1. Genomic Predictions in Korean Hanwoo Cows: A Comparative Analysis of Genomic BLUP and Bayesian Methods for Reproductive Traits.
- Author
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Haque, Md Azizul, Lee, Yun-Mi, Ha, Jae-Jung, Jin, Shil, Park, Byoungho, Kim, Nam-Young, Won, Jeong-Il, and Kim, Jong-Joo
- Subjects
BEEF cattle ,GENOMICS ,BEEF cattle breeds ,BEEF industry ,COWS ,CATTLE breeds - Abstract
Simple Summary: Historically, Korea has been an agrarian society where cattle played a significant role in Korean culture as working animals. However, in recent decades, there has been an increase in meat demand and the expansion of the Korean economy. This shift has led to the predominant use of native Korean Hanwoo cattle for beef production since the 1960s. Genetic improvement programs for Hanwoo cattle traditionally focused on carcass and growth qualities due to the accessibility of trait information and the simplicity of analysis techniques, rather than reproductive traits. However, there has been a recent surge of interest in genetic analyses of the reproductive traits of Hanwoo cattle because these traits significantly impact calf productivity. To enhance beef production and the overall profitability of Hanwoo farming, it is imperative to implement genomic predictions for age at first calving (AFC), calving interval (CI), gestation length (GL), and number of artificial inseminations per conception (NAIPC) to better understand and improve their response to selection. This study aimed to estimate heritability and the accuracy of genomic estimated breeding values (GEBVs) using genomic best linear unbiased prediction (GBLUP) and Bayesian methods (BayesB, BayesLASSO, and BayesR) for traits under study. Our analysis revealed relatively lower heritability values for these traits and indicated that the accuracy of genomic prediction across all methods applied was similarly reduced, likely due to the inherent lower heritability of reproductive traits. As a result, the findings of this study provide valuable insights into the genetic breeding programs of the beef cattle industry. This study aimed to predict the accuracy of genomic estimated breeding values (GEBVs) for reproductive traits in Hanwoo cows using the GBLUP, BayesB, BayesLASSO, and BayesR methods. Accuracy estimates of GEBVs for reproductive traits were derived through fivefold cross-validation, analyzing a dataset comprising 11,348 animals and employing an Illumina Bovine 50K SNP chip. GBLUP showed an accuracy of 0.26 for AFC, while BayesB, BayesLASSO, and BayesR demonstrated values of 0.28, 0.29, and 0.29, respectively. For CI, GBLUP attained an accuracy of 0.19, whereas BayesB, BayesLASSO, and BayesR scored 0.21, 0.24, and 0.25, respectively. The accuracy for GL was uniform across GBLUP, BayesB, and BayesR at 0.31, whereas BayesLASSO showed a slightly higher accuracy of 0.33. For NAIPC, GBLUP showed an accuracy of 0.24, while BayesB, BayesLASSO, and BayesR recorded 0.22, 0.27, and 0.30, respectively. The variation in genomic prediction accuracy among methods indicated Bayesian approaches slightly outperformed GBLUP. The findings suggest that Bayesian methods, notably BayesLASSO and BayesR, offer improved predictive capabilities for reproductive traits. Future research may explore more advanced genomic approaches to enhance predictive accuracy and genetic gains in Hanwoo cattle breeding programs. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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