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In boreal forests, European aspen (Populus tremula L.) is a keystone species that hosts a variety of accompanying species including epiphytic lichens. Forest management actions have led to a decrease in aspen abundance and subsequent loss of suitable habitats of epiphytic lichens. In this study, we evaluate the environmental responses of epiphytic lichen species richness and community composition on aspen, focusing on the potential of remote sensing by combined hyperspectral imaging and airborne laser scanning to identify suitable habitats for epiphytic lichens. We measured different substrate and habitat parameters in the field (e.g., aspen diameter and bark pH) and by remote sensing (e.g., mean canopy height and tree species composition of the surrounding forest) in the study area in Southern Finland that includes protected and non-protected forest. We used linear regression and the Hierarchical Model of Species Communities (HMSC) to compare how the different parameters explain and predict lichen species richness and community composition, respectively. We show that coarse predictions of epiphytic lichen community composition can be made using parameters extracted from remote sensing data. Estimated mean canopy height, tree density, dominant tree species and tree species diversity of the stand predicted the species community on aspens slightly better than field parameters. Remote sensing variables calculated over a larger area (30 m radius) always outperformed the same variables calculated over a smaller area (10 m radius) in predicting community composition, highlighting the cost-efficiency of remote sensing compared to covering a similar area with on-ground measurements. These results are encouraging for the prospects of using remote sensing data to direct field inventories and to map potential high-biodiversity habitats. Aspen bark pH was the only parameter affecting species richness regardless of whether the forest was protected or not, whereas, interestingly, the effects of tree diameter, height and furrow depth were only significant in protected areas. Our results also underline the importance of protected areas, since they hosted a higher tree-specific number of epiphytic lichen species, and red listed species, than non-protected areas.

Survivors of childhood bacterial meningitis (BM) often develop hearing impairment (HI). In low- and middle-income countries (LMICs), BM continues to be a significant cause of hearing disability. We assessed hearing among BM survivors using auditory steady-state responses (ASSR), providing frequency-specific estimated audiograms, and examined whether ASSR would provide a greater understanding of BM-induced HI. Survivors from two prospective BM trials (ISRCTN62824827; NCT01540838) from Luanda Children’s Hospital were examined in a follow-up visit with a median duration of 26 months after BM. The hearing of 50 BM survivors and 19 control children was evaluated using ASSR and auditory brainstem response (ABR) after interview and neurological and otorhinolaryngological examinations. The median age of survivors was 80 (IQR 86) months. We diagnosed HI (better ear hearing ≥ 26 dB) in 9/50 (18%) children. Five of the fifty survivors (10%) and 14/100 ears (14%) had profound HI (>80 dB). Severe-to-profound HI affected all frequencies steadily, affecting only the ears of BM survivors (18/100 vs. 0/38, p = 0.003). When looking only at the severely or profoundly affected ears, young age, low Glascow coma score, pneumococcal aetiology, and ataxia were associated with a worse hearing outcome.

Ras proteins play a causal role in human cancer by activating multiple pathways that promote cancer growth and invasion. However, little is known about how Ras induces the first diagnostic features of invasion in solid tumors, including loss of epithelial integrity and breaching of the basement membrane (BM). In this study, we found that oncogenic Ras strongly promotes the activation of hepsin, a member of the hepsin/TMPRSS type II transmembrane serine protease family. Mechanistically, the Ras-dependent hepsin activation was mediated via Raf–MEK–ERK signaling, which controlled hepsin protein stability through the heat shock transcription factor-1 stress pathway. In Ras-transformed three-dimensional mammary epithelial culture, ablation of hepsin restored desmosomal cell–cell junctions, hemidesmosomes, and BM integrity and epithelial cohesion. In tumor xenografts harboring mutant KRas, silencing of hepsin increased local invasion concomitantly with accumulation of collagen IV. These findings suggest that hepsin is a critical protease for Ras-dependent tumorigenesis, executing cell–cell and cell–matrix pathologies important for early tumor dissemination.Significance:These findings identify the cell-surface serine protease hepsin as a potential therapeutic target for its role in oncogenic Ras-mediated deregulation of epithelial cell–cell and cell–matrix interactions and cohesion of epithelial structure.

Including Supplementary Materials and Methods, Supplementary Figures and Figure Legends 1-5, Supplementary Tables 1-7, and Supplementary References

Arvioitava teos: Kai Häggman: Päänäyttämöllä. Suomen Kansallisteatterin 150 vuotta. Tammi 2022. 486 s.

Urban air consists of a complex mixture of gaseous and particulate species from anthropogenic and biogenic sources that are further processed in the atmosphere. This study investigated the characteristics and sources of volatile organic compounds (VOCs) and submicron organic aerosol (OA) in a traffic environment in Helsinki, Finland, in late summer. The anthropogenic VOCs (aVOCs; aromatic hydrocarbons) and biogenic VOCs (bVOCs; terpenoids) relevant for secondary-organic-aerosol formation were analyzed with an online gas chromatograph mass spectrometer, whereas the composition and size distribution of submicron particles was measured with a soot particle aerosol mass spectrometer. This study showed that aVOC concentrations were significantly higher than bVOC concentrations in the traffic environment. The largest aVOC concentrations were measured for toluene (campaign average of 1630 ng m−3) and p/m xylene (campaign average of 1070 ng m−3), while the dominating bVOC was α-pinene (campaign average of 200 ng m−3). For particle-phase organics, the campaign-average OA concentration was 2.4 µg m−3. The source apportionment analysis extracted six factors for OA. Three OA factors were related to primary OA sources – traffic (24 % of OA, two OA types) and a coffee roastery (7 % of OA) – whereas the largest fraction of OA (69 %) consisted of oxygenated OA (OOA). OOA was divided into less oxidized semi-volatile OA (SV-OOA; 40 % of OA) and two types of low-volatility OA (LV-OOA; 30 %). The focus of this research was also on the oxidation potential of the measured VOCs and the association between VOCs and OA in ambient air. Production rates of the oxidized compounds (OxPR) from the VOC reactions revealed that the main local sources of the oxidation products were O3 oxidation of bVOCs (66 % of total OxPR) and OH radical oxidation of aVOCs and bVOCs (25 % of total OxPR). Overall, aVOCs produced a much smaller portion of the oxidation products (18 %) than bVOCs (82 %). In terms of OA factors, SV-OOA was likely to originate from biogenic sources since it correlated with an oxidation product of monoterpene, nopinone. LV-OOA consisted of highly oxygenated long-range or regionally transported OA that had no correlation with local oxidant concentrations as it had already spent several days in the atmosphere before reaching the measurement site. In general, the main sources were different for VOCs and OA in the traffic environment. Vehicle emissions impacted both VOC and OA concentrations. Due to the specific VOCs attributed to biogenic emissions, the influence of biogenic emissions was more clearly detected in the VOC concentrations than in OA. In contrast, the emissions from the local coffee roastery had a distinctive mass spectrum for OA, but they could not be seen in the VOC measurements due to the measurement limitations for the large VOC compounds. Long-range transport increased the OA concentration and oxidation state considerably, while its effect was observed less clearly in the VOC measurements due to the oxidation of most VOC in the atmosphere during the transport. Overall, this study revealed that in order to properly characterize the impact of different emission sources on air quality, health, and climate, it is of importance to describe both gaseous and particulate emissions and understand how they interact as well as their phase transfers in the atmosphere during the aging process.

Bone destruction is a hallmark of chronic inflammation, and bone-resorbing osteoclasts arising under such a condition differ from steady-state ones. However, osteoclast diversity remains poorly explored. Here, we combined transcriptomic profiling, differentiation assays and in vivo analysis in mouse to decipher specific traits for inflammatory and steady-state osteoclasts. We identified and validated the pattern-recognition receptors (PRR) Tlr2, Dectin-1, and Mincle, all involved in yeast recognition as major regulators of inflammatory osteoclasts. We showed that administration of the yeast probiotic Saccharomyces boulardii CNCM I-745 (Sb) in vivo reduced bone loss in ovariectomized but not sham mice by reducing inflammatory osteoclastogenesis. This beneficial impact of Sb is mediated by the regulation of the inflammatory environment required for the generation of inflammatory osteoclasts. We also showed that Sb derivatives as well as agonists of Tlr2, Dectin-1, and Mincle specifically inhibited directly the differentiation of inflammatory but not steady-state osteoclasts in vitro. These findings demonstrate a preferential use of the PRR-associated costimulatory differentiation pathway by inflammatory osteoclasts, thus enabling their specific inhibition, which opens new therapeutic perspectives for inflammatory bone loss.

Modern High Level Synthesis (HLS) tools succeed well in their engineering productivity goal, but still require toolset and target technology specific modifications to the source code to guide the process towards an efficient implementation. Furthermore, their end result is a fixed function accelerator with limited field and runtime flexibility. In this paper we describe the status of AEx, a novel work-in-progress HLS tool developed in the FitOptiVis ECSEL JU project. AEx is based on automated exploration of architectures using a flexible and lightweight parallel co-processor template. We compare its current performance in CHStone C-language benchmarks to the state of the art FPGA HLS tool Vitis, provide ASIC implementation numbers, and identify the main remaining toolset features that are expected to dramatically further improve the performance. The potential is explored with a hand-optimized case study that shows only 1.64x performance slowdown with the programmable co-processor in comparison to the fixed function Vitis HLS result.

Driven by the growth of variable renewable electricity generation, the increasing electrification of heating and cooling of buildings holds a lot of demand-side management potential worldwide. However, building-stock-scale models depicting this flexibility for large-scale energy system optimisation models are lacking in literature. Thus, we've been developing an open-source tool called ArchetypeBuildingModel.jlspecifically for this purpose, aggregating building-stock-level statistical and technical data into desired simplified lumped-capacitance thermal models compatible with existing open-source energy system modelling frameworks. This paper aims to demonstrate the feasibility of such simplified thermal models via comparisons against dedicated building simulation software, as well as examine the sensitivities arising from the key modelling and parameter assumptions. In conclusion, parameter and modelling assumptions corroborated by existing literature achieved reasonable performance across all tested buildings and nodal configurations, although caution is advised when modelling buildings with structures heterogeneous in terms of thermal mass. Nevertheless, even at its worst, model performance was deemed plausible.

Yliopistojen järjestämien promootioiden historia ulottuu Euroopassa pitkälle keskiajalle saakka, sillä jo 1200-luvun Pariisissa ja Bolognassa väitelleitä kandidaatteja vihittiin maistereiksi. Eurooppalaisista yliopistoista oppiarvojen myöntöjuhla levisi Ruotsiin, jossa seremonia otettiin käyttöön ensin Uppsalan yliopistossa vuonna 1600 ja sitten Turun akatemiassa vuonna 1643. Promootiot olivat yliopiston tärkein yhteisöllinen juhla, jonka avulla paitsi kiinnitettiin oppineet osaksi akateemista yhteisöä, myös rakennettiin sisäistä hierarkiaa ja symboliikkaa.