351. Metagenomic Biomarker for Upper Gastrointestinal Tract Involvement in Patients with Crohn's Disease.
- Author
-
Min Seob Kwak, Jae Myung Cha, Hyun Phil Shin, Jung Won Jeon, and Jin Young Yoon
- Subjects
- *
CROHN'S disease , *GASTROINTESTINAL system , *INFLAMMATORY bowel diseases , *HUMAN microbiota , *FISHER discriminant analysis - Abstract
Background/Aims The human gut microbiota serves as an important component in the pathogenesis of Crohn's disease (CD) that promote host-microbe imbalances leading to perturbed intestinal and immune homeostasis. In this study, we aimed to assess the potential clinical usefulness of using the colonic tissue microbiome by which biomarkers for upper gastrointestinal (UGI) involvement of CD could be obtained. Methods We analyzed colonic tissue samples from 26 patients with CD, including 13 with and 13 without UGI involvement at diagnosis from the Inflammatory Bowel Disease Multi-Omics Database. Metagenomic analysis of the V3-V4 region of the 16S ribosomal RNA gene was performed using QIIME1, DiTaxa and linear discriminant analysis effect size (LEfSe) method. Results Non-metric multidimensional scaling using Bray-Curtis distances revealed a complex pattern of community structures. There were no statistically significant differences in the community richness estimator (Chao) and the diversity estimator (Shannon index) between the CD patients with and without UGI involvement. The overall abundance of the genus Bacteroides was significantly increased in the patients with UGI involvement compared with those without UGI involvement. Taxa predicted by DiTaxa had the species Ruminococcus torques as significantly associated with UGI involvement, which was confirmed based on the LEfSe analysis (p=0.025). Conclusions These finding suggest that the species Ruminococcus torques might serve as a novel potential biomarker for UGI involvement of CD and its correlations in abundance with a range of bacterial species. The mechanisms of interactions between hosts and Ruminococcus torques should be further investigated. [ABSTRACT FROM AUTHOR]
- Published
- 2019