445 results on '"Tomohiro, Watanabe"'
Search Results
402. Antigenic activation of Th1 cells in the gastric mucosa enhances dysregulated apoptosis and turnover of the epithelial cells
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Yasuhiko Shirai, Tadahiko Iizuka, Yoshio Wakatsuki, Tomohiro Watanabe, Masaru Yoshida, Toru Kita, and Masashi Yamori
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Biophysics ,Apoptosis ,Mice, Transgenic ,Lymphocyte Activation ,Biochemistry ,Interleukin 21 ,Mice ,Cytotoxic T cell ,Animals ,Regeneration ,IL-2 receptor ,Enterochromaffin-like cell ,Antigens ,Antigen-presenting cell ,Molecular Biology ,Cells, Cultured ,Mice, Inbred BALB C ,CD40 ,biology ,Cell Biology ,Th1 Cells ,Natural killer T cell ,Gastric Mucosa ,Gastritis ,Immunology ,Interleukin 12 ,Cancer research ,biology.protein - Abstract
Colonization of Helicobacter pylori in the stomach leads to chronic gastritis with massive infiltration by Th1 cells. To assess a role played by those T cells in the remodeling of gastric epithelium, we activated gastric T cells utilizing mice with CD4 T cells bearing transgenic TCR with or without deficiency in either IL-4 or IFN-γ or IL-12. Mice developed gastritis upon injection of an antigen into gastric mucosa. While neutrophil infiltration occurred even with a control antigen, infiltration by transgenic T cells was dependent on the specific antigen. The numbers of epithelial cells undergoing apoptosis and regeneration were increased in the mice with infiltrating T cells producing IFN-γ and the alignment of those cells in the glands was markedly dysregulated. In contrast, mice deficient in Th1 response showed no increase in cell division and apoptosis of epithelial cells. Thus, Th1 type T cells infiltrating into gastric mucosa play an independent role in controlling turnover of epithelial cells.
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- 2004
403. An empirical study on multiple LVCSR model combination by machine learning
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Seiichi Nakagawa, Takehito Utsuro, Tomohiro Watanabe, Hiromitsu Nishizaki, and Yasuhiro Kodama
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Cover (telecommunications) ,Computer science ,business.industry ,media_common.quotation_subject ,Speech recognition ,Machine learning ,computer.software_genre ,Task (project management) ,Empirical research ,Voting ,Word recognition ,Artificial intelligence ,business ,computer ,Word (computer architecture) ,media_common - Abstract
This paper proposes to apply machine learning techniques to the task of combining outputs of multiple LVCSR models. The proposed technique has advantages over that by voting schemes such as ROVER, especially when the majority of participating models are not reliable. In this machine learning framework, as features of machine learning, information such as the model IDs which output the hypothesized word are useful for improving the word recognition rate. Experimental results show that the combination results achieve a relative word error reduction of up to 39% against the best performing single model and that of up to 23% against ROVER. We further empirically show that it performs better when LVCSR models to be combined are chosen so as to cover as many correctly recognized words as possible, rather than choosing models in descending order of their word correct rates.
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- 2004
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404. A liver tolerates a portal antigen by generating CD11c+ cells, which select Fas ligand+ Th2 cells via apoptosis
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Toshiki Nishi, Toru Kita, Masashi Yamori, Tsutomu Chiba, Yasuhiko Shirai, Tomohiro Watanabe, Yoshio Wakatsuki, and Hiroaki Katsukura
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medicine.medical_specialty ,Fas Ligand Protein ,Liver cytology ,Ovalbumin ,Apoptosis ,Biology ,Interleukin 21 ,Mice ,Th2 Cells ,Internal medicine ,medicine ,Immune Tolerance ,Cytotoxic T cell ,Animals ,IL-2 receptor ,Antigen-presenting cell ,Cells, Cultured ,Interleukin 3 ,Antigen Presentation ,Mice, Inbred BALB C ,CD40 ,Membrane Glycoproteins ,Hepatology ,Interleukin-18 ,Cell Differentiation ,Molecular biology ,Adoptive Transfer ,Interleukin-12 ,CD11c Antigen ,Endocrinology ,Liver ,Interleukin 12 ,biology.protein ,Immunization - Abstract
Administration of an antigen (Ag) per oral route leads to apoptosis of Ag-specific CD4(+) T cells and to development of Th2 cells expressing Fas ligand (FasL) in the liver. We determined whether presentation of an ingested Ag in the liver alone was enough to select these FasL(+)Th2 cells and explored how this selection was achieved in the liver. Ovalbumin (OVA) administered orally was colocalized with class II(+) cells in the periportal and parenchymal area of the liver. On coculture with naive OVA-specific CD4(+) T cells, hepatic CD11c(+) cells from mice fed OVA generated Ag-specific Th2 cells. This was achieved by apoptosis of CD4(+) T cells, decrease of interleukin 12 (IL-12) secretion, and increase of IL-18 secretion by the CD11c(+) cells. Addition of IL-12 to this coculture prevented apoptosis of the CD4(+) T cells, which was associated with up-modulation of IL-2 receptor beta chain expression. Administration of IL-12 to mice fed OVA prevented apoptosis of OVA-specific CD4(+) T cells in the liver. Moreover, adoptive transfer of hepatic CD11c(+) cells from mice fed OVA together with OVA-specific CD4(+) T cells led to development of Th2 cells as well as apoptosis of the transferred CD4(+) T cells in the lymph nodes of the recipient mice on immunization with OVA. In conclusion, presentation of an ingested Ag by hepatic CD11c(+) cells selects Th2 cells resistant to apoptosis in the liver, which is mediated in part by down-regulation of IL-12 secretion by the former cells.
- Published
- 2003
405. Helper CD4+ T cells for IgE response to a dietary antigen develop in the liver
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Masashi Yamori, Yasuhiko Shirai, Yoshio Wakatsuki, Tsutomu Chiba, Toru Kita, Hiroaki Katsukura, and Tomohiro Watanabe
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Fas Ligand Protein ,Ovalbumin ,Immunology ,Administration, Oral ,Clonal Deletion ,Mice, Transgenic ,Biology ,Clonal deletion ,Interleukin 21 ,Mice ,Peyer's Patches ,Th2 Cells ,Antigen ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Hypersensitivity, Delayed ,IL-2 receptor ,Antigens ,Antigen-presenting cell ,Cells, Cultured ,Mice, Knockout ,Mice, Inbred BALB C ,CD40 ,Membrane Glycoproteins ,T-Lymphocytes, Helper-Inducer ,Immunoglobulin E ,Natural killer T cell ,Adoptive Transfer ,Genes, T-Cell Receptor ,Liver ,biology.protein ,Interleukin-4 ,Food Hypersensitivity ,Spleen - Abstract
Background: Although T-cell responses to food antigens are normally inhibited either by deletion, active suppression, or both of antigen-specific T cells, T helper cells for IgE response to a food antigen still develop by unknown mechanisms in a genetically susceptible host. Objective: We determined the site at which those IgE helper T cells develop. Methods: We administered ovalbumin (OVA) orally to DO11.10 mice and studied CD4 + T cells in Peyer's patches, the spleen, and the liver. Helper activity for IgE response was assessed by adoptively transferring those CD4 + T cells to naive BALB/c mice, followed by systemic immunization with OVA. Results: OVA-specific CD4 + T cells were deleted by cell death in the liver and Peyer's patches of DO11.10 mice fed OVA. OVA-specific CD4 + T cells that survived apoptosis in the liver expressed Fas ligand and secreted IL-4, IL-10, and transforming growth factor β 1 . CD4 + T cells producing IFN-γ were deleted in the liver by repeated feeding of OVA. On transfer of CD4 + T cells to naive mice and systemic immunization with OVA, a marked increase in OVA-specific IgE response developed only in the mice that received hepatic CD4 + T cells from OVA-fed mice, the effect of which was not observed in the recipients of hepatic CD4 + T cells deficient in IL-4. In addition, significant suppression of delayed-type hypersensitivity and IgG 1 /IgG 2a responses to OVA was observed in the recipients of hepatic CD4 + T cells, and this suppression required Fas/Fas ligand interaction. Conclusion: Together, these results suggested that a food antigen might negatively select helper T cells for IgE response to the antigen by preferential deletion of T H 1 cells in the liver. (J Allergy Clin Immunol 2003;111:1375-85.)
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- 2003
406. Differential localization of colitogenic Th1 and Th2 cells monospecific to a microflora-associated antigen in mice
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Masashi Yamori, Tsutomu Chiba, Yasuhiko Shirai, Toru Kita, Masaru Yoshida, Tomohiro Watanabe, Yoichiro Iwakura, and Yoshio Wakatsuki
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CD4-Positive T-Lymphocytes ,Ovalbumin ,Mice, SCID ,Interleukin 21 ,Interferon-gamma ,Mice ,Th2 Cells ,Escherichia coli ,Cytotoxic T cell ,Animals ,IL-2 receptor ,Antigen-presenting cell ,Interleukin 3 ,Antigens, Bacterial ,CD40 ,Hepatology ,biology ,Wasting Syndrome ,Gastroenterology ,Th1 Cells ,Natural killer T cell ,Colitis ,Immunology ,biology.protein ,Interleukin 12 ,Interleukin-4 - Abstract
Background & Aims: Clonal expansion of T cells is associated with inflammatory bowel diseases, which indicates antigenic activation of the T cells. We investigated whether the introduction of CD4 T cells specific to a microflora would initiate colitis and assessed the cytokine requirements for colitogenic CD4 T cells. Methods: Severe combined immunodeficiency disease (SCID) mice were reconstituted with CD4 T cells, which were either deficient in interleukin (IL)-4/interferon (IFN)-γ production or differentiated in vitro to T-helper (Th) 1/Th 2 and bearing a transgenic T-cell receptor (TCR) specific to ovalbumin (OVA), and then inoculated with an Escherichia coli –producing OVA (ECOVA). Clinical and histologic manifestations of colitis were assessed. Results: Mice with ECOVA colonization and OVA-specific CD4 T cells developed colitis with histologic features of focal infiltration by mononuclear cells, destruction of crypts, and loss of goblet cells. Further, infiltration was initiated in pre-existing lymph follicles. Th1- and IL-4 deficient T cells were diffusely localized in the lamina propria and submucosa, whereas Th2- and IFN-γ–deficient T cells were localized preferentially in lymph follicles. Conclusions: A microbe-associated antigen, non–cross-reactive to colonic tissue, can drive antigen-specific CD4 T cells to cause colitis in SCID mice. Although the presence of IFN-γ and IL-4 in the effector CD4 T cells was not an absolute requirement for the development of colitis, they seemed to regulate it in part by modulating migration of the effector T cells. GASTROENTEROLOGY 2002;123:1949-1961
- Published
- 2002
407. 1×8 star coupler waveguide device with multifiber-connector-compatible connections
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T. Shigematsu, T. Ota, K. Iwashita, Kengo Watanabe, and Tomohiro Watanabe
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Materials science ,business.industry ,Optical cross-connect ,Connection (vector bundle) ,Process (computing) ,law.invention ,Cable gland ,Reliability (semiconductor) ,law ,Optoelectronics ,business ,Waveguide ,Star coupler ,Electronic circuit - Abstract
In conclusion, we have developed a 1/spl times/8 star coupler waveguide device with mechanically transferable (MT)-compatible connections, which is easy to fabricate because the assembling process automatically involves adjusting the position of waveguides. In addition to this convenience, the device has low connection losses and good reliability. The device structure is favorable to mass production and can be applied to various waveguide circuits with low cost.
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- 2002
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408. MPO-receptacle waveguide device realizing push-on/pull-off fiber attachment to single mode waveguides
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X. Jie, T. Yamazaki, Tomohiro Watanabe, K. Iwashita, and T. Ota
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Optics ,Materials science ,business.industry ,Receptacle ,Single mode waveguides ,Fiber ,business ,Waveguide (optics) ,Pull-off - Abstract
We have successfully developed multifibre push on (MPO)-receptacle waveguide device realizing ultimately easy push-on/pull-off fiber attachment to single mode waveguides without index matching. Connection loss is 0.31 dB on the average and direct core-to-core contact has been achieved.
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- 2002
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409. Development of FFS Handbook for Refinery and Petrochemical Industries
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Tsutomu Kikuchi, Takayasu Tahara, Koichi Ikeda, Tomohiro Watanabe, Yoshiro Ideguchi, and Ted L. Anderson
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Task group ,Engineering ,Petrochemical ,business.industry ,High pressure ,Service (economics) ,media_common.quotation_subject ,Operations management ,Quality level ,business ,Refinery ,Manufacturing engineering ,media_common - Abstract
Pressure equipment in refinery and petrochemical industries in Japan has been getting old, mostly more than 30 years in operation. Accordingly, there are many fitness for service evaluations required for pressure equipment. However, Japanese regulation still requires as the same quality level as the original fabrication for pressure equipment in service. In order to introduce the latest FFS methodologies to Japanese industries, a special task group was established at the High Pressure Institute of Japan and started study of API RP579 from its drafting stage as a member of TG579. And then, FFS handbook for refinery and petrochemical industries has been developed based on API RP579 with several modifications to meet Japanese pressure vessel regulations on April 2001. It is expected that FFS handbook will be introduced as an exemplified standard with Japanese regulations for practical maintenance.Copyright © 2002 by ASME
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- 2002
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410. CD4 T cells monospecific to ovalbumin produced by Escherichia coli can induce colitis upon transfer to BALB/c and SCID mice
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Toru Kita, Tomohiro Watanabe, Tsutomu Chiba, Yoichi Matsunaga, Masaru Yoshida, Toshiyuki Itoh, Takashi Usui, Yoshio Wakatsuki, Sonoko Habu, Yasuhiko Shirai, and Masashi Yamori
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CD4-Positive T-Lymphocytes ,Colon ,Ovalbumin ,Immunology ,Epitopes, T-Lymphocyte ,Mice, Transgenic ,Mice, SCID ,Biology ,Inflammatory bowel disease ,Epitope ,BALB/c ,Microbiology ,Cell Line ,Mice ,Antigen ,Administration, Rectal ,medicine ,Escherichia coli ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Colitis ,Intestinal Mucosa ,Mice, Knockout ,Antigens, Bacterial ,Mice, Inbred BALB C ,Wasting Syndrome ,T-cell receptor ,General Medicine ,medicine.disease ,biology.organism_classification ,Adoptive Transfer ,Interleukin-10 ,Disease Models, Animal ,Lac Operon ,Injections, Intravenous ,biology.protein ,Cytokines ,Plasmids - Abstract
Although some animal models suggest an involvement of CD4 T cells reactive to luminal microbial antigen(s) for the pathogenesis of inflammatory bowel diseases (IBD), direct linkage between microflora-driven clonal expansion of CD4 T cells and the development of colitis has not been well studied. Here, BALB/c and SCID mice were given CD4 T cells purified from Rag-2(-/-) mice crossed to transgenic mice expressing TCR specific to ovalbumin (OVA) then administered with antibiotic-resistant Escherichia coli producing OVA (ECOVA) or LacZ (ECLacZ) via the rectum. The ECOVA-inoculated BALB/c and SCID mice developed a subacute colitis with microscopic features of distortion of crypt architecture, loss of goblet cells, and focal infiltration by mononuclear cells in the lamina propria (LP) and submucosa. Expanding OVA-specific CD4 T cells were detected in colonic follicles of mice with ECOVA. Early in colitis, OVA-specific CD4 T cells producing IFN-gamma predominate in the LP of the colon, which was followed by an emergence of OVA-specific CD4 T cells producing IL-4 and IL-10 at a later time point. Co-transfer of an IL-10-secreting OVA-specific CD4 T cell line prevented colitis. Thus, an expansion of CD4 T cells monospecific to OVA, an antigen non-cross-reactive to colonic tissue, can mediate both induction and inhibition of the colitis which was associated with hyperplasia of lymph follicles.
- Published
- 2001
411. The antioxidant effect of DL-alpha-lipoic acid on copper-induced acute hepatitis in Long-Evans Cinnamon (LEC) rats
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Hatsue Mizuno, Akio Kazusaka, Shoichi Fujita, Hideki Yamamoto, Tomohiro Watanabe, Kazuo Endo, Tsunemichi Hosokawa, and Junichiro Fukushige
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medicine.medical_specialty ,Antioxidant ,Alpha-Lipoic Acid ,medicine.medical_treatment ,Iron ,Administration, Oral ,Mitochondria, Liver ,Hepatitis, Animal ,medicine.disease_cause ,Biochemistry ,Antioxidants ,Lipid peroxidation ,chemistry.chemical_compound ,Eating ,Cytosol ,Internal medicine ,Microsomes ,medicine ,Animals ,Rats, Wistar ,Hepatitis ,chemistry.chemical_classification ,Rats, Inbred LEC ,biology ,Thioctic Acid ,Glutathione peroxidase ,Copper toxicity ,Body Weight ,Proteins ,General Medicine ,medicine.disease ,Enzymes ,Rats ,Endocrinology ,chemistry ,Liver ,Catalase ,Acute Disease ,Heme Oxygenase (Decyclizing) ,biology.protein ,Female ,Lipid Peroxidation ,Oxidative stress ,Copper ,Heme Oxygenase-1 - Abstract
The Long-Evans Cinnamon (LEC) rats, due to a genetic defect, accumulate excess copper (Cu) in the liver in a manner similar to patients with Wilson's disease and spontaneously develop acute hepatitis with severe jaundice. In this study we examined the protective effect of DL-alpha-Lipoic acid (LA) against acute hepatitis in LEC rats. LA was administered to LEC rats by gavage in doses of 10, 30 and 100 mg/kg five times per week, starting at 8-weeks-old and continuing till 12-weeks-old. Although LA had little effect against the increases in serum transaminase activities, it suppressed the loss of body weight and prevented severe jaundice in a dose-dependent manner. Antioxidant system analyses in liver showed that LA treatment significantly suppressed the inactivations of catalase and glutathione peroxidase, and the induction of heme oxygenase-1, an enzyme which is inducible under oxidative stress. Furthermore, LA showed dose-dependent suppressive effect against increase in nonheme iron contents of both cytosolic and crude mitochondrial fractions in a dose-dependent manner. Although at the highest dose, LA slightly suppressed the accumulation of Cu in crude mitochondrial fraction, it had no effect on the accumulation of Cu in cytosolic fraction. While LA completely suppressed the increase in lipid peroxidation (LPO) in the microsomal fraction at the highest dose, the suppressive effect against LPO in crude mitochondrial fractions was slight. From these results, it is concluded that LA has antioxidant effects at the molecular level against the development of Cu-induced hepatitis in LEC rats. Moreover, mitochondrial oxidative damage might be involved in the development of acute hepatitis in LEC rats.
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- 2001
412. In vivo evidence for accelerated generation of hydroxyl radicals in liver of Long-Evans Cinnamon (LEC) rats with acute hepatitis
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Shoichi Fujita, Tsunemichi Hosokawa, Hatsue Mizuno, Hideki Yamamoto, Tomohiro Watanabe, Ravi Gooneratne, Akio Kazusaka, and Kazuo Endo
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medicine.medical_specialty ,Copper Sulfate ,Radical ,Hepatitis, Animal ,Biochemistry ,Pathogenesis ,Lipid peroxidation ,chemistry.chemical_compound ,In vivo ,Physiology (medical) ,Internal medicine ,medicine ,Hydroxybenzoates ,Animals ,Mannitol ,Rats, Wistar ,Hepatitis ,Rats, Inbred LEC ,Chemistry ,Hydroxyl Radical ,fungi ,Free Radical Scavengers ,Jaundice ,medicine.disease ,Rats ,Endocrinology ,Liver ,Acute Disease ,Female ,sense organs ,medicine.symptom ,Salicylic Acid ,Salicylic acid ,Copper ,medicine.drug - Abstract
The Long-Evans Cinnamon (LEC) rats accumulate excess copper (Cu) in the liver in a manner similar to patients with Wilson's disease (WD) and spontaneously develop acute hepatitis with severe jaundice. Although hydroxyl radicals (*OH) have been proposed to be a cause of hepatitis by the accumulation of Cu, it is not clear whether or not *OH can be produced in the liver of hepatitic LEC rats in vivo and also can be involved in the onset of hepatitis. In the present study, *OH production in plasma and liver of hepatitic LEC rats was quantified by trapping *OH with salicylic acid (SA) as 2, 3-dihydroxybenzoic acid (2, 3-DHBA). The ratios of 2, 3-DHBA/SA were significantly higher in plasma and liver of hepatitic LEC rats than those of Wistar rats and LEC rats showing no signs of hepatitis. Furthermore, the ratios of 2, 3-DHBA/SA in plasma and liver of hepatitic LEC rats were almost the same as those of Wistar rats treated orally with CuSO(4) (0.5 mmol/kg) 2 h before acetylsalicylic acid (ASA) injection. We also evaluated the protective effects of D-mannitol (a *OH scavenger) treatment against acute hepatitis in LEC rats. D-mannitol (500 mg/kg) was administered intraperitoneally to 10-week-old LEC rats for 3 weeks. D-mannitol treatment suppressed the increases in serum aspartate aminotransferase activity and total bilirubin concentration. In addition, D-mannitol treatment significantly reduced hepatic mitochondrial lipid peroxidation, which is thought to be important in the pathogenesis of Cu-induced hepatotoxicity. These observations suggest that accelerated generation of *OH catalyzed by free Cu in the liver may, at least in part, play a role in the pathogenesis of acute hepatitis in LEC rats.
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- 2001
413. Massive rectal bleeding due to ileal tuberculosis
- Author
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Hirofumi Shirane, Akio Orino, Akio Todo, Masatoshi Kudo, Tsutomu Chiba, Shusuke Tomita, Tomohiro Watanabe, and Makoto Kayaba
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medicine.medical_specialty ,Tuberculosis ,medicine.medical_treatment ,Ileum ,Gastroenterology ,Mycobacterium tuberculosis ,Feces ,Internal medicine ,Laparotomy ,medicine ,Humans ,Ileal Diseases ,Radionuclide Imaging ,biology ,business.industry ,digestive, oral, and skin physiology ,Technetium ,Hepatology ,Middle Aged ,medicine.disease ,biology.organism_classification ,Sweet Syndrome ,Colorectal surgery ,medicine.anatomical_structure ,Tuberculosis, Gastrointestinal ,Giant cell ,Myelodysplastic Syndromes ,Female ,Radiology ,business ,Gastrointestinal Hemorrhage - Abstract
A patient with massive rectal bleeding due to ileal tuberculosis is reported. Technetium-99m labelled red blood cell scintigraphy indicated hemorrhage from the ileum, and laparotomy was then carried out. A 70-cm segment of ileum containing ulcers and erosions was resected, and epitheloid granuloma with Langhans-type giant cell was found in the resected specimen. Massive rectal bleeding is considered a rare presenting symptom of intestinal tuberculosis. Intestinal tuberculosis, including small intestinal tuberculosis, although uncommon, should be taken into consideration as a cause of rectal bleeding.
- Published
- 1999
414. The Ever-Expanding Immunological Universe
- Author
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Atsushi Kitani, Tomohiro Watanabe, and Warren Strober
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business.industry ,media_common.quotation_subject ,Immunology ,Gastroenterology ,medicine ,Immunology and Allergy ,Inflammation ,medicine.symptom ,business ,Mucosal immunity ,Universe ,media_common - Published
- 2006
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415. The complete genome sequences of sulfuroxidizing Gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T.
- Author
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Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima, and Manabu Fukui
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PROTEOBACTERIA , *BACTERIAL genomes , *RIBOSOMAL RNA , *CARBON fixation , *AMINO acid sequence , *GAMMAPROTEOBACTERIA - Abstract
Sulfurifustis variabilis and Sulfuricaulis limicola are autotrophic sulfur-oxidizing bacteria belonging to the family Acidiferrobacteraceae in the order Acidiferrobacterales. The type strains of these species, strain skN76T and strain HA5T, were isolated from lakes in Japan. Here we describe the complete genome sequences of Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. The genome of Sulfurifustis variabilis skN76T consists of one circular chromosome with size of 4.0 Mbp including 3864 protein-coding sequences. The genome of Sulfuricaulis limicola HA5T is 2.9 Mbp chromosome with 2763 protein-coding sequences. In both genomes, 46 transfer RNA-coding genes and one ribosomal RNA operon were identified. In the genomes, redundancies of the genes involved in sulfur oxidation and inorganic carbon fixation pathways were observed. This is the first report to show the complete genome sequences of bacteria belonging to the order Acidiferrobacterales in the class Gammaproteobacteria. [ABSTRACT FROM AUTHOR]
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- 2016
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416. The complete genome sequences of sulfuroxidizing Gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T.
- Author
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Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima, and Manabu Fukui
- Subjects
PROTEOBACTERIA ,BACTERIAL genomes ,RIBOSOMAL RNA ,CARBON fixation ,AMINO acid sequence ,GAMMAPROTEOBACTERIA - Abstract
Sulfurifustis variabilis and Sulfuricaulis limicola are autotrophic sulfur-oxidizing bacteria belonging to the family Acidiferrobacteraceae in the order Acidiferrobacterales. The type strains of these species, strain skN76
T and strain HA5T , were isolated from lakes in Japan. Here we describe the complete genome sequences of Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T . The genome of Sulfurifustis variabilis skN76T consists of one circular chromosome with size of 4.0 Mbp including 3864 protein-coding sequences. The genome of Sulfuricaulis limicola HA5T is 2.9 Mbp chromosome with 2763 protein-coding sequences. In both genomes, 46 transfer RNA-coding genes and one ribosomal RNA operon were identified. In the genomes, redundancies of the genes involved in sulfur oxidation and inorganic carbon fixation pathways were observed. This is the first report to show the complete genome sequences of bacteria belonging to the order Acidiferrobacterales in the class Gammaproteobacteria. [ABSTRACT FROM AUTHOR]- Published
- 2016
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417. Role of d-ser46 in the P-type calcium channel blocker, ω-agatoxin-TK
- Author
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Naoki Asakawa, Yukio Nishizawa, Tomohiro Watanabe, Manabu Kuwada, Kiichiro Nakajima, and Kumiko Y. Kumagaye
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chemistry.chemical_classification ,Circular dichroism ,P-type calcium channel ,Voltage-dependent calcium channel ,Chemistry ,Stereochemistry ,education ,Peptide ,female genital diseases and pregnancy complications ,Protein tertiary structure ,Agatoxin ,Amino acid ,body regions ,Serine ,reproductive and urinary physiology - Abstract
Publisher Summary A 48-amino-acid peptide, named “ω-agatoxin-TK” (ω-Aga-TK), has been isolated that has been found to be a potent blocker of the P-type calcium channels in rat cerebellar Purkinje neurons. The peptide has a unique structural profile, including a high density disulfide core structure with four disulfide bonds and a d -form amino acid, d -Ser. Interestingly, ω-Aga-TK contains two serine residues of which only Ser 46 is in the d -form (ω-[ d -Ser 46 ]Aga-TK). It has very low solubility under neutral conditions, which precluded detailed studies of its tertiary structure by nuclear magnetic resonance (NMR) spectroscopy. In the chapter, the structure–function relationship studies of ω-[ d -Ser 46 ]Aga-TK describes that ω-[ l -Ser 46 ]Aga-TK has 80- to 90-fold less potency toward the P-type calcium channels compared with ω-[ d -Ser 46 ] Aga-TK. Two proteolytic fragments of ω-[ d -Ser 46 ]Aga-TK—namely, ω-Aga-TK and a carboxyl-terminal peptide fragment, ω-Aga-TK, do not exert any significant inhibition of P-type calcium channels or interfere with the blockade of the channels elicited by native ω-Aga-TK. Furthermore, molecular dynamics calculations have shown that the carboxyl-terminal sixamino-acid peptide of ω-Aga-TK containing d -Ser 46 assumes a different conformation from that containing l -Ser 46 . These data suggests that the specific conformation of the carboxyl-terminal tail generated by the d -Ser 46 residue, together with the triple-stranded antiparallel β-sheet, might be essential for the blockade of the P-type calcium channels. In this study, the conformations of ω-[ d -Ser 46 ]Aga-TK and ω-[ l -Ser 46 ]Aga-TK are investigated by the combination of size-exclusion chromatography, circular dichroism (CD) measurement, and fluorescence spectroscopy to elucidate the structural and functional effects of the configuration of the Ser 46 residue in ω-Aga-TK. It has been found that ω-[ d -Ser 46 ]Aga-TK has a particularly compact molecular shape involving β-sheet structure, whereas ω-[ l -Ser 46 ]Aga-TK has a relatively unfolded or extended structure at physiological pH and ionic strength. These data are discussed in terms of the possible role of the configuration of the Ser 46 residue in determining the molecular conformation of ω-Aga-TK.
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- 1997
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418. Mechanical Strength under Aqueous Environment of Rice-Bran Carbon-Materials
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Syuujun Shikano, Hiroshi Iizuka, Yoshihiro Shibata, and Tomohiro Watanabe
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Aqueous solution ,Materials science ,chemistry ,Bran ,Chemical engineering ,Mechanical strength ,chemistry.chemical_element ,Carbon - Published
- 2004
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419. Isolation and characterization of a peptide isomerase from funnel web spider venom
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Atsushi Inoue, Yasushi Shikata, Yoshiyuki Kawakami, Yukio Nishizawa, Manabu Kuwada, Tomohiro Watanabe, Kouichi Katayama, and Tetsuyuki Teramoto
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Molecular Sequence Data ,Spider Venoms ,Peptide ,Isomerase ,Immunoglobulin light chain ,Agelenopsis aperta ,Biochemistry ,Serine ,Catalytic triad ,Animals ,Amino Acid Sequence ,Molecular Biology ,Amino Acid Isomerases ,chemistry.chemical_classification ,biology ,Sequence Homology, Amino Acid ,Serine Endopeptidases ,Protein primary structure ,Spiders ,Cell Biology ,Oligosaccharide ,biology.organism_classification ,chemistry ,Carbohydrate Sequence ,Peptides - Abstract
A novel peptide isomerase was purified from the venom of funnel web spider, Agelenopsis aperta. The complete primary structure of the isomerase has been established by sequence analyses of polypeptide chains, assignments of disulfide bridges, carbohydrate analyses, and mass spectrometry of sugar chains. The isomerase was found to be a 29-kDa polypeptide that consists of an 18-residue light chain and a 243-residue heavy chain connected by a single disulfide bridge. The heavy chain contains three intramolecular disulfide bridges and one N-linked oligosaccharide chain with a simple trimannosyl core structure. A sequence homology search showed a significant similarity of the enzyme with serine proteases, particularly around a putative catalytic triad of the isomerase. The isomerase specifically interconverts the configuration of Ser46 of a 48-amino-acid peptide, omega-agatoxin-TK, and the conversion rate from L-Ser to D-Ser was approximately two times faster than the reverse reaction.
- Published
- 1995
420. Water Resistance of Porous Carbon Material
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Syuujun Shikano, Hiroshi Iizuka, and Tomohiro Watanabe
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Materials science ,Porous carbon ,Water resistance ,Chemical engineering - Published
- 2003
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421. Structure and chromosomal locus of the mouse gene encoding a cerebellar Purkinje cell-specific helix-loop-helix factor Hes-3
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Ryoichiro Kageyama, Tomohiro Watanabe, Shigetada Nakanishi, K. Sakurada, Yasuyoshi Sakai, and T. Sakagami
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Male ,Genotype ,Molecular Sequence Data ,Restriction Mapping ,Biophysics ,Locus (genetics) ,Cerebellar Purkinje cell ,Mice, Inbred Strains ,Biology ,Biochemistry ,Mice ,Purkinje Cells ,Chromosome 16 ,Mice, Inbred NOD ,Gene knockin ,Sequence Homology, Nucleic Acid ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Amino Acid Sequence ,Enhancer ,Molecular Biology ,Gene ,reproductive and urinary physiology ,Crosses, Genetic ,Genetics ,Base Sequence ,Sequence Homology, Amino Acid ,Helix-Loop-Helix Motifs ,Chromosome Mapping ,Cell Biology ,DNA ,Null allele ,Introns ,DNA-Binding Proteins ,Chromosome 4 ,Liver ,Drosophila ,Female ,biological phenomena, cell phenomena, and immunity - Abstract
HES-3 is a cerebellar Purkinje cell-specific helix-loop-helix factor structurally related to the products of the Drosophila hairy and Enhancer of split genes. Here, we report the nucleotide sequence and chromosomal locus of the mouse Hes-3 gene. This gene consists of four exons and the exon-intron boundaries are well conserved when compared with those of the mouse Hes-1 and Drosophila hairy genes. Southern blot and interspecies backcross analyses show that the mouse Hes-3 gene is a single-copy gene and is located around position 80 on chromosome 4. Further analysis indicates that this locus is close to the Hes-5 locus, which is different from the Hes-1 locus (position 26 on chromosome 16). These results suggest that the Hes-3 and Hes-5 genes may be clustered on chromosome 4 while the Hes-1 gene is not.
- Published
- 1994
422. Fracture Strength of Linear Sliding Bearing made of Porous Carbon Material
- Author
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Syuujun Shikano, Tomohiro Watanabe, Masaki Senga, and Hiroshi Iizuka
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Porous carbon ,Materials science ,Bearing (mechanical) ,Flexural strength ,law ,Composite material ,law.invention - Published
- 2002
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423. A new phenotype of regulatory T cells is induced in the liver by high dose antigen feeding
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Tsutomu Chiba, Toru Kita, Masashi Yamori, Masaru Yoshida, Toshiyuki Itoh, Tomohiro Watanabe, Yasuhiko Shirai, Yoshio Wakatsuki, and Hideo Yagita
- Subjects
Antigen ,Hepatology ,Gastroenterology ,Cytotoxic T cell ,IL-2 receptor ,Biology ,Molecular biology ,Phenotype - Published
- 2001
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424. Electron Paramagnetic Resonance Study of Positive-Hole Pairs on Oxide Ions in Lithium Bismuthate Glass
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Tomohiro Watanabe, Tokuro Nanba, and Yoshinari Miura
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Electron nuclear double resonance ,Inorganic chemistry ,Bismuthate ,Oxide ,chemistry.chemical_element ,General Chemistry ,Condensed Matter::Disordered Systems and Neural Networks ,law.invention ,Ion ,chemistry.chemical_compound ,chemistry ,Triplet oxygen ,law ,Physical chemistry ,Lithium ,Physics::Chemical Physics ,Triplet state ,Electron paramagnetic resonance - Abstract
The electron paramagnetic resonance signals attributed to the triplet state of the positive-hole pairs on oxide ions are observed in (100−x) Bi2O3·x Li2O glass (x = 25, 30, 35 mol%). So far as we know, this is the first experimental observation of the triplet oxygen hole center in oxide glasses.
- Published
- 2001
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425. Fabrication and Characterization of Ferroelectric Poly(vinylidene fluoride–tetrafluoroethylene) Gate Field-Effect Transistor Memories
- Author
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Hiroyuki Miyashita, Tomohiro Watanabe, Takeshi Kanashima, and Masanori Okuyama
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Electron mobility ,Spin coating ,Organic field-effect transistor ,Materials science ,business.industry ,Transistor ,General Engineering ,General Physics and Astronomy ,Ferroelectricity ,law.invention ,Pentacene ,chemistry.chemical_compound ,chemistry ,law ,Optoelectronics ,Field-effect transistor ,Thin film ,business - Abstract
Organic ferroelectric gate field-effect transistor (FET) memories have been fabricated using pentacene as the semiconductor and a poly(vinylidene fluoride–tetrafluoroethylene) [P(VDF–TeFE)] thin film as the ferroelectric gate. The P(VDF–TeFE) film is prepared by spin coating and annealing at 170 °C for 2.5 h, and pentacene is prepared by vacuum evaporation. The polarization–electric field (P–E) hysteresis of the P(VDF–TeFE) thin film is observed and enhanced by poling treatment. The obtained P r of 4 µC/cm2 is sufficient for controlling pentacene surface potential. Good memory characteristics are obtained in the P(VDF–TeFE) gate FET. For such a FET, the ON/OFF ratio of drain current is 830, the carrier mobility is 0.11 cm2 V-1 s-1, and the memory retention is over 16 h.
- Published
- 2010
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426. Age and immunoglobulin G4-associated autoimmune hepatitis: author's response
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Masatoshi Kudo, Hobyung Chung, Tomohiro Watanabe, and Tsutomu Chiba
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Hepatology ,business.industry ,Immunoglobulin g4 ,Immunology ,Medicine ,Autoimmune hepatitis ,business ,medicine.disease ,Virology - Published
- 2010
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- View/download PDF
427. Reverse transformation condition after non-proportional loading in an Fe-based shape memory alloy
- Author
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Tomohiro Watanabe, Kikuaki Tanaka, and Fumitaka Matsuba
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Materials science ,Reverse transformation ,Fe based ,Shape-memory alloy ,Composite material ,Non proportional - Published
- 2000
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428. Subject Index Vol. 79, 2009
- Author
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Masaru Kuriyama, Bernard Flourié, Yuji Naito, Tatsuhiro Masaoka, Sabine Roman, Yoshihisa Tsuji, Yukinao Yamazaki, Katsura Mizushima, Driffa Moussata, Dirk P. van Asseldonk, Kumiko Saito, Kaori Suzuki, Yusuke Sekino, Toshihiro Nishizawa, Erik A.J. Rauws, Tsutomu Chiba, Nanne K. H. de Boer, Akiyo Yamakawa, Stephan R. Vavricka, Izumi Nakagawa, Hirofumi Hara, Tomohisa Takagi, Tomohiro Watanabe, Christoph Beglinger, Bernardina M. Kanis, Etsuko Kishimoto, Berthold Schneider, Michael Neubrand, Nobutaka Fujisawa, Lukas Degen, Kimiko Hori, Atsushi Nakajima, Gundula Straub, Bram D.J. van den Elzen, Hiroshi Ichikawa, Yasser A. Alderlieste, Emanuel Burri, Ikuhiro Hirata, Toshifumi Hibi, Shigeru Koyama, Tomoyuki Akiyama, Rupert Althaus, Toshikazu Yoshikawa, Masahiro Ohtani, Michiro Otaka, Hiroshi Nakase, Sakae Mikami, Takeshi Azuma, Satoko Adachi, Dieter Jüngst, Reginald del Pozo, Thomas P. Hüttl, Kensuke Kubota, Tatsushi Omatsu, Ayako Tomimoto, Hiroyuki Suto, Yuriko Minegishi, Fumiyasu Nakamura, Fritz Spelsberg, Kouhei Yamashita, Sylvette Claudel, Christoph Jüngst, Eisuke Iwasaki, Ad A. van Bodegraven, Keiko Akimoto, Hédia Benmansour, Ulrich Beuers, Stéphane Nancey, Satoshi Kokura, Masahiko Inamori, Osamu Handa, Michael Manz, Yoshiyuki Ito, Satoru Saito, Ikumi Yoshida, Tetsuya Okayama, Yoshihide Ueda, Hidekazu Suzuki, Atsushi Nakamura, Denis Gründel, Takuji Kato, Natsuko Hayashi, and Yoshiaki Ohara
- Subjects
Index (economics) ,Statistics ,Gastroenterology ,Subject (documents) ,Mathematics - Published
- 2009
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429. 96 Muramyl Dipeptide Activation of Nucleotide-Binding Oligomerization Domain 2 Protects Mice from Experimental Colitis
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Keiko Ozato, Naoki Asano, Tomohiro Watanabe, Peter J. Murray, Ivan J. Fuss, Atsushi Kitani, and Warren Strober
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chemistry.chemical_classification ,chemistry.chemical_compound ,Hepatology ,Biochemistry ,Chemistry ,Gastroenterology ,Experimental colitis ,Nucleotide ,Muramyl dipeptide ,Domain (software engineering) - Published
- 2008
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430. Cd4+Cd25+regulatory T cells inhibit antigen-specific colitis by altering the localization of colitogenic Cd4+T cells
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Tomohiro Watanabe, Tsutomu Chiba, Yoshio Wakatsuki, and Masaru Yoshida
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Adoptive cell transfer ,Hepatology ,biology ,Chemistry ,CD44 ,Cell ,Gastroenterology ,medicine.disease ,Molecular biology ,In vitro ,Ovalbumin ,medicine.anatomical_structure ,Antigen ,medicine ,biology.protein ,IL-2 receptor ,Colitis - Abstract
Background and Aims; Ahhough CD4+CD25+ T (Treg) cells suppress development of autoimmune disease in animals, little is known as to the mechanism by which Treg cells inhibit the responses of antigen (Ag)-speciflc pathogenic T cells in vivo Recently, we established an ani~nal model of colitis in an Ag-specific manner by inoculating E.coli expressing ovalbumin (Gastroenterology 2002;123:1949-61). In this paper, we investigate the mechanism how Treg cells control Ag-specific colitis by vasualizing the localization of cditogenic T cells Methods; Ovalbumin(OVA)-specific colitis was induced by adoptive transfer of CD4 + CD25T celIs (lxl06/mouse)purified from DO1110 (OVA-TCR-transgenic) mice into SCID mice t0llowed by oraI administration of E coli expressing OVA (ECOVA)or LacZ (ECLACZ) These SCID mice were treated with CD4 + CD25or CD4 + CD25 + T ceils (5x 105/mouse) puritied from BALB/e mice. Results; Adoptive transfer of OVA-specific CD4 + CD25T cells tbllowed by' oral administration of ECOVA, but not ECLACZ, developed coIitis in SCID mice. In these mice, massive monmmdear cell infihmtion and loss of goblet cells were obserced in the proximal colon, which was associated with diffuse localization ot OVA-specific (KJ 1-26 + ) T cells in the submucosa. In contrast, such intlamtnatory changes were hardly seen in the mice treated with Treg cells. Interestingly', KJb26+ T cells were pre~erentiaBy localized in colonic follicles in the mice treated with Treg cells. AlphaEbeta7(aEb7) expression was observed in colonic tollicles of the mice treated with Treg cells. ]:/ow-cytometric analysis revealed significant decrease of the percentage in CD4 + KJ1-26 + T ceils in colon lamnia pmpria lymphocy'tes. Moreover, aEb7 expression in CD4+KJ1-26+CD25T cells stimulated by" anti-CD3 in vitro was enhanced in the presence of Treg cells, whereas CD44 and CD69 expression was suppressed, Conclusion; Treg cells suppress development of Ag-specdic colitis by akering the localization of pathogenic Ag-specihc CD4 + "l cells which is achieved by aEb7 expression m the latter cells.
- Published
- 2003
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- View/download PDF
431. Deficient Thl response to a gastritogenic antigen suppresses cell turnover and augments apoptosis of gastric epithelium
- Author
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Masashi Yamori, Toru Kita, Yoshio Wakatsuki, Yasuhiko Shirai, Tomohiro Watanabe, and Tsutomu Chiba
- Subjects
Hepatology ,Antigen ,Apoptosis ,Chemistry ,Immunology ,Cell turnover ,Gastroenterology ,Cancer research ,Gastric epithelium - Published
- 2003
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- View/download PDF
432. Simple and Efficient ChiralDopants to Induce BluePhases and Their Optical Purity Effects on the Physical Propertiesof Blue Phases.
- Author
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Keiki Kishikawa, Takaaki Sugiyama, Tomohiro Watanabe, Shota Aoyagi, Michinari Kohri, Tatsuo Taniguchi, Masahiro Takahashi, and Shigeo Kohmoto
- Published
- 2014
- Full Text
- View/download PDF
433. Correlation of primary and secondary immune responses in the stomach to the gastric pathology
- Author
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Yoshio Wakatsuki, Masaru Yoshida, Tsutomu Chiba, Tomohiro Watanabe, Yasuhiko Shirai, Masashi Yamori, Toru Kita, and Atsushi Nakagawa
- Subjects
medicine.medical_specialty ,Pathology ,Immune system ,medicine.anatomical_structure ,Hepatology ,business.industry ,Gastric pathology ,Internal medicine ,Stomach ,Gastroenterology ,medicine ,business - Published
- 2001
- Full Text
- View/download PDF
434. A role played by salivary glands in the induction and maintenance of oral immunization to Helicobacter pylori in the stomach
- Author
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Tomohiro Watanabe, Yasuhiko Shirai, Tadahiko Iizuka, Toru Kita, Yoshio Wakatsuki, Takashi Kusumoto, Atsushi Nakagawa, and Masashi Yamori
- Subjects
Oral immunization ,medicine.anatomical_structure ,biology ,Hepatology ,business.industry ,Stomach ,Immunology ,Gastroenterology ,Medicine ,Helicobacter pylori ,business ,biology.organism_classification - Published
- 2001
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- View/download PDF
435. A novel colitis model induced by immune responses to an antigen expressed in luminal bacteria
- Author
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Masaru Yoshida, Masashi Yamori, Toru Kita, Yasuhiko Shirai, Atsushi Nakagawa, Tsutomu Chiba, Tomohiro Watanabe, and Yoshio Wakatsuki
- Subjects
Immune system ,Antigen ,Hepatology ,Immunology ,medicine ,Gastroenterology ,Biology ,Colitis ,biology.organism_classification ,medicine.disease ,Bacteria - Published
- 2001
- Full Text
- View/download PDF
436. CD4+CD25+ T Cells Regulate Colonic Localization of CD4 T Cells Reactive to a Microbial Antigen.
- Author
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Tomohiro Watanabe, Masashi Yamori, Toru Kita, Tsutomu Chiba, and Yoshio Wakatsuki
- Published
- 2005
- Full Text
- View/download PDF
437. Internal rotation of biphenyl in solution studied by IR and NMR spectra
- Author
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Tomohiro Watanabe, Minoru Akiyama, and Masato Kakihana
- Subjects
Biphenyl ,Chemistry ,Infrared ,Internal rotation ,General Engineering ,Spin–lattice relaxation ,Nuclear magnetic resonance spectroscopy ,NMR spectra database ,chemistry.chemical_compound ,Nuclear magnetic resonance ,Deuterium ,Chemical solution ,Physical chemistry ,Physical and Theoretical Chemistry - Published
- 1986
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- View/download PDF
438. Determination of hydroxy radicals based on hydroxylation of phenols by HPLC with fluorescence detection
- Author
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Myung Koo Lee, Hiroaki Nagaoka, Tomohiro Watanabe, Yosuke Ohkura, and Hitoshi Nohta
- Subjects
Hydroxylation ,chemistry.chemical_compound ,Chemistry ,Radical ,Organic chemistry ,Phenols ,High-performance liquid chromatography ,Fluorescence ,Analytical Chemistry - Abstract
ヒドロキシラジカル(・OH)による芳香環の水酸化反応を利用するHPLC蛍光定量法を開発した.芳香族化合物としてはフェノールであるp-クマル酸,チラミン,オクトパミン及びシネフリンを用いた.それぞれの水酸化反応により生成するカテコールであるカフェー酸,ドーパミン,ノルエピネフリン及びエピネフリンをイオン交換カートリッジを用いて固相抽出した後,カテコール化合物に特異的な蛍光試薬メゾ-1,2-ジフェニルエチレンジアミンを用いて蛍光ラベルし,HPLC検出する.・OHの発生系としては主にFe2+/ジヒドロキシフマル酸系を用いた.内標準物質としてカフェー酸の定量には3,4-ジヒドロキシフェニル酢酸を用い,他のアミンの場合にはイソプロテレノールを用いた.生成したカテコール類の検出下限(S/N=3)は10~25fmolであった.いずれのフェノールを用いても・OHの定量が可能であった.
- Published
- 1989
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439. ChemInform Abstract: Internal Rotation of Biphenyl in Solution Studied by IR and NMR Spectra
- Author
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Tomohiro Watanabe, Minoru Akiyama, and Masato Kakihana
- Subjects
NMR spectra database ,Biphenyl ,chemistry.chemical_compound ,Chemistry ,Internal rotation ,Physical chemistry ,General Medicine - Published
- 1986
- Full Text
- View/download PDF
440. The complete genome sequences of sulfur-oxidizing Gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T
- Author
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Hisaya Kojima, Aya Miura, Manabu Fukui, Tomohiro Watanabe, and Kazuhiro Umezawa
- Subjects
0301 basic medicine ,Genetics ,biology ,Bacteria ,Operon ,Circular bacterial chromosome ,Acidiferrobacterales ,030106 microbiology ,Chromosome ,Ribosomal RNA ,biology.organism_classification ,Genome ,Gram-negative ,Short Genome Report ,Acidiferrobacteraceae ,03 medical and health sciences ,030104 developmental biology ,Gammaproteobacteria ,Sulfur-oxidizing bacteria ,Gene - Abstract
Sulfurifustis variabilis and Sulfuricaulis limicola are autotrophic sulfur-oxidizing bacteria belonging to the family Acidiferrobacteraceae in the order Acidiferrobacterales. The type strains of these species, strain skN76(T) and strain HA5(T), were isolated from lakes in Japan. Here we describe the complete genome sequences of Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. The genome of Sulfurifustis variabilis skN76T consists of one circular chromosome with size of 4.0 Mbp including 3864 protein-coding sequences. The genome of Sulfuricaulis limicola HA5T is 2.9 Mbp chromosome with 2763 protein-coding sequences. In both genomes, 46 transfer RNA-coding genes and one ribosomal RNA operon were identified. In the genomes, redundancies of the genes involved in sulfur oxidation and inorganic carbon fixation pathways were observed. This is the first report to show the complete genome sequences of bacteria belonging to the order Acidiferrobacterales in the class Gammaproteobacteria.
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441. Cdx2 Expression and Intestinal Metaplasia Induced by H. pylori Infection of Gastric Cells Is Regulated by NOD1-Mediated Innate Immune Responses.
- Author
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Naoki Asano, Akira Imatani, Tomohiro Watanabe, Jun Fushiya, Yutaka Kondo, Xiaoyi Jin, Nobuyuki Ara, Kaname Uno, Katsunori Iijima, Tomoyuki Koike, Warren Strober, and Tooru Shimosegawa
- Subjects
- *
METAPLASIA , *HELICOBACTER pylori , *GASTRIC diseases , *NATURAL immunity , *GENE expression , *DISEASE risk factors - Abstract
Chronic infection with the bacterial Helicobacter pylori is a major cause of gastric and duodenal ulcer disease, gastric mucosal atrophy, and cancer. H. pylori--induced expression of the intestinal epithelial--specific transcription factor caudal-related homeobox 2 (Cdx2) contributes to intestinal metaplasia, a precursor event to gastric cancer. Given a role for the bacterial pattern recognition molecule nucleotide-binding oligomerization domain 1 (NOD1) in the innate immune response to bacterial infection, we investigated mechanisms used by NOD1 to regulate H. pylori infection and its propensity towards the development of intestinal metaplasia. We found that Cdx2 was induced by H. pylori infection in both normal and neoplastic gastric epithelial cells in a manner that was inversely related to NOD1 signaling. Mechanistic investigations revealed that Cdx2 induction relied upon activation of NF-κB but was suppressed by NOD1-mediated activation of TRAF3, a negative regulator of NF-κB. In vivo, prolonged infection of NOD1-deficient mice with H. pylori led to increased Cdx2 expression and intestinal metaplasia. Furthermore, gastric epithelial cells from these mice exhibited increased nuclear expression of the NF-κB p65 subunit and decreased expression of TRAF3. Overall, our findings illuminated a role for NOD1 signaling in attenuating H. pylori--induced Cdx2 expression in gastric epithelial cells, suggesting a rationale to augment NOD1 signaling in H. pylori--infected patients to limit their risks of accumulating precancerous gastric lesions. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
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442. Stress Response Protein Cirp Links Inflammation and Tumorigenesis in Colitis-Associated Cancer.
- Author
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Toshiharu Sakurai, Hiroshi Kashida, Tomohiro Watanabe, Satoru Hagiwara, Tsunekazu Mizushima, Hideki Iijima, Naoshi Nishida, Hiroaki Higashitsuji, Jun Fujita, and Masatoshi Kudo
- Subjects
- *
NEOPLASTIC cell transformation , *CARCINOGENESIS , *COLITIS , *CANCER research , *INFLAMMATORY bowel diseases , *INFLAMMATION - Abstract
Colitis-associated cancer (CAC) is caused by chronic intestinal inflammation and is reported to be associated with refractory inflammatory bowel disease (IBD). Defective apoptosis of inflammatory cell populations seems to be a relevant pathogenetic mechanism in refractory IBD. We assessed the involvement of stress response protein cold-inducible RNA-binding protein (Cirp) in the development of intestinal inflammation and CAC. In the colonic mucosa of patients with ulcerative colitis, expression of Cirp correlated significantly with the expression of TNFα, IL23/IL17, antiapoptotic proteins Bcl-2 and Bcl-xL, and stem cell markers such as Sox2, Bmi1, and Lgr5. The expression of Cirp and Sox2 was enhanced in the colonic mucosae of refractory ulcerative colitis, suggesting that Cirp expression might be related to increased cancer risk. In human CAC specimens, inflammatory cells expressed Cirp protein. Cirp-/- mice given dextran sodium sulfate exhibited decreased susceptibility to colonic inflammation through decreased expression of TNFα, IL23, Bcl-2, and Bcl-xL in colonic lamina propria cells compared with similarly treated wild-type (WT) mice. In the murine CAC model, Cirp deficiency decreased the expression of TNFα, IL23/IL17, Bcl-2, Bcl-xL, and Sox2 and the number of Dclk1+ cells, leading to attenuated tumorigenic potential. Transplantation of Cirp-/- bone marrow into WT mice reduced tumorigenesis, indicating the importance of Cirp in hematopoietic cells. Cirp promotes the development of intestinal inflammation and colorectal tumors through regulating apoptosis and production of TNFα and IL23 in inflammatory cells. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
443. Plasmacytoid Dendritic Cell Activation and IFN-α Production Are Prominent Features of Murine Autoimmune Pancreatitis and Human IgG4-Related Autoimmune Pancreatitis.
- Author
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Yasuyuki Arai, Kouhei Yamashita, Katsutoshi Kuriyama, Masahiro Shiokawa, Yuzo Kodama, Toshiharu Sakurai, Kiyomi Mizugishi, Kazushige Uchida, Norimitsu Kadowaki, Akifumi Takaori-Kondo, Masatoshi Kudo, Kazuichi Okazaki, Strober, Warren, Tsutomu Chiba, and Tomohiro Watanabe
- Subjects
- *
DENDRITIC cells , *PANCREATITIS , *IMMUNE response , *IMMUNOGLOBULIN G , *IMMUNOLOGY - Abstract
The abnormal immune response accompanying IgG4-related autoimmune pancreatitis (AIP) is presently unclear. In this study, we examined the role of plasmacytoid dendritic cell (pDC) activation and IFN-α production in this disease as well as in a murine model of AIP (MRL/Mp mice treated with polyinosinic-polycytidylic acid). We found that the development of AIP in treated MRL/Mp mice occurred in parallel with pancreatic accumulation of pDCs producing IFN-α, and with pDC depletion and IFN-α-blocking studies, we showed that such accumulation was necessary for AIP induction. In addition, we found that the pancreas of treated MRL/Mp mice contained neutrophil extracellular traps (NETs) shown previously to stimulate pDCs to produce IFN-α. Consistent with these findings, we found that patients with IgG4-related AIP also exhibited pancreatic tissue localization of IFN-α--expressing pDCs and had significantly higher serum IFN-α levels than healthy controls. In addition, the inflamed pancreas of these patients but not controls also contained NETs that were shown to be capable of pDC activation. More importantly, patient pDCs cultured in the presence of NETs produced greatly increased levels of IFN-α and induced control B cells to produce IgG4 (but not IgG1) as compared with control pDCs. These data suggest that pDC activation and production of IFN-α is a major cause of murine AIP; in addition, the increased pDC production of IFN-α and its relation to IgG4 production observed in IgG4-related AIP suggest that this mechanism also plays a role in the human disease. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
444. Endoscopic ultrasound-guided gallbladder drainage for acute cholecystitis: Long-term outcomes after removal of a self-expandable metal stent.
- Author
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Kamata K, Takenaka M, Kitano M, Omoto S, Miyata T, Minaga K, Yamao K, Imai H, Sakurai T, Watanabe T, Nishida N, and Kudo M
- Subjects
- Aged, Endoscopy, Female, Fluoroscopy, Humans, Male, Metals, Middle Aged, Needles, Patient Safety, Reproducibility of Results, Retrospective Studies, Stents, Surgery, Computer-Assisted, Treatment Outcome, Cholecystitis, Acute surgery, Drainage, Endosonography, Gallbladder diagnostic imaging, Gallbladder surgery
- Abstract
Aim: To assess the long-term outcomes of this procedure after removal of self-expandable metal stent (SEMS). The efficacy and safety of endoscopic ultrasound-guided gallbladder drainage (EUS-GBD) with SEMS were also assessed., Methods: Between January 2010 and April 2015, 12 patients with acute calculous cholecystitis, who were deemed unsuitable for cholecystectomy, underwent EUS-GBD with a SEMS. EUS-GBD was performed under the guidance of EUS and fluoroscopy, by puncturing the gallbladder with a needle, inserting a guidewire, dilating the puncture hole, and placing a SEMS. The SEMS was removed and/or replaced with a 7-Fr plastic pigtail stent after cholecystitis improved. The technical and clinical success rates, adverse event rate, and recurrence rate were all measured., Results: The rates of technical success, clinical success, and adverse events were 100%, 100%, and 0%, respectively. After cholecystitis improved, the SEMS was removed without replacement in eight patients, whereas it was replaced with a 7-Fr pigtail stent in four patients. Recurrence was seen in one patient (8.3%) who did not receive a replacement pigtail stent. The median follow-up period after EUS-GBD was 304 d (78-1492)., Conclusion: EUS-GBD with a SEMS is a possible alternative treatment for acute cholecystitis. Long-term outcomes after removal of the SEMS were excellent. Removal of the SEMS at 4-wk after SEMS placement and improvement of symptoms might avoid migration of the stent and recurrence of cholecystitis due to food impaction., Competing Interests: Conflict-of-interest statement: All authors declare no conflicts-of-interest related to this article.
- Published
- 2017
- Full Text
- View/download PDF
445. Removal of diminutive colorectal polyps: A prospective randomized clinical trial between cold snare polypectomy and hot forceps biopsy.
- Author
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Komeda Y, Kashida H, Sakurai T, Tribonias G, Okamoto K, Kono M, Yamada M, Adachi T, Mine H, Nagai T, Asakuma Y, Hagiwara S, Matsui S, Watanabe T, Kitano M, Chikugo T, Chiba Y, and Kudo M
- Subjects
- Aged, Biopsy instrumentation, Biopsy methods, Colonoscopy adverse effects, Colonoscopy instrumentation, Female, Follow-Up Studies, Hemostasis, Endoscopic instrumentation, Hemostasis, Endoscopic methods, Hot Temperature, Humans, Intestinal Perforation epidemiology, Intestinal Perforation etiology, Male, Microsurgery adverse effects, Microsurgery instrumentation, Middle Aged, Postoperative Hemorrhage epidemiology, Postoperative Hemorrhage etiology, Prospective Studies, Surgical Instruments, Treatment Outcome, Colonic Polyps surgery, Colonoscopy methods, Colorectal Neoplasms surgery, Microsurgery methods
- Abstract
Aim: To compare the efficacy and safety of cold snare polypectomy (CSP) and hot forceps biopsy (HFB) for diminutive colorectal polyps., Methods: This prospective, randomized single-center clinical trial included consecutive patients ≥ 20 years of age with diminutive colorectal polyps 3-5 mm from December 2014 to October 2015. The primary outcome measures were en-bloc resection (endoscopic evaluation) and complete resection rates (pathological evaluation). The secondary outcome measures were the immediate bleeding or immediate perforation rate after polypectomy, delayed bleeding or delayed perforation rate after polypectomy, use of clipping for bleeding or perforation, and polyp retrieval rate. Prophylactic clipping after polyp removal wasn't routinely performed., Results: Two hundred eight patients were randomized into the CSP (102), HFB (106) and 283 polyps were evaluated (CSP: 148, HFB: 135). The en-bloc resection rate was significantly higher with CSP than with HFB [99.3% (147/148) vs 80.0% (108/135), P < 0.0001]. The complete resection rate was significantly higher with CSP than with HFB [80.4% (119/148) vs 47.4% (64/135), P < 0.0001]. The immediate bleeding rate was similar between the groups [8.6% (13/148) vs 8.1% (11/135), P = 1.000], and endoscopic hemostasis with hemoclips was successful in all cases. No cases of perforation or delayed bleeding occurred. The rate of severe tissue injury to the pathological specimen was higher HFB than CSP [52.6% (71/135) vs 1.3% (2/148), P < 0.0001]. Polyp retrieval failure was encountered CSP (7), HFB (2)., Conclusion: CSP is more effective than HFB for resecting diminutive polyps. Further long-term follow-up study is required., Competing Interests: Conflict-of-interest statement: None to declare.
- Published
- 2017
- Full Text
- View/download PDF
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