered perchloric acid soluble), a region of approximately 12 kilobase(s) (kb) containing the GAPDH coding sequences and flanking DNA was found to be highly susceptible to digestion by DNase I. Approximately 4 kb downstream from the end of the coding sequences, there was an abrupt transition from the DNase I sensitive or "open" configuration to the resistant or "closed" configuration. The chromatin then remained in a closed conformation for at least 10 kb further downstream. On the 5' side of the gene, the transition from a sensitive to a resistant configuration was located about 4 kb upstream from the gene. In addition, we have localized two repeated sequences in the area of DNA that was cloned. One of these is of the CR1 family of middle repetitive elements. It is located about 18 kb 3' to the gene and as such lies well outside of the DNase I sensitive region which encompasses GAPDH. The other repetitive element is of an uncharacterized family. It is located upstream from the gene and appears to be within a region of transition from the DNase I sensitive to resistant states.
- Published
- 1984
553. THE SYNTHESIS, ISOLATION, AMPLIFICATION AND TRANSCRIPTION OF THE OVALBUMIN GENE
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Larry McReynolds, Savio L. C. Woo, Anthony R. Means, Stephen E. Harris, Ming-Jer Tsai, Sophia Y. Tsai, Bert W. O'Malley, and John J. Monahan
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Base pair ,RNA ,respiratory system ,Biology ,Molecular biology ,Chromatin ,chemistry.chemical_compound ,Ovalbumin ,chemistry ,Transcription (biology) ,Complementary DNA ,biology.protein ,Gene ,DNA - Abstract
RNA was transcribed from chick oviduct chromatin and the concentration of ovalbumin mRNA sequences in the RNA transcripts was measured by hybridization with a radioactive complementary DNA probe synthesized against purified ovalbumin mRNA using viral reverse transcriptase. Ovalbumin mRNA sequences were more abundant in RNAs transcribed from chromatin of estrogen-stimulated chick oviduct than that of chicks withdrawn from hormone. Reconstitution experiments indicated that the nonhistone protein fraction of the estrogen-stimulated chromatin was responsible for maintaining expression of the ovalbumin gene in vitro . In order to study the specific interactions between these regulatory proteins and the ovalbumin gene, we attempted to synthesize, isolate and amplify this gene. Using reverse transcriptase and the complete ovalbumin complementary DNA (cDNA ov ) as a template, a double-stranded DNA (the synthetic ovalbumin gene) was synthesized in vitro . This double-stranded synthetic ovalbumin gene has been successfully incorporated into bacterial plasmids and amplified. By an alternative method designed to obtain DNA sequences adjacent to the coding portion of the ovalbumin gene, we have also purified the natural ovalbumin gene from total chick DNA by affinity chromatography. Using separate columns in which purified ovalbumin mRNA (mRNA ov ) and CDNAOV were covalently linked to phospho-cellulose, the respective complementary ovalbumin DNA strands were enriched about 10, 000-fold from total chick DNA sheared mechanically to a mean length of four to five thousand base pairs. RNA transcribed from these partially purified DNA preparations contained ovalbumin sequences in a much greater concentration than RNA synthesized from total chick DNA.
- Published
- 1976
- Full Text
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554. Performance Limitations on Parameter Estimation of Closely Spaced Optical Targets Using Shot-Noise Detector Model
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Ming-Jer Tsai and Keh-Ping Dunn
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Physics ,business.industry ,Acoustics ,Detector ,Quantum noise ,Shot noise ,Background noise ,symbols.namesake ,Optics ,Signal-to-noise ratio ,Noise generator ,Gaussian noise ,Image noise ,symbols ,ComputerSystemsOrganization_SPECIAL-PURPOSEANDAPPLICATION-BASEDSYSTEMS ,business - Abstract
A mathematical model for passive optical sensors, which takes into account the inherent shot-noise process, is presented. Based on this sensor model, the Cramer-Rao bounds on the variances of intensity and angular location estimates for two closely spaced optical targets are derived. Representative results for the estimation performance degradation due to the interfering targets are shown.
- Published
- 1979
- Full Text
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555. IDENTIFICATION OF PUTATIVE PRECURSORS OF OVALBUMIN AND OVOMUCOID MESSENGER RNAs
- Author
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Dennis R. Roop, Ming-Jer Tsai, Bert W. O'Malley, and Jeffrey L. Nordstrom
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chemistry.chemical_classification ,Messenger RNA ,Hybridization probe ,RNA ,respiratory system ,Ribosomal RNA ,Biology ,Molecular biology ,Ovalbumin ,Biochemistry ,chemistry ,Cytoplasm ,biology.protein ,Nucleotide ,Gene - Abstract
Publisher Summary This chapter explains the identification of putative precursors of ovalbumin and ovomucoid messenger rRNAs. In an experiment described in the chapter, specific DNA probes prepared from structural and intervening sequences within the natural ovalbumin gene were used to identify the precursors of ovalbumin mRNA. Nuclear RNA from hormone-stimulated chick oviducts was electrophoresed under denaturing condition followed by transfer to diazobenzyloxymethyl paper, and hybridization to 32p-DNA probes for structural sequence probes to cytoplasmic RNA gave a single low molecular weight band at the expected size of mature ovalbumin mRNA. Hybridization of the same probe to nuclear RNA demonstrated multiple species of RNA that are higher in molecular weight than mature ovalbumin rRNA. The largest molecule has a molecular weight of more than 8000 nucleotides in length, which could accommodate the entire natural ovalbumin gene sequence. These high-molecular-weight species contain RNA complementary to both structural and intervening sequences of the ovalbumin gene and, thus, appear to represent ovalbumin gene transcripts at various processing stages.
- Published
- 1979
- Full Text
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556. Resolution of Closely Spaced Optical Targets Using Maximum Likelihood Estimator and Maximum Entropy Method: A Comparison Study
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Ming-Jer Tsai
- Subjects
Mathematical optimization ,Monte Carlo method ,Resolution (electron density) ,Maximum entropy method ,Maximum likelihood sequence estimation ,Statistics::Computation ,Computer Science::Other ,Noise ,Computer Science::Emerging Technologies ,Statistics::Methodology ,Point (geometry) ,Sensitivity (control systems) ,Image resolution ,Algorithm ,Mathematics - Abstract
The capabilities of the maximum likelihood estimator (MLE) and the maximum entropy method (MEM) in resolving closely spaced optical point targets are compared using Monte Carlo simulation results for three different examples. It is found that the MEM is very sensitive to the noise and that the MLE performs better than the MEM in all examples.
- Published
- 1981
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557. Effects of estrogen on gene expression in chick oviduct: nuclear receptor levels and initiation of transcription
- Author
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J H Clark, Robert J. Schwartz, M Kalimi, Sophia Y. Tsai, Ming-Jer Tsai, and Bert W. O'Malley
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medicine.medical_specialty ,Time Factors ,Transcription, Genetic ,medicine.drug_class ,Estrogen receptor ,Receptors, Cell Surface ,Oviducts ,Biology ,chemistry.chemical_compound ,Transcription (biology) ,Internal medicine ,RNA polymerase ,Gene expression ,medicine ,Animals ,RNA, Messenger ,Diethylstilbestrol ,Cell Nucleus ,Multidisciplinary ,Binding Sites ,Dose-Response Relationship, Drug ,RNA ,DNA-Directed RNA Polymerases ,Chromatin ,Molecular Weight ,Endocrinology ,chemistry ,Nuclear receptor ,Estrogen ,Female ,Chickens ,Research Article - Abstract
Estrogen (diethylstilbesterol) was administered in vivo to chicks for various time periods. Chromatin was then prepared from oviduct nuclei and assayed for its capacity to support initiation of RNA chain synthesis in vitro in the presence of saturating levels of Escherichia coli RNA polymerase (RNA nucleotidyltransferase; nucleosidetriphosphate:RNA nucleotidyltransferase; EC 2.7.7.6). These same nuclei were also assayed by a [3H]estradiol exchange assay for their endogenous receptor content. The number of available initiation sites for RNA synthesis on chromatin was shown to correlate with the endogenous levels of nuclear estrogen receptor. A decrease in the nuclear concentration of estrogen receptor molecules and the concentration of initiation sites for RNA synthesis occurred during withdrawal of estrogen from previously stimulated chicks. Both parameters declined with a similar half-life. When estrogen was readministered to withdrawn chicks, the number of initiation sites increased 2-fold as early as 30 min and approached a maximal level (3-fold) by 1 hr. During the same period of restimulation with estrogen, the number of estrogen receptor molecules bound to nuclei increased to a maximum at 20 min and then declined at 1 hr to a steady-state level 2-fold higher than the withdrawn chicks. Simultaneous measurements of RNA chain length and RNA chain propagation rate demonstrated that parameters remained relatively constant throughout estrogen withdrawal as well as secondary stimulation. The temporal correlation between changes in the levels of nuclear-bound estrogen receptor and the number of RNA chain initiation sites on chromatin prepared from these same nuclei strongly suggested that the hormone receptor complexes act on chromatin to mediate these changes in genetic transcriptional activity.
- Published
- 1975
558. Identification of potential ovomucoid mRNA precursors in chick oviduct nuclei
- Author
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Jeffrey L. Nordstrom, Bert W. O'Malley, Ming-Jer Tsai, and Dennis R. Roop
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Gel electrophoresis ,Cell Nucleus ,Messenger RNA ,animal structures ,Multidisciplinary ,Rna processing ,Ovalbumin ,Egg Proteins ,RNA ,Nucleic Acid Precursors ,Estrogens ,Oviducts ,Biology ,Primary transcript ,Multiple species ,Ovomucin ,Molecular biology ,Molecular Weight ,Kinetics ,biology.protein ,Oviduct ,Animals ,RNA, Messenger ,Chickens - Abstract
Denaturing gel electrophoresis of chick oviduct nuclear RNA reveals multiple species of RNA that are 1.5–5 times larger than ovomucoid mRNA. By analogy with ovalbumin RNA processing, these data suggest that ovomucoid mRNA is derived from a primary transcript that contains intervening sequences.
- Published
- 1979
559. Structure and Hormonal Regulation of the Ovalbumin Gene Cluster
- Author
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Savio L. C. Woo, Bert W. O'Malley, and Ming-Jer Tsai
- Subjects
Ovalbumin ,Text mining ,biology ,business.industry ,Chemistry ,Gene cluster ,biology.protein ,Computational biology ,business ,Hormone - Published
- 1981
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560. Effect of estrogen on gene expression in chicken oviduct: Evidence for transcriptional control of ovalbumin gene*
- Author
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Ming-Jer Tsai, Bert W. O'Malley, Jeffrey L. Nordstrom, Fritz Kreuzaler, and George E. Swaneck
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Amanitins ,Transcription, Genetic ,Ovalbumin ,Oviducts ,Biology ,Transcription (biology) ,Gene expression ,Transcriptional regulation ,Animals ,RNA, Messenger ,Gene ,Diethylstilbestrol ,Messenger RNA ,Multidisciplinary ,Base Sequence ,RNA ,Nucleic Acid Hybridization ,DNA ,respiratory system ,Molecular biology ,Genes ,biology.protein ,Dactinomycin ,Oviduct ,Female ,Biological Sciences: Biochemistry ,Chickens - Abstract
The transcription of structural and intervening sequences of the chicken ovalbumin gene was studied in nuclei isolated from the oviduct, liver, and spleen of chickens in different states of estrogen simulation. The concentration of transcripts of structural and intervening DNA sequences was determined by hybridizing the newly synthesized [ 3 H]RNA to filters containing cloned ovalbumin cDNA (pOV230) or fragments of the natural ovalbumin gene (pOV2.4 and pOV1.8). Of the RNA synthesized by oviduct nuclei from chickens chronically stimulated with diethylstilbestrol, 0.23% corresponded to ovalbumin mRNA and 0.17% were transcripts of intervening sequences. No detectable ovalbumin mRNA sequences were synthesized by nuclei from spleen and liver. After 60 hr of hormone withdrawal, synthesis of ovalbumin mRNA by oviduct nuclei could not be detected. After readministration of estrogen, a gradual increase in ovalbumin mRNA synthesis was observed which began at 1 hr and reached a plateau by 8 hr. For the intervening sequences, similar kinetics were observed for the initial 4 hr. Previously we had identified multiple species of putative precursors of ovalbumin mRNA in oviduct nuclei from chickens chronically stimulated with diethylstilbestrol. We demonstrate here that withdrawal of diethylstilbestrol resulted in a depletion of high-molecular-weight ovalbumin RNA and of mature ovalbumin mRNA and that readministration of the estrogen induced the nuclear accumulation of both forms of ovalbumin RNA. These findings indicate that: ( i ) a method exists to assay synthesis of hormone-inducible specific eukaryotic [ 3 H]mRNA in vitro; ( ii ) the estrogen-mediated preferential expression of the ovalbumin gene is maintained in isolated oviduct nuclei; ( iii ) after hormone withdrawal, a single injection of diethylstilbestrol induces transcription of ovalbumin structural and intervening sequences, with nuclear accumulation of high-molecular-weight ovalbumin RNA and mature ovalbumin mRNA; and ( iv ) these results are consistent with regulation of ovalbumin mRNA at the level of ovalbumin gene transcription.
- Published
- 1979
561. Multiple protein binding sites within the ovalbumin gene 5'-flanking region: isolation and characterization of sequence-specific binding proteins
- Author
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Ming Jer Tsai, Bert W. O'malley, Sophia Y. Tsai, Martine Pastorcic, and Milan K. Bagchi
- Subjects
Ovalbumin ,5' flanking region ,Molecular Sequence Data ,Oviducts ,Biology ,Binding, Competitive ,Chromatography, Affinity ,Genetics ,Animals ,Deoxyribonuclease I ,Electrophoretic mobility shift assay ,Binding site ,Promoter Regions, Genetic ,Base Sequence ,Binding protein ,DNA ,Molecular biology ,DNA binding site ,DNA-Binding Proteins ,Molecular Weight ,A-site ,Gene Expression Regulation ,Genes ,DNase I hypersensitive site ,Female ,Hypersensitive site ,Chickens ,Protein Binding - Abstract
To understand the molecular basis of the steroid hormone regulated expression of the ovalbumin gene, we sought to identify and isolate nuclear factors from chicken oviduct which interact specifically with the ovalbumin promoter. Using DNase I footprinting and mobility shift assays, we have defined at least four distinct protein binding sites, OV-150, OV-220, OV-250 and OV-330, in the promoter region between -100 to -400. Binding competition and protein fractionation studies revealed the existence of two distinct proteins, each recognizing two promoter sites: Both OV-330 and OV-250 are recognized by one protein factor which is distinct from the one binding to both OV-220 and OV-150. The location of the DNase I footprints coincides with those of in vivo chromatin hypersensitive sites. The OV-330 site is located in a sequence area required for the repression of the gene in the absence of hormone. The factor binding to OV-330 has been substantially purified and renaturation experiments indicate that the binding activity is associated with a polypeptide(s) of Mr 40K.
- Published
- 1989
562. Episomal maintenance of a bovine papilloma virus vector in transgenic mice
- Author
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Francesco J. DeMayo, Ming-Jer Tsai, Bert W. O'Malley, and A. Elbrecht
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Genetically modified mouse ,Male ,Genes, Viral ,Microinjections ,Transgene ,Genetic Vectors ,Mice ,Plasmid ,Transformation, Genetic ,Pregnancy ,Animals ,Vector (molecular biology) ,Molecular Biology ,Microinjection ,Bovine papillomavirus ,Bovine papillomavirus 1 ,Regulation of gene expression ,biology ,Bovine Papillomavirus-1 ,Cell Biology ,biology.organism_classification ,Embryo Transfer ,Virology ,Molecular biology ,Gene Expression Regulation ,Female ,Plasmids ,Research Article - Abstract
We have used a bovine papillomavirus-based vector to generate transgenic mice. Transgenic mice result from either pronuclear or cytoplasmic injections of the vector into fertilized eggs. Of 30 mice generated by microinjection, 27 (90%) contained the vector in its episomal form, at less than one copy per cell. This represents a highly efficient means of gene transfer in which the transgene is in a controlled genetic environment.
- Published
- 1987
563. Regulation of the Rat Insulin II Gene: cis- and trans-acting Factors
- Author
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Young-Ping Hwung, Sophia Y. Tsai, David T. Crowe, Ming-Jer Tsai, and Lee-Ho Wang
- Subjects
geography ,medicine.medical_specialty ,geography.geographical_feature_category ,Insulin ,medicine.medical_treatment ,Metabolism ,Peptide hormone ,Biology ,Islet ,medicine.disease ,Endocrinology ,medicine.anatomical_structure ,Diabetes mellitus ,Internal medicine ,Gene expression ,medicine ,Pancreas ,Gene - Abstract
Insulin is one of the key peptide hormones in the control of growth and metabolism. The imbalance of insulin action results in diabetes mellitus which has broad impact on the society. Aside from its medical importance, the insulin gene is interesting because it is specifically expressed in the β-cells of the islets of Langerhans in the pancreas, and this tissue-specificity is at the transcriptional level. Therefore, the insulin gene serves as a good model system for studies of gene expression.
- Published
- 1989
- Full Text
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564. REGULATION OF GENE EXPRESSION IN CHICK OVIDUCT
- Author
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B.W. O'malley and Ming-Jer Tsai
- Subjects
Regulation of gene expression ,Chemistry ,Oviduct ,Cell biology - Published
- 1977
- Full Text
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565. Track Initiation In A Dense Target Environment Using Multiple Sensors
- Author
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Ming-Jer Tsai, L. C. Youens, and Keh-Ping Dunn
- Subjects
Engineering ,Extended Kalman filter ,Signal processing ,Data processing ,business.industry ,Filter (video) ,Track (disk drive) ,Ballistic missile ,Real-time computing ,Enhanced Data Rates for GSM Evolution ,Observability ,business ,Simulation - Abstract
The problem of track initiation in the exoatmospheric ballistic missile defense scenario has been studied before, assuming a scanning LWIR sensor. This paper is concerned with the same problem, but under a more difficult sensor configuration, namely, a set of mid-altitude satellite sensors. To handle conditions of high target density and poor observability, a new initiation procedure is used for the iterative-least-square (ILS) filter, and the filter itself is modified to accept a-priori state covariance. The target density is effectively reduced by calling upon an edge tracker initially, which forms track files of edges of the clusters. Track initiation is then accomplished by referencing to those edge track files, assuming that targets in the same cluster travel in parallel. Tracks initiated by two sensors are merged to provide precise state estimates to the extended Kalman filter that is used to carry out the track maintenance task.
- Published
- 1989
- Full Text
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566. Identification by exonuclease footprinting of a distal promoter-binding protein from HeLa cell extracts
- Author
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Bert W. O'malley, Ming-Jer Tsai, Alex Elbrecht, and Sophia Y. Tsai
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Exonuclease ,Exonucleases ,Transcription, Genetic ,Ovalbumin ,Biochemistry ,Genetics ,Humans ,Binding site ,Promoter Regions, Genetic ,Molecular Biology ,Gene ,Binding Sites ,biology ,Base Sequence ,Protein footprinting ,Binding protein ,Chromosome Mapping ,Molecular biology ,Footprinting ,Globins ,DNA-Binding Proteins ,Coding strand ,biology.protein ,Female ,DNase footprinting assay ,HeLa Cells - Abstract
Incubation of a HeLa cell fraction termed P1000 with genomic DNA fragments containing portions of the 5'-flanking region of the ovalbumin gene, followed by digestion with exonucleases, shows that this cell fraction contains a protein (or proteins) that binds to the distal promoter of the ovalbumin gene. The protein protects both strands and spans a minimum of 22 bp on the noncoding strand from nucleotides -68 to -90. The 5' border of the protected region on the coding strand is located at nucleotide -81. A similar site on the chick beta-globin gene is also protected by HeLa cell fraction P1000. The exonuclease footprinting methods used to identify the distal promoter-binding protein are more sensitive than the DNaseI footprinting method, and can be used to identify sequence-specific binding proteins in a mixture of DNA binding proteins.
- Published
- 1985
567. Ribonucleic acid precursors are associated with the chick oviduct nuclear matrix
- Author
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Ciejek Em, Ming-Jer Tsai, Bert W. O'Malley, and Nordstrom Jl
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Ovalbumin ,Oviducts ,Ovomucin ,Biochemistry ,medicine ,Animals ,RNA, Messenger ,Cloning, Molecular ,Gel electrophoresis ,Cell Nucleus ,Messenger RNA ,Chemistry ,Hybridization probe ,RNA ,Nucleic Acid Hybridization ,Nucleic Acid Precursors ,Ribosomal RNA ,Nuclear matrix ,Cell nucleus ,medicine.anatomical_structure ,RNA, Ribosomal ,RNA splicing ,Female ,Plasmids - Abstract
Nuclear matrix was prepared by sequential treatment of oviduct nuclei with Triton X-100, DNase I, and 2 M NaCl. Published procedures were modified such that as many steps as possible were performed at -20 degrees C to minimize endogenous ribonuclease activity. Examination of electron micrographs confirmed the isolation of intact nuclear matrix structures. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of the proteins in these structures showed an absence of histones and an enrichment of certain nonhistone proteins. RNA was isolated from the nuclear matrix preparations and subjected to denaturing gel electrophoresis. Gels were analyzed by ethidium bromide staining and by hybridization of Northern blots to cloned DNA probes for ovalbumin, ovomucoid, 5.8S ribosomal RNA, and U1 RNA. All of the precursors to ovalbumin and ovomucoid mRNAs (including various splicing intermediates) and all of the precursors to ribosomal RNA were associated exclusively with the nuclear matrix fraction. By contrast, mature ovalbumin and ovomucoid mRNAs were distributed between matrix and nonmatrix fractions. These observations were further supported by quantitative hybridization analysis of the RNA in nuclear and matrix fractions. It was found that less than 50% of the mature message of intact nuclei was recovered in the matrix, while most significantly, over 95% of the mRNA precursors remained associated with the matrix. Finally, mature ribosomal RNAs and virtually all of the small nuclear RNAs (including U1 RNA) were also distributed between matrix and nonmatrix fractions. Our results suggest that all precursor RNAs (be they precursors to mRNA or rRNA) are exclusively associated with the nuclear matrix and support the notion that the nuclear matrix may be the structural site for RNA processing within the nuclei of eucaryotic cells.
- Published
- 1982
568. Molecular cloning of a steroid-regulated 108K heat shock protein gene from hen oviduct
- Author
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Wanda G. Beattie, Bert W. O'Malley, Ming-Jer Tsai, and Don A. Kleinsek
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Transcription, Genetic ,Oviducts ,Biology ,Exon ,Complementary DNA ,Gene cluster ,Genetics ,Consensus sequence ,Coding region ,Animals ,Cloning, Molecular ,Gene ,Heat-Shock Proteins ,Base Sequence ,Intron ,Nucleotide Mapping ,Nucleic Acid Hybridization ,DNA Restriction Enzymes ,Exons ,Molecular biology ,Introns ,Molecular Weight ,genomic DNA ,Genes ,Female ,Steroids ,Chickens - Abstract
The natural gene for a steroid inducible 108K heat shock protein has been isolated from a lambda genomic library prepared from hen oviduct tissue. Genomic DNA blots indicate that it exists as a single copy gene in the chick oviduct haploid genome. The 9.9 kilobase gene codes for a messenger RNA of 2733bp (21) and is split into 18 exons as established by sequence comparison of cDNA and genomic clones. The 3' end of the gene contains a repetitive element which shares homology with the CR1 family of repeats. The first exon contains both the untranslated leader and coding regions of the gene. The promoter region is rich in G + C residues (70%) and the dinucleotide CG. This 5' flanking segment contains bases similar both in sequence and location to the Goldberg-Hogness TATA homology and consensus sequence CCAAT. A consensus sequence located upstream of steroid hormone responsive chicken genes is found at -267 and on a reverse orientation at -593. The structure of this gene is of interest since the presence of introns in heat shock genes is rare in any species examined to date. Furthermore, this gene lacks the previously described heat shock promoter consensus sequence (C-GAA-TTC-G) present in other species.
- Published
- 1986
569. The Ovalbumin Gene: Organization, Structure, Transcription, and Regulation
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Jeffrey L. Nordstrom, James F. Catterall, Dennis R. Roop, Eugene C. Lai, Bert W. O'Malley, Donald A. Colbert, A. Dugaiczyk, Savio L. C. Woo, Ming-Jer Tsai, and George E. Swaneck
- Subjects
Ovalbumin ,chemistry.chemical_compound ,biology ,chemistry ,Biochemistry ,Cytoplasm ,Transcription (biology) ,Protein subunit ,biology.protein ,RNA ,Gene ,DNA ,Chromatin - Abstract
Publisher Summary This chapter discusses the regulation of expression of the chicken ovalbumin gene by steroid hormones. Upon entering the cell, steroid hormones are initially bound to specific cytoplasmic protein receptors. The hormone–receptor complex undergoes activation and translocates from the cytoplasm into the nucleus. In the nuclear compartment, the hormone–receptor complex binds to acceptor sites on the target cell chromatin. This is followed by the activation of specific genes resulting in the appearance of new species of RNA. The progesterone receptor of chick oviduct is a dimer composed of A and B subunits. This subunit structure has been confirmed by the use of a reversible cross-linking reagent that will cross-link the native dimer. After extraction and partial purification, the dimer can be dissociated, releasing equimolar amounts of the A and B proteins. The A protein has a molecular weight of 79,000, and that of the B protein is 117,000. Evidence indicates that the entire gene of ovalbumin gene is transcribed as a unit into a primary transcript of RNA that appears to be subsequently processed into mature mRNA by the reactions of precise cleavage and ligation. Thus, an abundant amount of intracistronic DNA will never be expressed in the phenotype as proteins. As the cell is under environmental pressure to construct proteins (enzymes) with a particular set of characteristics, the cell could have been encouraged to splice together new polypeptides via the assembly of various segments of DNA into a gene region.
- Published
- 1979
- Full Text
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570. Promoter Specific Activating Domains of the Chicken Progesterone Receptor
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Denise Kettelberger, Ming-Jer Tsai, Bert W. O'Malley, and Orla M. Conneely
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Hormone response element ,chemistry.chemical_classification ,chemistry.chemical_compound ,chemistry ,Progesterone receptor ,Heterologous ,Receptor ,Transcription factor ,Gene ,DNA ,Cell biology ,Amino acid - Abstract
Analysis of the functional properties of two naturally occurring chicken progesterone receptors (cPR) has allowed us to begin to examine the interaction of steroid receptors with transcription factors. The cPR A and B proteins differ by an additional 128 amino acids located at the N-terminus of the B protein. These proteins are functionally distinct in terms of their ability to activate specific traget genes. The N-terminal region of the cPR B protein is an acidic domain which acts as a promoter specific transcriptional regulating domain when transferred to a heterologous receptor. The regulatory function of this domain is independent of the DNA binding specificity of the receptor and appears to reflect modulation of receptor interaction with transcription factors. The estrogen and progesterone receptors appear to interact with common transcription factors. Competition for common transcription factors by these proteins does not require DNA binding.
- Published
- 1989
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571. hsp108,,,,,, a novel heat shock inducible protein of chicken
- Author
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Ming-Jer Tsai, O'Malley Bw, and David R. Sargan
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Progesterone receptor B ,HSPA14 ,HSPA12A ,Hot Temperature ,biology ,Protein subunit ,DNA ,Oviducts ,Saccharomyces cerevisiae ,Biochemistry ,Hsp90 ,HSPA4 ,HSPA1B ,Drosophila melanogaster ,Heat shock protein ,Sequence Homology, Nucleic Acid ,biology.protein ,Animals ,Female ,Cloning, Molecular ,Receptors, Progesterone ,Chickens ,Cells, Cultured ,Heat-Shock Proteins - Abstract
cDNA clones encoding a protein that copurifies with the progesterone receptor B subunit but does not bind progesterone have been described [Kulomaa, M. S., Weigel, N. L., Kleinsek, D. A., Beattie, W. G., Conneely, O. M., March, C., Zarucki-Schulz, T., Schrader, W. T., & O'Malley, B. W. (1986) Biochemistry (preceding paper in this issue)]. A full-length sequence for these clones was derived and was found to encode a protein that is structurally unrelated to the progesterone receptor but that contains significant homologies to the previously described heat shock proteins hsp90 of yeast and hsp83a of Drosophila melanogaster. In this paper it is shown that this protein is indeed a heat shock protein. Though the apparent molecular weight of the protein is 108,000 on sodium dodecyl sulfate-polyacrylamide gels, the molecular weight of the polypeptide backbone is 92,000. The steady-state level of gene transcripts as well as the level of protein is inducible by heat shock, but the gene is constitutively expressed in a number of tissues. A previously undescribed heat shock protein of molecular weight 78,000 in these preparations is also reported.
- Published
- 1986
572. Distribution of RNA transcripts from structural and intervening sequences of the ovalbumin gene
- Author
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Bert W. O'Malley, Ming-Jer Tsai, and Sophia Y. Tsai
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Cell Nucleus ,Messenger RNA ,Cytoplasm ,Multidisciplinary ,Mature messenger RNA ,biology ,Transcription, Genetic ,Ovalbumin ,Hybridization probe ,RNA ,Nucleic Acid Precursors ,Biological Transport ,Oviducts ,In Vitro Techniques ,Molecular biology ,Genes ,Polysome ,Polyribosomes ,biology.protein ,Animals ,RNA, Messenger ,Gene ,Chickens - Abstract
A study was made of the function of the intervening sequences in the ovalbumin gene, Radioactively labeled DNA probes for the intervening sequences were prepared and RNA's were isolated from whole cells, nuclei, and polysomes of estrogen-stimulated chick oviducts. The concentrations of messenger RNA (mRNA) transcripts from ovalbumin structural sequences (mRNAov) and transcripts corresponding to intervening sequences were then estimated by hybridization to cloned DNA probes. Oviduct tissue contains approximately 58,000 molecules of mRNAov sequences per tubular gland cell and most of these sequences are present in the cytoplasm. In contrast, there are 200 to 300 molecules of RNA per cell which are transcribed from the intervening sequences of the natural ovalbumin gene and almost all of these are found in the nucleus. The difference in distribution of structural and intervening sequence transcripts suggests that, unlike mature mRNA, the intervening sequences are not preferentially transported to cytoplasmic polysomes.
- Published
- 1979
573. THE OVOMUCOID GENE ORGANIZATION, STRUCTURE AND REGULATION Supported by NIH grant HD-8188 (B.W.O.), American Cancer Society Research Grant BC-101 and Robert A. Welch Foundation Grant Q-611 (A.R.M.) and American Cancer Society Fellowship PF-1211 (J.P.S.). S.L.C.W. is an Associate Investigator of the Howard Hughes Medical Institute
- Author
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Savio L. C. Woo, Bert W. O'Malley, Ming-Jer Tsai, Joseph P. Stein, Anthony R. Means, and James F. Catterall
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biology ,Structural gene ,Molecular biology ,chemistry.chemical_compound ,Restriction enzyme ,Ovalbumin ,Plasmid ,Restriction map ,chemistry ,Biochemistry ,Complementary DNA ,Gene expression ,biology.protein ,DNA - Abstract
Publisher Summary This chapter focuses on the ovomucoid gene organization, structure, and regulation. The molecular mechanism by which steroid hormones regulate specific gene expression has been an area of acute interest. One attractive model system for studying this hormonal regulation has been the hen oviduct. Administration of estrogen to the newborn chick stimulates oviduct growth and differentiation and results in the appearance of a number of new specific intracellular proteins. The synthesis of one of these proteins, ovalbumin, has been studied. Ovalbumin mRNA has been purified and a full-length dsDNA copy synthesized and cloned in a bacterial plasmid. Moreover, ovalbumin genomic DNA sequences have been isolated from restriction enzyme digests of hen DNA and cloned. The chapter discusses the cloning of the ovomucoid structural gene sequence. It also describes the synthesis and cloning of a complementary DNA copy and identification of an ovomucoid structural gene clone And discusses a partial restriction map of pOM100.
- Published
- 1979
- Full Text
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574. Molecular interactions of steroid hormone receptor with its enhancer element: evidence for receptor dimer formation
- Author
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Jan Carlstedt-Duke, Nancy L. Weigel, Bert W. O'Malley, Karin Dahlman, Sophia Y. Tsai, Jan-Åke Gustafsson, and Ming-Jer Tsai
- Subjects
Hormone response element ,Base Sequence ,Steroid hormone receptor ,Polymers ,Molecular Sequence Data ,Biology ,Molecular biology ,Methylation ,General Biochemistry, Genetics and Molecular Biology ,Rats ,Glucocorticoid receptor ,Enhancer Elements, Genetic ,Receptors, Glucocorticoid ,Nuclear receptor ,Hormone receptor ,Thyrotropin-releasing hormone receptor ,polycyclic compounds ,Nuclear receptor coactivator 2 ,Animals ,Estrogen-related receptor gamma ,Receptors, Progesterone ,Chickens - Abstract
A steroid hormone responsive element (GRE/PRE), sufficient to confer glucocorticoid and progesterone inducibility when linked to a reporter gene, was used in band-shift assays to examine its molecular interactions with steroid hormone receptors. Both progesterone and glucocorticoid receptors bound directly and specifically to the GRE/PRE. The purine contact sites for both form A and form B chicken progesterone receptor, as well as those for rat glucocorticoid receptor, are identical. A peptide fragment produced in bacteria that primarily contain the DNA binding domain of the glucocorticoid receptor binds first to the TGTTCT half-site of the GRE/PRE, and a second molecule binds subsequently to the TGTACA (half-site) of the GRE/PRE in a cooperative manner. Utilizing the peptide fragment and the protein A-linked fragment, we demonstrated that the receptor interacts with its cognate enhancer as a dimer.
- Published
- 1988
575. ELEMENTS REQUIRED FOR INITIATION OF TRANSCRIPTION OF THE OVALBUMIN GENE IN VITRO
- Author
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Sophia Y. Tsai, Bert W. O'Malley, Ming-Jer Tsai, Lawrence E. Kops, and Tanya Z. Schulz
- Subjects
Ovalbumin ,Transcription (biology) ,TAF2 ,biology.protein ,Biology ,Gene ,In vitro ,Cell biology - Published
- 1981
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576. Deoxyribonuclease I sensitivity of the nontranscribed sequences flanking the 5' and 3' ends of the ovomucoid gene and the ovalbumin and its related X and Y genes in hen oviduct nuclei
- Author
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George M. Lawson, Ming-Jer Tsai, and Bert W. O'Malley
- Subjects
Transcription, Genetic ,Ovalbumin ,Oviducts ,Biology ,Ovomucin ,Biochemistry ,Nucleic acid thermodynamics ,Transcription (biology) ,Animals ,Deoxyribonuclease I ,Base sequence ,Gene ,Cell Nucleus ,Deoxyribonucleases ,Base Sequence ,Egg Proteins ,Nucleic Acid Hybridization ,DNA ,Endonucleases ,Molecular biology ,DNA metabolism ,Molecular Weight ,Kinetics ,Genes ,Organ Specificity ,biology.protein ,Oviduct ,Female ,Chickens - Published
- 1980
577. THE ORGANIZATION AND EXPRESSION OF THE NATURAL OVALBUMIN GENE
- Author
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Savio L. C. Woo, Eugene C. Lai, A. Dugaiczyk, Bert W. O'Malley, Dennis R. Roop, Sophia Y. Tsai, and Ming-Jer Tsai
- Subjects
biology ,RNA ,Molecular biology ,law.invention ,Ovalbumin ,Restriction enzyme ,chemistry.chemical_compound ,Restriction map ,chemistry ,law ,Transcription (biology) ,biology.protein ,Recombinant DNA ,Gene ,DNA - Abstract
The sequence organization of the structural ovalbumin gene and flanking sequences in native chick DNA was studied by restriction mapping and filter hybridization using a nick-translated probe generated from p0V230, a recombinant plasmid which contains a full-length ovalbumin DNA synthesized from ovalbumin mRNA. The structural sequences of the ovalbumin gene in native chick DNA were found to be non-contiguous because at least two restriction endonucleases that do not cut the structural sequence do cleave the natural gene into multiple fragments by cleaving within non-structural sequences interspersed between the structural sequences. The observation that all ovalbumin DNA-containing sequences were contained within a single DNA fragment generated by Bam HI digestion of total chick DNA has allowed the construction of an inclusive restriction map of the natural ovalbumin gene which contains at least two “insert sequences”. Both “insert sequences” were located within the peptide-coding regions of the gene and the sizes of these “insert sequences” were estimated to be approximately 1.0 and 1.5 Kb, respectively. The same amazing ovalbumin gene organization is present in chick liver, oviduct and embryonic DNA. Pure single-stranded hybridization probes to each of the separate regions of the ovalbumin gene were prepared and hybridized to total chick DNA and oviduct nuclear RNA. Results indicate that transcription of the separated structural regions are coordinately regulated by estrogen.
- Published
- 1978
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578. Induction of ovalbumin mRNA by estrogen in the chick oviduct
- Author
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George E. Swaneck, Ming-Jer Tsai, and Bert W. O'Malley
- Subjects
medicine.medical_specialty ,animal structures ,Amanitins ,Transcription, Genetic ,medicine.drug_class ,Ovalbumin ,Oviducts ,Biology ,Biochemistry ,Endocrinology ,In vivo ,Internal medicine ,Gene expression ,medicine ,Animals ,RNA, Messenger ,Incubation ,Diethylstilbestrol ,Cell Nucleus ,Messenger RNA ,Estradiol ,Kinetics ,Receptors, Estrogen ,Estrogen ,Protein Biosynthesis ,biology.protein ,Dactinomycin ,Oviduct ,Female ,Chickens ,Hormone - Abstract
To study the induction of mRNA ov in chick oviduct tissue, two experimental designs were developed: oviduct tissue incubated in vitro with hormone, and an in vivo system involving hormone injection into the lumen of anesthetized chicks. The magnitude of hormone response in oviduct tissue suspension was shown to depend on the conditions of the incubation medium and on the previous hormonal treatment of the chicken. When animals were withdrawn from estrogen treatment (48–72 h), restimulation of oviduct minces with 10 −8 M estradiol in vitro induced-rapidly the synthesis of mRNA ov . The rate of synthesis reached its peak in the first two hours of incubation, when approximately 0.2% of the mass of the newly synthesized RNA was mRNA ov . A marked decrease in the level of mRNA ov synthesis and a gradual appearance of a lag period was observed when the estrogen withdrawal time was extended beyond 86 h. A nuclear precursor to ovalbumin mRNA could be shown to be processed into mature mRNA ov in this oviduct tissue suspension system. In vivo experiments were performed in chickens after various intervals of time following hormone withdrawal (2–13 days). Estradiol (10 −8 M) was injected into the oviduct lumen of anesthetized chicks. Within two hours a nearly maximal rate of mRNA ov synthesis was observed. These two systems have proven to be efficient for the assay of the estrogen-mediated induction of mRNA ov synthesis and serve to support the hypothesis that in the chick oviduct system, estrogen regulation of gene expression is primarily at the transcriptional level.
- Published
- 1980
579. The Insulin Gene Promoter.
- Author
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German, Michael, Ashcroft, Stephen, Docherty, Kevin, Edlund, Helena, Edlund, Thomas, Goodison, Steven, Imura, Hiroo, Kennedy, Giulia, Madsen, Ole, Melloul, Danielle, Moss, Larry, Olson, Karl, Permutt, M. Alan, Philippe, Jacques, Robertson, R. Paul, Rutter, William J., Serup, Palle, Stein, Roland, Steiner, Donald, and Ming-Jer Tsai
- Published
- 1995
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580. DNA-Dependent RNA Polymerase from Yeast Mitochondria
- Author
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Richard S. Criddle, Georg Michaelis, and Ming-Jer Tsai
- Subjects
Cell Nucleus ,Mitochondrial DNA ,Multidisciplinary ,biology ,RNA-dependent RNA polymerase ,DNA ,Mitochondrion ,Molecular biology ,Chromatography, DEAE-Cellulose ,Anti-Bacterial Agents ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Transcription (biology) ,RNA polymerase ,biology.protein ,RNA polymerase I ,Biological Sciences: Biochemistry ,Polymerase - Abstract
The DNA-dependent RNA polymerase present in the mitochondria of Saccharomyces cerevisiae has been solubilized using a 0.5 M KCI solution, and the soluble enzyme has been purified. Two forms of mitochondrial enzyme were obtained; they differ in their template specificity and metal-ion dependency. The mitochondrial RNA polymerase also differs from enzyme obtained from the nucleus with respect to antibiotic sensitivity and template specificity. Only the nuclear enzyme is sensitive to α-amanitin inhibition. The relative activities of the isolated nuclear and mitochondrial polymerases toward their homologous DNAs are consistent with their in vivo functions. The possibilities of bacterial- and nuclear-enzyme contamination of the mitochondrial enzyme preparation have been ruled out. RNA polymerase activity in two petite mutants has been studied. Isolated mitochondria from a petite mutant with no detectable mitochondrial DNA has greatly diminished mitochondrial DNA-dependent RNA polymerase activity, while a petite mutant with only a small change in mitochondrial DNA base composition has normal amounts of enzyme.
- Published
- 1971
581. In vitro transcription of mitochondrial deoxyribonucleic acid from yeast
- Author
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Richard S. Criddle, Ming-Jer Tsai, Georg Michaelis, Stephen Douglass, and Kim Burchiel
- Subjects
Cell Nucleus ,Chemistry ,Micropore Filters ,Nucleic Acid Hybridization ,RNA Nucleotidyltransferases ,DNA ,Saccharomyces cerevisiae ,Templates, Genetic ,In vitro transcription ,Tritium ,Biochemistry ,Yeast ,Chromosomes ,Mitochondrial deoxyribonucleic acid ,Mitochondria ,Saccharomyces ,Genes ,Species Specificity ,Genetic Code ,Spectrophotometry ,Mutation ,Escherichia coli ,RNA - Published
- 1972
582. Mitochondrial DNA and suppressiveness of petite mutants in Saccharomyces cerevisiae
- Author
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Georg Michaelis, Stephen Douglass, Richard S. Criddle, and Ming-Jer Tsai
- Subjects
Mitochondrial DNA ,Saccharomyces cerevisiae ,Mutant ,Extrachromosomal Inheritance ,Buoyant density ,Mutagen ,medicine.disease_cause ,Biochemistry ,chemistry.chemical_compound ,Saccharomyces ,Genetics ,medicine ,Centrifugation, Density Gradient ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,biology ,General Medicine ,DNA ,biology.organism_classification ,Molecular biology ,Yeast ,Mitochondria ,Phenanthridines ,Kinetics ,chemistry ,Mutation ,Ethidium bromide ,Function (biology) - Abstract
Ethidium bromide is known to be a powerful mutagen for the induction of cytoplasmically inherited petite mutations in yeast. The effect of ethidium bromide on the degree of suppressiveness of the induced mutants as a function of exposure time is described. The mitochondrial DNA of 20 ethidium bromide-induced petite mutants has been studied to determine its absence or presence and its buoyant density. Ten mutants, in which we were not able to detect any mitochondrial DNA, were neutral petites. The 10 remaining mutants with mitochondrial DNA simultaneously showed a measurable degree of suppressiveness. It was not possible to correlate the buoyant density of the mutant mitochondrial DNA with the degree of suppressiveness.
- Published
- 1970
583. Maximizing submodular set function with connectivity constraint: Theory and application to networks
- Author
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Kate Ching-Ju Lin, Tung-Wei Kuo, and Ming-Jer Tsai
- Subjects
Router ,Computer Networks and Communications ,Wireless network ,business.industry ,Computer science ,Maximum coverage problem ,Distributed computing ,Approximation algorithm ,Computer Science Applications ,Submodular set function ,Set (abstract data type) ,Software deployment ,Algorithm design ,Electrical and Electronic Engineering ,Heuristics ,business ,Software ,Computer network - Abstract
In this paper, we investigate the wireless network deployment problem, which seeks the best deployment of a given limited number of wireless routers. We find that many goals for network deployment, such as maximizing the number of covered users, the size of the coverage area, or the total throughput of the network, can be modeled with a submodular set function. Specifically, given a set of routers, the goal is to find a set of locations $S$ , each of which is equipped with a router, such that $S$ maximizes a predefined submodular set function. However, this deployment problem is more difficult than the traditional maximum submodular set function problem, e.g., the maximum coverage problem, because it requires all the deployed routers to form a connected network. In addition, deploying a router in different locations might consume different costs. To address these challenges, this paper introduces two approximation algorithms, one for homogeneous deployment cost scenarios and the other for heterogeneous deployment cost scenarios. Our simulations, using synthetic data and real traces of census in Taipei, Taiwan, show that the proposed algorithms achieve better performances than other heuristics.
584. Nuclear Orphan Receptor, COUP-TFII, in Reproduction
- Author
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Ming-Jer Tsai, Francesco J. DeMayo, Sophia Y. Tsai, Isao Kurihara, and Dong-Kee Lee
- Subjects
Orphan receptor ,Reproductive Medicine ,media_common.quotation_subject ,Cell Biology ,General Medicine ,Biology ,Reproduction ,COUP-TFII ,Cell biology ,media_common
585. Stress Wave Tomography for the Quantification of Artificial Hole Detection in Camphor Trees (Cinnamomum camphora)
- Author
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林振榮(Cheng-Jung Lin), 張東柱(Tun-Tschu Chang), 阮名揚(Ming-Yang Juan), 林達德(Ta-Te Lin), 曾家琳(Chia-Lin Tseng), YA-NAN WANG, and 蔡明哲(Ming-Jer Tsai)
586. Afforestation and Tending Operations Affecting the Carbon Footprint and Renewable Resources at an Artificial Forest in Taiwan.
- Author
-
Fang-Chih Chang, Chun-Han Ko, and Ming-Jer Tsai
- Abstract
Carbon emissions from afforestation and tending operations were studied in this work. Renewable resources from the operations were evaluated in terms of their potential as fuel. New planting operations were found to result in higher energy consumption, biomass, and emissions compared with the tending operations. The greenhouse gas emissions from new planting and afforestation operations for plantation were 405.0 kg CO2/ha, 50.1 g CH4/ha, and 27.1 g N2O/ha, whereas those from the tending operations were 277.7 kg CO2/ha, 36.3 g CH4/ha, and 19.0 g N2O/ha. The major components of the renewable resources from the afforestation and tending operations were C, O, and H, and the contents of N and S were lower than those specified in the regulations by the European Union for refuse-derived fuels. Therefore, the refuse-derived fuel prepared from the renewable resources of the afforestation and tending operations did not cause NOx or SOx pollution. This fuel resulted in zero CO2 emissions, and it could be used as an alternative fuel for small boilers in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
587. The critical roles of COUP-TFII in tumor progression and metastasis
- Author
-
Ming-Jer Tsai, Sophia Y. Tsai, and Jun Qin
- Subjects
0303 health sciences ,Tumor microenvironment ,Thyroid hormone receptor ,Angiogenesis ,Chicken ovalbumin upstream promoter-transcription factor ,Review ,Biology ,medicine.disease_cause ,Bioinformatics ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,3. Good health ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Tumor progression ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,Carcinogenesis ,COUP-TFII ,030304 developmental biology - Abstract
Chicken ovalbumin upstream promoter transcription factor II (COUP-TFII) belongs to the steroid/thyroid hormone receptor superfamily. Extensive evidence has indicated that COUP-TFII plays a critical and indispensable role in cell-fate specification, organogenesis, angiogenesis, and metabolism as well as in a variety of diseases. Recent studies obtained from genetically engineered mouse models (GEM) and patient specimen analysis indicate that COUP-TFII is also important for tumor progression and metastasis. In this article, we will comprehensively review the oncogenic roles of COUP-TFII within the tumor microenvironment and tumor cells and delineate the mechanism by which COUP-TFII contributes to tumorigenesis. The applicability of current data to our understanding of the role of COUP-TFII in cancer and the potential therapeutic implications will also be discussed.
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588. Essential role of COUP-TFII in vascular formation.
- Author
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Ming-Jer Tsai, Li-Ru You, Fu-Jung Lin, and Tsai, Sophia Y.
- Subjects
- *
TRANSCRIPTION factors , *NUCLEAR receptors (Biochemistry) , *CELL receptors , *MORPHOGENESIS , *NEOVASCULARIZATION , *ENDOTHELIUM - Abstract
Chicken ovalbumin upstream promoter-transcription factor II ( COUP-TFII) is a member of the orphan nuclear receptor superfamily. The spatiotemporal expression pattern of COUP-TFII suggests that it participates in mesenchymal-epithelial interactions required for organogenesis. The null mutants of COUP-TFII die around embryonic (E) day E10 due to defects in angiogenesis and heart formation. To further understand the biologic functions of COUP-TFII during development, LacZ knockin mice and floxed COUP-TFII mice were generated. 5-bomo-4-chloro-3-indolyl-β-D-galactopyranoside (X-gal) staining of COUP-TFII–LacZ knockin mice shows high COUP-TFII expression in the endothelium of the vein but not in the artery. In contrast, COUP-TFII is highly expressed in the smooth muscle layer surrounding the artery. This differential expression pattern suggests that COUP-TFII may play a role in establishing arterial-venous identity. To further elucidate the functional role of COUP-TFII in the formation of endothelium of the vein, COUP-TFII was specifically knocked out in the endothelium using Tie-2 Cre mice. In mutant mice lacking COUP-TFII in the endothelium, the vein acquires arterial characteristics and ectopic expression of Notch signal pathway. In addition, NP-1, an upstream regulator of Notch signaling, is also up-regulated. Finally, ectopic formation of hematopieitic cell clusters (HCC) is observed in the mutant veins. Our results are consistent with the notion that cell fate determination of the vein is under genetic control rather than deriving from a default pathway as proposed previously. In addition, COUP-TFII is the first transcription factor identified that specifically marks the endothelium of the vein. Understanding the role of COUP-TFII during the vasculature development will provide insights into the molecular mechanism for the establishment of arterial-venous identity. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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- View/download PDF
589. Dynamical construction of a core-based group-shared multicast tree in mobile ad hoc networks.
- Author
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Bing-Hong Liu, Ming-Jer Tsai, and Wei-Chei Ko
- Published
- 2005
- Full Text
- View/download PDF
590. REGγ modulates p53 activity by regulating its cellular localization.
- Author
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Jian Liu, Guowu Yu, Yanyan Zhao, Dengpan Zhao, Ying Wang, Lu Wang, Jiang Liu, Lei Li, Yu Zeng, Yongyan Dang, Chuangui Wang, Guang Gao, Weiwen Long, Lonard, David M., Shanlou Qiao, Ming-Jer Tsai, Bianhong Zhang, Honglin Luo, and Xiaotao Li
- Subjects
CANCER cells ,CELLULAR control mechanisms ,APOPTOSIS ,CELL death ,PROTEIN analysis ,GENETICS - Abstract
The proteasome activator REGγ mediates a shortcut for the destruction of intact mammalian proteins. The biological roles of REGγ and the underlying mechanisms are not fully understood. Here we provide evidence that REGγ regulates cellular distribution of p53 by facilitating its multiple monoubiquitylation and subsequent nuclear export and degradation. We also show that inhibition of p53 tetramerization by REGγ might further enhance cytoplasmic relocation of p53 and reduce active p53 in the nucleus. Furthermore, multiple monoubiquitylation of p53 enhances its physical interaction with HDM2 and probably facilitates subsequent polyubiquitylation of p53, suggesting that monoubiquitylation can act as a signal for p53 degradation. Depletion of REGγ sensitizes cells to stress-induced apoptosis, validating its crucial role in the control of apoptosis, probably through regulation of p53 function. Using a mouse xenograft model, we show that REGγ knockdown results in a significant reduction of tumor growth, suggesting an important role for REGγ in tumor development. Our study therefore demonstrates that REG-mediated inactivation of p53 is one of the mechanisms involved in cancer progression. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
591. Specific Amino Acid Residues in the Basic Helix-Loop-Helix Domain of SRC-3 Are Essential for Its Nuclear Localization and Proteasome-Dependent Turnover.
- Author
-
Chao Li, Ray-Chang Wu, Amazit, Larbi, Tsai, Sophia Y., Ming-Jer Tsai, and O'Malley, Bert W.
- Subjects
GENETIC transcription ,ESTROGEN ,CELL nuclei ,CYTOPLASM ,SIMIAN viruses - Abstract
SRC-3/AIB1/ACTR/pCIP/RAC3/TRAM-1 is a primary transcriptional coactivator for the estrogen receptor. Here we report that deletion of the SRC-3 basic helix-loop-helix (bHLH) domain blocks its proteasome-dependent turnover. We further identified two residues (K17 and R18) in the SRC-3 bHLH domain that are essential for its stability. Moreover, we found that the bHLH domain contains a bipartite nuclear localization signal (NLS). SRC-3 NLS mutants block its translocation into the nucleus, and this correlates with its insensitivity to proteasome-dependent turnover. SRC-3 shows a time-dependent decay in the presence of cycloheximide which is not apparent for the cytoplasmic mutant. Fusion of a simian virus 40 T antigen NLS to the cytoplasmic localized SRC-3 mutant drives it back into the nucleus and restores its proteasomal sensitivity. In addition, the cytoplasmic mutants are inactive for transcriptional coactivation and cancer cell growth. Taken together, our data indicate that proteasome-dependent turnover of SRC-3 occurs in the nucleus and that two amino acid residues in the bHLH domain provide a signal for its nuclear localization and proteasome-dependent degradation as well as for regulation of SRC-3 transcriptional coactivator capacity. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
592. COUP-TFII regulates satellite cell function and muscular dystrophy.
- Author
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Xin Xie, Tsai, Sophia Y., Ming-Jer Tsai, Xie, Xin, and Tsai, Ming-Jer
- Subjects
- *
MUSCULAR dystrophy , *DUCHENNE muscular dystrophy , *CELL physiology , *SARCOPENIA , *SATELLITE cells , *STEM cells , *SKELETAL muscle physiology , *ANIMALS , *CELL culture , *MICE , *MUSCULOSKELETAL system , *PROTEINS , *REGENERATION (Biology) , *SKELETAL muscle , *PHYSIOLOGY - Abstract
Duchenne muscular dystrophy (DMD) is a severe and progressive muscle-wasting disease caused by mutations in the dystrophin gene. Although dystrophin deficiency in myofiber triggers the disease's pathological changes, the degree of satellite cell (SC) dysfunction defines disease progression. Here, we have identified chicken ovalbumin upstream promoter-transcription factor II (COUP-TFII) hyperactivity as a contributing factor underlying muscular dystrophy in a dystrophin-deficient murine model of DMD. Ectopic expression of COUP-TFII in murine SCs led to Duchenne-like dystrophy in the muscles of control animals and exacerbated degenerative myopathies in dystrophin-deficient mice. COUP-TFII-overexpressing mice exhibited regenerative failure that was attributed to deficient SC proliferation and myoblast fusion. Mechanistically, we determined that COUP-TFII coordinated a regenerative program through combined regulation of multiple promyogenic factors. Furthermore, inhibition of COUP-TFII preserved SC function and counteracted the muscle weakness associated with Duchenne-like dystrophy in the murine model, suggesting that targeting COUP-TFII is a potential treatment for DMD. Together, our findings reveal a regulatory role of COUP-TFII in the development of muscular dystrophy and open up a potential therapeutic opportunity for managing disease progression in patients with DMD. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
593. Adsorption capacity and removal efficiency of heavy metal ions by Moso and Ma bamboo activated carbons.
- Author
-
Sheng-Fong Lo, Song-Yung Wang, Ming-Jer Tsai, and Lang-Dong Lin
- Subjects
- *
ADSORPTION (Chemistry) , *METAL ions , *ACTIVATED carbon , *HYDROGEN-ion concentration , *SURFACE area , *MICROSTRUCTURE - Abstract
In order to understand the adsorption capacity and removal efficiency of heavy metal ions by Moso and Ma bamboo activated carbons, the carbon yield, specific surface area, micropore area, zeta potential, and the effects of pH value, soaking time and dosage of bamboo activated carbon were investigated in this study. In comparison with once activated bamboo carbons, lower carbon yields, larger specific surface area and micropore volume were found for the twice-activated bamboo carbons. The optimum pH values for adsorption capacity and removal efficiency of heavy metal ions were 5.81-7.86 and 7.10-9.82 by Moso and Ma bamboo activated carbons, respectively. The optimum soaking time was 2-4 h for Pb2+, 4-8 h for Cu2+ and Cd2+, and 4 h for Crs3+ by Moso bamboo activated carbons, and 1 h for the tested heavy metal ions by Ma bamboo activated carbons. The adsorption capacity and removal efficiency of heavy metal ions of the various bamboo activated carbons decreased in the order: twice-activated Ma bamboo carbons > once-activated Ma bamboo carbons > twice-activated Moso bamboo carbons > once-activated Moso bamboo carbons. The Ma bamboo activated carbons had a lower zeta potential and effectively attracted positively charged metal ions. The removal efficiency of heavy metal ions by the various bamboo activated carbons decreased in the order: Pb2+ > Cu2+ > Crs3+ >. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
594. Small-molecule inhibitor targeting orphan nuclear receptor COUP-TFII for prostate cancer treatment.
- Author
-
Leiming Wang, Chiang-Min Cheng, Jun Qin, Mafei Xu, Chung-Yang Kao, Jingjing Shi, You, Erli, Wanchun Gong, Rosa, Laura Pedro, Chase, Peter, Scampavia, Louis, Madoux, Franck, Spicer, Timothy, Hodder, Peter, Xu, H. Eric, Tsai, Sophia Y., and Ming-Jer Tsai
- Subjects
- *
NUCLEAR receptors (Biochemistry) , *PEROXISOME proliferator-activated receptors , *PROSTATE cancer , *CANCER treatment , *CYTOLOGY , *RETINOID X receptors , *ORPHANS - Abstract
The article discusses a study on small-molecule inhibitor targeting orphan nuclear receptor chicken ovalbumin upstream promoter–transcription factor II (COUP-TFI) for prostate cancer treatment. It mentions that through blocking COUP-TFII's oncogenic activity in prostate cancer, the inhibitor efficiently exerted a potent antitumor effect in xenograft mouse models and patient-derived xenograft models.
- Published
- 2020
- Full Text
- View/download PDF
595. Nuclear receptors regulate alternative lengthening of telomeres through a novel noncanonical FANCD2 pathway.
- Author
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Mafei Xu, Jun Qin, Leiming Wang, Hui-Ju Lee, Chung-Yang Kao, Dan Liu, Zhou Songyang, Junjie Chen, Ming-Jer Tsai, and Tsai, Sophia Y.
- Published
- 2019
- Full Text
- View/download PDF
596. Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation.
- Author
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Gates, Leah A., Jiejun Shi, Rohira, Aarti D., Qin Feng, Bokai Zhu, Bedford, Mark T., Sagum, Cari A., Sung Yun Jung, Jun Qin, Ming-Jer Tsai, Tsai, Sophia Y., Wei Li, Foulds, Charles E., and O'Malley, Bert W.
- Subjects
- *
ACETYLATION , *HISTONES , *ELONGATION factors (Biochemistry) , *GENETIC transcription , *CHROMATIN - Abstract
The transition from transcription initiation to elongation is a key regulatory step in gene expression, which requires RNA polymerase II (pol II) to escape promoter proximal pausing on chromatin. Although elongation factors promote pause release leading to transcription elongation, the role of epigenetic modifications during this critical transition step is poorly understood. Two histone marks on histone H3, lysine 4 trimethylation (H3K4me3) and lysine 9 acetylation (H3K9ac), co-localize on active gene promoters and are associated with active transcription. H3K4me3 can promote transcription initiation, yet the functional role of H3K9ac is much less understood. We hypothesized that H3K9ac may function downstream of transcription initiation by recruiting proteins important for the next step of transcription. Here, we describe a functional role for H3K9ac in promoting pol II pause release by directly recruiting the super elongation complex (SEC) to chromatin. H3K9ac serves as a substrate for direct binding of the SEC, as does acetylation of histone H4 lysine 5 to a lesser extent. Furthermore, lysine 9 on histone H3 is necessary for maximal pol II pause release through SEC action, and loss of H3K9ac increases the pol II pausing index on a subset of genes in HeLa cells. At select gene promoters, H3K9ac loss or SEC depletion reduces gene expression and increases paused pol II occupancy.Wetherefore propose that an ordered histone code can promote progression through the transcription cycle, providing new mechanistic insight indicating that SEC recruitment to certain acetylated histones on a subset of genes stimulates the subsequent release of paused pol II needed for transcription elongation. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
597. Chicken Ovalbumin Upstream Promoter Transcription Factor II Regulates Renin Gene Expression.
- Author
-
Mayer, Sandra, Roeser, Marc, Lachmann, Peter, Sumiyashi Ishii, Jae Mi Suh, Harlander, Sabine, Desch, Michael, Brunssen, Coy, Morawietz, Henning, Tsai, Sophia Y., Ming-Jer Tsai, Hohenstein, Bernd, Hugo, Christian, and Todorov, Vladimir T.
- Subjects
- *
TRANSCRIPTION factors , *OVALBUMINS , *RENIN regulation , *GENE expression , *JUXTAGLOMERULAR apparatus , *CELL culture - Abstract
This study aimed to investigate the possible involvement of the orphan nuclear receptor chicken ovalbumin upstream promoter transcription factor II (COUP-TFII) in the regulation of renin gene expression. COUP-TFII colocalized with renin in the juxtaglomerular cells of the kidney, which are the main source of renin in vivo. Protein-DNA binding studies demonstrated that COUP-TFII binds to an imperfect direct repeat COUP-TFII recognition sequence (termed hereafter proxDR) in the proximal renin promoter. Because cAMP signaling plays a central role in the control of the renin gene expression, we suggested that COUP-TFII may modulate this cAMP effect. Accordingly, knockdown of COUP-TFII in the clonal renin-producing cell lines As4.1 and Calu-6 diminished the stimulation of the reninmRNAexpression by cAMP agonists. In addition, the mutation of the proxDR element in renin promoter reporter gene constructs abrogated the inducibility by cAMP. The proxDR sequence was found to be necessary for the function of a proximal renin promoter cAMP-response element (CRE). Knockdown of COUP-TFII or cAMP-binding protein (CREB), which is the archetypal transcription factor binding to CRE, decreased the basal renin gene expression. However, the deficiency of COUP-TFII did not further diminish the renin expression when CREB was knocked down. In agreement with the cell culture studies, mutant mice deficient in COUP-TFII have lower renin expression than their control strain. Altogether our data show that COUP-TFII is involved in the control of renin gene expression. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
598. Direct transcriptional regulation of neuropilin-2 by COUP-TFII modulates multiple steps in murine lymphatic vessel development.
- Author
-
Fu-Jung Lin, Xinpu Chen, Jun Qin, Young-Kwon Hong, Ming-Jer Tsai, Tsai, Sophia Y., Lin, Fu-Jung, Chen, Xinpu, Qin, Jun, Hong, Young-Kwon, and Tsai, Ming-Jer
- Subjects
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TRANSCRIPTION factors , *NEUROPILINS , *MOUSE leukemia , *LYMPHATIC cancer , *METASTASIS , *CELL proliferation , *MAMMARY glands , *PROTEIN metabolism , *RNA metabolism , *ANIMAL experimentation , *BINDING sites , *CELL physiology , *CELL receptors , *CELL motility , *COMPARATIVE studies , *GENES , *RESEARCH methodology , *MEDICAL cooperation , *MICE , *RESEARCH , *RESEARCH funding , *EVALUATION research , *FETAL development , *ENDOTHELIAL growth factors , *GENOTYPES - Abstract
The lymphatic system plays a key role in tissue fluid homeostasis. Lymphatic dysfunction contributes to the pathogenesis of many human diseases, including lymphedema and tumor metastasis. However, the mechanisms regulating lymphangiogenesis remain largely unknown. Here, we show that COUP-TFII (also known as Nr2f2), an orphan member of the nuclear receptor superfamily, mediates both developmental and pathological lymphangiogenesis in mice. Conditional ablation of COUP-TFII at an early embryonic stage resulted in failed formation of pre-lymphatic ECs (pre-LECs) and lymphatic vessels. COUP-TFII deficiency at a late developmental stage resulted in loss of LEC identity, gain of blood EC fate, and impaired lymphatic vessel sprouting. siRNA-mediated downregulation of COUP-TFII in cultured primary human LECs demonstrated that the maintenance of lymphatic identity and VEGF-C-induced lymphangiogenic activity, including cell proliferation and migration, are COUP-TFII-dependent and cell-autonomous processes. COUP-TFII enhanced the pro-lymphangiogenic actions of VEGF-C, at least in part by directly stimulating expression of neuropilin-2, a coreceptor for VEGF-C. In addition, COUP-TFII inactivation in a mammary gland mouse tumor model resulted in inhibition of tumor lymphangiogenesis, suggesting that COUP-TFII also regulates neo-lymphangiogenesis in the adult. Thus, COUP-TFII is a critical factor that controls lymphangiogenesis in embryonic development and tumorigenesis in adults. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
599. Targeted Disruption of NeuroD, a Proneural Basic Helix-Loop-Helix Factor, Impairs Distal Lung Formation and Neuroendocrine Morphology in the Neonatal Lung.
- Author
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Neptune, Enid R., Podowski, Megan, Calvi, Carla, Jang-Hyeon Cho, Garcia, Joe G. N., Tuder, Rubin, Linnoila, R. Ilona, Ming-Jer Tsai, and Dietz, Harry C.
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LUNGS , *NEUROENDOCRINE cells , *MARFAN syndrome , *TRANSCRIPTION factors , *LABORATORY mice , *EPITHELIAL cells - Abstract
Despite the importance of airspace integrity in vertebrate gas exchange, the molecular pathways that instruct distal lung formation are poorly understood. Recently, we found that fibrillin-1 deficiency in mice impairs alveolar formation and recapitulates the pulmonary features of human Marfan syndrome. To further elucidate effectors involved in distal lung formation, we performed expression profiling analysis comparing the fibrillin-1-deficient and wild-type developing lung. NeuroD, a basic helix-loop-helix transcription factor, fulfilled the expression criteria for a candidate mediator of distal lung development. We investigated its role in murine lung development using genetically targeted NeuroD-deficient mice. We found that NeuroD deficiency results in both impaired alveolar septation and altered morphology of the pulmonary neuroendocrine cells. NeuroD-deficient mice had enlarged alveoli associated with reduced epithelial proliferation in the airway and airspace compartments during development. Additionally, the neuroendocrine compartment in these mice manifested an increased number of neuroepithelial bodies but a reduced number of solitary pulmonary neuroendocrine cells in the neonatal lung. Over- expression of NeuroD in a murine lung epithelial cell line conferred a neuroendocrine phenotype characterized by the induction of neuroendocrine markers as well as increased proliferation. These results support an unanticipated role for NeuroD in the regulation of pulmonary neuroendocrine and alveolar morphogenesis and suggest an intimate connection between the neuroendocrine compartment and distal lung development. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
600. Mediation of Sonic hedgehog-induced expression of COUP-TFII by a protein phosphatase.
- Author
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Krishnan, Venkatesh, Pereira, Fred A., Yuhong Qiu, Chien-Huan Chen, Beachy, Philip A., Tsai, Sophia Y., and Ming-Jer Tsai
- Subjects
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TRANSCRIPTION factors , *CELLULAR signal transduction , *BIOCHEMICAL mechanism of action - Abstract
Presents research which identified a Sonic hedgehog (Shh) response element in the chicken ovalbumin upstream promoter-transcription factor II (COUP-TFII) promoter that binds to a factor distinct from Gli, a gene known to mediate Shh signaling. Stimulation of binding activity; Blocking induction by Shh-N, the amino-terminal signaling domain; Impact of Shh-N signaling; Identification of part of Shh-N signaling pathway.
- Published
- 1997
- Full Text
- View/download PDF
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