1. EUAdb: A resource for COVID-19 test development and comparison.
- Author
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Woronik A, Shaffer HW, Kiontke K, Laurent JM, Zambrano R, Daley M, Boeke JD, and Fitch DHA
- Subjects
- COVID-19 diagnosis, Data Management organization & administration, Data Management standards, Emergency Treatment classification, Emergency Treatment methods, Humans, Internet, Laboratories standards, Reference Standards, Sensitivity and Specificity, United States, User-Computer Interface, COVID-19 Testing methods, COVID-19 Testing standards, Databases, Factual supply & distribution, Emergencies classification, United States Food and Drug Administration organization & administration
- Abstract
Due to the sheer number of COVID-19 (coronavirus disease 2019) cases there is a need for increased world-wide SARS-CoV-2 testing capability that is both efficient and effective. Having open and easy access to detailed information about these tests, their sensitivity, the types of samples they use, etc. would be highly useful to ensure their reproducibility, to help clients compare and decide which tests would be best suited for their applications, and to avoid costs of reinventing similar or identical tests. Additionally, this resource would provide a means of comparing the many innovative diagnostic tools that are currently being developed in order to provide a foundation of technologies and methods for the rapid development and deployment of tests for future emerging diseases. Such a resource might thus help to avert the delays in testing and screening that was observed in the early stages of the pandemic and plausibly led to more COVID-19-related deaths than necessary. We aim to address these needs via a relational database containing standardized ontology and curated data about COVID-19 diagnostic tests that have been granted Emergency Use Authorizations (EUAs) by the FDA (US Food and Drug Administration). Simple queries of this actively growing database demonstrate considerable variation among these tests with respect to sensitivity (limits of detection, LoD), controls and targets used, criteria used for calling results, sample types, reagents and instruments, and quality and amount of information provided., Competing Interests: JDB is a founder and director of the following: Neochromosome, Inc., the Center of Excellence for Engineering Biology, and CDI Labs, Inc. and serves on the Scientific Advisory Board of the following: Sangamo, Inc., Modern Meadow, Inc., and Sample6, Inc. This does not alter our adherence to PLOS ONE policies on sharing data and materials.
- Published
- 2021
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