83 results on '"J, Cosme"'
Search Results
2. Hereditary angioedema: 24 years of experience in a Portuguese Reference Center
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C, Varandas, L, Esteves Caldeira, S L, Silva, C, Costa, R, Limão, M I, Silva, A, Lopes, J, Caiado, J, Cosme, E, Alonso, J, Marcelino, F, Cabral Duarte, N P, Fernandes, M, Neto, E, Pedro, M, Branco Ferreira, and A, Spínola Santos
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Immunology and Allergy - Abstract
Hereditary angioedema (HAE) poses a high burden of disease, being its epidemiological and clinical data heterogeneous among countries, with no recent published studies concerning Portuguese patients. Therefore, we aimed to raise awareness of HAE and to contribute to clinical knowledge. An observational, descriptive, retrospective, and cross-sectional study was performed, that included a cohort of 126 patients followed in a single Portuguese Center. We observed a high prevalence of HAE-C1-INH type II (45.2% of patients). Most HAE patients (67.4%) presented the initial manifestations of the disease before adulthood, at a mean age of 12.6 ± 8.4 years. However, we found a long delay in HAE diagnosis, especially in those without family history (mean 20.7 ± 17.3 years). Stress was the most common trigger, followed by trauma and infection. Symptoms involving different systems were increasingly reported with increased disease duration. Cutaneous symptoms (95.0%) were more frequent, followed by gastrointestinal (80.7%), and respiratory symptoms (50.4%). HAE symptoms led to abdominal surgery in 22 (17.5%) patients and induced laryngeal edema requiring intubation/tracheostomy in 8 (6.3%) patients. Most patients were under long-term prophylaxis, mainly with attenuated androgens (62.7% of patients).The correct distinction between HAE and other common causes of angioedema is critical, allowing reduction of diagnostic delay, improvement of adequate management, and ultimately improving outcomes and quality of life of HAE patients.
- Published
- 2022
3. Venom Immunotherapy: a 20-year experience with an ultra-rush protocol (210-min)
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J, Cosme, A, Spínola-Santos, M C, Pereira-Santos, and M, Pereira-Barbosa
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- 2019
4. Development of a Food Intake Estimation Tool: Collaborating with Nurses and Dietitians to Create a Visual Estimation Method for a Hospital Setting
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J. Cosme Rosa, Nicholas Rivera, J. Godinez Lopez, A. Carralero, M. Colón Rivera, L. Morales-Amador, P. Pagan Cruz, D. Berrios Irizarry, C. Sepulveda, Rémi Torres, and I. Carro Cruz
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Estimation ,Food intake ,Nutrition and Dietetics ,Hospital setting ,business.industry ,medicine ,Visual estimation ,General Medicine ,Medical emergency ,medicine.disease ,business ,Food Science - Published
- 2020
5. Allergic reactions after vaccination: translating guidelines into clinical practice
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A. Spínola-Santos, J. Cosme, Manuel Pereira-Barbosa, and M.C. Pereira-Santos
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business.industry ,Maintenance dose ,Significant difference ,Retrospective cohort study ,Honey bee ,Venom immunotherapy ,medicine.disease ,Sting ,Systemic reaction ,Anesthesia ,Immunology and Allergy ,Medicine ,business ,Anaphylaxis - Abstract
Summary Background. Ultra-rush (UR) are induction protocols used in venom immunotherapy (VIT). Objectives: To evaluate the adverse reactions during a 210-minutes UR and determine possible risk factors. Methods: Retrospective study of 129 patients submitted to UR with VIT in the last 20 years. Results: In 114 (88.4%) patients the 101.1 μg maintenance dose was reached in 210 minutes. Systemic reactions (SR) occurred in 22% of patients (71% mild). There were no severe SR, late reactions or fatalities. Adrenaline was administered in 10% of all UR. The SR were more frequent with honey bee VIT and had greater severity in the patients with a previous severe systemic sting reaction. No significant difference in the risk of SR was found with other demographic, clinical or laboratory factors. There were 5% of large local reactions (LLR), these being more frequent in females. Conclusion: Most SR during UR were mild with no need for adrenaline treatment. The honey bee venom and the severity of the anaphylaxis during the field sting were the only SR´s risk factors for systemic adverse reactions during the UR.
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- 2019
6. Compact Fluorescent Lamps, an Anticipatory Mind to Mercury
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J Alvarez-Caicoya, A J Cosme-Torres, and Eduardo I. Ortiz-Rivera
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Incandescent light bulb ,Waste management ,Strategy and Management ,chemistry.chemical_element ,Lower energy ,Automotive engineering ,Education ,law.invention ,Mercury (element) ,LED lamp ,Electric light ,chemistry ,law ,Environmental science ,Compact fluorescent lamp ,Electrical and Electronic Engineering - Abstract
The compact fluorescent lamp (CFL) was invented by Ed Hammer, an engineer working for General Electric, in response to the 1973 oil crisis and introduced worldwide in the 1980s. CFLs present an advantage to the consumer relative to traditional or incandescent bulbs. For instance, CFLs provide the same intensity of light as incandescent bulbs, but use about 75% less energy and generate approximately 75% less heat, cutting home cooling costs. Also, they last up to ten times longer than a standard incandescent bulb. CFLs also have a positive impact on the environment, because of its lower energy requirement, just one bulb can prevent more than 400 lbs of greenhouse gas emissions over its lifetime.
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- 2011
7. Cytochrome P450 CYP2D6 gene polymorphism and lung cancer susceptibility in Caucasians
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Sylvie Cénée, Jean-Jacques Lafitte, Catherine Spire, Isabelle Stücker, D. Marez, Legrand-Andréoletti M, Ph. Beaune, N. Sabbagh, F. Broly, Galais P, and J. Cosme
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Male ,Lung Neoplasms ,Genotype ,Locus (genetics) ,Biology ,digestive system ,White People ,Gene Frequency ,Genetics ,Humans ,General Pharmacology, Toxicology and Pharmaceutics ,Allele ,skin and connective tissue diseases ,Allele frequency ,Gene ,Alleles ,Polymorphism, Single-Stranded Conformational ,Gene Rearrangement ,Polymorphism, Genetic ,Gene rearrangement ,Lung cancer susceptibility ,Phenotype ,Cytochrome P-450 CYP2D6 ,Case-Control Studies ,Multigene Family ,Mutation ,France ,Restriction fragment length polymorphism ,Polymorphism, Restriction Fragment Length - Abstract
Many studies have been performed in an attempt to establish a link between the polymorphism of the cytochrome P450 CYP2D6 gene and the incidence of lung cancer. Nevertheless, whether or not this genetic polymorphism has a role in the development of the disease remains unclear. Recently, new advances in our knowledge of the CYP2D6 gene and its locus (CYP2D) have been achieved. In particular, CYP2D6 was found to be highly polymorphic and multiple novel mutations and allelic variants of the gene have been identified. In addition, a number of CYP2D rearrangements, including those with amplification of the gene, have been demonstrated. Taking this new information into account, we have reconsidered the potential influence of CYP2D6 polymorphism in lung cancer susceptibility by performing a comparative analysis of the overall mutational spectrum of CYP2D6 and of the rearrangements of CYP2D in 249 patients with lung cancer and in 265 control individuals matched on age, sex, hospital and residence area. For this purpose, a strategy based on SSCP analysis of the entire coding sequence of CYP2D6 and on RFLP analysis of the gene locus was carried out in DNA samples from each individual. Forty mutations occurring in various combinations on 42 alleles of the gene and 82 different genotypes were identified. No significant difference in the distribution of the mutations, alleles or genotypes was observed between the two groups, except a particular genotype (CYP2D6*1A/*2), which was more common in the sub-group of moderate smokers (< 30 pack-years) suffering from small cell carcinoma (Odds Ratio (OR) 3.6, 95% CI 1.1-11.9). When the phenotype was predicted according to genotype, only a trend toward a higher frequency of ultrarapid metabolizers in patients was obtained. In spite of a complete analysis of the CYP2D6 gene and its locus, this case-control study provides elements against an influence of the CYP2D6 polymorphism on lung cancer susceptibility.
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- 1998
8. [Computer model of 3D structure of cytochrome P450 2B4]
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A A, Sechenykh, A V, Dubanov, V S, Skvortsov, A S, Ivanov, A I, Archakov, P, Williams, J, Cosme, E F, Johnson, and D E, McRee
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Models, Molecular ,Cytochrome P-450 Enzyme System ,Molecular Sequence Data ,Computer Simulation ,Amino Acid Sequence ,Aryl Hydrocarbon Hydroxylases ,Steroid 21-Hydroxylase ,Cytochrome P450 Family 2 ,Sequence Alignment ,Protein Structure, Secondary - Abstract
Cytochromes P450 (CYPs) play an important role in the oxidative metabolism of xenobiotics. Three-dimensional structures of CYPs are needed to study structure-function relationships in their molecules and interaction with partner proteins. Experimental determination of eucaryotic CYPs 3D structures is difficult because of hydrophobic membrane anchors and surface hydrophobic regions that prevent their crystallization. Replacement of surface hydrophobic amino acids by hydrophilic residues without any changes in protein structure and function can help to solve this problem. Such modification can be proposed using the analysis of 3D model of protein. In this work computer aided 3D structure of microsomal P450 2B4 (CYP2B4) was modeled for the further prediction of surface mutations for hydrophilization of the protein surface. The model of 3D structure of CYP2B4 was constructed by homology with CYP2C5 Model optimization was made by energy minimization and molecular dynamics simulation of protein molecule in water environment. The model was verified by using special statistic software and by comparison with the experimental data on the substrate recognition site, redox-partner binding sites and chemical modification of the protein surface.
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- 2002
9. Mammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity
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P A, Williams, J, Cosme, V, Sridhar, E F, Johnson, and D E, McRee
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Mammals ,Models, Molecular ,Binding Sites ,Molecular Sequence Data ,Heme ,Crystallography, X-Ray ,Endoplasmic Reticulum ,Protein Structure, Secondary ,Cytochrome P-450 Enzyme System ,Microsomes ,Animals ,Amino Acid Sequence ,Steroid 21-Hydroxylase ,Cytochrome P450 Family 2 - Abstract
Microsomal cytochrome P450s participate in xenobiotic detoxification, procarcinogen activation, and steroid hormone synthesis. The first structure of a mammalian microsomal P450 suggests that the association of P450s with the endoplasmic reticulum involves a hydrophobic surface of the protein formed by noncontiguous portions of the polypeptide chain. This interaction places the entrance of the putative substrate access channel in or near the membrane and orients the face of the protein proximal to the heme cofactor perpendicular to the plane of the membrane for interaction with the P450 reductase. This structure offers a template for modeling other mammalian P450s and should aid drug discovery and the prediction of drug-drug interactions.
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- 2000
10. Engineering microsomal cytochrome P450 2C5 to be a soluble, monomeric enzyme. Mutations that alter aggregation, phospholipid dependence of catalysis, and membrane binding
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J, Cosme and E F, Johnson
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Sequence Homology, Amino Acid ,Protein Conformation ,Recombinant Fusion Proteins ,Cell Membrane ,Molecular Sequence Data ,Hydroxylation ,Protein Engineering ,Catalysis ,Cytochrome P-450 Enzyme System ,Solubility ,Microsomes ,Liposomes ,Escherichia coli ,Mutagenesis, Site-Directed ,Phosphatidylcholines ,Amino Acid Sequence ,Steroid 21-Hydroxylase ,Cytochrome P450 Family 2 ,Progesterone ,Protein Binding ,Subcellular Fractions - Abstract
Deletion of the N-terminal membrane-spanning domain from microsomal P450s 2C5 and 2C3 generates the enzymes, 2C5dH and 2C3dH, that exhibit a salt-dependent association with membranes indicating that they retain a monofacial membrane interaction domain. The two proteins are tetramers and dimers, respectively, in high salt buffers, and only 2C5dH requires phospholipids to reconstitute fully the catalytic activity of the enzyme. Amino acid residues derived from P450 2C3dH between residues 201 and 210 were substituted for the corresponding residues in P450 2C5 to identify those that would diminish the membrane interaction, the phospholipid dependence of catalysis, and aggregation of 2C5dH. Each of four substitutions, N202H, I207L, S209G, and S210T, diminished the aggregation of P450 2C5dH and produced a monomeric enzyme. The N202H and I207L mutations also diminished the stimulation of catalytic activity by phospholipid and reduced the binding of P450 2C5dH to phospholipid vesicles. The modified enzymes exhibit rates of progesterone 21-hydroxylation that are similar to that of P450 2C5dH. These conditionally membrane-bound P450s with improved solubility in high salt buffers are suitable for crystallization and structural determination by x-ray diffraction studies.
- Published
- 2000
11. Structure-function of cytochromes P450 and flavin-containing monooxygenases: implications for drug metabolism
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J R, Halpert, T L, Domanski, O, Adali, C P, Biagini, J, Cosme, E A, Dierks, E F, Johnson, J P, Jones, P, Ortiz de Montellano, R M, Philpot, O, Sibbesen, W K, Wyatt, and Z, Zheng
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Structure-Activity Relationship ,Cytochrome P-450 Enzyme System ,Pharmaceutical Preparations ,Flavins ,Animals ,Humans ,Mixed Function Oxygenases - Abstract
This article is a report on a symposium held at Experimental Biology '98 in San Francisco, California. Recent developments in site-directed mutagenesis, computer-modeling, and mechanistic analysis of cytochromes P450 and flavin-containing monooxygenases are described. A unifying theme is the elaboration of general approaches for understanding and predicting the function of individual forms of these enzymes. A related goal is the production of soluble forms of mammalian cytochromes P450 for X-ray crystallography.
- Published
- 1998
12. Heterologous expression of human drug-metabolizing enzymes
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F P, Guengerich, A, Parikh, E F, Johnson, T H, Richardson, C, von Wachenfeldt, J, Cosme, F, Jung, C P, Strassburg, M P, Manns, R H, Tukey, M, Pritchard, S, Fournel-Gigleux, and B, Burchell
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Pharmaceutical Preparations ,Humans ,Recombinant Proteins ,Enzymes - Abstract
This article is a report on a symposium held at the March 1997 meeting of the American Society for Pharmacology and Experimental Therapeutics in San Diego. Current developments in the heterologous expression of cytochrome P450, NADPH-cytochrome P450 reductase, glutathione transferase, and UDP-glucuronosyltransferase enzymes are described. Systems include bacteria, insect cells, and transient and stable mammalian cells. Uses of the products are described for discernment of which enzymes are involved in metabolism of drugs, genotoxicity assays, mutagenesis (for structure-activity relationships), large scale production of enzyme products, antibody production, and production of proteins for biophysical studies.
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- 1997
13. Microsomal P450 2C3 is expressed as a soluble dimer in Escherichia coli following modification of its N-terminus
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Toby Richardson, C von Wachenfeldt, J Cosme, and Eric F. Johnson
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Macromolecular Substances ,Dimer ,Detergents ,Molecular Sequence Data ,Biophysics ,medicine.disease_cause ,Biochemistry ,Oligomer ,chemistry.chemical_compound ,Structure-Activity Relationship ,Cytochrome P-450 Enzyme System ,medicine ,Escherichia coli ,Amino Acid Sequence ,Molecular Biology ,Histidine ,Alanine ,Cell Membrane ,Recombinant Proteins ,Cell Compartmentation ,Membrane ,chemistry ,Solubility ,Steroid 16-alpha-Hydroxylase ,Ionic strength ,Steroid Hydroxylases ,Heterologous expression ,Aryl Hydrocarbon Hydroxylases ,Genetic Engineering - Abstract
A hydrophobic segment present in the N-terminus of microsomal P450s is thought to serve as a membrane anchor. A variant of P450 2C3 was constructed, P450 2C3d, that lacked the putative membrane-spanning segment of the N-terminus, residues 3-20. This construct also incorporated substitutions of an alanine for 2Asp to facilitate expression in Escherichia coli and of serines for 24His and 25Gly to introduce a restriction site. P450 2C3d is expressed at relatively high levels in E. coli, 800-1200 nmol/liter of culture medium. In contrast to P450 2C3mod, which retains a membrane-spanning N-terminal sequence modified for expression in E. coli, the subcellular distribution of P450 2C3d in E. coli is dependent on the ionic strength of the buffer used for cell disruption. In low ionic strength buffers, 2C3d was mainly localized in the membrane fraction, whereas in buffers containing 1 M NaCl or 0.5 M KPi, P450 2C3d was predominantly found in the soluble fraction, indicating that deletion of the hydrophobic segment converted the intrinsic membrane protein to an extrinsic one. P450 2C3d was further modified by the incorporation of four histidine residues at the C-terminus (P450 2C3dH), and this enzyme could be purified in the absence of detergent using immobilized metal affinity chromatography following extraction from isolated membranes in high salt buffers. The catalytic properties of the purified, modified enzymes are similar to those of the native enzyme. Size-exclusion chromatography indicated that 2C3dH and 2C3d are predominantly dimers, whereas 2C3 is a larger oligomer (> 8-mer). Moreover, the detergents sodium cholate and Chaps each dissociate the dimers of 2C3dH to monomers at concentrations that do not alter the aggregation state of 2C3. These modifications are likely to facilitate attempts to crystallize the catalytic domains of microsomal P450s.
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- 1997
14. Identification of the highly polymorphic S-mephenytoin hydroxylase in humans
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P, Soucek, Z, Guo, P, Sandhu, M V, Martin, J, Cosme, P H, Beaune, and F P, Guengerich
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Cytochrome P-450 CYP2C19 ,Isoenzymes ,Polymorphism, Genetic ,Asian People ,Cytochrome P-450 Enzyme System ,Humans ,Aryl Hydrocarbon Hydroxylases ,Gene Expression Regulation, Enzymologic ,White People ,Mixed Function Oxygenases - Published
- 1996
15. CYP2D6 genotype and lung cancer risk according to histologic type and tobacco exposure
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Ph. Laurent, Denis Hémon, Sylvie Cénée, J. Cosme, Jean Bignon, B. Milleron, Isabelle Stücker, A. Depierre, and Ph. Beaune
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Adult ,Male ,Risk ,Cancer Research ,medicine.medical_specialty ,Pathology ,Lung Neoplasms ,Genotype ,Small-cell carcinoma ,Gastroenterology ,Mixed Function Oxygenases ,Cytochrome P-450 Enzyme System ,Internal medicine ,Epidemiology ,medicine ,Humans ,Lung cancer ,Aged ,business.industry ,Respiratory disease ,Smoking ,Cancer ,General Medicine ,Odds ratio ,Middle Aged ,medicine.disease ,Cytochrome P-450 CYP2D6 ,Adenocarcinoma ,business ,Polymorphism, Restriction Fragment Length - Abstract
Polymorphism for CYP2D6 was determined genetically as part of a hospital-based case-control study. The cases were males with a histologically confirmed lung cancer diagnosis, < 75 years old, and no previous cancer diagnosis. Male controls were matched for age, hospital and residence area. This study includes 301 cases and 310 controls. A DNA bank was established for 547 patients (89.5%), and genotypes for CYP2D6 were differentiated by the Heim and Meyer method for the DNA samples of 249 cases and 271 controls. Among the cases, the frequencies of homozygous for the wild-type (EM), heterozygous (HEM) and homozygous for the mutant alleles (PM) were 62%, 32% and 7%; among the controls: 57%, 37% and 6%. Using EM as the reference, and adjusting for age, hospital and residence, we estimated the odds ratios for the HEM group and the PM group at 0.8 (95% CI [0.5-1.2]) and 1.1 (95% CI [0.5-2.4]) respectively. The PM frequency among the cases of adenocarcinoma was twice as high as among the controls (OR = 1.8, 95% CI [0.7-4.9]). This result was not observed among squamous and small cell carcinoma (OR = 0.7, 95% CI [0.3-1.8]). Twelve different case-control studies on CYP2D6 and lung cancer have so far been performed; the ORs they estimate range from 0.1 to 2.0, with a median value of approximately 0.6. This result lends some support to the hypothesis that belonging to the PM group is associated with a slight protective effect against lung cancer, but does not take into account the possibility that results may vary according to histologic type. In this context, the suggestion of a positive relationship between CYP2D6 and adenocarcinoma seems to us to merit investigation.
- Published
- 1995
16. 365 Proteomic Characterization of the Cardiac Fibroblast Exosome
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A.O. Gramolini, Peter P. Liu, T. Kislinger, J. Cosme, V. Ignatchenko, and S. Principe
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Cardiac fibroblast ,business.industry ,Medicine ,Cardiology and Cardiovascular Medicine ,business ,Exosome ,Cell biology - Published
- 2012
17. Structural biology of cytochromes P450
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H.C. Angove, P. Day, P.A. Williams, D.M. Vinkovic, A. Ward, H. Jhoti, and J. Cosme
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chemistry.chemical_classification ,Biochemistry ,Structural biology ,Structural Biology ,Chemistry ,Metalloprotein ,Drug protein interactions ,Drug metabolism - Published
- 2005
18. Crystal structures of human cytochrome P450 2C9 and 3A4 with bound ligands
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Ian J. Tickle, A. Ward, P.A. Williams, H. Jhoti, D. Matak-Vinkovic, P. Day, and J. Cosme
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CYP3A4 ,Structural Biology ,Stereochemistry ,Chemistry ,Crystal structure ,Human cytochrome - Published
- 2004
19. Structure-function of cytochromes P450 and flavin-containing monooxygenases: implications for drug metabolism.
- Author
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R, Halpert J, L, Domanski T, O, Adali, P, Biagini C, J, Cosme, A, Dierks E, F, Johnson E, P, Jones J, P, Ortiz de Montellano, M, Philpot R, O, Sibbesen, K, Wyatt W, and Z, Zheng
- Abstract
This article is a report on a symposium held at Experimental Biology '98 in San Francisco, California. Recent developments in site-directed mutagenesis, computer-modeling, and mechanistic analysis of cytochromes P450 and flavin-containing monooxygenases are described. A unifying theme is the elaboration of general approaches for understanding and predicting the function of individual forms of these enzymes. A related goal is the production of soluble forms of mammalian cytochromes P450 for X-ray crystallography.
- Published
- 1998
20. Heterologous expression of human drug-metabolizing enzymes.
- Author
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P, Guengerich F, A, Parikh, F, Johnson E, H, Richardson T, C, von Wachenfeldt, J, Cosme, F, Jung, P, Strassburg C, P, Manns M, H, Tukey R, M, Pritchard, S, Fournel-Gigleux, and B, Burchell
- Abstract
This article is a report on a symposium held at the March 1997 meeting of the American Society for Pharmacology and Experimental Therapeutics in San Diego. Current developments in the heterologous expression of cytochrome P450, NADPH-cytochrome P450 reductase, glutathione transferase, and UDP-glucuronosyltransferase enzymes are described. Systems include bacteria, insect cells, and transient and stable mammalian cells. Uses of the products are described for discernment of which enzymes are involved in metabolism of drugs, genotoxicity assays, mutagenesis (for structure-activity relationships), large scale production of enzyme products, antibody production, and production of proteins for biophysical studies.
- Published
- 1997
21. Activity and specificity of a mouse monoclonal antibody to ferric aerobactin
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J Cosme, Antoine Andremont, A Deroussent, C Bohuon, D Le Roy, A Razafindratsita, and Dominique Expert
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medicine.drug_class ,Immunology ,Enzyme-Linked Immunosorbent Assay ,Hydroxamic Acids ,medicine.disease_cause ,Monoclonal antibody ,Microbiology ,Immunoglobulin G ,Epitope ,Virulence factor ,Mice ,chemistry.chemical_compound ,Enterobacteriaceae ,Antibody Specificity ,medicine ,Animals ,Escherichia coli ,Mice, Inbred BALB C ,biology ,Antibodies, Monoclonal ,biology.organism_classification ,Infectious Diseases ,chemistry ,biology.protein ,bacteria ,Aerobactin ,Parasitology ,Antibody ,Research Article - Abstract
We isolated a monoclonal antibody directed against the ferric complex of aerobactin purified from Escherichia coli KH576. This antibody, which we designated MAb AERO1, was identified as an immunoglobulin G, subtype 2. A competitive enzyme-linked immunosorbent assay with MAb AERO1 had a limit of 10 nM for the detection of purified ferric aerobactin and allowed detection of the crude aerobactin produced by various members of the family Enterobacteriaceae isolated from cancer patients with bacteremia. The only two other structurally related siderophores recognized by MAb AERO1 were ferric arthrobactin and ferrioxamine B. These results suggest that the epitope recognized by MAb AERO1 was the lysyl moiety of ferric aerobactin. We also showed that MAb AERO1 reduced the growth of an aerobactin-producing strain of E. coli in newborn calf serum, which indicates that it might be effective in reducing the severity of infections caused by bacteria for which the production of aerobactin is an important virulence factor.
22. Early surgery for failure after chemoradiation in operable thoracic oesophageal cancer. Analysis of the non-randomised patients in FFCD 9102 phase III trial: Chemoradiation followed by surgery versus chemoradiation alone
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Julie, Vincent, Christophe, Mariette, Denis, Pezet, Emmanuel, Huet, Franck, Bonnetain, Olivier, Bouché, Thierry, Conroy, Bernard, Roullet, Jean-François, Seitz, Jean-Philippe, Herr, Frédéric, Di Fiore, Jean-Louis, Jouve, Laurent, Bedenne, M, Ducreux, CHU Dijon, Centre Hospitalier Universitaire de Dijon - Hôpital François Mitterrand (CHU Dijon), Hôpital Claude Huriez [Lille], CHU Lille, CHU Clermont-Ferrand, Nutrition, inflammation et dysfonctionnement de l'axe intestin-cerveau (ADEN), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Normandie Université (NU), Institute for Research and Innovation in Biomedicine (IRIB), Normandie Université (NU)-Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Service de chirurgie digestive [CHU Rouen], Normandie Université (NU)-Normandie Université (NU)-CHU Rouen, Fédération Francophone de la Cancérologie Digestive, FFCD, Hôpital Robert Debré, Hôpital Robert Debré-Centre Hospitalier Universitaire de Reims (CHU Reims), Maladies chroniques, santé perçue, et processus d'adaptation (APEMAC), Université Paris Descartes - Paris 5 (UPD5)-Université de Lorraine (UL), Institut de Cancérologie de Lorraine - Alexis Vautrin [Nancy] (UNICANCER/ICL), UNICANCER, Hôpital de la Milétrie, Centre hospitalier universitaire de Poitiers (CHU Poitiers), Hôpital de la Timone [CHU - APHM] (TIMONE), Hôpital privé Sainte-Marie - Ramsay Générale de Santé, Hôpital Charles Nicolle [Rouen], Butel J, Desselle P, Brice JC, Tissot B, Votte-Lambert A, Joly J, Burtin P, Arnaud JP, Cellier P, Estermann F, Chauvet B, Maringe E, Ozanne F, Varlet F, Becouarn Y, Avril A, Rougier P, Nordlinger B, Vincendet M, Charneau J, Pillon D, Stremsdoerfer N, Pelletier M, Clavero-Fabri MC, Leduc B, Segol P, Argouach LP, Roussel A, Maurel J, Salame R, Lacourt J, Janoray P, Ruget O, Baudet-Klepping D, Dupont G, Bommelaer G, Ruszniewski P, Hammel P, Chaussade S, Dousset B, Denis B, Wagner JD, Tamby E, Petit T, Weiss AM, Barbare JC, Jouve JL, Phelip JM, Senesse P, Michiels C, Maingon P, Coudert B, Fraisse J, Queuniet A, Gasnault L, Gstach JH, Guichard B, Howaizi M, Geoffroy P, Picot C, Fournet J, Mousseau M, Stampfli C, Michel P, Doll J, Durand S, Buffet C, Triboulet JP, Denimal F, Hebbar M, Quandalle P, Mirabel X, Lledo G, Giovannini M, Souillac P, Untereiner M, Leroy-Terquem E, Lacroix H, Francois E, Lagasse JP, Breteau N, Legoux JL, Etienne JC, Delattre JF, Lubrano D, Levy-Chazal N, Palot JP, Nasca S, Demange L, Nguyen TD, Seng S, Michel P, Teniere P, Thevenet P, Le Brise H, Fleury J, Kammerer J, Cosme H, Novello P, Avignon JP, Berton C, Legueul, Parisot P, Aunis G, Vetter D, Platini C, Cals L, Rouhier D, Robin B, Champetier T, Cartalat A, Marchal C, Guillemin F, Flamenbaum M, Cassan D, Ducreux M., Hôpital Claude Huriez, Université de Lille, Droit et Santé-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), CHU - HÔTEL-DIEU Clermont-Ferrand, Service de chirurgie digestive [Rouen], CHU Rouen, Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Institut de Cancérologie de Lorraine - Alexis Vautrin (ICL), Centre Hospitalier Universitaire de Dijon - Hôpital François Mitterrand ( CHU Dijon ), Université de Lille, Droit et Santé-Centre Hospitalier Régional Universitaire [Lille] ( CHRU Lille ), Hôpital Robert Debré-Centre Hospitalier Universitaire de Reims ( CHU Reims ), Maladies chroniques, santé perçue, et processus d'adaptation. Approches épidémiologiques et psychologiques. ( APEMAC - EA 4360 ), Université Paris Descartes - Paris 5 ( UPD5 ) -Université de Lorraine ( UL ), Institut de Cancérologie de Lorraine - Alexis Vautrin ( ICL ), CHU de Poitiers, and Hôpital de la Timone [CHU - APHM] ( TIMONE )
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Male ,Cancer Research ,Time Factors ,Esophageal Neoplasms ,Kaplan-Meier Estimate ,MESH: Esophagectomy ,law.invention ,MESH: Proportional Hazards Models ,MESH : Adenocarcinoma ,0302 clinical medicine ,Randomized controlled trial ,law ,Risk Factors ,MESH : Esophagectomy ,MESH: Risk Factors ,MESH : Neoplasm Staging ,MESH : Female ,MESH : Carcinoma, Squamous Cell ,MESH: Treatment Outcome ,MESH: Chemoradiotherapy ,Randomised controlled trial ,education.field_of_study ,Hazard ratio ,[ SDV.SPEE ] Life Sciences [q-bio]/Santé publique et épidémiologie ,MESH: Carcinoma, Squamous Cell ,Chemoradiotherapy ,MESH : Chemoradiotherapy ,MESH: Neoplasm Staging ,MESH : Risk Factors ,Neoadjuvant Therapy ,3. Good health ,Oesophageal neoplasms ,Treatment Outcome ,Oncology ,Chemoradiation ,030220 oncology & carcinogenesis ,MESH: Esophageal Neoplasms ,Carcinoma, Squamous Cell ,030211 gastroenterology & hepatology ,Female ,Esophageal Squamous Cell Carcinoma ,France ,MESH : Time Factors ,medicine.medical_specialty ,MESH: Radiotherapy, Adjuvant ,MESH : Male ,Population ,MESH: Neoadjuvant Therapy ,Locally advanced ,MESH : Treatment Outcome ,Adenocarcinoma ,MESH : Radiotherapy, Adjuvant ,MESH : Kaplan-Meier Estimate ,03 medical and health sciences ,Early surgery ,medicine ,Humans ,Basal cell ,Salvage surgery ,education ,MESH : France ,Contraindication ,MESH: Kaplan-Meier Estimate ,Neoplasm Staging ,Proportional Hazards Models ,MESH: Humans ,business.industry ,MESH : Humans ,MESH: Adenocarcinoma ,MESH: Time Factors ,Cancer ,medicine.disease ,MESH : Proportional Hazards Models ,MESH: Male ,Surgery ,Esophagectomy ,MESH: France ,Radiotherapy, Adjuvant ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,MESH : Esophageal Neoplasms ,business ,MESH : Neoadjuvant Therapy ,MESH: Female - Abstract
International audience; BACKGROUND:Two randomised trials concerning thoracic oesophageal cancer concluded that for squamous cell carcinoma, chemoradiation alone leads to the same overall survival (OS) as chemoradiation followed by surgery. One of these trials, FFCD 9102, randomised only fit, compliant and operable responders to induction chemoradiation between continuation of chemoradiation and surgery. In the present analysis, the outcome in the patients not eligible for randomisation was calculated to determine if attempt of surgery should be recommended.METHODS:Eligible patients had operable T3-N0/N1-M0 thoracic oesophageal cancer. After initial chemoradiation, patients with no clinical response, or with contraindication to follow any attributed treatment, were not randomised. OS was studied first in the whole population of not randomised patients, and then specifically in clinical non-responders. The impact of surgery on OS was studied in these two populations.FINDINGS:Of the 451 registered patients in the trial, 192 were not randomised. Among them, 111 were clinical non-responders. Median OS was significantly shorter for non-randomised patients (11.5 months) than for randomised patients (18.9 months; p=0.0024). However, for the 112 non-randomised patients who underwent surgery, median OS was not different from that in randomised patients: 17.3 versus 18.9 months (p=0.58). Concerning clinical non-responders, median OS was longer for those who underwent surgery compared to non-operated patients: 17.0 versus 5.5 months (hazard ratio (HR)=0.39 [0.25-0.61]; p
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- 2015
23. Adsorption of Cr(VI) and phosphate anions by amino-functionalized palm oil fibers.
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Fotsing PN, Vieillard J, Bouazizi N, Samir B, Cosme J, Marquis V, Le Derf F, Ngueagni PT, Pakade V, Woumfo ED, Dotto GL, Dos Reis GS, Khan MR, and Manoharadas S
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- Adsorption, Kinetics, Spectroscopy, Fourier Transform Infrared, Water Purification methods, Hydrogen-Ion Concentration, Phosphates chemistry, Palm Oil chemistry, Chromium chemistry, Anions chemistry, Water Pollutants, Chemical chemistry
- Abstract
This work developed a novel sustainable adsorbent (PF-Aq) prepared by the amino-functionalization of palm oil fibers (PF). XPS, SEM/EDS, TGA/DSC, and FT-IR techniques proved the successful functionalization of the PF with the amino group. The PF-Aq adsorbent presents a high adsorption capacity for phosphate and Cr(VI) ions. Adsorption kinetics of the ions onto the PF-Aq followed the general-order models, with 240- and 300-min equilibrium times for phosphate and Cr(VI), respectively. The Freundlich equilibrium model can explain the adsorption of phosphate and Cr(VI) on the PF-Aq. Besides, the maximum adsorption capacities were 151.07 mg g
-1 for phosphate and 206.08 mg g-1 for Cr(VI). The best pH for the adsorption of both ions on PF-Aq was 4.0. Interestingly, adsorption was exothermic for phosphate and endothermic for Cr(VI). The adsorption capacities were reduced by 16% for phosphate and 10% for Cr(VI) after 5 adsorption-desorption cycles, demonstrating the good recyclability of the PF-Aq. It can be concluded that PF-Aq is a relevant adsorbent to uptake phosphate and Cr(VI) from water due to its high adsorption capacity, low cost, recyclability, availability, and fast kinetics. Finally, the excellent adsorption potential results from inserting amino groups in the PF, allowing electrostatic interactions between adsorbent and adsorbate., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2024
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24. Hereditary angioedema: 24 years of experience in a Portuguese reference center.
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Varandas C, Esteves Caldeira L, Silva SL, Costa C, Limão R, Silva MI, Lopes A, Caiado J, Cosme J, Alonso E, Marcelino J, Cabral Duarte F, Fernandes NP, Neto M, Pedro E, Branco Ferreira M, and Spínola Santos A
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- Humans, Portugal epidemiology, Female, Male, Retrospective Studies, Adult, Adolescent, Cross-Sectional Studies, Child, Young Adult, Middle Aged, Prevalence, Child, Preschool, Delayed Diagnosis, Angioedemas, Hereditary diagnosis, Angioedemas, Hereditary epidemiology
- Abstract
Summary: Background. Hereditary angioedema (HAE) poses a high burden of disease, being its epidemiological and clinical data heterogeneous among countries, with no recent published studies concerning Portuguese patients. Therefore, we aimed to raise awareness of HAE and to contribute to clinical knowledge. Methods. An observational, descriptive, retrospective, and cross-sectional study was performed, that included a cohort of 126 patients followed in a single Portuguese Center. Results. We observed a high prevalence of HAE-C1-INH type II (45.2% of patients). Most HAE patients (67.4%) presented the initial manifestations of the disease before adulthood, at a mean age of 12.6 ± 8.4 years. However, we found a long delay in HAE diagnosis, especially in those without family history (mean 20.7 ± 17.3 years). Stress was the most common trigger, followed by trauma and infection. Symptoms involving different systems were increasingly reported with increased disease duration. Cutaneous symptoms (95.0%) were more frequent, followed by gastrointestinal (80.7%), and respiratory symptoms (50.4%). HAE symptoms led to abdominal surgery in 22 (17.5%) patients and induced laryngeal edema requiring intubation/tracheostomy in 8 (6.3%) patients. Most patients were under long-term prophylaxis, mainly with attenuated androgens (62.7% of patients). Conclusions. The correct distinction between HAE and other common causes of angioedema is critical, allowing reduction of diagnostic delay, improvement of adequate management, and ultimately improving outcomes and quality of life of HAE patients.
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- 2024
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25. Managing systemic reactions and venom immunotherapy in vespid-venom allergy: observations from a retrospective study of Portuguese patients.
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Ferreira SC, Gomes M, Vieira J, Caldeira L, Silva MI, Ferreira MB, Pedro E, and Cosme J
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Summary: Background. Vespula spp. and Polistes spp. are relevant species in South Europe, with Vespa velutina nigrithorax (VVN) being considered a public health problem. We aimed to characterize a cohort of Portuguese patients referred for large local reaction (LLR) and/or systemic reaction (SR) to vespids. In patients treated with venom immunotherapy (VIT), induction protocol and frequency of adverse reactions were evaluated. Methods. Retrospective study including patients with LLR and SR to vespids referred to our Immunoallergology Department (2008-2022). Results. A total of 129 patients were evaluated, the majority were male adults (n = 77, 59.7%), from rural areas. From these, 51 patients had SR (Mueller classification: 7.8% grade I, 19.6% grade II, 37.3% grade III, 35.3% grade IV). We found no differences regarding the levels of total serum IgE, basal serum tryptase value, sIgE levels to the eliciting venom or their molecular components, regarding the severity of the SR that motivated the referral to our clinic. In the SR group, previous LLR Hymenoptera sting were reported in 15.7%. Thirty-eight patients (74.5%) initiated VIT: 22 with wasp venom, 14 with paper wasp venom and 2 with Vespa velutina venom. There was one mild systemic reaction, not requiring adrenaline and 4 LLR. Re-stings after VIT occurred in 16 patients, without any systemic or local reactions. Currently, eleven patients remain under VIT. Conclusions. Most vespid-venom allergic patients are male adults from rural areas. Sensitization to wasp venom was present in 52.9%, paper wasp in 33.3% and Vespa velutina in 13.7%. The frequency of adverse reactions during both induction and maintenance phases appears to be low. Despite a reduced sample size, our experience with VVN VIT, suggests its safety.
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- 2024
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26. Molecular sensitization profile to grass and olive pollens in Portugal.
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Cosme J, Pedro E, Pereira-Santos MC, Lopes A, Caiado J, and Paulino M
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Summary: Background. Grass and olive pollens have overlapping pollination periods and are common allergens in the Iberian Peninsula. The objective is to determine the sensitization pattern to major Phleum pratense and Olea europaea pollens in the Portuguese population with pollen allergic rhinitis (AR) using molecular allergen diagnosis (MAD). Methods. Seasonal AR patients (≥ 12 years), with positive skin prick tests (SPT) to Phleum and Olea were recruited from 16 centers. Using ALEX2, specific IgE to Phl p1, Phl p2, Phl p5, Phl p6, Phl p7, Phl p 12, Ole e1, Ole e7 and Ole e9 were determined. Immunoblotting of Olea allergic patients was performed. Results. Included 175 patients (55.4% female; mean age 31.6 ± 13.3 years; 85.7% adults; 40% asthmatic, Coast 28%/Inland 72% and North 29.1%/Centre 20.6%/South 50.3%). Considering Phleum MAD, 85.7% were sensitized to Phl p1, 45.7% to Phl p2, 50.3% to Phl p5, 45.7%, to Phl p6, 10.9% to Phl p7 and 22.9% to Phl p12. Sensitization to Ole e1 was found in 56.6%, to Ole e7 in 1.7% and Ole e9 in 3.4% patients. Sensitization to Phl p7 was more frequent in asthmatics (17.4% vs 6.6%; p = 0.044). Sensitization to Phl p5, Phl p6, Phl p12 and Ole e1 was more frequent in inland. Regarding sensitization patterns: 53.1% patients were sensitized to both species genuine´ sIgE, 38.3% to Phleum and 3.4% only to Olea species' sIgE. Immunoblotting of Olea allergic patients showed a high intensity band that may correspond to Ole e12. Conclusions. MAD showed "genuine" Grass and Olea sensitization in approximately 50% of our patients.
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- 2024
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27. Measuring aliphatic hydrocarbons in sediments by direct thermal desorption-gas chromatography-mass spectrometry: Matrix effects and quantification challenges.
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Portet-Koltalo F, Humbert K, Cosme J, Debret M, Morin C, and Le Gohlisse S
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- Limit of Detection, Hydrocarbons, Acyclic analysis, Microwaves, Gas Chromatography-Mass Spectrometry methods, Geologic Sediments chemistry, Geologic Sediments analysis
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Direct sample introduction thermal desorption (TD) coupled to GC-MS was investigated for the analysis of paraffinic hydrocarbons (HCs) from polluted sediments. TD-GC-MS is sometimes used for analysing paraffinic HCs from atmospheric particles but rarely for their direct desorption from sediments. So, the new TD methodology, applied to sediments, required development, optimization and validation. A definitive screening experimental design was performed to discriminate the critical factors on TD efficiency, from model sediments containing various organic matter (OM) amounts. Low molecular weight HCs had extraction behaviours markedly different from high molecular ones (HMW-HCs), but a compromise was found using very few sediment amount (5 mg), high temperature rate (55 °C min
-1 ) and final temperature (350 °C). Linear HCs (n-C10 to n-C40) could be quantified using the matrix-matched calibration method, with very low detection limits (3.8-13.4 ng). The amount of the overall paraffinic alkanes was also determined as a sum of unresolved components between predefined equivalent carbon ranges. The developed solventless methodology was compared to an optimized solvent microwave assisted extraction (MAE). Matrix effects could be higher for TD compared to MAE but it depended on sediment matrix. When matrix effect was strong, particularly on HMW-HCs signal depletion, a dilution with pure non-porous sand was favourable for accurate quantification. The sum of resolved and unresolved HCs gave comparable results between MAE and TD extractions, with an exception of alkanes greater than C30 which were less quantitatively extracted via TD. However, TD-GC-MS was more sensitive than MAE-GC-MS. So TD-GC-MS is useful for analyzing sediments containing a great range of paraffinic HCs (C9-C34) and it has the advantages of being fully automated, with few sample preparation and operator intervention, using very low amounts of solvent, and generating few wastes., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)- Published
- 2024
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28. Successful removal of fluoride from aqueous environment using Al(OH) 3 @AC: column studies and breakthrough curve modeling.
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Bakhta S, Sadaoui Z, Bouazizi N, Samir B, Cosme J, Allalou O, Le Derf F, and Vieillard J
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In this study, we discuss the removal of fluoride from water through column adsorption methods using Al(OH)
3 @AC as a functional granular activated carbon. The height of the bed, fluoride concentration, and flow rate are the experimental factors used to obtain the breakthrough curves. As the flow rate increased, the breakthrough and saturation times decreased. The analysis of simplified column models, such as the Adams-Bohart, Thomas, and Yoon-Nelson models, revealed that the Clark model best described the adsorption process when fitting the experimental data. The obtained breakthrough curves agreed with the corresponding experimental data. The highest capacity for adsorption obtained during the column procedure was found to be 41.84 mg g-1 with a bed height of 3 cm, an initial fluoride concentration of 10 mg L-1 and a flow rate of 7.5 mL min-1 ., Competing Interests: There are no relevant financial or non-financial interests to declare for the authors., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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29. Increase over time of antibody levels 3 months after a booster dose as an indication of better protection against Omicron infection.
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Bingula R, Chabrolles H, Bonnet B, Archimbaud C, Brebion A, Cosme J, Ollier A, Dutheil F, Junda M, Mirand A, Regagnon C, Vidal M, Henquell C, and Evrard B
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- Humans, 2019-nCoV Vaccine mRNA-1273, SARS-CoV-2, RNA, Messenger, Vaccination, Immunoglobulin G, Antibodies, Viral, BNT162 Vaccine, COVID-19 prevention & control
- Abstract
The third, "booster", vaccination increases the overall immune response against SARS-CoV-2 variants. However, after the initial peak at around 3 weeks post-vaccination, anti-spike antibody levels decline. Post-booster kinetics of cellular response has been less investigated and there is no documented evidence of a true boosting effect. Furthermore, multiple studies underline the less effective immune responses against Omicron, the latest variant of concern, at both humoral and cellular levels. In this letter, we analyse humoral (anti-RBD IgG levels) and cellular (IFN-γ release assay) immune response in 205 health care workers 3 weeks and 3 months after administration of an mRNA-based booster dose, either mRNA-1273 or BNT162b2. Since all subjects were SARS-CoV-2 infection-naïve, we also looked at the incidence of Omicron infection between 3 and 6 months post-booster.At both timepoints, 3x mRNA-1273 vaccination had the highest overall antibody and IFN-γ levels, followed by 3x BNT162b2 vaccination and heterologous mRNA-based regimens. Heterologous ChAdOx1-mRNA-based regimen had the lowest antibody levels while cellular response equal to that of 3x BNT162b2 vaccination and heterologous mRNA-based regimens. Our results show that both humoral and cellular responses waned at 3 months for all vaccination regimens. However, we identified three trajectories of dosage variation. Interestingly, the subgroup of subjects with increasing anti-RBD IgG levels over time had a lower incidence of Omicron infection. Whether increasing humoral response at 3 months post-booster is more indicative of protection than a high initial peak remains to be confirmed in a larger cohort.
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- 2023
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30. Investigation of machine learning algorithms for taxonomic classification of marine metagenomes.
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Park H, Lim SJ, Cosme J, O'Connell K, Sandeep J, Gayanilo F, Cutter GR Jr, Montes E, Nitikitpaiboon C, Fisher S, Moustahfid H, and Thompson LR
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- Models, Biological, Neural Networks, Computer, Machine Learning, Classification methods, Aquatic Organisms, Metagenome genetics, Microbiota genetics
- Abstract
Importance: Taxonomic profiling of microbial communities is essential to model microbial interactions and inform habitat conservation. This work develops approaches in constructing training/testing data sets from publicly available marine metagenomes and evaluates the performance of machine learning (ML) approaches in read-based taxonomic classification of marine metagenomes. Predictions from two models are used to test accuracy in metagenomic classification and to guide improvements in ML approaches. Our study provides insights on the methods, results, and challenges of deep learning on marine microbial metagenomic data sets. Future machine learning approaches can be improved by rectifying genome coverage and class imbalance in the training data sets, developing alternative models, and increasing the accessibility of computational resources for model training and refinement., Competing Interests: The authors declare no conflict of interest.
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- 2023
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31. Hypersensitivity to Vespa velutina nigrithorax: an emerging problem in Portugal?
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Esteves Caldeira L, Silva MIT, Pedro E, and Cosme J
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- Animals, Humans, Portugal epidemiology, Wasp Venoms, Arthropod Venoms, Wasps, Hypersensitivity
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- 2023
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32. Herbs carbonization and activation for fast sorption of nitrate ions: a new challenge for a full treatment of groundwater pollution.
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Vieillard J, Bouazizi N, Fotsing PN, Samir B, Raguillet K, Cosme J, Serhal CA, Mignot M, Bette MS, Auger P, Dotto GL, and Le Derf F
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- Nitrates, Environmental Pollution, Charcoal, Adsorption, Kinetics, Water Pollutants, Chemical, Groundwater, Ammonium Compounds
- Abstract
The evolution of low-cost ecotechnologies in water treatment and purification is highly increased. Face to the growing global demand for eco-friendly water treatment materials, the non-valorized herb-based biomass covering a large area could be a promising alternative. Herbs (HB) are currently one of the cheapest biomasses. Therefore, the utilization of HB for environmental applications is relevant. HB was treated and activated in this work to produce an eco-friendly adsorbent for nitrate removal from groundwater. HB was treated with modified carbonization at 220 °C to produce highly reactive biochar (BCH). Ammonium groups (AM) are immobilized covalently over the BCH surface, and then, the resulting materials BCH-AM are fully characterized. Results showed that ammonium is successfully grafted at the BCH surface, producing a highly stable material. Measurements on nitrate ion adsorption revealed that BCH-AM are of great interest as 80% of nitrate ions (NO
3 - ) were removed. Importantly, the eco-friendly BCH-AM demonstrated the ability to easily desorb the nitrate ions using Na2 CO3 as a green eluent. Parametric studies confirmed the effectiveness of the prepared adsorbent and approved that the adsorption occurred by electrostatic interactions. To demonstrate the performance of the adsorbent, BCH-AM was evaluated to remove NO3 - from groundwater upstream in a water treatment plant. This work opens an immense perspective for herb biomass to be the actual challenge to resolve environmental problems., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2023
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33. Hypersensitivity to Non-Steroidal Anti-Inflammatory Drugs on a pediatric Portuguese cohort.
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Silva MIT, Cosme J, Lorenzo C, Virtuoso J, Gomes R, Pedro E, Neves AM, and Lopes A
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Summary: Background. Non-steroidal anti-inflammatory drugs (NSAID)/analgesics (paracetamol) are among the most common causes of drug hypersensitivity reactions in children, with a reported prevalence of around 0.3% in the pediatric population. Paracetamol and ibuprofen are the most commonly reported culprits in the pediatric population. Our objective was to describe the allergy workup to NSAID/paracetamol of a pediatric population monitored in an allergy outpatient clinic. Methods. Retrospective observational study by consulting the medical records of patients evaluated in a pediatric outpatient clinic with history of NSAID/paracetamol, between January 2016 to August 2022. Results. A total of 43 patients have been evaluated for NSAID/paracetamol suspected allergy: 53.5% females, mean age of 9.8 ± 5.1 years, 47.7% atopic. The drugs reported as culprits were: ibuprofen (75.6%), paracetamol (17.8%), metamizole (4.4%) and naproxen (2.2%) and clinical manifestations were mainly urticaria/angioedema and maculopapular exanthema. Skin tests were performed in 7 patients: paracetamol (n = 5) and metamizole (n = 2), which were all negative. Fourty-six drug provocation tests were performed: 28 with the culprit drug and 18 with an alternative one; only 2 were positive (ibuprofen - culprit NSAID group): one immediate periorbital angioedema and one delayed lip edema with oropharyngeal tightness. Conclusions. The investigation of allergy to NSAID/paracetamol in children remains a challenge. In our population, ibuprofen was the most common NSAID reported. There were only 2 (4.3%) mild reactions on DPT. We could allow the use of the culprit NSAID/analgesic in 11 patients and an alternative one in 9 patients. This study highlights the importance of DPT in children for a correct diagnosis of NSAID hypersensitivity and selection of an alternative drug.
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- 2023
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34. Vitamin D Toxicity from an Unusual and Unexpected Source: A Report of 2 Cases.
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Silva C, Fung AWS, Masson V, Assen K, Ward V, McKenzie J, Blydt-Hansen TD, Cosme J, van der Gugten G, Barakauskas VE, and Fox DA
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- Male, Humans, Adolescent, Calcium, Creatine, Vitamin D adverse effects, Vitamins adverse effects, Dietary Supplements adverse effects, Hypercalcemia chemically induced, Acute Kidney Injury chemically induced
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Introduction: Hypervitaminosis D is a relatively uncommon etiology of hypercalcemia. Toxicity is usually caused by very high doses, mostly secondary to erroneous prescription or administration of vitamin D, and less commonly, contaminated foods or manufacturing errors of vitamin D-containing supplements., Case Presentation: A 16-year-old male, previously healthy, presented with 2-week history of nonspecific symptoms (fatigue, gastrointestinal complaints). Investigations showed acute kidney injury and hypercalcemia (total calcium 3.81 mmol/L). Further diagnostic workup revealed markedly elevated 25-hydroxyvitamin D levels (1,910 nmol/L). He denied taking any vitamin D supplements; however, he reported consumption of creatine and protein supplements. Mass spectrometry analysis of the creatine supplement estimated a vitamin D content of 425,000 IU per serving (100 times the upper tolerable daily dose). A few months later, another previously healthy adolescent presented with severe hypercalcemia and acute kidney injury secondary to hypervitaminosis D. He was also using a creatine supplement, from the same manufacturer brand and lot. Both patients were treated with intravenous hydration, calcitonin, and pamidronate. They maintained normocalcemia after their initial presentation but required low-calcium diets and laboratory testing for months after this exposure., Discussion/conclusion: We present 2 cases of hypervitaminosis D caused by a manufacturing error of a natural health product which did not claim to contain vitamin D. The use of dietary supplements is highly prevalent; this should be incorporated while taking medical history, and considered a potential source of toxicity when an alternative source cannot be found, regardless of the product label., (© 2022 S. Karger AG, Basel.)
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- 2023
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35. Direct thermal desorption-gas chromatography-tandem mass spectrometry versus microwave assisted extraction and GC-MS for the simultaneous analysis of polyaromatic hydrocarbons (PAHs, PCBs) from sediments.
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Humbert K, Debret M, Morin C, Cosme J, and Portet-Koltalo F
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- Gas Chromatography-Mass Spectrometry methods, Microwaves, Solvents chemistry, Tandem Mass Spectrometry methods, Polychlorinated Biphenyls analysis, Polycyclic Aromatic Hydrocarbons analysis
- Abstract
Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) are regulated contaminants usually investigated in sediments. Conventional approaches often use GC-MS to analyse them with a preliminary extraction step which can be solvent- and time-consuming. Here two extraction methodologies were optimized using experimental designs, and compared: microwave assisted extraction (MAE) and thermal desorption (TD); the latter was rarely used for sediments analyses. Several factors that may influence extraction recoveries were studied including matrix parameters (mass, organic matter (OM) content) and processing parameters. A definitive screening design DSD was performed to screen the 6 most influencing factors and model the extraction recoveries using TD. Whatever the OM content, a minimum sediment mass (5 mg) was better for an optimal extraction, with a minimum temperature rate (15 °C min
-1 ), a maximum final temperature (350 °C) associated with a minimum hold time (5 min), and a maximum vent flow (150 mL min-1 ) between the TD unit and the cryogenic trap. Thereafter matrix effects were evaluated using standard addition, and quality assurance and control were implemented for comparing MAE and TD. TD-GC-MS/MS sensitivity was higher than MAE-GC-MS with detection limits in the range 5-1160 pg and 20-125 pg for PAHs and PCBs, respectively. When considering the appropriate strategy for quantification, TD was also reliable for sediments analysis. Although MAE was less sensitive to matrix effects, TD could significantly improve the analytical process, due to direct coupling with GC-MS/MS and complete automation. Moreover, TD offered possible higher spatial resolution than MAE, particularly for sediment cores analysis, due to the 1000-times lower sample size. At last, TD-GC-MS/MS appeared as a greener analytical procedure., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
36. Petroleum in Pesticides: A Need to Change Regulatory Toxicology.
- Author
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Jungers G, Portet-Koltalo F, Cosme J, and Seralini GÉ
- Abstract
Toxicological investigations of pesticides largely focus on the declared active ingredient, which constitutes only between a few percent to around 50% of the total formulation. The complete formulations are unknown. For each declared active ingredient, there are dozens or hundreds of formulations. We demonstrate that petroleum has always been and is still always in pesticides. Gas chromatography and mass spectrometry (GC-MS) were applied for 24 pesticides. The measured compounds were the 16-priority polycyclic aromatic hydrocarbons (PAHs). The ratio of the PAHs to the threshold of toxicity was from 2.16 to 8288 times. The levels and distribution of PAHs per pesticide were different. Petroleum residues appear to be a waste product. The declared active component is taken alone for toxicity calculations, such as the acceptable daily intake (ADI). The PAHs with 2-3 cycles are more represented in pesticides than those with 4-6 cycles, which underlines that the petroleum residues appear to come mainly from crude unburned material. The ADI should be divided by 1000 if it is considered that petroleum residues amplify the toxicity by 1000. The admixture of PAHs in pesticides can be highly carcinogenic or toxic in the long term, even more than the declared active ingredient itself.
- Published
- 2022
- Full Text
- View/download PDF
37. Utility of the Basophil Activation Test Using Gly m 4, Gly m 5 and Gly m 6 Molecular Allergens for Characterizing Anaphylactic Reactions to Soy.
- Author
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Evrard B, Cosme J, Raveau M, Junda M, Michaud E, and Bonnet B
- Abstract
There are two major clinically described forms of IgE-dependent soy allergy: (i) a primary dietary form, linked to sensitization against soy storage proteins Gly m 5 and Glym 6, and (ii) a form included in birch-soy syndromes linked to Gly m 4, a PR-10-like allergen. This second form sometimes causes severe systemic reactions, even anaphylaxis, especially on consuming certain forms of soy such as soymilks or smoothies. Skin prick tests and specific IgE assays against soy whole extracts lack sensitivity. Assays of anti-Gly m 4, Gly m 5 and Gly m 6 specific IgEs have been developed to overcome this obstacle, but they unfortunately lack specificity, especially for anti-Gly m 4. We hypothesized that the basophil activation test (BAT) using molecular soy allergens Gly m 4, Gly m 5 and Gly m 6 would both remedy the lack of sensitivity of other tests and offer, through its mechanistic contribution, greater specificity than the assay of anti-Gly m 4 specific IgEs. This would enable the two types of soy allergy to be separately identified. In a characteristic clinical example of PR-10-induced anaphylactic reaction after consuming soymilk, we report preliminary results of Gly m 4-exclusive positivity of BAT supporting our hypothesis. It will be necessary to confirm these results on more patients in subsequent studies, and to specify the place of the BAT in an overall diagnostic strategy. Meanwhile, soy BAT using molecular allergens is a promising diagnostic tool for soy allergy and probably also for follow-up in specific immunotherapies., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Evrard, Cosme, Raveau, Junda, Michaud and Bonnet.)
- Published
- 2022
- Full Text
- View/download PDF
38. Comparative T and B immune responses of four different anti-COVID-19 vaccine strategies 6 months after vaccination.
- Author
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Bonnet B, Chabrolles H, Archimbaud C, Brebion A, Godignon M, Dutheil F, Lambert C, Cosme J, Mirand A, Ollier A, Pereira B, Regagnon C, Vidal M, Evrard B, and Henquell C
- Subjects
- Antibodies, Viral, Humans, Immunity, Immunity, Cellular, Immunity, Humoral, SARS-CoV-2, Spike Glycoprotein, Coronavirus, Vaccination, COVID-19 prevention & control, COVID-19 Vaccines
- Abstract
Competing Interests: Declaration of Competing Interest Authors state no conflict of interest.
- Published
- 2022
- Full Text
- View/download PDF
39. Decline of Humoral and Cellular Immune Responses Against SARS-CoV-2 6 Months After Full BNT162b2 Vaccination in Hospital Healthcare Workers.
- Author
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Bonnet B, Chabrolles H, Archimbaud C, Brebion A, Cosme J, Dutheil F, Lambert C, Junda M, Mirand A, Ollier A, Pereira B, Regagnon C, Vidal M, Evrard B, and Henquell C
- Subjects
- Antibodies, Viral, BNT162 Vaccine, COVID-19 Vaccines, Health Personnel, Hospitals, Humans, Immunity, Cellular, Middle Aged, Vaccination, Vaccines, Synthetic, mRNA Vaccines, COVID-19 prevention & control, SARS-CoV-2
- Abstract
Clinical trials and real-world evidence on COVID-19 vaccines have shown their effectiveness against severe disease and death but the durability of protection remains unknown. We analysed the humoral and T-cell immune responses in 110 healthcare workers (HCWs) vaccinated according to the manufacturer's recommended schedule of dose 2 three weeks after dose 1 from a prospective on-going cohort in early 2021, 3 and 6 months after full vaccination with the BNT162b2 mRNA vaccine. Anti-RBD IgG titres were lower in HCWs over 60 years old 3 months after the second dose (p=0.03) and declined in all the subjects between 3 and 6 months with a median percentage change of -58.5%, irrespective of age and baseline comorbidities. Specific T-cell response measured by IGRA declined over time by at least 42% (median) in 91 HCWs and increased by 33% (median) in 17 others. Six HCWs had a negative T-cell response at 6 months. Ongoing follow-up should provide correlates of long-term protection according to the different immune response profiles observed. COVIDIM study was registered under the number NCT04896788 on clinicaltrials.gov., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Bonnet, Chabrolles, Archimbaud, Brebion, Cosme, Dutheil, Lambert, Junda, Mirand, Ollier, Pereira, Regagnon, Vidal, Evrard and Henquell.)
- Published
- 2022
- Full Text
- View/download PDF
40. Severe COVID-19 is characterized by the co-occurrence of moderate cytokine inflammation and severe monocyte dysregulation.
- Author
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Bonnet B, Cosme J, Dupuis C, Coupez E, Adda M, Calvet L, Fabre L, Saint-Sardos P, Bereiziat M, Vidal M, Laurichesse H, Souweine B, and Evrard B
- Subjects
- Aged, COVID-19 complications, COVID-19 virology, Cytokine Release Syndrome etiology, Female, HLA-DR Antigens metabolism, Humans, Intensive Care Units, Interleukin-6 blood, Male, Middle Aged, Monocytes cytology, Monocytes immunology, Prospective Studies, SARS-CoV-2 isolation & purification, Severity of Illness Index, COVID-19 pathology, Cytokines blood, Monocytes metabolism
- Abstract
Background: SARS-CoV-2 has been responsible for considerable mortality worldwide, owing in particular to pulmonary failures such as ARDS, but also to other visceral failures and secondary infections. Recent progress in the characterization of the immunological mechanisms that result in severe organ injury led to the emergence of two successive hypotheses simultaneously tested here: hyperinflammation with cytokine storm syndrome or dysregulation of protective immunity resulting in immunosuppression and unrestrained viral dissemination., Methods: In a prospective observational monocentric study of 134 patients, we analysed a panel of plasma inflammatory and anti-inflammatory cytokines and measured monocyte dysregulation via their membrane expression of HLA-DR. We first compared the results of patients with moderate forms hospitalized in an infectious disease unit with those of patients with severe forms hospitalized in an intensive care unit. In the latter group of patients, we then analysed the differences between the surviving and non-surviving groups and between the groups with or without secondary infections., Findings: Higher blood IL-6 levels, lower quantitative expression of HLA-DR on blood monocytes and higher IL-6/mHLA-DR ratios were statistically associated with the risk of severe forms of the disease and among the latter with death and the early onset of secondary infections., Interpretation: The unique immunological profile in patients with severe COVID-19 corresponds to a moderate cytokine inflammation associated with severe monocyte dysregulation. Individuals with major CSS were rare in our cohort of hospitalized patients, especially since the use of corticosteroids, but formed a very severe subgroup of the disease., Funding: None., Competing Interests: Declaration of Competing Interest Dr. Bonnet reports non-financial support from THE BINDING SITE GROUP LTD, non-financial support from DIASORIN SA, non-financial support from Werfen, outside the submitted work. Prof. SOUWEINE reports personal fees from MSD, non-financial support from TTM BARD, personal fees from SANOFI, personal fees from LABORATOIRE AGUETTANT, outside the submitted work. All other authors have no conflicts of interest to disclose., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
41. Molecular Profile of Sensitization to Dermatophagoides pteronyssinus Dust Mite in Portugal.
- Author
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Limão R, Spínola Santos A, Araújo L, Cosme J, Inácio F, Tomaz E, Ferrão A, Santos N, Sokolova A, Môrete A, Falcão H, Cunha L, Ferreira A, Bras A, Ribeiro F, Lozoya C, Leiria Pinto P, Prates S, Plácido J, Coimbra A, Taborda-Barata L, Pereira Santos MC, Pereira Barbosa M, and Pineda F
- Subjects
- Adult, Allergens, Animals, Dust, Female, Humans, Immunoglobulin E, Male, Portugal epidemiology, Skin Tests methods, Antigens, Dermatophagoides, Dermatophagoides pteronyssinus
- Abstract
Background and Objectives: To analyze component-resolved diagnosis of sensitization to Dermatophagoides pteronyssinus (Der p) in patients with respiratory allergy and the association between diagnostic findings and clinical severity in different geographical areas., Methods: The study population comprised 217 patients (mean age, 25.85 [12.7] years; 51.16% female) selected from 13 centers in Portugal (5 from the North, n=65). All had allergic rhinitis with or without asthma and positive skin prick test results to at least 1 dust mite. Specific IgE (sIgE) to Der p, Dermatophagoides farinae, Lepidoglyphus destructor, Der p 1, Der p 2, Der p 10, and Der p 23 was determined using ImmunoCAP. The Mann-Whitney test was applied for the following comparisons: rhinitis vs rhinitis and asthma; mild vs moderate-to-severe rhinitis; North vs South., Results: The prevalence of sensitization was 98.2% for Der p, and 72.4%, 89.4%, 9.7%, and 77% for Der p 1, Der p 2, Der p 10, and Der p 23, respectively. The corresponding median sIgE levels were 8.56, 17.7, 0.01, and 3.95 kUA/L. sIgE to all allergens was higher in patients with moderate-to-severe rhinitis and rhinitis with asthma (nonsignficant). Concentrations of sIgE to Der p 2 were significantly higher in the South than in the North (P=.0496)., Conclusion: The most common sensitization in Portugal was to Der p. The highest prevalence and median sIgE level were observed for Der p 2. All sIgE values for molecular components were higher in more symptomatic patients (nonsignificant). Concentrations of sIgE to Der p 2 were higher in the South, probably because of the warmer temperature and/or the larger sample size.
- Published
- 2021
- Full Text
- View/download PDF
42. REEP5 depletion causes sarco-endoplasmic reticulum vacuolization and cardiac functional defects.
- Author
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Lee SH, Hadipour-Lakmehsari S, Murthy HR, Gibb N, Miyake T, Teng ACT, Cosme J, Yu JC, Moon M, Lim S, Wong V, Liu P, Billia F, Fernandez-Gonzalez R, Stagljar I, Sharma P, Kislinger T, Scott IC, and Gramolini AO
- Subjects
- Animals, Calcium metabolism, Cells, Cultured, Endoplasmic Reticulum Stress, Gene Knockout Techniques, Gene Silencing, Heart growth & development, Heart Diseases metabolism, Heart Diseases pathology, Heart Diseases physiopathology, Humans, Intracellular Membranes metabolism, Intracellular Membranes pathology, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Myocardial Contraction, Myocytes, Cardiac metabolism, Myocytes, Cardiac physiology, Sarcoplasmic Reticulum genetics, Sarcoplasmic Reticulum metabolism, Zebrafish, Heart physiopathology, Membrane Proteins deficiency, Sarcoplasmic Reticulum pathology
- Abstract
The sarco-endoplasmic reticulum (SR/ER) plays an important role in the development and progression of many heart diseases. However, many aspects of its structural organization remain largely unknown, particularly in cells with a highly differentiated SR/ER network. Here, we report a cardiac enriched, SR/ER membrane protein, REEP5 that is centrally involved in regulating SR/ER organization and cellular stress responses in cardiac myocytes. In vitro REEP5 depletion in mouse cardiac myocytes results in SR/ER membrane destabilization and luminal vacuolization along with decreased myocyte contractility and disrupted Ca
2+ cycling. Further, in vivo CRISPR/Cas9-mediated REEP5 loss-of-function zebrafish mutants show sensitized cardiac dysfunction upon short-term verapamil treatment. Additionally, in vivo adeno-associated viral (AAV9)-induced REEP5 depletion in the mouse demonstrates cardiac dysfunction. These results demonstrate the critical role of REEP5 in SR/ER organization and function as well as normal heart function and development.- Published
- 2020
- Full Text
- View/download PDF
43. Practice of spirometry among physicians caring for children with asthma in Portugal - The EspiroPed survey.
- Author
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Constant C, Cosme J, Fernandes RM, Fonte P, Fonseca JA, Alves C, and Bandeira T
- Subjects
- Asthma epidemiology, Child, Humans, Incidence, Portugal epidemiology, Surveys and Questionnaires, Asthma diagnosis, Physicians statistics & numerical data, Spirometry statistics & numerical data
- Published
- 2020
- Full Text
- View/download PDF
44. Hospitalizations due to Angioedema without Urticaria in a Portuguese Center: Five Year Retrospective Study.
- Author
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Cosme J, Spínola A, Ferreira MB, and Barbosa MP
- Subjects
- Adolescent, Adult, Age Distribution, Aged, Aged, 80 and over, Angioedema etiology, Angioedemas, Hereditary epidemiology, Angiotensin-Converting Enzyme Inhibitors adverse effects, Anti-Inflammatory Agents, Non-Steroidal adverse effects, Child, Female, Humans, Incidental Findings, Length of Stay, Male, Middle Aged, Portugal epidemiology, Retrospective Studies, Sex Distribution, Thrombolytic Therapy adverse effects, Time Factors, Young Adult, Angioedema epidemiology, Hospitalization statistics & numerical data
- Abstract
Introduction: Hospitalizations due to angioedema are important especially in debilitating or life-threatening situations. The aim of this study was to evaluate the frequency and etiology of angioedema without urticaria in hospital admissions., Material and Methods: The admissions between 2009 and 2013 in Centro Hospitalar Lisboa Norte with a diagnosis grouped under the ICD9 codes of angioedema were retrospectively analysed. The episodes of angioedema with urticaria were excluded. The admissions were categorized into 2 groups: A - hospitalizations motivated by the angioedema; B - hospitalizations in which the angioedema was an incidental finding., Results: There were 169 hospitalizations (52% females, 96% adults, mean age 52 ± 20.8 years), distributed by 23 hospital departments, 51% in the Immunoallergology department. The mean annual angioedema admission rate was 72/100 000. In 68% of the cases, angioedema was the cause for the admission; in 32% an incidental finding. In 38% there was upper airway involvement. The etiologies were: hereditary angioedema in 24%, angiotensin converting enzyme inhibitor induced angioedema in 31%, idiopathic angioedema in 21%, thrombolysis induced angioedema in 13%, nonsteroidal anti-inflammatory drug-induced angioedema in 5%., Discussion: The main etiology was angiotensin converting enzyme inhibitor angioedema, followed by hereditary angioedema and thrombolysis induced angioedema, and these findings concur with the international literature., Conclusion: The mean annual angioedema admission rate was 72/100 000 and there was airway involvement in 38% of hospitalizations.
- Published
- 2019
- Full Text
- View/download PDF
45. Salmon Roe as an Emerging Allergen in Western Countries.
- Author
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Cosme J, Spínola-Santos A, Bartolomé B, Pastor-Vargas C, Branco-Ferreira M, Pereira-Santos MC, and Pereira-Barbosa M
- Subjects
- Adult, Anaphylaxis, Animals, Egg Hypersensitivity immunology, Humans, Immunoglobulin E immunology, Male, Egg Hypersensitivity diagnosis, Salmon immunology
- Published
- 2019
- Full Text
- View/download PDF
46. Venom Immunotherapy: a 20-year experience with an ultra-rush protocol (210-min).
- Author
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Cosme J, Spínola-Santos A, Pereira-Santos MC, and Pereira-Barbosa M
- Abstract
Summary: Background. Ultra-rush (UR) are induction protocols used in venom immunotherapy (VIT). Objectives: To evaluate the adverse reactions during a 210-minutes UR and determine possible risk factors. Methods: Retrospective study of 129 patients submitted to UR with VIT in the last 20 years. Results: In 114 (88.4%) patients the 101.1 μg maintenance dose was reached in 210 minutes. Systemic reactions (SR) occurred in 22% of patients (71% mild). There were no severe SR, late reactions or fatalities. Adrenaline was administered in 10% of all UR. The SR were more frequent with honey bee VIT and had greater severity in the patients with a previous severe systemic sting reaction. No significant difference in the risk of SR was found with other demographic, clinical or laboratory factors. There were 5% of large local reactions (LLR), these being more frequent in females. Conclusion: Most SR during UR were mild with no need for adrenaline treatment. The honey bee venom and the severity of the anaphylaxis during the field sting were the only SR´s risk factors for systemic adverse reactions during the UR.
- Published
- 2019
- Full Text
- View/download PDF
47. A novel Sigma metric encompasses global multi-site performance of 18 assays on the Abbott Alinity system.
- Author
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Taher J, Cosme J, Renley BA, Daghfal DJ, and Yip PM
- Subjects
- Humans, Immunoassay instrumentation, Immunoassay standards, Blood Chemical Analysis instrumentation, Blood Chemical Analysis standards, Data Accuracy
- Abstract
Objectives: The Abbott Alinity family of chemistry and immunoassay systems recently launched with early adopters contributing imprecision and bias data, which was consolidated to assess the performance of Alinity assays across multiple sites using the Sigma metric. Multi-site Sigma metrics were determined for 3 ion-selective electrodes, 12 photometric assays, and 3 immunoassays across 11 independent laboratory sites in 9 countries., Methods: Total allowable error (TEa) goals followed a previously defined hierarchy that used CLIA as the primary goal. Bias was calculated against the Abbott ARCHITECT system using Passing-Bablok regression analysis using individual site data or pooled aggregate data. Sigma metrics were calculated as (%TEa - |% bias|)/%CV. For individual-site analysis, the Sigma metrics for each assay were compared using the individual-site and the pooled biases. For multi-site analysis, the average CV and the pooled bias were used to generate a Pooled Sigma metric encompassing the global performance for a given assay., Results: A total of 97 individual-site and 18 Pooled Sigma metrics were calculated for available assays. Individual Sigma metrics varied across sites, with 90% of assays performing 4 Sigma or higher, and 17 of 18 Pooled Sigma metrics indicated performance greater than 4 Sigma. Sigma metrics were significantly improved in 16 assays when using pooled bias rather than individual-site bias., Conclusions: This multi-center study applies a novel application of Sigma metrics to the first Alinity users and reveals analytical performance of greater than 4 Sigma for vast majority of assays. Laboratories with limited resources can leverage larger data sets for Pooled Sigma metric analysis, providing a tool to assess the consistency of analytical performance from multiple sites., (Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
48. [Evaluation of the capillary assay of C-reactive protein (CRP) through the lenght of consultation in pediatric emergencies and its economic impact].
- Author
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Roulliaud M, Pereira B, Cosme J, Mourgues C, Sarret C, Sapin V, Caron N, and Bouvier D
- Subjects
- Adolescent, Case-Control Studies, Child, Child, Preschool, Female, Health Care Costs, Humans, Immunochemistry economics, Immunochemistry methods, Infant, Male, Point-of-Care Systems economics, Prospective Studies, Referral and Consultation economics, Solid Phase Extraction economics, Solid Phase Extraction methods, Blood Chemical Analysis economics, Blood Chemical Analysis methods, C-Reactive Protein analysis, Capillaries chemistry, Emergencies economics
- Abstract
Fever is a frequent reason for consultation in pediatric emergency departments and raises the question of biological and radiological examinations. Rapidly obtaining the result of C-reactive protein (CRP) level is essential in front of the steady increase of the number of visits. We carried out a prospective study within the pediatric emergency department of the University Hospital of Clermont-Ferrand from January to April 2017, in order to evaluate the interest of the capillary CRP in point of care (POCT). In two periods, 68 patients (28 controls without and 40 cases with capillary CRP assayed on a Afinion
® AS100) with naked fever greater than 48 hours were included. After a study of the analytical performances of Afinion® and a verification of the homogeneity and the comparability of the two groups on clinical criteria (age, sex, duration of the fever, antibiotics treatment) and biological (values of CRP), the interest of the CRP in POCT was evaluated. In the POCT group, a significant drop in the median of the emergency room consultation time (60 (IQR 33-125) versus 180 (IQR 158-208) minutes), the number of biological acts by patient (1 (IQR 1-3) versus 7 (IQR 3-8)), the global cost of biological and radiological examinations per patient (5.4 (IQR 5.4-32.6) versus 153.8 (IQR 46.9-180.4) euros), and the cost of reagents spent by the laboratory per patient (5.2 (IQR 5.2-6.4) versus 33.2 (IQR 2.3-34.2) euros). Thus, in the context of a clinical-biological partnership, the use of CRP in POCT present a practical and an economic interest.- Published
- 2018
- Full Text
- View/download PDF
49. Multiple shoulder abscesses in a patient with rheumatoid arthritis.
- Author
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Jiménez JV, Martínez-Ayala P, Cosme-Labarthe J, and Carrillo-Pérez DL
- Subjects
- Abscess pathology, Female, Humans, Middle Aged, Tuberculosis, Osteoarticular pathology, Abscess complications, Arthritis, Rheumatoid complications, Shoulder Joint, Tuberculosis, Osteoarticular complications
- Published
- 2018
- Full Text
- View/download PDF
50. Hypoxia-Induced Changes in the Fibroblast Secretome, Exosome, and Whole-Cell Proteome Using Cultured, Cardiac-Derived Cells Isolated from Neonatal Mice.
- Author
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Cosme J, Guo H, Hadipour-Lakmehsari S, Emili A, and Gramolini AO
- Subjects
- Animals, Animals, Newborn, Cells, Cultured, Exosomes metabolism, Fibroblasts pathology, Mice, Myocardium chemistry, Oxygen pharmacology, Proteins analysis, Proteins drug effects, Proteome drug effects, Proteome metabolism, Fibroblasts metabolism, Hypoxia pathology, Myocardium cytology
- Abstract
Cardiac fibroblasts (CFs) represent a major subpopulation of cells in the developing and adult heart. Cardiomyocyte (CM) and CF intercellular communication occurs through paracrine interactions and modulate myocyte development and stress response. Detailed proteomic analysis of the CF secretome in normal and stressed conditions may offer insights into the role of CF in heart development and disease. Primary neonatal mouse CFs were isolated and cultured for 24 h in 21% (normoxic) or 2% (hypoxic) O
2 . Conditioned medium was separated to obtain exosomes (EXO) and EXO-depleted secretome fractions. Multidimensional protein identification technology was performed on secreted fractions. Whole cell lysate data were also generated to provide subcellular context to the secretome. Proteomic analysis identified 6163 unique proteins in total. Statistical (QSpec) analysis identified 494 proteins differentially expressed between fractions and oxygen conditions. Gene Ontology enrichment analysis revealed hypoxic conditions selectively increase expression of proteins with extracellular matrix and signaling annotations. Finally, we subjected CM pretreated with CF secreted factors to hypoxia/reoxygenation. Viability assays suggested altered viability due to CF-derived factors. CF secretome proteomics revealed differential expression based on mode of secretion and oxygen levels in vitro.- Published
- 2017
- Full Text
- View/download PDF
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