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1. Correction to: Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Published
2020
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2. Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Published
2020
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3. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Author

Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Chao, Hsu, Chen, Mengyao, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Hall, Brantley, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Cheatle Jarvela, Alys M., Johnston, J. Spencer, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora Pires, Pick, Leslie, Poelchau, Monica F., Qu, Jiaxin, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Tu, Zhijian Jake, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., and Gundersen-Rindal, Dawn E.

Published
2020
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4. Hemimetabolous genomes reveal molecular basis of termite eusociality

Author

Harrison, Mark C., Jongepier, Evelien, Robertson, Hugh M., Arning, Nicolas, Bitard-Feildel, Tristan, Chao, Hsu, Childers, Christopher P., Dinh, Huyen, Doddapaneni, Harshavardhan, Dugan, Shannon, Gowin, Johannes, Greiner, Carolin, Han, Yi, Hu, Haofu, Hughes, Daniel S. T., Huylmans, Ann-Kathrin, Kemena, Carsten, Kremer, Lukas P. M., Lee, Sandra L., Lopez-Ezquerra, Alberto, Mallet, Ludovic, Monroy-Kuhn, Jose M., Moser, Annabell, Murali, Shwetha C., Muzny, Donna M., Otani, Saria, Piulachs, Maria-Dolors, Poelchau, Monica, Qu, Jiaxin, Schaub, Florentine, Wada-Katsumata, Ayako, Worley, Kim C., Xie, Qiaolin, Ylla, Guillem, Poulsen, Michael, Gibbs, Richard A., Schal, Coby, Richards, Stephen, Belles, Xavier, Korb, Judith, and Bornberg-Bauer, Erich

Published
2018
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5. Gene content evolution in the arthropods

Author

Thomas, Gregg W. C., Dohmen, Elias, Hughes, Daniel S. T., Murali, Shwetha C., Poelchau, Monica, Glastad, Karl, Anstead, Clare A., Ayoub, Nadia A., Batterham, Phillip, Bellair, Michelle, Binford, Greta J., Chao, Hsu, Chen, Yolanda H., Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Duan, Jian J., Dugan, Shannon, Esposito, Lauren A., Friedrich, Markus, Garb, Jessica, Gasser, Robin B., Goodisman, Michael A. D., Gundersen-Rindal, Dawn E., Han, Yi, Handler, Alfred M., Hatakeyama, Masatsugu, Hering, Lars, Hunter, Wayne B., Ioannidis, Panagiotis, Jayaseelan, Joy C., Kalra, Divya, Khila, Abderrahman, Korhonen, Pasi K., Lee, Carol Eunmi, Lee, Sandra L., Li, Yiyuan, Lindsey, Amelia R. I., Mayer, Georg, McGregor, Alistair P., McKenna, Duane D., Misof, Bernhard, Munidasa, Mala, Munoz-Torres, Monica, Muzny, Donna M., Niehuis, Oliver, Osuji-Lacy, Nkechinyere, Palli, Subba R., Panfilio, Kristen A., Pechmann, Matthias, Perry, Trent, Peters, Ralph S., Poynton, Helen C., Prpic, Nikola-Michael, Qu, Jiaxin, Rotenberg, Dorith, Schal, Coby, Schoville, Sean D., Scully, Erin D., Skinner, Evette, Sloan, Daniel B., Stouthamer, Richard, Strand, Michael R., Szucsich, Nikolaus U., Wijeratne, Asela, Young, Neil D., Zattara, Eduardo E., Benoit, Joshua B., Zdobnov, Evgeny M., Pfrender, Michael E., Hackett, Kevin J., Werren, John H., Worley, Kim C., Gibbs, Richard A., Chipman, Ariel D., Waterhouse, Robert M., Bornberg-Bauer, Erich, Hahn, Matthew W., and Richards, Stephen

Published
2020
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6. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Author

Panfilio, Kristen A., Vargas Jentzsch, Iris M., Benoit, Joshua B., Erezyilmaz, Deniz, Suzuki, Yuichiro, Colella, Stefano, Robertson, Hugh M., Poelchau, Monica F., Waterhouse, Robert M., Ioannidis, Panagiotis, Weirauch, Matthew T., Hughes, Daniel S. T., Murali, Shwetha C., Werren, John H., Jacobs, Chris G. C., Duncan, Elizabeth J., Armisén, David, Vreede, Barbara M. I., Baa-Puyoulet, Patrice, Berger, Chloé S., Chang, Chun-che, Chao, Hsu, Chen, Mei-Ju M., Chen, Yen-Ta, Childers, Christopher P., Chipman, Ariel D., Cridge, Andrew G., Crumière, Antonin J. J., Dearden, Peter K., Didion, Elise M., Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dolan, Amanda, Dugan, Shannon, Extavour, Cassandra G., Febvay, Gérard, Friedrich, Markus, Ginzburg, Neta, Han, Yi, Heger, Peter, Holmes, Christopher J., Horn, Thorsten, Hsiao, Yi-min, Jennings, Emily C., Johnston, J. Spencer, Jones, Tamsin E., Jones, Jeffery W., Khila, Abderrahman, Koelzer, Stefan, Kovacova, Viera, Leask, Megan, Lee, Sandra L., Lee, Chien-Yueh, Lovegrove, Mackenzie R., Lu, Hsiao-ling, Lu, Yong, Moore, Patricia J., Munoz-Torres, Monica C., Muzny, Donna M., Palli, Subba R., Parisot, Nicolas, Pick, Leslie, Porter, Megan L., Qu, Jiaxin, Refki, Peter N., Richter, Rose, Rivera-Pomar, Rolando, Rosendale, Andrew J., Roth, Siegfried, Sachs, Lena, Santos, M. Emília, Seibert, Jan, Sghaier, Essia, Shukla, Jayendra N., Stancliffe, Richard J., Tidswell, Olivia, Traverso, Lucila, van der Zee, Maurijn, Viala, Séverine, Worley, Kim C., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Published
2019
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7. Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

Author

Mesquita, Rafael D., Vionette-Amaral, Raquel J., Lowenberger, Carl, Rivera-Pomar, Rolando, Monteiro, Fernando A., Minx, Patrick, Spieth, John, Carvalho, A. Bernardo, Panzera, Francisco, Lawson, Daniel, Torres, André Q., Ribeiro, Jose M. C., Sorgine, Marcos H. F., Waterhouse, Robert M., Montague, Michael J., Abad-Franch, Fernando, Alves-Bezerra, Michele, Amaral, Laurence R., Araujo, Helena M., Araujo, Ricardo N., Aravind, L., Atella, Georgia C., Azambuja, Patricia, Berni, Mateus, Bittencourt-Cunha, Paula R., Braz, Gloria R. C., Calderón-Fernández, Gustavo, Carareto, Claudia M. A., Christensen, Mikkel B., Costa, Igor R., Costa, Samara G., Dansa, Marilvia, Daumas-Filho, Carlos R. O., De-Paula, Iron F., Dias, Felipe A., Dimopoulos, George, Emrich, Scott J., Esponda-Behrens, Natalia, Fampa, Patricia, Fernandez-Medina, Rita D., da Fonseca, Rodrigo N., Fontenele, Marcio, Fronick, Catrina, Fulton, Lucinda A., Gandara, Ana Caroline, Garcia, Eloi S., Genta, Fernando A., Giraldo-Calderón, Gloria I., Gomes, Bruno, Gondim, Katia C., Granzotto, Adriana, Guarneri, Alessandra A., Guigó, Roderic, Harry, Myriam, Hughes, Daniel S. T., Jablonka, Willy, Jacquin-Joly, Emmanuelle, Juárez, M. Patricia, Koerich, Leonardo B., Lange, Angela B., Latorre-Estivalis, José Manuel, Lavore, Andrés, Lawrence, Gena G., Lazoski, Cristiano, Lazzari, Claudio R., Lopes, Raphael R., Lorenzo, Marcelo G., Lugon, Magda D., Majerowicz, David, Marcet, Paula L., Mariotti, Marco, Masuda, Hatisaburo, Megy, Karine, Melo, Ana C. A., Missirlis, Fanis, Mota, Theo, Noriega, Fernando G., Nouzova, Marcela, Nunes, Rodrigo D., Oliveira, Raquel L. L., Oliveira-Silveira, Gilbert, Ons, Sheila, Orchard, Ian, Pagola, Lucia, Paiva-Silva, Gabriela O., Pascual, Agustina, Pavan, Marcio G., Pedrini, Nicolás, Peixoto, Alexandre A., Pereira, Marcos H., Pike, Andrew, Polycarpo, Carla, Prosdocimi, Francisco, Ribeiro-Rodrigues, Rodrigo, Robertson, Hugh M., Salerno, Ana Paula, Salmon, Didier, Santesmasses, Didac, Schama, Renata, Seabra-Junior, Eloy S., Silva-Cardoso, Livia, Silva-Neto, Mario A. C., Souza-Gomes, Matheus, Sterkel, Marcos, Taracena, Mabel L., Tojo, Marta, Tu, Zhijian Jake, Tubio, Jose M. C., Ursic-Bedoya, Raul, Venancio, Thiago M., Walter-Nuno, Ana Beatriz, Wilson, Derek, Warren, Wesley C., Wilson, Richard K., Huebner, Erwin, Dotson, Ellen M., and Oliveira, Pedro L.

Published
2015

8. The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

Author

Armisén, David, Rajakumar, Rajendhran, Friedrich, Markus, Benoit, Joshua B., Robertson, Hugh M., Panfilio, Kristen A., Ahn, Seung-Joon, Poelchau, Monica F., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Gibbs, Richard A., Hughes, Daniel S. T., Han, Yi, Lee, Sandra L., Murali, Shwetha C., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Munoz-Torres, Monica, Abouheif, Ehab, Bonneton, François, Chen, Travis, Chiang, Li-Mei, Childers, Christopher P., Cridge, Andrew G., Crumière, Antonin J. J., Decaras, Amelie, Didion, Elise M., Duncan, Elizabeth J., Elpidina, Elena N., Favé, Marie-Julie, Finet, Cédric, Jacobs, Chris G. C., Cheatle Jarvela, Alys M., Jennings, Emily C., Jones, Jeffery W., Lesoway, Maryna P., Lovegrove, Mackenzie R., Martynov, Alexander, Oppert, Brenda, Lillico-Ouachour, Angelica, Rajakumar, Arjuna, Refki, Peter Nagui, Rosendale, Andrew J., Santos, Maria Emilia, Toubiana, William, van der Zee, Maurijn, Vargas Jentzsch, Iris M., Lowman, Aidamalia Vargas, Viala, Severine, Richards, Stephen, and Khila, Abderrahman

Published
2018
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9. Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum

Author

Lindsey, Amelia R. I., Kelkar, Yogeshwar D., Wu, Xin, Sun, Dan, Martinson, Ellen O., Yan, Zhichao, Rugman-Jones, Paul F., Hughes, Daniel S. T., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harsha Vardhan, Worley, Kim C., Muzny, Donna M., Ye, Gongyin, Gibbs, Richard A., Richards, Stephen, Yi, Soojin V., Stouthamer, Richard, and Werren, John H.

Published
2018
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10. Comparative genomic analysis of sifakas ( Propithecus ) reveals selection for folivory and high heterozygosity despite endangered status

Author

Guevara, Elaine E., primary, Webster, Timothy H., additional, Lawler, Richard R., additional, Bradley, Brenda J., additional, Greene, Lydia K., additional, Ranaivonasy, Jeannin, additional, Ratsirarson, Joelisoa, additional, Harris, R. Alan, additional, Liu, Yue, additional, Murali, Shwetha, additional, Raveendran, Muthuswamy, additional, Hughes, Daniel S. T., additional, Muzny, Donna M., additional, Yoder, Anne D., additional, Worley, Kim C., additional, and Rogers, Jeffrey, additional

Published
2021
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11. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

Author

Dasmahapatra, Kanchon K., Walters, James R., Briscoe, Adriana D., Davey, John W., Whibley, Annabel, Nadeau, Nicola J., Zimin, Aleksey V., Hughes, Daniel S. T., Ferguson, Laura C., Martin, Simon H., Salazar, Camilo, Lewis, James J., Adler, Sebastian, Ahn, Seung-Joon, Baker, Dean A., Baxter, Simon W., Chamberlain, Nicola L., Chauhan, Ritika, Counterman, Brian A., Dalmay, Tamas, Gilbert, Lawrence E., Gordon, Karl, Heckel, David G., Hines, Heather M., Hoff, Katharina J., Holland, Peter W. H., Jacquin-Joly, Emmanuelle, Jiggins, Francis M., Jones, Robert T., Kapan, Durrell D., Kersey, Paul, Lamas, Gerardo, Lawson, Daniel, Mapleson, Daniel, Maroja, Luana S., Martin, Arnaud, Moxon, Simon, Palmer, William J., Papa, Riccardo, Papanicolaou, Alexie, Pauchet, Yannick, Ray, David A., Rosser, Neil, Salzberg, Steven L., Supple, Megan A., Surridge, Alison, Tenger-Trolander, Ayse, Vogel, Heiko, Wilkinson, Paul A., Wilson, Derek, Yorke, James A., Yuan, Furong, Balmuth, Alexi L., Eland, Cathlene, Gharbi, Karim, Thomson, Marian, Gibbs, Richard A., Han, Yi, Jayaseelan, Joy C., Kovar, Christie, Mathew, Tittu, Muzny, Donna M., Ongeri, Fiona, Pu, Ling-Ling, Qu, Jiaxin, Thornton, Rebecca L., Worley, Kim C., Wu, Yuan-Qing, Linares, Mauricio, Blaxter, Mark L., ffrench-Constant, Richard H., Joron, Mathieu, Kronforst, Marcus R., Mullen, Sean P., Reed, Robert D., Scherer, Steven E., Richards, Stephen, Mallet, James, Owen McMillan, W., and Jiggins, Chris D.

Published
2012
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12. Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

Author

Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, and Birney, Ewan

Published
2012
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13. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera

Author

Oeyen, Jan Philip, primary, Baa-Puyoulet, Patrice, additional, Benoit, Joshua B, additional, Beukeboom, Leo W, additional, Bornberg-Bauer, Erich, additional, Buttstedt, Anja, additional, Calevro, Federica, additional, Cash, Elizabeth I, additional, Chao, Hsu, additional, Charles, Hubert, additional, Chen, Mei-Ju May, additional, Childers, Christopher, additional, Cridge, Andrew G, additional, Dearden, Peter, additional, Dinh, Huyen, additional, Doddapaneni, Harsha Vardhan, additional, Dolan, Amanda, additional, Donath, Alexander, additional, Dowling, Daniel, additional, Dugan, Shannon, additional, Duncan, Elizabeth, additional, Elpidina, Elena N, additional, Friedrich, Markus, additional, Geuverink, Elzemiek, additional, Gibson, Joshua D, additional, Grath, Sonja, additional, Grimmelikhuijzen, Cornelis J P, additional, Große-Wilde, Ewald, additional, Gudobba, Cameron, additional, Han, Yi, additional, Hansson, Bill S, additional, Hauser, Frank, additional, Hughes, Daniel S T, additional, Ioannidis, Panagiotis, additional, Jacquin-Joly, Emmanuelle, additional, Jennings, Emily C, additional, Jones, Jeffery W, additional, Klasberg, Steffen, additional, Lee, Sandra L, additional, Lesný, Peter, additional, Lovegrove, Mackenzie, additional, Martin, Sebastian, additional, Martynov, Alexander G, additional, Mayer, Christoph, additional, Montagné, Nicolas, additional, Moris, Victoria C, additional, Munoz-Torres, Monica, additional, Murali, Shwetha Canchi, additional, Muzny, Donna M, additional, Oppert, Brenda, additional, Parisot, Nicolas, additional, Pauli, Thomas, additional, Peters, Ralph S, additional, Petersen, Malte, additional, Pick, Christian, additional, Persyn, Emma, additional, Podsiadlowski, Lars, additional, Poelchau, Monica F, additional, Provataris, Panagiotis, additional, Qu, Jiaxin, additional, Reijnders, Maarten J M F, additional, von Reumont, Björn Marcus, additional, Rosendale, Andrew J, additional, Simao, Felipe A, additional, Skelly, John, additional, Sotiropoulos, Alexandros G, additional, Stahl, Aaron L, additional, Sumitani, Megumi, additional, Szuter, Elise M, additional, Tidswell, Olivia, additional, Tsitlakidis, Evangelos, additional, Vedder, Lucia, additional, Waterhouse, Robert M, additional, Werren, John H, additional, Wilbrandt, Jeanne, additional, Worley, Kim C, additional, Yamamoto, Daisuke S, additional, van de Zande, Louis, additional, Zdobnov, Evgeny M, additional, Ziesmann, Tanja, additional, Gibbs, Richard A, additional, Richards, Stephen, additional, Hatakeyama, Masatsugu, additional, Misof, Bernhard, additional, and Niehuis, Oliver, additional

Published
2020
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14. Additional file 4 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 4. Chemosensory receptor sequences.

Published
2020
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15. Additional file 7 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 7. Complete ATP-binding cassette transporter (ABC) and carboxylesterase sequences.

Published
2020
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16. Additional file 1 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 1. Supplementary notes, figures and small tables.

Published
2020
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17. Additional file 6 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Subjects
enzymes and coenzymes (carbohydrates), organic chemicals, heterocyclic compounds, respiratory system, urologic and male genital diseases
Abstract

Additional file 6. Complete and partial cytochrome p450 (CYP) sequences.

Published
2020
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18. Additional file 5 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 5. Neuropeptide and protein hormone peptide sequences with highlighted features.

Published
2020
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19. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Author

Biochemistry, Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Chao, Hsu, Chen, Mengyao, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha V., Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Hall, Brantley, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Cheatle Jarvela, Alys M., Johnston, J. Spencer, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora P., Pick, Leslie, Poelchau, Monica F., Qu, Jiaxin, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Tu, Zhijian Jake, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., Gundersen-Rindal, Dawn E., Biochemistry, Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Chao, Hsu, Chen, Mengyao, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha V., Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Hall, Brantley, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Cheatle Jarvela, Alys M., Johnston, J. Spencer, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora P., Pick, Leslie, Poelchau, Monica F., Qu, Jiaxin, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Tu, Zhijian Jake, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., and Gundersen-Rindal, Dawn E.

Abstract

Background Halyomorpha halys (Stål), the brown marmorated stink bug, is a highly invasive insect species due in part to its exceptionally high levels of polyphagy. This species is also a nuisance due to overwintering in human-made structures. It has caused significant agricultural losses in recent years along the Atlantic seaboard of North America and in continental Europe. Genomic resources will assist with determining the molecular basis for this species’ feeding and habitat traits, defining potential targets for pest management strategies. Results Analysis of the 1.15-Gb draft genome assembly has identified a wide variety of genetic elements underpinning the biological characteristics of this formidable pest species, encompassing the roles of sensory functions, digestion, immunity, detoxification and development, all of which likely support H. halys’ capacity for invasiveness. Many of the genes identified herein have potential for biomolecular pesticide applications. Conclusions Availability of the H. halys genome sequence will be useful for the development of environmentally friendly biomolecular pesticides to be applied in concert with more traditional, synthetic chemical-based controls.

Published
2020

20. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera

Author

Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B., Beukeboom, Leo W., Bornberg-Bauer, Erich, Buttstedt, Anja, Calevro, Federica, Cash, Elizabeth I., Chao, Hsu, Charles, Hubert, Chen, Mei-Ju May, Childers, Christopher, Cridge, Andrew G., Dearden, Peter, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dolan, Amanda, Donath, Alexander, Dowling, Daniel, Dugan, Shannon, Duncan, Elizabeth, Elpidina, Elena N., Friedrich, Markus, Geuverink, Elzemiek, Gibson, Joshua D., Grath, Sonja, Grimmelikhuijzen, Cornelis J. P., Große-Wilde, Ewald, Gudobba, Cameron, Han, Yi, Hansson, Bill S., Hauser, Frank, Hughes, Daniel S. T., Ioannidis, Panagiotis, Jacquin-Joly, Emmanuelle, Jennings, Emily C., Jones, Jeffery W., Klasberg, Steffen, Lee, Sandra L., Lesný, Peter, Lovegrove, Mackenzie, Martin, Sebastian, Martynov, Alexander G., Mayer, Christoph, Montagné, Nicolas, Moris, Victoria C., Munoz-Torres, Monica, Murali, Shwetha Canchi, Muzny, Donna M., Oppert, Brenda, Parisot, Nicolas, Pauli, Thomas, Peters, Ralph S., Petersen, Malte, Pick, Christian, Persyn, Emma, Podsiadlowski, Lars, Poelchau, Monica F., Provataris, Panagiotis, Qu, Jiaxin, Reijnders, Maarten J. M. F., Marcus von Reumont, Björn, Rosendale, Andrew J., Simao, Felipe A., Skelly, John, Sotiropoulos, Alexandros G., Stahl, Aaron L., Sumitani, Megumi, Szuter, Elise M., Tidswell, Olivia, Tsitlakidis, Evangelos, Vedder, Lucia, Waterhouse, Robert M., Werren, John H., Wilbrandt, Jeanne, Worley, Kim C., Yamamoto, Daisuke S., van de Zande, Louis, Zdobnov, Evgeny M., Ziesmann, Tanja, Gibbs, Richard A., Richards, Stephen, Hatakeyama, Masatsugu, Misof, Bernhard, Niehuis, Oliver, Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B., Beukeboom, Leo W., Bornberg-Bauer, Erich, Buttstedt, Anja, Calevro, Federica, Cash, Elizabeth I., Chao, Hsu, Charles, Hubert, Chen, Mei-Ju May, Childers, Christopher, Cridge, Andrew G., Dearden, Peter, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dolan, Amanda, Donath, Alexander, Dowling, Daniel, Dugan, Shannon, Duncan, Elizabeth, Elpidina, Elena N., Friedrich, Markus, Geuverink, Elzemiek, Gibson, Joshua D., Grath, Sonja, Grimmelikhuijzen, Cornelis J. P., Große-Wilde, Ewald, Gudobba, Cameron, Han, Yi, Hansson, Bill S., Hauser, Frank, Hughes, Daniel S. T., Ioannidis, Panagiotis, Jacquin-Joly, Emmanuelle, Jennings, Emily C., Jones, Jeffery W., Klasberg, Steffen, Lee, Sandra L., Lesný, Peter, Lovegrove, Mackenzie, Martin, Sebastian, Martynov, Alexander G., Mayer, Christoph, Montagné, Nicolas, Moris, Victoria C., Munoz-Torres, Monica, Murali, Shwetha Canchi, Muzny, Donna M., Oppert, Brenda, Parisot, Nicolas, Pauli, Thomas, Peters, Ralph S., Petersen, Malte, Pick, Christian, Persyn, Emma, Podsiadlowski, Lars, Poelchau, Monica F., Provataris, Panagiotis, Qu, Jiaxin, Reijnders, Maarten J. M. F., Marcus von Reumont, Björn, Rosendale, Andrew J., Simao, Felipe A., Skelly, John, Sotiropoulos, Alexandros G., Stahl, Aaron L., Sumitani, Megumi, Szuter, Elise M., Tidswell, Olivia, Tsitlakidis, Evangelos, Vedder, Lucia, Waterhouse, Robert M., Werren, John H., Wilbrandt, Jeanne, Worley, Kim C., Yamamoto, Daisuke S., van de Zande, Louis, Zdobnov, Evgeny M., Ziesmann, Tanja, Gibbs, Richard A., Richards, Stephen, Hatakeyama, Masatsugu, Misof, Bernhard, and Niehuis, Oliver

Abstract

The tremendous diversity of Hymenoptera is commonly attributed to the evolution of parasitoidism in the last common ancestor of parasitoid sawflies (Orussidae) and wasp-waisted Hymenoptera (Apocrita). However, Apocrita and Orussidae differ dramatically in their species richness, indicating that the diversification of Apocrita was promoted by additional traits. These traits have remained elusive due to a paucity of sawfly genome sequences, in particular those of parasitoid sawflies. Here we present comparative analyses of draft genomes of the primarily phytophagous sawfly Athalia rosae and the parasitoid sawfly Orussus abietinus. Our analyses revealed that the ancestral hymenopteran genome exhibited traits that were previously considered unique to eusocial Apocrita (e.g., low transposable element content and activity) and a wider gene repertoire than previously thought (e.g., genes for CO2 detection). Moreover, we discovered that Apocrita evolved a significantly larger array of odorant receptors than sawflies, which could be relevant to the remarkable diversification of Apocrita by enabling efficient detection and reliable identification of hosts.

Published
2020

21. The Toxicogenome ofHyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology

Author

Poynton, Helen C., primary, Hasenbein, Simone, additional, Benoit, Joshua B., additional, Sepulveda, Maria S., additional, Poelchau, Monica F., additional, Hughes, Daniel S. T., additional, Murali, Shwetha C., additional, Chen, Shuai, additional, Glastad, Karl M., additional, Goodisman, Michael A. D., additional, Werren, John H., additional, Vineis, Joseph H., additional, Bowen, Jennifer L., additional, Friedrich, Markus, additional, Jones, Jeffery, additional, Robertson, Hugh M., additional, Feyereisen, René, additional, Mechler-Hickson, Alexandra, additional, Mathers, Nicholas, additional, Lee, Carol Eunmi, additional, Colbourne, John K., additional, Biales, Adam, additional, Johnston, J. Spencer, additional, Wellborn, Gary A., additional, Rosendale, Andrew J., additional, Cridge, Andrew G., additional, Munoz-Torres, Monica C., additional, Bain, Peter A., additional, Manny, Austin R., additional, Major, Kaley M., additional, Lambert, Faith N., additional, Vulpe, Chris D., additional, Tuck, Padrig, additional, Blalock, Bonnie J., additional, Lin, Yu-Yu, additional, Smith, Mark E., additional, Ochoa-Acuña, Hugo, additional, Chen, Mei-Ju May, additional, Childers, Christopher P., additional, Qu, Jiaxin, additional, Dugan, Shannon, additional, Lee, Sandra L., additional, Chao, Hsu, additional, Dinh, Huyen, additional, Han, Yi, additional, Doddapaneni, HarshaVardhan, additional, Worley, Kim C., additional, Muzny, Donna M., additional, Gibbs, Richard A., additional, and Richards, Stephen, additional

Published
2018
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22. The toxicogenome of Hyalella azteca:a model for sediment ecotoxicology and evolutionary toxicology

Author

Poynton, Helen C., Hasenbein, Simone, Benoit, Joshua B., Sepulveda, Maria S., Poelchau, Monica F., Hughes, Daniel S. T., Murali, Shwetha C., Chen, Shuai, Glastad, Karl M., Goodisman, Michael A. D., Werren, John H., Vineis, Joseph H., Bowen, Jennifer L., Friedrich, Markus, Jones, Jeffery, Robertson, Hugh M., Feyereisen, Rene, Mechler-Hickson, Alexandra, Mathers, Nicholas, Lee, Carol Eunmi, Colbourne, John K., Biales, Adam, Johnston, J. Spencer, Wellborn, Gary A., Rosendale, Andrew J., Cridge, Andrew G., Munoz-Torres, Monica C., Bain, Peter A., Manny, Austin R., Major, Kaley M., Lambert, Faith N., Vulpe, Chris D., Tuck, Padrig, Blalock, Bonnie J., Lin, Yu-Yu, Smith, Mark E., Ochoa-Acuna, Hugo, Chen, Mei-Ju May, Childers, Christopher P., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Huyen Dinh, Han, Yi, Doddapanen, HarshaVardhan, Worley, Kim C., Muzny, Donna M., Gibbs, Richard A., Richards, Stephen, Poynton, Helen C., Hasenbein, Simone, Benoit, Joshua B., Sepulveda, Maria S., Poelchau, Monica F., Hughes, Daniel S. T., Murali, Shwetha C., Chen, Shuai, Glastad, Karl M., Goodisman, Michael A. D., Werren, John H., Vineis, Joseph H., Bowen, Jennifer L., Friedrich, Markus, Jones, Jeffery, Robertson, Hugh M., Feyereisen, Rene, Mechler-Hickson, Alexandra, Mathers, Nicholas, Lee, Carol Eunmi, Colbourne, John K., Biales, Adam, Johnston, J. Spencer, Wellborn, Gary A., Rosendale, Andrew J., Cridge, Andrew G., Munoz-Torres, Monica C., Bain, Peter A., Manny, Austin R., Major, Kaley M., Lambert, Faith N., Vulpe, Chris D., Tuck, Padrig, Blalock, Bonnie J., Lin, Yu-Yu, Smith, Mark E., Ochoa-Acuna, Hugo, Chen, Mei-Ju May, Childers, Christopher P., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Huyen Dinh, Han, Yi, Doddapanen, HarshaVardhan, Worley, Kim C., Muzny, Donna M., Gibbs, Richard A., and Richards, Stephen

Published
2018

23. Erratum to :'Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection' (vol 112, pg 14936, 2015)

Author

Lowenberger, Carl, Rivera Pomar, Rolando, Monteiro, Fernando A., Minx, Patrick, Spieth, John, Bernardo Carvalho, A., Panzera, Francisco, Lawson, Daniel, Torres, Andre Q., Ribeiro, Jose M. C., Sorgine, Marcos H. F., Waterhouse, Robert M., Montague, Michael J., Abad Franch, Fernando, Alves Bezerra, Michele, Amaral, Laurence R., Araujo, Helena M., Araujo, Ricardo N., Aravind, L., Atella, Georgia C., Azambuja, Patricia, Berni, Mateus, Bittencourt Cunha, Paula R., Braz, Gloria R. C., Calderon Fernandez, Gustavo, Carareto, Claudia M. A., Christensen, Mikkel B., Costa, Igor R., Costa, Samara G., Dansa, Marilvia, Daumas Filho, Carlos R. O., De Paula, Iron F., Dias, Felipe A., Dimopoulos, George, Emrich, Scott J., Esponda Behrens, Natalia, Fampa, Patricia, Fernandez Medina, Rita D., da Fonseca, Rodrigo N., Fontenele, Marcio, Fronick, Catrina, Fulton, Lucinda A., Gandara, Ana Caroline, Garcia, Eloi S., Genta, Fernando A., Giraldo Calderón, Gloria I., Gomes, Bruno, Gondim, Katia C., Granzotto, Adriana, Guarneri, Alessandra A., Guigó, Roderic, Harry, Myriam, Hughes, Daniel S. T., Jablonka, Willy, Jacquin Joly, Emmanuelle, Patricia Juarez, M., Koerich, Leonardo B., Latorre Estivalis, Jose Manuel, Lavore, Andrés, Lawrence, Gena G., Lazoski, Cristiano, Lazzari, Claudio R., Lopes, Raphael R., Lorenzo, Marcelo G., Lugon, Magda D., Majerowicz, David, Marcet, Paula L., Mariotti, Marco, Masuda, Hatisaburo, Megy, Karine, Melo, Ana C.A., Missirlis, Fanis, Mota, Theo, Noriega, Fernando G., Nouzova, Marcela, Nunes, Rodrigo D., Oliveira, Raquel L.L., Oliveira Silveira, Gilbert, Ons, Sheila, Pagola, Lucia, Paiva Silva, Gabriela O., Pascual, Agustina, Pavan, Marcio G., Pedrini, Nicolas, Peixoto, Alexandre A., Pereira, Marcos H., Pike, Andrew, Polycarpo, Carla, Prosdocimi, Francisco, Ribeiro Rodrigues, Rodrigo, Robertson, Hugh M., Salerno, Ana Paula, Salmon, Didier, Santesmasses, Didac, Schama, Renata, Seabra Junior, Eloy S., Silva Cardoso, Livia, Mesquita, Rafael D., and Vionette Amaral, Raquel J.

Subjects
rhodnius prolixus, Rhodnius prolixus, genome, hematophagy, immunity, Chagas disease, maladie de chagas
Abstract

Rhodnius prolixus not only has served as a model organism for the study of insect physiology, but also is a major vector of Chagas disease, an illness that affects approximately seven million people worldwide. We sequenced the genome of R. prolixus, generated assembled sequences covering 95% of the genome (similar to 702 Mb), including 15,456 putative protein-coding genes, and completed comprehensive genomic analyses of this obligate blood-feeding insect. Although immune-deficiency (IMD)-mediated immune responses were observed, R. prolixus putatively lacks key components of the IMD pathway, suggesting a reorganization of the canonical immune signaling network. Although both Toll and IMD effectors controlled intestinal microbiota, neither affected Trypanosoma cruzi, the causal agent of Chagas disease, implying the existence of evasion or tolerance mechanisms. R. prolixus has experienced an extensive loss of selenoprotein genes, with its repertoire reduced to only two proteins, one of which is a selenocysteine-based glutathione peroxidase, the first found in insects. The genome contained actively transcribed, horizontally transferred genes from Wolbachia sp., which showed evidence of codon use evolution toward the insect use pattern. Comparative protein analyses revealed many lineage-specific expansions and putative gene absences in R. prolixus, including tandem expansions of genes related to chemoreception, feeding, and digestion that possibly contributed to the evolution of a blood-feeding lifestyle. The genome assembly and these associated analyses provide critical information on the physiology and evolution of this important vector species and should be instrumental for the development of innovative disease control methods.

Published
2016

24. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

Author

Schwager, Evelyn E., primary, Sharma, Prashant P., additional, Clarke, Thomas, additional, Leite, Daniel J., additional, Wierschin, Torsten, additional, Pechmann, Matthias, additional, Akiyama-Oda, Yasuko, additional, Esposito, Lauren, additional, Bechsgaard, Jesper, additional, Bilde, Trine, additional, Buffry, Alexandra D., additional, Chao, Hsu, additional, Dinh, Huyen, additional, Doddapaneni, HarshaVardhan, additional, Dugan, Shannon, additional, Eibner, Cornelius, additional, Extavour, Cassandra G., additional, Funch, Peter, additional, Garb, Jessica, additional, Gonzalez, Luis B., additional, Gonzalez, Vanessa L., additional, Griffiths-Jones, Sam, additional, Han, Yi, additional, Hayashi, Cheryl, additional, Hilbrant, Maarten, additional, Hughes, Daniel S. T., additional, Janssen, Ralf, additional, Lee, Sandra L., additional, Maeso, Ignacio, additional, Murali, Shwetha C., additional, Muzny, Donna M., additional, Nunes da Fonseca, Rodrigo, additional, Paese, Christian L. B., additional, Qu, Jiaxin, additional, Ronshaugen, Matthew, additional, Schomburg, Christoph, additional, Schönauer, Anna, additional, Stollewerk, Angelika, additional, Torres-Oliva, Montserrat, additional, Turetzek, Natascha, additional, Vanthournout, Bram, additional, Werren, John H., additional, Wolff, Carsten, additional, Worley, Kim C., additional, Bucher, Gregor, additional, Gibbs, Richard A., additional, Coddington, Jonathan, additional, Oda, Hiroki, additional, Stanke, Mario, additional, Ayoub, Nadia A., additional, Prpic, Nikola-Michael, additional, Flot, Jean-François, additional, Posnien, Nico, additional, Richards, Stephen, additional, and McGregor, Alistair P., additional

Published
2017
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25. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

Author

Schwager, Evelyn E., Sharma, Prashant P., Clarke, Thomas, Leite, Daniel J., Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D., Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G., Funch, Peter, Garb, Jessica, Gonzalez, Luis B., Gonzalez, Vanessa L., Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten, Hughes, Daniel S. T., Janssen, Ralf, Lee, Sandra L., Maeso, Ignacio, Murali, Shwetha C., Muzny, Donna M., da Fonseca, Rodrigo Nunes, Paese, Christian L. B., Qu, Jiaxin, Ronshaugen, Matthew, Schomburg, Christoph, Schönauer, Anna, Stollewerk, Angelika, Torres-Oliva, Montserrat, Turetzek, Natascha, Vanthournout, Bram, Werren, John H., Wolff, Carsten, Worley, Kim C., Bucher, Gregor, Gibbs, Richard A., Coddington, Jonathan, Oda, Hiroki, Stanke, Mario, Ayoub, Nadia A., Prpic, Nikola-Michael, Flot, Jean-Francois, Posnien, Nico, Richards, Stephen, McGregor, Alistair P., Schwager, Evelyn E., Sharma, Prashant P., Clarke, Thomas, Leite, Daniel J., Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D., Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G., Funch, Peter, Garb, Jessica, Gonzalez, Luis B., Gonzalez, Vanessa L., Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten, Hughes, Daniel S. T., Janssen, Ralf, Lee, Sandra L., Maeso, Ignacio, Murali, Shwetha C., Muzny, Donna M., da Fonseca, Rodrigo Nunes, Paese, Christian L. B., Qu, Jiaxin, Ronshaugen, Matthew, Schomburg, Christoph, Schönauer, Anna, Stollewerk, Angelika, Torres-Oliva, Montserrat, Turetzek, Natascha, Vanthournout, Bram, Werren, John H., Wolff, Carsten, Worley, Kim C., Bucher, Gregor, Gibbs, Richard A., Coddington, Jonathan, Oda, Hiroki, Stanke, Mario, Ayoub, Nadia A., Prpic, Nikola-Michael, Flot, Jean-Francois, Posnien, Nico, Richards, Stephen, and McGregor, Alistair P.

Abstract

Background: The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication of genes in some chelicerate lineages including two rounds of whole genome duplication (WGD) in horseshoe crabs. To investigate this further, we sequenced and analyzed the genome of the common house spider Parasteatoda tepidariorum. Results: We found pervasive duplication of both coding and non-coding genes in this spider, including two clusters of Hox genes. Analysis of synteny conservation across the P. tepidariorum genome suggests that there has been an ancient WGD in spiders. Comparison with the genomes of other chelicerates, including that of the newly sequenced bark scorpion Centruroides sculpturatus, suggests that this event occurred in the common ancestor of spiders and scorpions, and is probably independent of the WGDs in horseshoe crabs. Furthermore, characterization of the sequence and expression of the Hox paralogs in P. tepidariorum suggests that many have been subject to neo-functionalization and/or sub-functionalization since their duplication. Conclusions: Our results reveal that spiders and scorpions are likely the descendants of a polyploid ancestor that lived more than 450 MYA. Given the extensive morphological diversity and ecological adaptations found among these animals, rivaling those of vertebrates, our study of the ancient WGD event in Arachnopulmonata provides a new comparative platform to explore common and divergent evolutionary outcomes of polyploidization events across eukaryotes.

Published
2017
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26. Prototypical Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

Author

Chipman, Ariel D., Ferrier, David E. K., Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S. T., Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C., Alonso, Claudio R., Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C. J., Blankenburg, Kerstin P., Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K., Pasquier, Louis Du, Duncan, Elisabeth J., Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D., Extavour, Cassandra G., Francisco, Liezl, Gabaldón, Toni, Gillis, William J., Goodwin-Horn, Elisabeth A., Green, Jack E., Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J. P., Gubbala, Sal, Guigó Serra, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Rozas Liras, Julio A., and Universitat de Barcelona

Subjects
Insectes, Insects, Genòmica, Arthropoda, Genètica animal, Drosòfila, Artròpodes, Drosophila, Genètica evolutiva, Genomics, Animal genetics, Evolutionary genetics
Abstract

Myriapods (e.g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific life history.

Published
2014

27. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Author

Papanicolaou, Alexie, primary, Schetelig, Marc F., additional, Arensburger, Peter, additional, Atkinson, Peter W., additional, Benoit, Joshua B., additional, Bourtzis, Kostas, additional, Castañera, Pedro, additional, Cavanaugh, John P., additional, Chao, Hsu, additional, Childers, Christopher, additional, Curril, Ingrid, additional, Dinh, Huyen, additional, Doddapaneni, HarshaVardhan, additional, Dolan, Amanda, additional, Dugan, Shannon, additional, Friedrich, Markus, additional, Gasperi, Giuliano, additional, Geib, Scott, additional, Georgakilas, Georgios, additional, Gibbs, Richard A., additional, Giers, Sarah D., additional, Gomulski, Ludvik M., additional, González-Guzmán, Miguel, additional, Guillem-Amat, Ana, additional, Han, Yi, additional, Hatzigeorgiou, Artemis G., additional, Hernández-Crespo, Pedro, additional, Hughes, Daniel S. T., additional, Jones, Jeffery W., additional, Karagkouni, Dimitra, additional, Koskinioti, Panagiota, additional, Lee, Sandra L., additional, Malacrida, Anna R., additional, Manni, Mosè, additional, Mathiopoulos, Kostas, additional, Meccariello, Angela, additional, Munoz-Torres, Monica, additional, Murali, Shwetha C., additional, Murphy, Terence D., additional, Muzny, Donna M., additional, Oberhofer, Georg, additional, Ortego, Félix, additional, Paraskevopoulou, Maria D., additional, Poelchau, Monica, additional, Qu, Jiaxin, additional, Reczko, Martin, additional, Robertson, Hugh M., additional, Rosendale, Andrew J., additional, Rosselot, Andrew E., additional, Saccone, Giuseppe, additional, Salvemini, Marco, additional, Savini, Grazia, additional, Schreiner, Patrick, additional, Scolari, Francesca, additional, Siciliano, Paolo, additional, Sim, Sheina B., additional, Tsiamis, George, additional, Ureña, Enric, additional, S.Vlachos, Ioannis, additional, Werren, John H., additional, Wimmer, Ernst A., additional, Worley, Kim C., additional, Zacharopoulou, Antigone, additional, Richards, Stephen, additional, and Handler, Alfred M., additional

Published
2017
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28. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

Author

Benoit, Joshua B., Adelman, Zach N., Reinhardt, Klaus, Dolan, Amanda, Poelchau, Monica, Jennings, Emily C., Szuter, Elise M., Hagan, Richard W., Gujar, Hemant, Shukla, Jayendra Nath, Zhu, Fang, Mohan, M., Nelson, David R., Rosendale, Andrew J., Derst, Christian, Resnik, Valentina, Wernig, Sebastian, Menegazzi, Pamela, Wegener, Christian, Peschel, Nicolai, Hendershot, Jacob M., Blenau, Wolfgang, Predel, Reinhard, Johnston, Paul R., Ioannidis, Panagiotis, Waterhouse, Robert M., Nauen, Ralf, Schorn, Corinna, Ott, Mark-Christoph, Maiwald, Frank, Johnston, J. Spencer, Gondhalekar, Ameya D., Scharf, Michael E., Peterson, Brittany F., Raje, Kapil R., Hottel, Benjamin A., Armisen, David, Crumiere, Antonin Jean Johan, Refki, Peter Nagui, Santos, Maria Emilia, Sghaier, Essia, Viala, Severine, Khila, Abderrahman, Ahn, Seung-Joon, Childers, Christopher, Lee, Chien-Yueh, Lin, Han, Hughes, Daniel S. T., Duncan, Elizabeth J., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harshavardhan, Worley, Kim C., Muzny, Donna M., Wheeler, David, Panfilio, Kristen A., Jentzsch, Iris M. Vargas, Vargo, Edward L., Booth, Warren, Friedrich, Markus, Weirauch, Matthew T., Anderson, Michelle A. E., Jones, Jeffery W., Mittapalli, Omprakash, Zhao, Chaoyang, Zhou, Jing-Jiang, Evans, Jay D., Attardo, Geoffrey M., Robertson, Hugh M., Zdobnov, Evgeny M., Ribeiro, Jose M. C., Gibbs, Richard A., Werren, John H., Palli, Subba R., Schal, Coby, Richards, Stephen, Benoit, Joshua B., Adelman, Zach N., Reinhardt, Klaus, Dolan, Amanda, Poelchau, Monica, Jennings, Emily C., Szuter, Elise M., Hagan, Richard W., Gujar, Hemant, Shukla, Jayendra Nath, Zhu, Fang, Mohan, M., Nelson, David R., Rosendale, Andrew J., Derst, Christian, Resnik, Valentina, Wernig, Sebastian, Menegazzi, Pamela, Wegener, Christian, Peschel, Nicolai, Hendershot, Jacob M., Blenau, Wolfgang, Predel, Reinhard, Johnston, Paul R., Ioannidis, Panagiotis, Waterhouse, Robert M., Nauen, Ralf, Schorn, Corinna, Ott, Mark-Christoph, Maiwald, Frank, Johnston, J. Spencer, Gondhalekar, Ameya D., Scharf, Michael E., Peterson, Brittany F., Raje, Kapil R., Hottel, Benjamin A., Armisen, David, Crumiere, Antonin Jean Johan, Refki, Peter Nagui, Santos, Maria Emilia, Sghaier, Essia, Viala, Severine, Khila, Abderrahman, Ahn, Seung-Joon, Childers, Christopher, Lee, Chien-Yueh, Lin, Han, Hughes, Daniel S. T., Duncan, Elizabeth J., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harshavardhan, Worley, Kim C., Muzny, Donna M., Wheeler, David, Panfilio, Kristen A., Jentzsch, Iris M. Vargas, Vargo, Edward L., Booth, Warren, Friedrich, Markus, Weirauch, Matthew T., Anderson, Michelle A. E., Jones, Jeffery W., Mittapalli, Omprakash, Zhao, Chaoyang, Zhou, Jing-Jiang, Evans, Jay D., Attardo, Geoffrey M., Robertson, Hugh M., Zdobnov, Evgeny M., Ribeiro, Jose M. C., Gibbs, Richard A., Werren, John H., Palli, Subba R., Schal, Coby, and Richards, Stephen

Abstract

The bed bug, Cimex lectularius, has re-established itself as a ubiquitous human ectoparasite throughout much of the world during the past two decades. This global resurgence is likely linked to increased international travel and commerce in addition to widespread insecticide resistance. Analyses of the C. lectularius sequenced genome (650Mb) and 14,220 predicted protein-coding genes provide a comprehensive representation of genes that are linked to traumatic insemination, a reduced chemosensory repertoire of genes related to obligate hematophagy, host-symbiont interactions, and several mechanisms of insecticide resistance. In addition, we document the presence of multiple putative lateral gene transfer events. Genome sequencing and annotation establish a solid foundation for future research on mechanisms of insecticide resistance, human-bed bug and symbiont-bed bug associations, and unique features of bed bug biology that contribute to the unprecedented success of C. lectularius as a human ectoparasite.

Published
2016

29. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface

Author

McKenna, Duane D., Scully, Erin D., Pauchet, Yannick, Hoover, Kelli, Kirsch, Roy, Geib, Scott M., Mitchell, Robert F., Waterhouse, Robert M., Ahn, Seung-Joon, Arsala, Deanna, Benoit, Joshua B., Blackmon, Heath, Bledsoe, Tiffany, Bowsher, Julia H., Busch, Andre, Calla, Bernarda, Chao, Hsu, Childers, Anna K., Childers, Christopher, Clarke, Dave J., Cohen, Lorna, Demuth, Jeffery P., Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Duan, Jian J., Dugan, Shannon, Friedrich, Markus, Glastad, Karl M., Goodisman, Michael A. D., Haddad, Stephanie, Han, Yi, Hughes, Daniel S. T., Ioannidis, Panagiotis, Johnston, J. Spencer, Jones, Jeffery W., Kuhn, Leslie A., Lance, David R., Lee, Chien-Yueh, Lee, Sandra L., Lin, Han, Lynch, Jeremy A., Moczek, Armin P., Murali, Shwetha C., Muzny, Donna M., Nelson, David R., Palli, Subba R., Panfilio, Kristen A., Pers, Dan, Poelchau, Monica F., Quan, Honghu, Qu, Jiaxin, Ray, Ann M., Rinehart, Joseph P., Robertson, Hugh M., Roehrdanz, Richard, Rosendale, Andrew J., Shin, Seunggwan, Silva, Christian, Torson, Alex S., Jentzsch, Iris M. Vargas, Werren, John H., Worley, Kim C., Yocum, George, Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen, McKenna, Duane D., Scully, Erin D., Pauchet, Yannick, Hoover, Kelli, Kirsch, Roy, Geib, Scott M., Mitchell, Robert F., Waterhouse, Robert M., Ahn, Seung-Joon, Arsala, Deanna, Benoit, Joshua B., Blackmon, Heath, Bledsoe, Tiffany, Bowsher, Julia H., Busch, Andre, Calla, Bernarda, Chao, Hsu, Childers, Anna K., Childers, Christopher, Clarke, Dave J., Cohen, Lorna, Demuth, Jeffery P., Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Duan, Jian J., Dugan, Shannon, Friedrich, Markus, Glastad, Karl M., Goodisman, Michael A. D., Haddad, Stephanie, Han, Yi, Hughes, Daniel S. T., Ioannidis, Panagiotis, Johnston, J. Spencer, Jones, Jeffery W., Kuhn, Leslie A., Lance, David R., Lee, Chien-Yueh, Lee, Sandra L., Lin, Han, Lynch, Jeremy A., Moczek, Armin P., Murali, Shwetha C., Muzny, Donna M., Nelson, David R., Palli, Subba R., Panfilio, Kristen A., Pers, Dan, Poelchau, Monica F., Quan, Honghu, Qu, Jiaxin, Ray, Ann M., Rinehart, Joseph P., Robertson, Hugh M., Roehrdanz, Richard, Rosendale, Andrew J., Shin, Seunggwan, Silva, Christian, Torson, Alex S., Jentzsch, Iris M. Vargas, Werren, John H., Worley, Kim C., Yocum, George, Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Background: Relatively little is known about the genomic basis and evolution of wood- feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle. Results: The Asian longhorned beetle genome encodes a uniquely diverse arsenal of enzymes that can degrade the main polysaccharide networks in plant cell walls, detoxify plant allelochemicals, and otherwise facilitate feeding on woody plants. It has the metabolic plasticity needed to feed on diverse plant species, contributing to its highly invasive nature. Large expansions of chemosensory genes involved in the reception of pheromones and plant kairomones are consistent with the complexity of chemical cues it uses to find host plants and mates. Conclusions: Amplification and functional divergence of genes associated with specialized feeding on plants, including genes originally obtained via horizontal gene transfer from fungi and bacteria, contributed to the addition, expansion, and enhancement of the metabolic repertoire of the Asian longhorned beetle, certain other phytophagous beetles, and to a lesser degree, other phytophagous insects. Our results thus begin to establish a genomic basis for the evolutionary success of beetles on plants.

Published
2016

30. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

Author

Entomology, Benoit, Joshua B., Adelman, Zach N., Reinhardt, Klaus, Dolan, Amanda M., Poelchau, Monica, Jennings, Emily C., Szuter, Elise M., Hagan, Richard W., Gujar, Hemant, Shukla, Jayendra Nath, Zhu, Fang, Mohan, M., Nelson, David R., Rosendale, Andrew J., Derst, Christian, Resnik, Valentina, Wernig, Sebastian, Menegazzi, Pamela, Wegener, Christian, Peschel, Nicolai, Hendershot, Jacob M., Blenau, Wolfgang, Predel, Reinhard, Johnston, Paul R., Ioannidis, Panagiotis, Waterhouse, Robert M., Nauen, Ralf, Schorn, Corinna, Ott, Mark-Christoph, Maiwald, Frank, Johnston, J. Spencer, Gondhalekar, Ameya D., Scharf, Michael E., Peterson, Brittany F., Raje, Kapil R., Hottel, Benjamin A., Armisen, David, Crumiere, Antonin Jean Johan, Refki, Peter Nagui, Santos, Maria Emilia, Sghaier, Essia, Viala, Severine, Khila, Abderrahman, Ahn, Seung-Joon, Childers, Christopher, Lee, Chien-Yueh, Lin, Han, Hughes, Daniel S. T., Duncan, Elizabeth J., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harshavardhan, Worley, Kim C., Muzny, Donna M., Wheeler, David, Panfilio, Kristen A., Jentzsch, Iris M. Vargas, Vargo, Edward L., Booth, Warren, Friedrich, Markus, Weirauch, Matthew T., Anderson, Michelle A. E., Jones, Jeffery W., Mittapalli, Omprakash, Zhao, Chaoyang, Zhou, Jing-Jiang, Evans, Jay D., Attardo, Geoffrey M., Robertson, Hugh M., Zdobnov, Evgeny M., Ribeiro, Jose M. C., Gibbs, Richard A., Werren, John H., Palli, Subba R., Schal, Coby, Richards, Stephen, Entomology, Benoit, Joshua B., Adelman, Zach N., Reinhardt, Klaus, Dolan, Amanda M., Poelchau, Monica, Jennings, Emily C., Szuter, Elise M., Hagan, Richard W., Gujar, Hemant, Shukla, Jayendra Nath, Zhu, Fang, Mohan, M., Nelson, David R., Rosendale, Andrew J., Derst, Christian, Resnik, Valentina, Wernig, Sebastian, Menegazzi, Pamela, Wegener, Christian, Peschel, Nicolai, Hendershot, Jacob M., Blenau, Wolfgang, Predel, Reinhard, Johnston, Paul R., Ioannidis, Panagiotis, Waterhouse, Robert M., Nauen, Ralf, Schorn, Corinna, Ott, Mark-Christoph, Maiwald, Frank, Johnston, J. Spencer, Gondhalekar, Ameya D., Scharf, Michael E., Peterson, Brittany F., Raje, Kapil R., Hottel, Benjamin A., Armisen, David, Crumiere, Antonin Jean Johan, Refki, Peter Nagui, Santos, Maria Emilia, Sghaier, Essia, Viala, Severine, Khila, Abderrahman, Ahn, Seung-Joon, Childers, Christopher, Lee, Chien-Yueh, Lin, Han, Hughes, Daniel S. T., Duncan, Elizabeth J., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harshavardhan, Worley, Kim C., Muzny, Donna M., Wheeler, David, Panfilio, Kristen A., Jentzsch, Iris M. Vargas, Vargo, Edward L., Booth, Warren, Friedrich, Markus, Weirauch, Matthew T., Anderson, Michelle A. E., Jones, Jeffery W., Mittapalli, Omprakash, Zhao, Chaoyang, Zhou, Jing-Jiang, Evans, Jay D., Attardo, Geoffrey M., Robertson, Hugh M., Zdobnov, Evgeny M., Ribeiro, Jose M. C., Gibbs, Richard A., Werren, John H., Palli, Subba R., Schal, Coby, and Richards, Stephen

Abstract

The bed bug, Cimex lectularius, has re-established itself as a ubiquitous human ectoparasite throughout much of the world during the past two decades. This global resurgence is likely linked to increased international travel and commerce in addition to widespread insecticide resistance. Analyses of the C. lectularius sequenced genome (650Mb) and 14,220 predicted protein-coding genes provide a comprehensive representation of genes that are linked to traumatic insemination, a reduced chemosensory repertoire of genes related to obligate hematophagy, host–symbiont interactions, and several mechanisms of insecticide resistance. In addition, we document the presence of multiple putative lateral gene transfer events. Genome sequencing and annotation establish a solid foundation for future research on mechanisms of insecticide resistance, human–bed bug and symbiont–bed bug associations, and unique features of bed bug biology that contribute to the unprecedented success of C. lectularius as a human ectoparasite

Published
2016

31. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface

Author

McKenna, Duane D., primary, Scully, Erin D., additional, Pauchet, Yannick, additional, Hoover, Kelli, additional, Kirsch, Roy, additional, Geib, Scott M., additional, Mitchell, Robert F., additional, Waterhouse, Robert M., additional, Ahn, Seung-Joon, additional, Arsala, Deanna, additional, Benoit, Joshua B., additional, Blackmon, Heath, additional, Bledsoe, Tiffany, additional, Bowsher, Julia H., additional, Busch, André, additional, Calla, Bernarda, additional, Chao, Hsu, additional, Childers, Anna K., additional, Childers, Christopher, additional, Clarke, Dave J., additional, Cohen, Lorna, additional, Demuth, Jeffery P., additional, Dinh, Huyen, additional, Doddapaneni, HarshaVardhan, additional, Dolan, Amanda, additional, Duan, Jian J., additional, Dugan, Shannon, additional, Friedrich, Markus, additional, Glastad, Karl M., additional, Goodisman, Michael A. D., additional, Haddad, Stephanie, additional, Han, Yi, additional, Hughes, Daniel S. T., additional, Ioannidis, Panagiotis, additional, Johnston, J. Spencer, additional, Jones, Jeffery W., additional, Kuhn, Leslie A., additional, Lance, David R., additional, Lee, Chien-Yueh, additional, Lee, Sandra L., additional, Lin, Han, additional, Lynch, Jeremy A., additional, Moczek, Armin P., additional, Murali, Shwetha C., additional, Muzny, Donna M., additional, Nelson, David R., additional, Palli, Subba R., additional, Panfilio, Kristen A., additional, Pers, Dan, additional, Poelchau, Monica F., additional, Quan, Honghu, additional, Qu, Jiaxin, additional, Ray, Ann M., additional, Rinehart, Joseph P., additional, Robertson, Hugh M., additional, Roehrdanz, Richard, additional, Rosendale, Andrew J., additional, Shin, Seunggwan, additional, Silva, Christian, additional, Torson, Alex S., additional, Jentzsch, Iris M. Vargas, additional, Werren, John H., additional, Worley, Kim C., additional, Yocum, George, additional, Zdobnov, Evgeny M., additional, Gibbs, Richard A., additional, and Richards, Stephen, additional

Published
2016
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32. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Author

Papanicolaou, Alexie, primary, Schetelig, Marc F., additional, Arensburger, Peter, additional, Atkinson, Peter W., additional, Benoit, Joshua B., additional, Bourtzis, Kostas, additional, Castañera, Pedro, additional, Cavanaugh, John P., additional, Chao, Hsu, additional, Childers, Christopher, additional, Curril, Ingrid, additional, Dinh, Huyen, additional, Doddapaneni, HarshaVardhan, additional, Dolan, Amanda, additional, Dugan, Shannon, additional, Friedrich, Markus, additional, Gasperi, Giuliano, additional, Geib, Scott, additional, Georgakilas, Georgios, additional, Gibbs, Richard A., additional, Giers, Sarah D., additional, Gomulski, Ludvik M., additional, González-Guzmán, Miguel, additional, Guillem-Amat, Ana, additional, Han, Yi, additional, Hatzigeorgiou, Artemis G., additional, Hernández-Crespo, Pedro, additional, Hughes, Daniel S. T., additional, Jones, Jeffery W., additional, Karagkouni, Dimitra, additional, Koskinioti, Panagiota, additional, Lee, Sandra L., additional, Malacrida, Anna R., additional, Manni, Mosè, additional, Mathiopoulos, Kostas, additional, Meccariello, Angela, additional, Murali, Shwetha C., additional, Murphy, Terence D., additional, Muzny, Donna M., additional, Oberhofer, Georg, additional, Ortego, Félix, additional, Paraskevopoulou, Maria D., additional, Poelchau, Monica, additional, Qu, Jiaxin, additional, Reczko, Martin, additional, Robertson, Hugh M., additional, Rosendale, Andrew J., additional, Rosselot, Andrew E., additional, Saccone, Giuseppe, additional, Salvemini, Marco, additional, Savini, Grazia, additional, Schreiner, Patrick, additional, Scolari, Francesca, additional, Siciliano, Paolo, additional, Sim, Sheina B., additional, Tsiamis, George, additional, Ureña, Enric, additional, Vlachos, Ioannis S., additional, Werren, John H., additional, Wimmer, Ernst A., additional, Worley, Kim C., additional, Zacharopoulou, Antigone, additional, Richards, Stephen, additional, and Handler, Alfred M., additional

Published
2016
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34. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

Author

Benoit, Joshua B., primary, Adelman, Zach N., additional, Reinhardt, Klaus, additional, Dolan, Amanda, additional, Poelchau, Monica, additional, Jennings, Emily C., additional, Szuter, Elise M., additional, Hagan, Richard W., additional, Gujar, Hemant, additional, Shukla, Jayendra Nath, additional, Zhu, Fang, additional, Mohan, M., additional, Nelson, David R., additional, Rosendale, Andrew J., additional, Derst, Christian, additional, Resnik, Valentina, additional, Wernig, Sebastian, additional, Menegazzi, Pamela, additional, Wegener, Christian, additional, Peschel, Nicolai, additional, Hendershot, Jacob M., additional, Blenau, Wolfgang, additional, Predel, Reinhard, additional, Johnston, Paul R., additional, Ioannidis, Panagiotis, additional, Waterhouse, Robert M., additional, Nauen, Ralf, additional, Schorn, Corinna, additional, Ott, Mark-Christoph, additional, Maiwald, Frank, additional, Johnston, J. Spencer, additional, Gondhalekar, Ameya D., additional, Scharf, Michael E., additional, Peterson, Brittany F., additional, Raje, Kapil R., additional, Hottel, Benjamin A., additional, Armisén, David, additional, Crumière, Antonin Jean Johan, additional, Refki, Peter Nagui, additional, Santos, Maria Emilia, additional, Sghaier, Essia, additional, Viala, Sèverine, additional, Khila, Abderrahman, additional, Ahn, Seung-Joon, additional, Childers, Christopher, additional, Lee, Chien-Yueh, additional, Lin, Han, additional, Hughes, Daniel S. T., additional, Duncan, Elizabeth J., additional, Murali, Shwetha C., additional, Qu, Jiaxin, additional, Dugan, Shannon, additional, Lee, Sandra L., additional, Chao, Hsu, additional, Dinh, Huyen, additional, Han, Yi, additional, Doddapaneni, Harshavardhan, additional, Worley, Kim C., additional, Muzny, Donna M., additional, Wheeler, David, additional, Panfilio, Kristen A., additional, Vargas Jentzsch, Iris M., additional, Vargo, Edward L., additional, Booth, Warren, additional, Friedrich, Markus, additional, Weirauch, Matthew T., additional, Anderson, Michelle A. E., additional, Jones, Jeffery W., additional, Mittapalli, Omprakash, additional, Zhao, Chaoyang, additional, Zhou, Jing-Jiang, additional, Evans, Jay D., additional, Attardo, Geoffrey M., additional, Robertson, Hugh M., additional, Zdobnov, Evgeny M., additional, Ribeiro, Jose M. C., additional, Gibbs, Richard A., additional, Werren, John H., additional, Palli, Subba R., additional, Schal, Coby, additional, and Richards, Stephen, additional

Published
2016
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35. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.

Author

Poynton, Helen C., Hasenbein, Simone, Benoit, Joshua B., Sepulveda, Maria S., Poelchau, Monica F., Hughes, Daniel S. T., Murali, Shwetha C., Chen, Shuai, Glastad, Karl M., Goodisman, Michael A. D., Werren, John H., Vineis, Joseph H., Bowen, Jennifer L., Friedrich, Markus, Jones, Jeffery, Robertson, Hugh M., Feyereisen, René, Mechler-Hickson, Alexandra, Mathers, Nicholas, and Lee, Carol Eunmi

Published
2018
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36. Comparative genomics of the miniature wasp and pest control agent <italic>Trichogramma pretiosum</italic>.

Author

Rugman-Jones, Paul F., Stouthamer, Richard, Lindsey, Amelia R. I., Kelkar, Yogeshwar D., Werren, John H., Martinson, Ellen O., Yan, Zhichao, Wu, Xin, Sun, Dan, Yi, Soojin V., Ye, Gongyin, Hughes, Daniel S. T., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, and Doddapaneni, Harsha Vardhan

Subjects
COMPARATIVE genomics, TRICHOGRAMMA, CHALCID wasps, BIOLOGICAL pest control, ASEXUAL reproduction, PARTHENOGENESIS
Abstract

Background: Trichogrammatids are minute parasitoid wasps that develop within other insect eggs. They are less than half a millimeter long, smaller than some protozoans. The Trichogrammatidae are one of the earliest branching families of Chalcidoidea: a diverse superfamily of approximately half a million species of parasitoid wasps, proposed to have evolved from a miniaturized ancestor. Trichogramma are frequently used in agriculture, released as biological control agents against major moth and butterfly pests. Additionally, Trichogramma are well known for their symbiotic bacteria that induce asexual reproduction in infected females. Knowledge of the genome sequence of Trichogramma is a major step towards further understanding its biology and potential applications in pest control. Results: We report the 195-Mb genome sequence of Trichogramma pretiosum and uncover signatures of miniaturization and adaptation in Trichogramma and related parasitoids. Comparative analyses reveal relatively rapid evolution of proteins involved in ribosome biogenesis and function, transcriptional regulation, and ploidy regulation. Chalcids also show loss or especially rapid evolution of 285 gene clusters conserved in other Hymenoptera, including many that are involved in signal transduction and embryonic development. Comparisons between sexual and asexual lineages of Trichogramma pretiosum reveal that there is no strong evidence for genome degradation (e.g., gene loss) in the asexual lineage, although it does contain a lower repeat content than the sexual lineage. Trichogramma shows particularly rapid genome evolution compared to other hymenopterans. We speculate these changes reflect adaptations to miniaturization, and to life as a specialized egg parasitoid. Conclusions: The genomes of Trichogramma and related parasitoids are a valuable resource for future studies of these diverse and economically important insects, including explorations of parasitoid biology, symbiosis, asexuality, biological control, and the evolution of miniaturization. Understanding the molecular determinants of parasitism can also inform mass rearing of Trichogramma and other parasitoids for biological control. [ABSTRACT FROM AUTHOR]

Published
2018
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37. Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

Author

Neafsey, Daniel E., primary, Waterhouse, Robert M., additional, Abai, Mohammad R., additional, Aganezov, Sergey S., additional, Alekseyev, Max A., additional, Allen, James E., additional, Amon, James, additional, Arcà, Bruno, additional, Arensburger, Peter, additional, Artemov, Gleb, additional, Assour, Lauren A., additional, Basseri, Hamidreza, additional, Berlin, Aaron, additional, Birren, Bruce W., additional, Blandin, Stephanie A., additional, Brockman, Andrew I., additional, Burkot, Thomas R., additional, Burt, Austin, additional, Chan, Clara S., additional, Chauve, Cedric, additional, Chiu, Joanna C., additional, Christensen, Mikkel, additional, Costantini, Carlo, additional, Davidson, Victoria L. M., additional, Deligianni, Elena, additional, Dottorini, Tania, additional, Dritsou, Vicky, additional, Gabriel, Stacey B., additional, Guelbeogo, Wamdaogo M., additional, Hall, Andrew B., additional, Han, Mira V., additional, Hlaing, Thaung, additional, Hughes, Daniel S. T., additional, Jenkins, Adam M., additional, Jiang, Xiaofang, additional, Jungreis, Irwin, additional, Kakani, Evdoxia G., additional, Kamali, Maryam, additional, Kemppainen, Petri, additional, Kennedy, Ryan C., additional, Kirmitzoglou, Ioannis K., additional, Koekemoer, Lizette L., additional, Laban, Njoroge, additional, Langridge, Nicholas, additional, Lawniczak, Mara K. N., additional, Lirakis, Manolis, additional, Lobo, Neil F., additional, Lowy, Ernesto, additional, MacCallum, Robert M., additional, Mao, Chunhong, additional, Maslen, Gareth, additional, Mbogo, Charles, additional, McCarthy, Jenny, additional, Michel, Kristin, additional, Mitchell, Sara N., additional, Moore, Wendy, additional, Murphy, Katherine A., additional, Naumenko, Anastasia N., additional, Nolan, Tony, additional, Novoa, Eva M., additional, O’Loughlin, Samantha, additional, Oringanje, Chioma, additional, Oshaghi, Mohammad A., additional, Pakpour, Nazzy, additional, Papathanos, Philippos A., additional, Peery, Ashley N., additional, Povelones, Michael, additional, Prakash, Anil, additional, Price, David P., additional, Rajaraman, Ashok, additional, Reimer, Lisa J., additional, Rinker, David C., additional, Rokas, Antonis, additional, Russell, Tanya L., additional, Sagnon, N’Fale, additional, Sharakhova, Maria V., additional, Shea, Terrance, additional, Simão, Felipe A., additional, Simard, Frederic, additional, Slotman, Michel A., additional, Somboon, Pradya, additional, Stegniy, Vladimir, additional, Struchiner, Claudio J., additional, Thomas, Gregg W. C., additional, Tojo, Marta, additional, Topalis, Pantelis, additional, Tubio, José M. C., additional, Unger, Maria F., additional, Vontas, John, additional, Walton, Catherine, additional, Wilding, Craig S., additional, Willis, Judith H., additional, Wu, Yi-Chieh, additional, Yan, Guiyun, additional, Zdobnov, Evgeny M., additional, Zhou, Xiaofan, additional, Catteruccia, Flaminia, additional, Christophides, George K., additional, Collins, Frank H., additional, Cornman, Robert S., additional, Crisanti, Andrea, additional, Donnelly, Martin J., additional, Emrich, Scott J., additional, Fontaine, Michael C., additional, Gelbart, William, additional, Hahn, Matthew W., additional, Hansen, Immo A., additional, Howell, Paul I., additional, Kafatos, Fotis C., additional, Kellis, Manolis, additional, Lawson, Daniel, additional, Louis, Christos, additional, Luckhart, Shirley, additional, Muskavitch, Marc A. T., additional, Ribeiro, José M., additional, Riehle, Michael A., additional, Sharakhov, Igor V., additional, Tu, Zhijian, additional, Zwiebel, Laurence J., additional, and Besansky, Nora J., additional

Published
2015
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38. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima

Author

Chipman, Ariel D, Ferrier, David E K, Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S T, Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C, Alonso, Claudio R, Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C J, Blankenburg, Kerstin P, Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K, Du Pasquier, Louis, Duncan, Elizabeth J, Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D, Extavour, Cassandra G, Francisco, Liezl, Gabaldón, Toni, Gillis, William J, Goodwin-Horn, Elizabeth A, Green, Jack E, Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J P, Gubbala, Sai, Guigó, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Hayden, Luke, Helbing, Sophie, Holder, Michael, Hui, Jerome H L, Hunn, Julia P, Hunnekuhl, Vera S, Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N, Jiggins, Francis M, Jones, Tamsin E, Kaiser, Tobias S, Kalra, Divya, Kenny, Nathan J, Korchina, Viktoriya, Kovar, Christie L, Kraus, F Bernhard, Lapraz, François, Lee, Sandra L, Lv, Jie, Mandapat, Christigale, Manning, Gerard, Mariotti, Marco, Mata, Robert, Mathew, Tittu, Neumann, Tobias, Newsham, Irene, Ngo, Dinh N, Ninova, Maria, Okwuonu, Geoffrey, Ongeri, Fiona, Palmer, William J, Patil, Shobha, Patraquim, Pedro, Pham, Christopher, Pu, Ling-Ling, Putman, Nicholas H, Rabouille, Catherine, Ramos, Olivia Mendivil, Rhodes, Adelaide C, Robertson, Helen E, Robertson, Hugh M, Ronshaugen, Matthew, Rozas, Julio, Saada, Nehad, Sánchez-Gracia, Alejandro, Scherer, Steven E, Schurko, Andrew M, Siggens, Kenneth W, Simmons, DeNard, Stief, Anna, Stolle, Eckart, Telford, Maximilian J, Tessmar-Raible, Kristin, Thornton, Rebecca, van der Zee, Maurijn, von Haeseler, Arndt, Williams, James M, Willis, Judith H, Wu, Yuanqing, Zou, Xiaoyan, Lawson, Daniel, Muzny, Donna M, Worley, Kim C, Gibbs, Richard A, Akam, Michael, Richards, Stephen, Chipman, Ariel D, Ferrier, David E K, Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S T, Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C, Alonso, Claudio R, Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C J, Blankenburg, Kerstin P, Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K, Du Pasquier, Louis, Duncan, Elizabeth J, Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D, Extavour, Cassandra G, Francisco, Liezl, Gabaldón, Toni, Gillis, William J, Goodwin-Horn, Elizabeth A, Green, Jack E, Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J P, Gubbala, Sai, Guigó, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Hayden, Luke, Helbing, Sophie, Holder, Michael, Hui, Jerome H L, Hunn, Julia P, Hunnekuhl, Vera S, Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N, Jiggins, Francis M, Jones, Tamsin E, Kaiser, Tobias S, Kalra, Divya, Kenny, Nathan J, Korchina, Viktoriya, Kovar, Christie L, Kraus, F Bernhard, Lapraz, François, Lee, Sandra L, Lv, Jie, Mandapat, Christigale, Manning, Gerard, Mariotti, Marco, Mata, Robert, Mathew, Tittu, Neumann, Tobias, Newsham, Irene, Ngo, Dinh N, Ninova, Maria, Okwuonu, Geoffrey, Ongeri, Fiona, Palmer, William J, Patil, Shobha, Patraquim, Pedro, Pham, Christopher, Pu, Ling-Ling, Putman, Nicholas H, Rabouille, Catherine, Ramos, Olivia Mendivil, Rhodes, Adelaide C, Robertson, Helen E, Robertson, Hugh M, Ronshaugen, Matthew, Rozas, Julio, Saada, Nehad, Sánchez-Gracia, Alejandro, Scherer, Steven E, Schurko, Andrew M, Siggens, Kenneth W, Simmons, DeNard, Stief, Anna, Stolle, Eckart, Telford, Maximilian J, Tessmar-Raible, Kristin, Thornton, Rebecca, van der Zee, Maurijn, von Haeseler, Arndt, Williams, James M, Willis, Judith H, Wu, Yuanqing, Zou, Xiaoyan, Lawson, Daniel, Muzny, Donna M, Worley, Kim C, Gibbs, Richard A, Akam, Michael, and Richards, Stephen

Abstract

Myriapods (e.g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific l

Published
2014

39. The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

Author

Chipman, Ariel D., primary, Ferrier, David E. K., additional, Brena, Carlo, additional, Qu, Jiaxin, additional, Hughes, Daniel S. T., additional, Schröder, Reinhard, additional, Torres-Oliva, Montserrat, additional, Znassi, Nadia, additional, Jiang, Huaiyang, additional, Almeida, Francisca C., additional, Alonso, Claudio R., additional, Apostolou, Zivkos, additional, Aqrawi, Peshtewani, additional, Arthur, Wallace, additional, Barna, Jennifer C. J., additional, Blankenburg, Kerstin P., additional, Brites, Daniela, additional, Capella-Gutiérrez, Salvador, additional, Coyle, Marcus, additional, Dearden, Peter K., additional, Du Pasquier, Louis, additional, Duncan, Elizabeth J., additional, Ebert, Dieter, additional, Eibner, Cornelius, additional, Erikson, Galina, additional, Evans, Peter D., additional, Extavour, Cassandra G., additional, Francisco, Liezl, additional, Gabaldón, Toni, additional, Gillis, William J., additional, Goodwin-Horn, Elizabeth A., additional, Green, Jack E., additional, Griffiths-Jones, Sam, additional, Grimmelikhuijzen, Cornelis J. P., additional, Gubbala, Sai, additional, Guigó, Roderic, additional, Han, Yi, additional, Hauser, Frank, additional, Havlak, Paul, additional, Hayden, Luke, additional, Helbing, Sophie, additional, Holder, Michael, additional, Hui, Jerome H. L., additional, Hunn, Julia P., additional, Hunnekuhl, Vera S., additional, Jackson, LaRonda, additional, Javaid, Mehwish, additional, Jhangiani, Shalini N., additional, Jiggins, Francis M., additional, Jones, Tamsin E., additional, Kaiser, Tobias S., additional, Kalra, Divya, additional, Kenny, Nathan J., additional, Korchina, Viktoriya, additional, Kovar, Christie L., additional, Kraus, F. Bernhard, additional, Lapraz, François, additional, Lee, Sandra L., additional, Lv, Jie, additional, Mandapat, Christigale, additional, Manning, Gerard, additional, Mariotti, Marco, additional, Mata, Robert, additional, Mathew, Tittu, additional, Neumann, Tobias, additional, Newsham, Irene, additional, Ngo, Dinh N., additional, Ninova, Maria, additional, Okwuonu, Geoffrey, additional, Ongeri, Fiona, additional, Palmer, William J., additional, Patil, Shobha, additional, Patraquim, Pedro, additional, Pham, Christopher, additional, Pu, Ling-Ling, additional, Putman, Nicholas H., additional, Rabouille, Catherine, additional, Ramos, Olivia Mendivil, additional, Rhodes, Adelaide C., additional, Robertson, Helen E., additional, Robertson, Hugh M., additional, Ronshaugen, Matthew, additional, Rozas, Julio, additional, Saada, Nehad, additional, Sánchez-Gracia, Alejandro, additional, Scherer, Steven E., additional, Schurko, Andrew M., additional, Siggens, Kenneth W., additional, Simmons, DeNard, additional, Stief, Anna, additional, Stolle, Eckart, additional, Telford, Maximilian J., additional, Tessmar-Raible, Kristin, additional, Thornton, Rebecca, additional, van der Zee, Maurijn, additional, von Haeseler, Arndt, additional, Williams, James M., additional, Willis, Judith H., additional, Wu, Yuanqing, additional, Zou, Xiaoyan, additional, Lawson, Daniel, additional, Muzny, Donna M., additional, Worley, Kim C., additional, Gibbs, Richard A., additional, Akam, Michael, additional, and Richards, Stephen, additional

Published
2014
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40. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

Author

Dasmahapatra, Kanchon K, Walters, James R, Briscoe, Adriana D, Davey, John W, Whibley, Annabel, Nadeau, Nicola J, Zimin, Aleksey V, Hughes, Daniel S. T, Ferguson, Laura C, Martin, Simon H, Salazar, Camilo, Supple, Megan, Dasmahapatra, Kanchon K, Walters, James R, Briscoe, Adriana D, Davey, John W, Whibley, Annabel, Nadeau, Nicola J, Zimin, Aleksey V, Hughes, Daniel S. T, Ferguson, Laura C, Martin, Simon H, Salazar, Camilo, and Supple, Megan

Published
2012

42. Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

Author

Kersey, Paul J., primary, Staines, Daniel M., additional, Lawson, Daniel, additional, Kulesha, Eugene, additional, Derwent, Paul, additional, Humphrey, Jay C., additional, Hughes, Daniel S. T., additional, Keenan, Stephan, additional, Kerhornou, Arnaud, additional, Koscielny, Gautier, additional, Langridge, Nicholas, additional, McDowall, Mark D., additional, Megy, Karine, additional, Maheswari, Uma, additional, Nuhn, Michael, additional, Paulini, Michael, additional, Pedro, Helder, additional, Toneva, Iliana, additional, Wilson, Derek, additional, Yates, Andrew, additional, and Birney, Ewan, additional

Published
2011
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43. Extensive molecular differences between anterior- and posterior-half-sclerotomes underlie somite polarity and spinal nerve segmentation.

Author

Hughes, Daniel S. T., Keynes, Roger J., and Tannahill, David

Subjects
*SOMITE, *SPINE, *NERVES, *EMBRYOLOGY, *GENE expression
Abstract

Background: The polarization of somite-derived sclerotomes into anterior and posterior halves underlies vertebral morphogenesis and spinal nerve segmentation. To characterize the full extent of molecular differences that underlie this polarity, we have undertaken a systematic comparison of gene expression between the two sclerotome halves in the mouse embryo. Results: Several hundred genes are differentially-expressed between the two sclerotome halves, showing that a marked degree of molecular heterogeneity underpins the development of somite polarity. Conclusion: We have identified a set of genes that warrant further investigation as regulators of somite polarity and vertebral morphogenesis, as well as repellents of spinal axon growth. Moreover the results indicate that, unlike the posterior half-sclerotome, the central region of the anterior-half-sclerotome does not contribute bone and cartilage to the vertebral column, being associated instead with the development of the segmented spinal nerves. [ABSTRACT FROM AUTHOR]

Published
2009
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44. Additional file of Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Author

Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Hsu Chao, Mengyao Chen, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Brantley Hall, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Jarvela, Alys M. Cheatle, J. Spencer Johnston, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Shwetha C. Murali, Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora Pires, Pick, Leslie, Poelchau, Monica F., Jiaxin Qu, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Zhijian Jake Tu, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., and Gundersen-Rindal, Dawn E.

Subjects
fungi, 15. Life on land
Abstract

Additional file of Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

45. Additional file of Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Author

Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Hsu Chao, Mengyao Chen, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Brantley Hall, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Jarvela, Alys M. Cheatle, J. Spencer Johnston, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Shwetha C. Murali, Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora Pires, Pick, Leslie, Poelchau, Monica F., Jiaxin Qu, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Zhijian Jake Tu, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., and Gundersen-Rindal, Dawn E.

Subjects
fungi, 15. Life on land
Abstract

Additional file of Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

46. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Author

Jiaxin Qu, Hsu Chao, Kostas Bourtzis, John P. Cavanaugh, Mosè Manni, Shannon Dugan, Angela Meccariello, John H. Werren, Panagiota Koskinioti, Miguel González-Guzmán, Ludvik M. Gomulski, Markus Friedrich, Hugh M. Robertson, Patrick Schreiner, Grazia Savini, Daniel S.T. Hughes, Yi Han, Georgios Georgakilas, Richard A. Gibbs, Giuseppe Saccone, Terence Murphy, Jeffery W. Jones, Paolo Siciliano, Kim C. Worley, Huyen Dinh, Pedro Castañera, Ernst A. Wimmer, Sarah D. Giers, Shwetha C. Murali, Antigone Zacharopoulou, Andrew J. Rosendale, Donna M. Muzny, Harshavardhan Doddapaneni, Félix Ortego, Alfred M. Handler, Monica Munoz-Torres, Christopher P. Childers, Pedro Hernández-Crespo, Dimitra Karagkouni, Maria D. Paraskevopoulou, Francesca Scolari, Joshua B. Benoit, Ingrid Curril, Sheina B. Sim, Ioannis S. Vlachos, Marco Salvemini, George Tsiamis, Amanda Dolan, Andrew E. Rosselot, Peter Arensburger, Stephen Richards, Kostas D. Mathiopoulos, Martin Reczko, Ana Guillem-Amat, Georg Oberhofer, Scott M. Geib, Alexie Papanicolaou, Enric Ureña, Monica F. Poelchau, Giuliano Gasperi, Anna R. Malacrida, Marc F. Schetelig, Sandra L. Lee, Artemis G. Hatzigeorgiou, Peter W. Atkinson, National Institute of Food and Agriculture (US), Papanicolaou, Alexie, Schetelig, Marc F, Arensburger, Peter, Atkinson, Peter W, Benoit, Joshua B, Bourtzis, Kosta, Castañera, Pedro, Cavanaugh, John P, Chao, Hsu, Childers, Christopher, Curril, Ingrid, Dinh, Huyen, Doddapaneni, Harshavardhan, Dolan, Amanda, Dugan, Shannon, Friedrich, Marku, Gasperi, Giuliano, Geib, Scott, Georgakilas, Georgio, Gibbs, Richard A, Giers, Sarah D, Gomulski, Ludvik M, González Guzmán, Miguel, Guillem Amat, Ana, Han, Yi, Hatzigeorgiou, Artemis G, Hernández Crespo, Pedro, Hughes, Daniel S. T, Jones, Jeffery W, Karagkouni, Dimitra, Koskinioti, Panagiota, Lee, Sandra L, Malacrida, Anna R, Manni, Mosè, Mathiopoulos, Kosta, Meccariello, Angela, Murali, Shwetha C, Murphy, Terence D, Muzny, Donna M, Oberhofer, Georg, Ortego, Félix, Paraskevopoulou, Maria D, Poelchau, Monica, Qu, Jiaxin, Reczko, Martin, Robertson, Hugh M, Rosendale, Andrew J, Rosselot, Andrew E, Saccone, Giuseppe, Salvemini, Marco, Savini, Grazia, Schreiner, Patrick, Scolari, Francesca, Siciliano, Paolo, Sim, Sheina B, Tsiamis, George, Ureña, Enric, Vlachos, Ioannis S, Werren, John H, Wimmer, Ernst A, Worley, Kim C, Zacharopoulou, Antigone, Richards, Stephen, and Handler, Alfred M.

Subjects
Mediterranean climate, 0301 basic medicine, Integrated pest management, Gene family evolution, Insect invasiveness, 05 Environmental Sciences, Genome, Insect, Genome, Animals, Genetically Modified, Sterile insect technique, Insect invasivene, 0302 clinical medicine, Genetics & Heredity, 2. Zero hunger, Genetics, biology, genome sequence, Mediterranean fruit fly, highly invasive pest species, High-Throughput Nucleotide Sequencing, Ceratitis capitata, Biological Evolution, 3. Good health, Tephritid genomics, Medfly genome, GERM-LINE TRANSFORMATION, Host adaptation, Erratum, Life Sciences & Biomedicine, DIPTERA TEPHRITIDAE, Bioinformatics, TRANSPOSABLE ELEMENT, Zoology, Insect orthology, PROGRAMMED CELL-DEATH, BACTERIA-BINDING PROTEIN, 03 medical and health sciences, Molecular evolution, Medfly integrated pest management (IPM), Animals, Humans, Pest Control, Biological, Drosophila, Whole genome sequencing, 08 Information And Computing Sciences, Science & Technology, ANASTREPHA-SUSPENSA, Research, fungi, Molecular Sequence Annotation, 06 Biological Sciences, biology.organism_classification, ANOPHELES-GAMBIAE, MOLECULAR EVOLUTION, Chromosomal synteny, 030104 developmental biology, Biotechnology & Applied Microbiology, DROSOPHILA-MELANOGASTER, PEST analysis, Insect adaptation, SEMINAL FLUID PROTEINS, Introduced Species, 030217 neurology & neurosurgery, Adaptive evolution
Abstract

31 p.-11 fig.-2 tab.+ Erratum (2 p.) Papanikolaou, Alexie et al., Background: The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control., Results: The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A highquality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT., Conclusions: The medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution, Support of this project was provided by the U.S. Department of Agriculture(USDA), Agricultural Research Service (ARS), Animal and Plant Health Inspection Service (APHIS), and National Institute of Food and Agriculture(NIFA)-Biotechnology Risk Assessment Grants Program (grant #2011-39211-30769 to AMH) for funding the initial phase of this project, and to the National Institutes of Health (NIH)-National Human Genome Research Institute (NHGRI) for funding the medfly genome sequencing, assembly and Maker 2.0 automated annotation as part of the i5K 30 genome pilot project (grant #U54 HG003273 to RAG). The NIH Intramural Research Program, National Library of Medicine funded the NCBI Gnomon annotation and the USDA-National Agricultural Library (NAL) provided support for the WebApollo curation website, with support for manual curation training (to MM-T) provided by NIGMS (grant #5R01GM080203),NHGRI (grant #5R01HG004483), and the U.S. Department of Energy(contract #DE-AC02-05CH11231). Support was provided for: toxin metabolism and insecticide resistance gene studies from MINECO,Spain (AGL2013-42632-R to FO and PH-C); microRNAs, horizontal gene transfer and bacterial contaminant studies from the European Social Fund and National Strategic Reference Framework-THALES (MIS375869 to KB, GT, AGH, and KM) and the U.S. National Science Foundation(DEB 1257053 to JHW); cuticle protein gene studies from USDA-NIFA(grant #2016-67012-24652 to AJR); sex-determination studies from L.R. Campania (grant 5/02, 2008 to GS); male reproduction and sexual differentiation studies from the FAO/IAEA (Technical Contract No: 16966 to GGa) and Cariplo IMPROVE (to FS); and programmed cell death gene studies and genomic data analysis (to MFS) from the Emmy Noether program, DFG(SCHE 1833/1-1) and the LOEWE Center for Insect Biotechnology & Bioresources grant of the Hessen State Ministry of Higher Education, Research and the Arts(HMWK), Germany and from the USDA-NIFA-Biotechnology Risk Assessment Grants Program (grant #2015-33522-24094 to AMH).

Published
2016

47. Reproductive Longevity Predicts Mutation Rates in Primates.

Author

Thomas GWC, Wang RJ, Puri A, Harris RA, Raveendran M, Hughes DST, Murali SC, Williams LE, Doddapaneni H, Muzny DM, Gibbs RA, Abee CR, Galinski MR, Worley KC, Rogers J, Radivojac P, and Hahn MW

Subjects
Animals, Aotidae genetics, Genetics, Population methods, Genome genetics, Humans, Mutation, Pedigree, Population Density, Primates genetics, Reproduction, Genetic Fitness genetics, Longevity genetics, Mutation Rate
Abstract

Mutation rates vary between species across several orders of magnitude, with larger organisms having the highest per-generation mutation rates. Hypotheses for this pattern typically invoke physiological or population-genetic constraints imposed on the molecular machinery preventing mutations [1]. However, continuing germline cell division in multicellular eukaryotes means that organisms with longer generation times and of larger size will leave more mutations to their offspring simply as a byproduct of their increased lifespan [2, 3]. Here, we deeply sequence the genomes of 30 owl monkeys (Aotus nancymaae) from six multi-generation pedigrees to demonstrate that paternal age is the major factor determining the number of de novo mutations in this species. We find that owl monkeys have an average mutation rate of 0.81 × 10 -8 per site per generation, roughly 32% lower than the estimate in humans. Based on a simple model of reproductive longevity that does not require any changes to the mutational machinery, we show that this is the expected mutation rate in owl monkeys. We further demonstrate that our model predicts species-specific mutation rates in other primates, including study-specific mutation rates in humans based on the average paternal age. Our results suggest that variation in life history traits alone can explain variation in the per-generation mutation rate among primates, and perhaps among a wide range of multicellular organisms., (Copyright © 2018 Elsevier Ltd. All rights reserved.)

Published
2018
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48. Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda.

Author

Eyun SI, Soh HY, Posavi M, Munro JB, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Park EO, Silva JC, Gibbs RA, Richards S, and Lee CE

Subjects
Animals, Chemoreceptor Cells physiology, Copepoda genetics, Crustacea genetics, Databases, Nucleic Acid, Evolution, Molecular, Genome genetics, Insecta genetics, Multigene Family genetics, Phylogeny, Arthropods genetics, Receptors, Odorant genetics
Abstract

Chemosensory-related gene (CRG) families have been studied extensively in insects, but their evolutionary history across the Arthropoda had remained relatively unexplored. Here, we address current hypotheses and prior conclusions on CRG family evolution using a more comprehensive data set. In particular, odorant receptors were hypothesized to have proliferated during terrestrial colonization by insects (hexapods), but their association with other pancrustacean clades and with independent terrestrial colonizations in other arthropod subphyla have been unclear. We also examine hypotheses on which arthropod CRG family is most ancient. Thus, we reconstructed phylogenies of CRGs, including those from new arthropod genomes and transcriptomes, and mapped CRG gains and losses across arthropod lineages. Our analysis was strengthened by including crustaceans, especially copepods, which reside outside the hexapod/branchiopod clade within the subphylum Pancrustacea. We generated the first high-resolution genome sequence of the copepod Eurytemora affinis and annotated its CRGs. We found odorant receptors and odorant binding proteins present only in hexapods (insects) and absent from all other arthropod lineages, indicating that they are not universal adaptations to land. Gustatory receptors likely represent the oldest chemosensory receptors among CRGs, dating back to the Placozoa. We also clarified and confirmed the evolutionary history of antennal ionotropic receptors across the Arthropoda. All antennal ionotropic receptors in E. affinis were expressed more highly in males than in females, suggestive of an association with male mate-recognition behavior. This study is the most comprehensive comparative analysis to date of CRG family evolution across the largest and most speciose metazoan phylum Arthropoda., (© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)

Published
2017
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49. Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

Author

Anstead CA, Korhonen PK, Young ND, Hall RS, Jex AR, Murali SC, Hughes DS, Lee SF, Perry T, Stroehlein AJ, Ansell BR, Breugelmans B, Hofmann A, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni HV, Worley KC, Muzny DM, Ioannidis P, Waterhouse RM, Zdobnov EM, James PJ, Bagnall NH, Kotze AC, Gibbs RA, Richards S, Batterham P, and Gasser RB

Subjects
Animals, Female, Insect Proteins genetics, Insecticide Resistance genetics, Insecticides pharmacology, Larva, Male, Transcriptome, Diptera genetics, Gene Expression Regulation physiology, Genome, Insect, Insect Proteins metabolism
Abstract

Lucilia cuprina is a parasitic fly of major economic importance worldwide. Larvae of this fly invade their animal host, feed on tissues and excretions and progressively cause severe skin disease (myiasis). Here we report the sequence and annotation of the 458-megabase draft genome of Lucilia cuprina. Analyses of this genome and the 14,544 predicted protein-encoding genes provide unique insights into the fly's molecular biology, interactions with the host animal and insecticide resistance. These insights have broad implications for designing new methods for the prevention and control of myiasis.

Published
2015
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50. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Author

Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, and Besansky NJ

Subjects
Animals, Anopheles classification, Base Sequence, Chromosomes, Insect genetics, Drosophila genetics, Humans, Insect Vectors classification, Molecular Sequence Data, Phylogeny, Sequence Alignment, Anopheles genetics, Evolution, Molecular, Genome, Insect, Insect Vectors genetics, Malaria transmission
Abstract

Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts., (Copyright © 2015, American Association for the Advancement of Science.)

Published
2015
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