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Aim The impacts of Holocene fires on the genetic architecture of fire-intolerant species have largely been overlooked. Here, we investigate the relative impacts of the last glacial climate versus Holocene fires on the genetic diversity of two co-occurring, fire-intolerant conifers using a comparative population genetic study. Location The palaeoendemic plant-rich montane rain forests and alpine coniferous heath of Tasmania, Australia. Methods The Tasmanian endemic conifers Athrotaxis cupressoides D. Don (461 samples from 20 populations) and Diselma archeri Hook.f. (576 samples from 23 populations, 16 of which were for sites sampled for A. cupressoides), were genotyped using eight and nine EST nuclear microsatellites respectively. Genetic diversity and structure was compared between the two species and the factors underlying genetic patterns in both species were investigated by examining isolation by distance, correlations with Last Glacial Maximum modelled distributions and the fossil record, and a fire history index of the sampled stands. Results The range-wide genetic structure of the two species was similar ( Fst = 0.09 and F'st = 0.21 for A. cupressoides versus D. archeri; Fst = 0.06 and F'st = 0.24), and there were significant correlations between species for population-based expected heterozygosity, allelic richness, private allelic richness and pairwise genetic divergences. Furthermore, genetic diversity metrics decreased significantly with an index of fire history. Given fossil evidence and modelling evidence that both species occurred near their current ranges during the last glaciation and a lack of evidence for isolation by distance in either species, the plausible explanation for the patterns of diversity is genetic decline resulting from repeated Holocene fires. Main conclusions Our study suggests that fire can have substantial impacts on genetic structure and diversity of plant species, particularly those without fire-tolerant traits, and that any increases in fire resulting from climate change may impose substantial threats to such species. In Tasmania, the observed increase in dry lightning in recent years, combined with periods of abnormally dry conditions, may therefore further degrade the range and genetic diversity of fire-intolerant palaeoendemic species. [ABSTRACT FROM AUTHOR]

Premise of the Study: Homoploid hybrid speciation is receiving growing attention due the increasing recognition of its role in speciation. We investigate if individuals intermediate in morphology between the two species of the conifer genus Athrotaxis represent a homoploid hybrid species, A. laxifolia, or are spontaneous F1 hybrids., Methods: A total of 1055 individuals of Athrotaxis cupressoides and A. selaginoides, morphologically intermediate individuals, and two putative hybrid swarms were sampled across the range of the genus and genotyped with 13 microsatellites. We used simulations to test the power of our data to identify the pure species, F1s, F2s, and backcross generations., Key Results: We found that Athrotaxis cupressoides and A. selaginoides are likely the most divergent congeneric conifers known, but the intermediates are F1 hybrids, sharing one allele each from A. cupressoides and A. selaginoides at six loci with completely species specific alleles. The hybrid swarms contain wide genetic variation with stronger affinities to the locally dominant species, A. selaginoides and A. selaginoides backcrosses outnumbering A. cupressoides backcrosses. In addition, we observed evidence for isolated advanced generation backcrosses within the range of the pure species., Conclusions: We conclude that, even though they can be large and long-lived, Athrotaxis hybrid swarms are on a trajectory of decline and will eventually be reabsorbed by the parental species. However, this process may take millennia and fossil evidence suggests that such events have occurred repeatedly since the early Quaternary. Given this timeline, our study highlights the many obstacles to homoploid hybrid speciation., (© 2016 Botanical Society of America.)