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Atlantification, known as impacts of high-latitude Atlantic water inflows on the Arctic Ocean has strengthened owing to climate change, corresponding to the rapid ice retreat in the Arctic. The relationship between phytoplankton and environmental changes in the Arctic on the interannual scale is unclear because of the lack of long-time series data. In this study, we discuss the ecological response to Atlantic water intrusion in the Kongsfjorden,Svalbard. We measured chlorophyll a and photosynthesis pigments for the water column samples from a fixed section along the Kongsfjorden to study the response of phytoplankton biomass and communities to Atlantic water intrusion in the summer season from 2007 to 2018. The results showed that dinoflagellates, prasinophytes, cryptophytes, and chlorophytes consistently accounted for over 50% of the total biomass, with the distinct annual variation of chlorophyll a. Bioavailable nitrogen was the main limiting factor on phytoplankton growth in the study area, as inferred by its concentration and nutrients ratios. The relationship between phytoplankton and water mass analysis suggested that the intrusion of Atlantic water in Kongsfjorden may cause interannual variability of the phytoplankton biomass and community structure by influencing the nutrient supply and water stratification in the fjord region. Our study provides insights into the ongoing impact of Atlantification on the phytoplankton community in the Arctic fjord., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)