1. Multidrug resistance plasmids underlie clonal expansions and international spread of Salmonella enterica serotype 1,4,[5],12:i:- ST34 in Southeast Asia.
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Chung The, Hao, Pham, Phuong, Ha Thanh, Tuyen, Phuong, Linh Vo Kim, Yen, Nguyen Phuong, Le, Son-Nam H., Vu Thuy, Duong, Chau, Tran Thi Hong, Le Phuc, Hoang, Ngoc, Nguyen Minh, Vi, Lu Lan, Mather, Alison E., Thwaites, Guy E., Thomson, Nicholas R., Baker, Stephen, and Pham, Duy Thanh
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MULTIDRUG resistance ,SALMONELLA typhimurium ,PLASMIDS ,DRUG resistance in microorganisms ,GENOMES ,SALMONELLA enterica ,SALMONELLA enterica serovar typhimurium - Abstract
Salmonella enterica serotype 1,4,[5],12:i:- (Typhimurium monophasic variant) of sequence type (ST) 34 has emerged as the predominant pandemic genotype in recent decades. Despite increasing reports of resistance to antimicrobials in Southeast Asia, Salmonella ST34 population structure and evolution remained understudied in the region. Here we performed detailed genomic investigations on 454 ST34 genomes collected from Vietnam and diverse geographical sources to elucidate the pathogen's epidemiology, evolution and antimicrobial resistance. We showed that ST34 has been introduced into Vietnam in at least nine occasions since 2000, forming five co-circulating major clones responsible for paediatric diarrhoea and bloodstream infection. Most expansion events were associated with acquisitions of large multidrug resistance plasmids of IncHI2 or IncA/C2. Particularly, the self-conjugative IncA/C2 pST34VN2 (co-transferring bla
CTX-M-55 , mcr-3.1, and qnrS1) underlies local expansion and intercontinental spread in two separate ST34 clones. At the global scale, Southeast Asia was identified as a potential hub for the emergence and dissemination of multidrug resistant Salmonella ST34, and mutation analysis suggests of selection in antimicrobial responses and key virulence factors. A genomic epidemiology approach describes the population structure of Salmonella monophasic Typhimurium ST34 from Vietnam, and identifies Southeast Asia as a potential hub for the emergence and international spread of multidrug resistant Salm. ST34. [ABSTRACT FROM AUTHOR]- Published
- 2023
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