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Correction to: Changes in Pervoural Quartzite Crystal Lattice on Heating from 25 to 600°C They should read B V. A. Kukartsev, A. K. Abkaryan b B , b B V. I. Temnykh b B , b B V. V. Kukartsev b B , b B V. S. Tynchenko b Siberian Federal University, Krasnoyarsk, Russia B A. V. Kukartsev b Reshetnev Siberian State University of Science and Technology, Krasnoyarsk, Russia The authors affiliations are incorrect. [Extracted from the article]

Investigates the discovery of an amplified nonautonomous long terminal repeat (LTR) element of rice genomic sequence. Reference to the LTR element called Dasheng; Use of the transposon display AFLP technique; Implications of clustering in heterochromatin.

Two different views on factors limiting the abundance of pacific salmons in the marine period of their life are compared. According to traditional point of view, food resources are limited in the marine and oceanic epipelagic biotopes, so a strong competition for food exists between different species of genus Oncorhynchus or between pink salmon O. gorbuscha and other species that makes theIr abundance lower and biological conditions worse. Negative anomaly of the sea surface temperature is considered traditionally as a factor controlling the salmons distribution in the ocean because of the food supply worsening. The other point of view is proposed by authors in the 1980s and is based on comprehensive ecosystem studies of the Far Eastern Seas and the North Pacific. Following to this view, the food resources do not limit the abundance of salmons, which play secondary roles in trophic networks within the subarctic epipelagic layer. Besides, these data do not confirm stenotherm habits of salmons, particularly in conditions of low temperature (salmons could be found in the northern Bering and Okhotsk Seas even in winter). In favor of the latter view, new data are presented for 2018, when the highest biomass of the Russian salmons was observed, primarily due to pink salmon abundance, and the absolutely record Russian catch of pacific salmons in 677,200 t was landed.

The design and implementation of new beamlines featuring side‐bounce (single‐reflection) diamond monochromators at Cornell High Energy Synchrotron Source (CHESS) are described. Undulator radiation is monochromated using an interchangeable set of diamond crystal plates reflecting radiation in the horizontal (synchrotron) plane, where each crystal plate is set to one of the low‐index Bragg reflections (111, 220, 311 and 400) in either Bragg or Laue reflection geometries. At the nominal Bragg angle of 18° these reflections deliver monochromated X‐rays with photon energies of 9.7, 15.9, 18.65 and 22.5 keV, respectively. An X‐ray mirror downstream of the diamond monochromator is used for rejection of higher radiation harmonics and for initial focusing of the monochromated beam. The characteristics of the X‐ray beam entering the experimental station were measured experimentally and compared with the results of simulations. A reasonable agreement is demonstrated. It is shown that the use of selected high‐dislocation‐density 'mosaic' diamond single‐crystal plates produced using the chemical vapor deposition method yields a few‐fold enhancement in the flux density of the monochromated beam in comparison with that delivered by perfect crystals under the same conditions. At present, the Functional Materials Beamline at CHESS, which is used for time‐resolved in situ characterization of soft materials during processing, has been outfitted with the described setup. [ABSTRACT FROM AUTHOR]

Background and Aims: Data on comparative efficacy of various available endoscopic ultrasound-guided liver biopsy (EUS-LB) needles are limited. We sought to compare the performance of a novel Franseen-tip 22G fine-needle biopsy (FNB) device to that of 19G needle platforms for liver parenchyma. Methods: Consecutive patients referred for EUS and suspected to have hepatic parenchymal disease underwent EUS-LB using different EUS needles and were included in this retrospective study. Two blinded expert liver pathologists independently reviewed and reported on: total number of tissue fragments, length of longest fragment, number of complete and incomplete portal tracts (CPT and IPT), and specimen adequacy. Results: A 22G Franseen-tip needle (A) was used in 30 patients; 19G Tru-Cut needle (B) in 50 patients; 19G reverse beveled non-Tru-Cut needle (C) in 27 patients; and a 19G flexible non-Tru-Cut needle (D) in 28 patients. In the order of needles, A, B, C and D, > 10 tissue fragments were obtained in 100%, 6%, 82%, and 96% samples, the mean number of CPTs was 6.9; 3.0; 7.3; and 16.9, length of longest fragment was 3.8, 4. 7, 3.9, and 8.4 mm, and specimen adequacy was 66.7%, 46%, 82.1%, and 81.5%, respectively. A positive correlation was obtained between number of CPTs and length of longest fragment in samples accrued by 19G needles. Conclusion: EUS-LB specimens using 22G Franseen-tip needle appear highly fragmented, leading to inferior specimen adequacy compared to 19G non-Tru-Cut needles. We also report on using length of longest fragment as an additional criterion for specimen adequacy as it positively correlates with number of CPTs standard. [ABSTRACT FROM AUTHOR]

Demersal fish biomass is quantitatively evaluated in the bottom biotopes at the depths to 2000 m at the continental slope of the Okhotsk Sea on the data of 2,545 trawl catches obtained in 1977–2010. The total long-term average biomass is estimated as 3695.9 . 103 t, including 31.6 % of walleye pollock, 19.5 % of giant grenadier, and 13.8 % of greenland halibut (2400.9 . 103 t without pollock). The average density of fish concentration is 3.2 t/km2 without pollock; it is rather uniform by depth: from 2.6 t/km2 for 200–300 m to 3.7 t/km2 for 700–1000 m.

Composition of the demersal fish community in the bottom biotopes of 14 biostatistical areas of the Okhotsk Sea is considered on the data of 9,189 standard trawl catches obtained in 95 expeditions conducted by Pacific Fish. Res. Center (TINRO) in 1977–2010. The most abundant fish species in each area are ranked by biomass. The total demersal fish biomass is estimated as 9583.0 . 103 t (2124.9 . 103 t without pollock and herring). The most numerous demersal species are: pacific cod Gadus macrocephalus, yellowfin sole Limanda aspera, pacific sand lance Ammodytes hexapterus, great sculpin Mycocephalus polyacanthocephalus, and saffron cod Eleginus gracilis.

Some conceptions on marine ecology of pacific salmons (Oncorhynchus spp.), established in the second half of the last century, are discussed from critical position, as overemphasizing of the sea surface temperature influence on distribution of salmons and formation of their year-classes strength, deficiency of food (particularly in winter time) and fierce competition for food, pink salmon «suppression» over other salmon species and own adjacent generations, limited carrying capacity of the Subarctic zone for salmons, distortion of the epipelagic communities structure in the North Pacific by mass artificial reproduction of chum salmon, etc. Most of these ideas have not been confirmed by the data of long-term monitoring in complex marine expeditions conducted by Pacific Fish. Res. Center (TINRO) in the Far-Eastern Seas and adjacent North Pacific waters since the 1980s till nowadays. The data show that pacific salmons are very ecologically plastic species with wide temperature range of habitat. Salmons are able to considerable vertical migrations crossing easily the temperature gradient zones and different water masses. They have wide feeding spectra. Migrating dispersed, they successfully get their ration, even in vast areas with relatively low concentration of prey (macroplankton and small nekton). Total biomass of all species of pacific salmons in the North Pacific does not exceed 4-5 million tons (1.5-2.0 million tons in the Russian waters), whereas the stocks of other mass species of nekton are hundreds of millions of tons. The salmons consume 1.0-5.0 % of the total consumption by nekton in the epipelagic layer in the western Bering Sea, 0.5-1.0 % in the Okhotsk Sea, 5.0-15.0 % at East Kamchatka, and less than 1 % in the Pacific waters at Kuril Islands, So, the role of pacific salmons in trophic nets of the Subarctic waters is rather moderate. Therefore, neither pink salmon, nor chum salmon can be seriously considered as the species responsible for reorganization of large ecosystems and fluctuating of other mass nekton species.

Influence of several factors (water temperature, food supply, predatory, size of juveniles) on pacific salmons survival during wintering is considered on the data collected from the upper pelagic layer in surveys conducted by Pacific Fisheries Research Center (TINRO) in the North-West Pacific. There is highly unlikely that the temperature influences on fish mortality directly. There is no obvious proof of negative influence of the low temperature on food base of salmons, as well. The lowering of forage zooplankton biomass in the Subarctic Front zone in February-March is insufficient for the salmons starvation taking into account that the total abundance of planktivorous nekton is also lowered in this area and generally in the Subarctic waters in winter-spring, so the food supply cannot be considered as a crucial factor of the salmons survival. Seasonal changes with lowering of feeding intensity, lipid accumulation, and somatic growth in winter known for pacific salmons aren’t forced by poor food base but are a feature of their species-specific life strategy with cyclic changes of metabolism. Predators are not abundant in the Subarctic zone in winter, so the predatory also cannot cause the high mortality of salmons. Relationship between the size of juveniles and their mortality in winter is considered in detail for the Okhotsk Sea stocks of pink salmon and there is concluded that the size of juveniles cannot be a predictor of their year-classes return for spawning. Thus, any single factor doesn’t determine winter mortality of pacific salmons but their survival is likely determined by a complex interaction of abiotic and biotic factors.

The results of statistical researches of morbidity of students of university are presented in times of socio-economic reforms from 1990 to 2011. 1775 students took part in an experiment. The tendency of decline of health of young people level is marked. It is set that principal reason of increase of morbidity is an unhealthy way of life of young people and low level of motive activity. The annual medical inspection of all of students, engaged in a physical culture and sport is recommended. The necessity of maintainance is marked for an educational process on a physical culture volume of employments in an amount 408 hours on 1, 2 and 3 courses. An increase of activity of students and efficiency of employments is possibly at the permanent improvement of financial base. It is recommended to organize in student dormitories sporting rooms with the proper equipment.

The silver fox (Vulpes vulpes) offers a novel model for studying the genetics of social behavior and animal domestication. Selection of foxes, separately, for tame and for aggressive behavior has yielded two strains with markedly different, genetically determined, behavioral phenotypes. Tame strain foxes are eager to establish human contact while foxes from the aggressive strain are aggressive and difficult to handle. These strains have been maintained as separate outbred lines for over 40 generations but their genetic structure has not been previously investigated. We applied a genotyping-by-sequencing (GBS) approach to provide insights into the genetic composition of these fox populations. Sequence analysis of EcoT22I genomic libraries of tame and aggressive foxes identified 48,294 high quality SNPs. Population structure analysis revealed genetic divergence between the two strains and more diversity in the aggressive strain than in the tame one. Significant differences in allele frequency between the strains were identified for 68 SNPs. Three of these SNPs were located on fox chromosome 14 within an interval of a previously identified behavioral QTL, further supporting the importance of this region for behavior. The GBS SNP data confirmed that significant genetic diversity has been preserved in both fox populations despite many years of selective breeding. Analysis of SNP allele frequencies in the two populations identified several regions of genetic divergence between the tame and aggressive foxes, some of which may represent targets of selection for behavior. The GBS protocol used in this study significantly expanded genomic resources for the fox, and can be adapted for SNP discovery and genotyping in other canid species.

During the second part of the twentieth century, Belyaev selected tame and aggressive foxes ( Vulpes vulpes), in an effort known as the 'farm-fox experiment', to recapitulate the process of animal domestication. Using these tame and aggressive foxes as founders of segregant backcross and intercross populations we have employed interval mapping to identify a locus for tame behavior on fox chromosome VVU12. This locus is orthologous to, and therefore validates, a genomic region recently implicated in canine domestication. The tame versus aggressive behavioral phenotype was characterized as the first principal component (PC) of a PC matrix made up of many distinct behavioral traits (e.g. wags tail; comes to the front of the cage; allows head to be touched; holds observer's hand with its mouth; etc.). Mean values of this PC for F1, backcross and intercross populations defined a linear gradient of heritable behavior ranging from tame to aggressive. The second PC did not follow such a gradient, but also mapped to VVU12, and distinguished between active and passive behaviors. These data suggest that (1) there are at least two VVU12 loci associated with behavior; (2) expression of these loci is dependent on interactions with other parts of the genome (the genome context) and therefore varies from one crossbred population to another depending on the individual parents that participated in the cross. [ABSTRACT FROM AUTHOR]

Abstract Background Two strains of the silver fox (Vulpes vulpes), with markedly different behavioral phenotypes, have been developed by long-term selection for behavior. Foxes from the tame strain exhibit friendly behavior towards humans, paralleling the sociability of canine puppies, whereas foxes from the aggressive strain are defensive and exhibit aggression to humans. To understand the genetic differences underlying these behavioral phenotypes fox-specific genomic resources are needed. Results cDNA from mRNA from pre-frontal cortex of a tame and an aggressive fox was sequenced using the Roche 454 FLX Titanium platform (> 2.5 million reads & 0.9 Gbase of tame fox sequence; >3.3 million reads & 1.2 Gbase of aggressive fox sequence). Over 80% of the fox reads were assembled into contigs. Mapping fox reads against the fox transcriptome assembly and the dog genome identified over 30,000 high confidence fox-specific SNPs. Fox transcripts for approximately 14,000 genes were identified using SwissProt and the dog RefSeq databases. An at least 2-fold expression difference between the two samples (p < 0.05) was observed for 335 genes, fewer than 3% of the total number of genes identified in the fox transcriptome. Conclusions Transcriptome sequencing significantly expanded genomic resources available for the fox, a species without a sequenced genome. In a very cost efficient manner this yielded a large number of fox-specific SNP markers for genetic studies and provided significant insights into the gene expression profile of the fox pre-frontal cortex; expression differences between the two fox samples; and a catalogue of potentially important gene-specific sequence variants. This result demonstrates the utility of this approach for developing genomic resources in species with limited genomic information.

A meiotic linkage map is essential for mapping traits of interest and is often the first step toward understanding a cryptic genome. Specific strains of silver fox (a variant of the red fox, Vulpes vulpes), which segregate behavioral and morphological phenotypes, create a need for such a map. One such strain, selected for docility, exhibits friendly dog-like responses to humans, in contrast to another strain selected for aggression. Development of a fox map is facilitated by the known cytogenetic homologies between the dog and fox, and by the availability of high resolution canine genome maps and sequence data. Furthermore, the high genomic sequence identity between dog and fox allows adaptation of canine microsatellites for genotyping and meiotic mapping in foxes. Using 320 such markers, we have constructed the first meiotic linkage map of the fox genome. The resulting sex-averaged map covers 16 fox autosomes and the X chromosome with an average inter-marker distance of 7.5 cM. The total map length corresponds to 1480.2 cM. From comparison of sex-averaged meiotic linkage maps of the fox and dog genomes, suppression of recombination in pericentromeric regions of the metacentric fox chromosomes was apparent, relative to the corresponding segments of acrocentric dog chromosomes. Alignment of the fox meiotic map against the 7.6x canine genome sequence revealed high conservation of marker order between homologous regions of the two species. The fox meiotic map provides a critical tool for genetic studies in foxes and identification of genetic loci and genes implicated in fox domestication. [ABSTRACT FROM AUTHOR]

Bioluminescence, which is a manifestation of the vital activity of an organism in the form of electromagnetic radiation in the visible area of the spectrum, is a highly important ecological and optical factor of the marine environment. Until recently, it was believed that microplankton - bacteria and dinoflagellates - exceptionally contribute to the formation of the bioluminescence field in the Black Sea, as well as in other regions of the World Ocean. However, the ctenophores  Mnemiopsis leidyi  A. Agassiz, 1865, and  Beroe ovata Mayer, 1912, which invaded the Black Sea in the 1980s-1990s, are also luminous organisms whose bioluminescence intensity is millions of times greater than that of most microplankton representatives. It is known that the characteristics of bioluminescence can reveal the state of the organism and, consequently, the state of the environment. At present, there is a fairly large number of works devoted to the physiology and ecology of the Black Sea ctenophores. In recent studies, the variability of light emission parameters of ctenophores following their functional state was revealed. Intensity and duration of light emission as parameters of the ctenophore bioluminescent signal as well as the influence of various abiotic and anthropogenic environmental factors on the ctenophore luminescence have been studied. However, the significance of bioluminescence for the living activity of ctenophores remains unclear. In connection with the above, it is extremely important to assess the ecological role of the bioluminescence of the Black Sea ctenophores., Competing Interests: Competing interestsThe authors declare no competing interests., (© International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)

The findings of the study on the impact of hypoxia on the glow of the Black Sea ctenophore Mnemiopsis leidyi A. Agassiz, 1865 of three size groups (20-30, 30-45, and 45-60 mm) were obtained under experimental conditions. Peculiarities of ctenophore bioluminescence were studied during mechanical and chemical stimulation under the conditions of normoxia (at an oxygen concentration of 5.6-6.7 mg O 2  L -1 ), moderate hypoxia (2.5-2.8 mg O 2  L -1 ), and acute hypoxia (1.2-1.5 mg O 2  L -1 ). An increase in the amplitude and energy of luminescence of the ctenophores mechanically and chemically stimulated was observed at an oxygen concentration of 1.2-1.5 mg O 2  L -1 (acute hypoxia) in two size groups in the lobate form (30-45 and 45-60 mm). The inhibition of amplitude, energy, and duration of the signal was registered in M. leidyi ctenophores at the transitional stage from larva to the lobate form under conditions of acute hypoxia. It was noted that in normoxia, the values of the amplitude and energy of the bioluminescent signal of M. leidyi increase along with a size growth of an individual. This phenomenon was observed both during mechanical and chemical stimulations. Under conditions of acute hypoxia, this trend was mainly preserved. The universality of the relation between the bioluminescence of the organisms and their bioenergetics is obvious. The bioluminescent system of ctenophores has the role of an antioxidant system and is engaged in the neutralization of reactive oxygen species (ROS), that is the process during which photons are emitted. The response of the bioluminescent system to a decrease in oxygen concentration can be associated with an increase in the production of ROS that provides high values of the ctenophore luminescence under hypoxic conditions., (© 2023 John Wiley & Sons Ltd.)