1. Characterization of structural variation in Tibetans reveals new evidence of high-altitude adaptation and introgression.
- Author
-
Quan C, Li Y, Liu X, Wang Y, Ping J, Lu Y, and Zhou G
- Subjects
- Animals, Ethnicity genetics, High-Throughput Nucleotide Sequencing, Humans, Male, Neanderthals genetics, Repetitive Sequences, Nucleic Acid genetics, Tibet, Young Adult, Adaptation, Physiological genetics, Altitude, Genomic Structural Variation
- Abstract
Background: Structural variation (SV) acts as an essential mutational force shaping the evolution and function of the human genome. However, few studies have examined the role of SVs in high-altitude adaptation and little is known of adaptive introgressed SVs in Tibetans so far., Results: Here, we generate a comprehensive catalog of SVs in a Chinese Tibetan (n = 15) and Han (n = 10) population using nanopore sequencing technology. Among a total of 38,216 unique SVs in the catalog, 27% are sequence-resolved for the first time. We systematically assess the distribution of these SVs across repeat sequences and functional genomic regions. Through genotyping in additional 276 genomes, we identify 69 Tibetan-Han stratified SVs and 80 candidate adaptive genes. We also discover a few adaptive introgressed SV candidates and provide evidence for a deletion of 335 base pairs at 1p36.32., Conclusions: Overall, our results highlight the important role of SVs in the evolutionary processes of Tibetans' adaptation to the Qinghai-Tibet Plateau and provide a valuable resource for future high-altitude adaptation studies.
- Published
- 2021
- Full Text
- View/download PDF