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Climate and land use changes are eroding biodiversity globally, and reptiles are highlighted as being particularly susceptible. In South Africa, global changes threaten the persistence of an assemblage of dwarf chameleons (Bradypodion) located in a biodiversity hotspot. We used ecological niche modelling to assess the combined effect of climate change and habitat transformation on these species and assessed their susceptibility in a vulnerability framework under optimistic and pessimistic change scenarios. Although our models showed a gain in suitable climatic space for all coastal species in some scenarios, considerable losses were predicted for most species under the most pessimistic change scenarios. Bradypodion ngomeense, for example is predicted to incur a complete loss of climatic suitability by 2050. The vulnerability framework predicts inland species to be more adversely affected by climate change than coastal species. However, no species show resilience to the combined effects of climate change and habitat transformation. Our models predicted a loss of climatically suitable habitat for most species in protected areas. These findings highlight the importance of a protected area network design to remain a step ahead of these anticipated changes. [ABSTRACT FROM AUTHOR]

The Red List Index (RLI) measures change in the aggregate extinction risk of species. It is a key indicator for tracking progress toward nine of the Aichi and many proposed post‐2020 Global Biodiversity Framework Targets. Here, we consider two formulations of the RLI used for reporting biodiversity trends at national scales. Disaggregated global RLIs measure changing national contributions to global extinction risk and are currently based on five taxonomic groups, while national RLIs measure changing national extinction risk and are based on taxonomic groups assessed multiple times in country. For 74% of nations, the disaggregated global RLI is currently based on three or fewer taxonomic groups. Meanwhile, national RLIs from selected pilot countries Finland, South Africa, and Brazil are computed from twelve, eight, and nine taxonomic groups, respectively. The national RLI and the disaggregated global RLI measure different aspects of biodiversity, in that the former detects national trends in populations of species for which each country is responsible while the latter provides standardized comparisons of nations' contributions to the global extinction risk of the same species groups. As governments commit to the post‐2020 Global Biodiversity Framework, we encourage them to monitor a standard set of taxonomic groups representing different biomes using both RLI formulations to ensure effective target tracking and accurate feedback on their conservation investments. [ABSTRACT FROM AUTHOR]

Genetic diversity provides the capacity for species to evolve in response to environmental change, and its importance in assessing the status of species is well established. However, there is a paucity of genetic monitoring studies. The Endangered western leopard toad (Sclerophrys pantherina), endemic to South Africa, is a good candidate for genetic monitoring, due to its restricted distribution consisting of two disjunct populations (within the City of Cape Town (CoCT) and the Overstrand), with the CoCT population having experienced more drastic habitat alteration due to urbanisation, and presumably a large population decline. To establish a baseline for genetic monitoring, we examined the change in genetic diversity and structure within the CoCT population across two time periods (2008 and 2018) using 12 microsatellite markers. Despite monitoring occurring over only four generations, there is evidence of increased inbreeding and a shift in the genetic structure. These changes are likely due to previous, severe impacts on the population, with 91% of natural habitat lost in the study area. There is also evidence of at least three historical bottlenecks that are likely the initial cause of inbreeding, with extreme habitat loss in the twentieth century leading to the genetic changes detected within the last decade. Although declines in allelic richness were not detected, the inbreeding and change in genetic structure can be considered early warning signs of genetic erosion, even over a short monitoring interval. This provides a baseline for future monitoring, with the ultimate goal of tracking long-term trends to guide conservation actions. [ABSTRACT FROM AUTHOR]

The mechanisms that underpin ecological speciation, morphological convergence and the evolution of ecological morphotypes (ecomorphs) in squamates have allowed for a better appreciation of the speciation process in chameleons. In particular, attention has been drawn to several populations of chameleons (Sauria, Chamaeleonidae, Bradypodion) from the Cape Fold Mountains, South Africa. Previous work suggested that these populations are genetically divergent, but with strong similarities in phenotype. Using an integrative taxonomic approach that accounts for genetic diversity, habitat and morphology, three of these populations are described as species. One population is from an isolated forest patch and is genetically different at the species level, but morphologically similar to Bradypodion damaranum (Boulenger, 1887) from forested areas in the Knysna region. Although not sister species, the two are in the same clade and probably diverged through vicariance of the forest. Two other populations are from fynbos habitat in adjacent mountain ranges (Tsitsikamma/Langkloof/Kouga mountains and Baviaanskloof Mountains) and are also morphologically similar, but genetically divergent at the species level. These two species are not sister taxa and are not in the same clade yet have a virtually identical phenotype presumably as the result of convergent evolution for the fynbos habitat. Within the context of morphological taxonomy, these populations have been difficult to evaluate. However, when viewed in the context of ecological speciation, convergence and morphological conservatism, the species boundaries are apparent, allowing for them to be described as new taxa. [ABSTRACT FROM AUTHOR]

In the article, the authors explain how excessive bureaucratic red tape is adversely affecting biodiversity research in South Africa. Also cited are how strict legislation and regulations are restricting progress in research due to factors like permit and ethics clearance requirements, as well as the efforts by the government to reduce the requirements due to the negative effect of red tape on economic growth and small business enterprises.

A horizon scan was conducted to identify emerging and intensifying issues for biodiversity conservation in South Africa over the next 5–10 years. South African biodiversity experts submitted 63 issues of which ten were identified as priorities using the Delphi method. These priority issues were then plotted along axes of social agreement and scientific certainty, to ascertain whether issues might be "simple" (amenable to solutions from science alone), "complicated" (socially agreed upon but technically complicated), "complex" (scientifically challenging and significant levels of social disagreement) or "chaotic" (high social disagreement and highly scientifically challenging). Only three of the issues were likely to be resolved by improved science alone, while the remainder require engagement with social, economic and political factors. Fortunately, none of the issues were considered chaotic. Nevertheless, strategic communication, education and engagement with the populace and policy makers were considered vital for addressing emerging issues. [ABSTRACT FROM AUTHOR]

There are notable examples of repeated evolution of ecomorphs within groups of closely related species, these are typically viewed as remarkable cases of natural selection. In most cases, directional selection for certain phenotypic traits under specific (and differing) environmental conditions is implicated. Differing ecomorphological forms for closely related species (or for populations within a species) have been documented for several lineages of South African dwarf chameleons (Bradypodion), although this pattern is not ubiquitous across the genus. Within one species, Bradypodion pumilum, two ecomorphs have been observed, these differ in terms of morphology, performance, ecology and habitat, yet genetic differences (mtDNA) were not apparent, with shared haplotypes across the ecomorphs. We investigated whether more sensitive genetic markers (eight microsatellite loci) would show population level structure between ecomorphs, which could indicate lack of gene flow across the ecological (habitat) boundary. Our results suggest that the two ecomorphs are distinct at a population level, implying that gene flow is absent or reduced and that the two ecomorphs are on separate evolutionary trajectories. Given that mtDNA could not detect population structure, we infer that the ecological boundary between ecomorphs is relatively recent in evolutionary history. The two ecomorphs are distinctive in terms of their morphology, ecology, habitat and functional traits, these differences are likely driven and maintained by reproductive isolation across the habitat boundary. [ABSTRACT FROM AUTHOR]

Compared to the global average, extinction risk for mainland African reptiles, particularly for South Africa, appears to be relatively low. Despite this, African reptiles are under threat primarily due to habitat loss as a result of agriculture, resource extraction, and urbanisation, and these pressures are expected to increase into the future. South Africa's reptile fauna is relatively well-studied, allowing an investigation of whether threat status assessment limitations are driving the comparably low threat status for the country, a large component of Africa's reptile fauna (ca. 25% of mainland African reptiles are found in South Africa). Extinction risk of South African reptiles was assessed as of 2018 using IUCN criteria and we 'backcast' these assessments to infer extinction risk circa 1990. A Red List Index (RLI: a measure of the extinction risk for a group of species) for 1990 and 2018 was estimated, and the protection level afforded to South African reptiles was investigated by intersecting reptile distributions with the network of protected areas. Finally, a coarse estimate of extinction rate was made. Level of extinction risk for South African reptiles (ca. 5.4%) is lower than the global average, and most currently threatened species would have already been at risk by 1990. The RLI was slightly lower for 2018 than for 1990, and the decrease was more prominent for endemic reptiles than for all reptiles combined. Most South African reptiles fall into the Well Protected category, implying that the protected area network has substantial conservation impact. However, many threatened reptile species are Poorly Protected or Not Protected. The current extent of the protected area network therefore, does not adequately mitigate extinction risk for reptiles. Furthermore, the protected area expansion plan for South Africa would not capture any additional threatened species within its boundaries. Despite the lower level of extinction risk indicated by IUCN assessments, it would be premature to assume that South African reptiles are faring better than reptiles globally based only on this one measure. Notably, two South African reptiles are Critically Endangered and theses are not found in protected areas, two others are already classified as Extinct, and rough estimates of extinction rates are similar to values estimated for other vertebrates. By considering additional metrics that are directly guided by our in-depth knowledge of the species, their distributions and the threats, we demonstrate that South African reptiles are under pressure and that risk of extinction is tangible for several species. [ABSTRACT FROM AUTHOR]

Although multiple paternity and sperm storage are common in squamates, neither has been conclusively demonstrated in the chameleons (Chamaeleonidae). To examine whether these traits are present in chameleons, the Cape Dwarf Chameleon (Bradypodion pumilum) was investigated. This viviparous species inhabits a temperate climate in southern Africa, has aseasonal breeding, and can produce multiple clutches annually. Given this reproductive schedule, we hypothesised that females may mate opportunistically and store sperm, and that single clutches may have multiple sires. To examine this, six females and their clutches were genotyped using microsatellite markers, and assessed for multiple paternity. In addition, 46 females were assessed for sperm storage structures and presence of sperm in the oviduct. Multiple paternity was found in all six clutches, based on the presence of multiple alleles at all loci that could not be assigned to the mother. No evidence of specialised sperm storage structures was found, but sperm was present in the lumen of the posterior oviduct in 74% of females. While sperm storage cannot be concluded with finality, it seems likely to occur, rather assuming that three out of four of the females in the sample had mated just prior to capture. Furthermore, two post-partum females retained sperm in the oviducts after the delivery of a clutch, but in the absence of additional copulation. Given that this species has aseasonal reproduction, if sperm is indeed stored long-term, this combination of traits would be advantageous given the lack of defined breeding season and presumably low rates of mate encounter. [ABSTRACT FROM AUTHOR]

The Cape Dwarf Chameleon,Bradypodion pumilum, is threatened by extensive habitat loss and transformation in the Western Cape Province of South Africa. As a result, the species exists as a collection of populations inhabiting an increasingly fragmented landscape within a critically endangered ecosystem. In this study we monitored microsatellite genetic variation in one of these populations ofB. pumilumacross a three-year period. From the results of a temporary site-vacancy of adult chameleons during the study, we anticipated a significant shift in microsatellite allele frequencies. Using data from eight highly polymorphic loci we detected differences in the allelic composition of chameleons inhabiting the study site between pre- and post-site-vacancy periods (AMOVARST= 0.017;P= 0.019). Results suggest that recolonisation by immigrant chameleons, from an adjacent vegetation fragment connected to the study site by corridors, caused the recorded shifts in allelic frequencies. Pairwise tests of year by year comparisons revealed significant shifts in allelic frequencies between years one and two and between one and three, but not between years two and three. Our findings highlight the susceptibility of small vertebrates to stochastic changes in the allelic composition of populations in a fragmented landscape, and can be useful for the development of biodiversity management in an increasingly fragmented habitat mosaic. [ABSTRACT FROM AUTHOR]

Traditional models of amphibian dispersal and gene flow point to low dispersal and high philopatry. In recent years, this traditional view has been challenged and it appears that no general model holds across taxa. Conservation of amphibians cannot be addressed on an over-arching scale, but must come on a case-by-case basis, especially for range-restricted species where information on gene flow and migration must be incorporated into conservation efforts. The only two members of the genus Capensibufo Grandison, 1980 (Anura: Bufonidae) are range restricted small bufonids, with distributions limited to montane areas in South Africa. Using a Bayesian analysis of two mitochondrial markers (16S and ND2), we examined the genetic patterns in Capensibufo rosei and Capensibufo tradouwi in order to understand both taxonomic and geographic boundaries. These species were not monophyletic, and demonstrate no clear taxonomic boundaries. Instead, the genus is extremely diverse genetically, with distinct lineages confined to isolated mountains that represent geographic boundaries. In addition, bioclimatic modelling using MAXENT and scenarios of climatic conditions at both the present and last glacial maximum suggest multiple bioclimatic and physical barriers to gene flow at present and in the past. We conclude that members of the genus have very low vagility, that current taxonomic boundaries are inadequate, and that strong geographic structuring has undoubtedly contributed to genetic diversity at the species level, rather than the population level. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100, 822–834. [ABSTRACT FROM AUTHOR]

Abstract: The Cape Floristic Region (CFR) is well-known for its floral diversity, yet also contains a rich herpetofauna with >180 species, 28% of which are endemic. Recent studies conducted on CFR lizards indicated that phylogeographic patterns show some congruency, and that the western CFR shows higher overall diversity in the form of population and/or clade turnover. Here, we combine mitochondrial sequence data from two published (Bradypodion spp. and Agama atra) and one new dataset (Pedioplanis burchelli) to investigate whether geographic patterns of genetic diversity could be influenced by predicted climatic changes. We utilised Bayesian methodology and spatial genetic landscapes to establish broad-scale patterns and show that the western CFR is a contact zone for several clades in all three taxa, supporting the hypothesis of phylogeographic congruence. Current levels of gene flow are virtually zero between the western and eastern CFR. In the east, gene flow between populations is negligible at present but was probably stronger in the past given the present lack of strong genetic structure. Bioclimatic modelling predicted that climatically suitable areas within the CFR will decline for Bradypodion spp. and P. burchelli, with areas high in clade turnover loosing more climatically suitable areas than areas with low clade turnover. The models also predict that loss of climatic suitability may result in highly fragmented and patchy distributions, resulting in a greater loss of connectivity. In contrast, A. atra does not show significant climatic suitability losses overall, although it may experience localised losses (and gains). This species is not predicted to loose suitability in areas of high clade turnover. Thus, the incorporation of genetic data into climatic models has extended our knowledge on the vulnerability of these species given the predicted threat of landscape change. [Copyright &y& Elsevier]

Local range expansions might either be the response of populations to climate or landscape change, or be caused directly by human intervention. In the latter case the expansion would be considered the first in the steps leading to a biological invasion. In species typically not the subject of human commerce, distinguishing the causes of local range expansions is problematic. Range dynamic theory provides a basis for doing so, and, when used to assess phylogeographical information, can be a powerful conservation biogeographical approach. Here we adopt this approach to resolve the controversial case of the recent range expansion of the painted reed frog ( Hyperolius marmoratus) in southern South Africa. Within the last decade, H. marmoratus has spread westward approximately 500 km from its historical range. This local range expansion could either represent human-mediated jump dispersal, or a response to landscape or climate change. To date, the latter has been assumed, although not universally. Using a phylogeographic approach to investigate these competing hypotheses, a portion of the mitochondrial COI gene was sequenced for individuals from within the historical range ( n = 178), and four putatively introduced populations in dams ( n = 121). There was substantial geographical population structure within the historical range, and these populations were significantly different from the dam populations (ΦST = 0.817, P < 0.001). The presence of one or a few dissimilar haplotypes in the dams suggests that introductions are from a number of different sources. This, in conjunction with new survey data, supports the hypothesis that recent establishment of these populations is the result of human-mediated jump dispersal. The impact of this range expansion on ecosystem functioning is unknown, but given the rapid spread of this species and its potential influence on ecosystems, safeguards should be put in place to control further introductions and to restrict the currently invasive populations. [ABSTRACT FROM AUTHOR]

The taxonomic relationships within the dwarf chameleons (Bradypodion) of southern Africa have long been controversial. Although informal phenotypic groups have been suggested, the evolutionary relationships among the 15 recognised species in southern Africa have not been previously investigated. To investigate the relationships among species within this genus, fragments of two mitochondrial genes (16S ribosomal RNA and ND2) were sequenced and analysed using maximum parsimony, maximum likelihood and Bayesian inference. All analyses showed congruent topologies, revealing at least 5 well-supported clades distributed across distinct geographic regions. The mtDNA gene tree indicated that in many instances, geographic location has played a role in shaping the evolution of this group, and that the previously suggested phenotypic groupings do not adequately reflect evolutionary relationships. Furthermore, it appears that some of the currently recognised species (described on morphology) are polyphyletic for mitochondrial sequences, most notably those occurring in the isolated forest patches of north-eastern South Africa, near the Drakensberg Escarpment. [Copyright &y& Elsevier]

The article discusses the high genetic diversity and isolation of dwarf mountain toads, under the genus Capensibufo Grandison, found in South Africa. Information is given on the taxonomic and geographic boundaries of the species and bioclimatic and physical barriers to gene flow. It notes that the genus showed a high genetic diversity with distinct lineages confined to isolated mountains, as well as very low vagility and inadequate taxonomic boundaries.

The article focuses on a study which investigated the effects of predicated climate change on the endemic South African dwarf chameleons, Bradypodion. To predict the suitable climatic habitat for most the chameleon species and for their phylogenetic clades, a niche-based modelling technique was employed. The Intergovernmental Panel on Climate Change (IPCC) climate change scenarios were also used in the study. All models showed responses to predicted climate change but the degree and extent of these responses were individualistic. Most of them responded with a contraction in predicated climatic suitability while some registered an expansion or a shift.

Recent biological surveys of ancient inselbergs in southern Malawi and northern Mozambique have led to the discovery and description of many species new to science, and overlapping centres of endemism across multiple taxa. Combining these endemic taxa with data on geology and climate, we propose the 'South East Africa Montane Archipelago' (SEAMA) as a distinct ecoregion of global biological importance. The ecoregion encompasses 30 granitic inselbergs reaching > 1000 m above sea level, hosting the largest (Mt Mabu) and smallest (Mt Lico) mid-elevation rainforests in southern Africa, as well as biologically unique montane grasslands. Endemic taxa include 127 plants, 45 vertebrates (amphibians, reptiles, birds, mammals) and 45 invertebrate species (butterflies, freshwater crabs), and two endemic genera of plants and reptiles. Existing dated phylogenies of endemic animal lineages suggests this endemism arose from divergence events coinciding with repeated isolation of these mountains from the pan-African forests, together with the mountains' great age and relative climatic stability. Since 2000, the SEAMA has lost 18% of its primary humid forest cover (up to 43% in some sites)-one of the highest deforestation rates in Africa. Urgently rectifying this situation, while addressing the resource needs of local communities, is a global priority for biodiversity conservation., (© 2024. The Author(s).)

Age-specific survival and reproduction are closely linked to fitness and therefore subject to strong selection that typically limits their variability within species. Furthermore, adult survival rate in vertebrate populations is typically less variable over time than other life-history traits, such as fecundity or recruitment. Hence, adult survival is often conserved within a population over time, compared to the variation in survival found across taxa. In stark contrast to this general pattern, we report evidence of extreme short-term variation of adult survival in Rose's mountain toadlet (Capensibufo rosei), which is apparently climate induced. Over 7 years, annual survival rate varied between 0.04 and 0.92, and 94% of this variation was explained by variation in breeding-season rainfall. Preliminary results suggest that this variation reflects adaptive life-history plasticity to a degree thus far unrecorded for any vertebrate, rather than direct rainfall-induced mortality. In wet years, these toads appeared to achieve increased reproduction at the expense of their own survival, whereas in dry years, their survival increased at the expense of reproduction. Such environmentally induced plasticity may reflect a diversity of life-history strategies not previously appreciated among vertebrates.

The evolutionary history of chameleons has been predominantly studied through phylogenetic approaches as the fossil register of chameleons is limited and fragmented. The poor state of preservation of these fossils has moreover led to the origin of numerous nomen dubia, and the identification of many chameleon fossils remains uncertain. We here examine chameleon fossil fragments from the Early Pliocene Varswater formation, exposed at the locality of Langebaanweg "E" Quarry along the southwestern coast of South Africa. Our aim was to explore whether these fossil fragments could be assigned to extant genera. To do so, we used geometric morphometric approaches based on microtomographic imaging of extant chameleons as well as the fossil fragments themselves. Our study suggests that the fossils from this deposit most likely represent at least two different forms that may belong to different genera. Most fragments are phenotypically dissimilar from the South African endemic genus Bradypodion and are more similar to other chameleon genera such as Trioceros or Kinyongia. However, close phenetic similarities between some of the fragments and the Seychelles endemic Archaius or the Madagascan genus Furcifer suggest that some of these fragments may not contain enough genus-specific information to allow correct identification. Other fragments such as the parietal fragments appear to contain more genus-specific information, however. Although our data suggest that the fossil diversity of chameleons in South Africa was potentially greater than it is today, this remains to be verified based on other and more complete fragments.

Phenotypic performance in different environments is central to understanding the evolutionary and ecological processes that drive adaptive divergence and, ultimately, speciation. Because habitat structure can affect an animal's foraging behaviour, anti-predator defences, and communication behaviour, it can influence both natural and sexual selection pressures. These selective pressures, in turn, act upon morphological traits to maximize an animal's performance. For performance traits involved in both social and ecological activities, such as bite force, natural and sexual selection often interact in complex ways, providing an opportunity to understand the adaptive significance of morphological variation with respect to habitat. Dwarf chameleons within the Bradypodion melanocephalum-Bradypodion thamnobates species complex have multiple phenotypic forms, each with a specific head morphology that could reflect its use of either open- or closed-canopy habitats. To determine whether these morphological differences represent adaptations to their habitats, we tested for differences in both absolute and relative bite performance. Only absolute differences were found between forms, with the closed-canopy forms biting harder than their open-canopy counterparts. In contrast, sexual dimorphism was found for both absolute and relative bite force, but the relative differences were limited to the closed-canopy forms. These results indicate that both natural and sexual selection are acting within both habitat types, but to varying degrees. Sexual selection seems to be the predominant force within the closed-canopy habitats, which are more protected from aerial predators, enabling chameleons to invest more in ornamentation for communication. In contrast, natural selection is likely to be the predominant force in the open-canopy habitats, inhibiting the development of conspicuous secondary sexual characteristics and, ultimately, enforcing their overall diminutive body size and constraining performance.

Temperature is an extrinsic factor that influences reptile behavior because of its impact on reptile physiology. Understanding the impact of temperature on performance traits is important as it may affect the ecology and fitness of ectothermic animals such as reptiles. Here, we examined the temperature dependence of performance in two species of South African dwarf chameleon (Bradypodion): one adapted to a semi-arid environment and one to a mesic environment. Ecologically relevant performance traits were tested at different temperatures to evaluate their thermal dependence, and temperature-performance breadths for 80% and 90% of each performance trait were calculated. Our results show distinct differences in the thermal dependence of speed- versus force-related performance traits. Moreover, our results show that the semi-arid species is better adapted to higher temperatures and as such has a better chance of coping with the predicted increases in environmental temperature. The mesic area-adapted species seems to be more sensitive to an increase in temperature and could therefore potentially be threatened by the predicted future climate change. However, further studies investigating the potential for acclimation in chameleons are needed to better understand how animals may respond to future climate change.

Chameleons are highly specialized and mostly arboreal lizards characterized by a suite of derived characters. The grasping feet and tail are thought to be related to the arboreal lifestyle of chameleons, yet specializations for grasping are thought to exhibit a trade-off with running ability. Indeed, previous studies have demonstrated a trade-off between running and clinging performance, with faster species being poorer clingers. Here we investigate the presence of trade-offs by measuring running and grasping performance in four species of chameleon belonging to two different clades (Chamaeleo and Bradypodion). Within each clade we selected a largely terrestrial species and a more arboreal species to test whether morphology and performance are related to habitat use. Our results show that habitat drives the evolution of morphology and performance but that some of these effects are specific to each clade. Terrestrial species in both clades show poorer grasping performance than more arboreal species and have smaller hands. Moreover, hand size best predicts gripping performance, suggesting that habitat use drives the evolution of hand morphology through its effects on performance. Arboreal species also had longer tails and better tail gripping performance. No differences in sprint speed were observed between the two Chamaeleo species. Within Bradypodion, differences in sprint speed were significant after correcting for body size, yet the arboreal species were both better sprinters and had greater clinging strength. These results suggest that previously documented trade-offs may have been caused by differences between clades (i.e. a phylogenetic effect) rather than by design conflicts between running and gripping per se.

Molecular phylogenetic analyses of southern African lacertid lizards (Eremiadini) using mitochondrial and nuclear markers revealed two examples of generic assignments incompatible with monophyletic clades. Australolacerta Arnold 1989, a genus endemic to South Africa and to which two isolated species have been referred, is paraphyletic at the generic level. In addition, the species Ichnotropis squamulosa Peters 1854 was found to be embedded within the genus Meroles. To resolve the paraphyly in Australolacerta we erect a new genus, Vhembelacerta Edwards, Branch, Herrel, Vanhooydonck, Measey, & Tolley, gen. nov., to accommodate Lacerta rupicola FitzSimons 1933. To maintain a monophyletic Ichnotropis Peters 1854, Ichnotropis squamulosa Peters 1854 is transferred to Meroles Gray 1838, now named Meroles squamulosus comb. nov. Where necessary the genera affected by these actions are re-characterized.

Convergent evolution can explain similarity in morphology between species, due to selection on a fitness-enhancing phenotype in response to local environmental conditions. As selective pressures on body morphology may be strong, these have confounded our understanding of the evolutionary relationships between species. Within the speciose African radiation of lacertid lizards (Eremiadini), some species occupy a narrow habitat range (e.g. open habitat, cluttered habitat, strictly rupicolous, or strictly psammophilic), which may exert strong selective pressures on lizard body morphology. Here we show that the overall body plan is unrelated to shared ancestry in the African radiation of Eremiadini, but is instead coupled to habitat use. Comprehensive Bayesian and likelihood phylogenies using multiple representatives from all genera (2 nuclear, 2 mitochondrial markers) show that morphologically convergent species thought to represent sister taxa within the same genus are distantly related evolutionary lineages (Ichnotropis squamulosa and Ichnotropis spp.; Australolacerta rupicola and A. australis). Hierarchical clustering and multivariate analysis of morphological characters suggest that body, and head, width and height (stockiness), all of which are ecologically relevant with respect to movement through habitat, are similar between the genetically distant species. Our data show that convergence in morphology, due to adaptation to similar environments, has confounded the assignment of species leading to misidentification of the taxonomic position of I. squamulosa and the Australolacerta species.

The southern African landscape appears to have experienced frequent shifts in vegetation associated with climatic change through the mid-Miocene and Plio-Pleistocene. One group whose historical biogeography may have been affected by these fluctuations are the dwarf chameleons (Bradypodion), due to their associations with distinct vegetation types. Thus, this group provides an opportunity to investigate historical biogeography in light of climatic fluctuations. A total of 138 dwarf chameleons from the Cape Floristic Region of South Africa were sequenced for two mitochondrial genes (ND2 and 16S), and resulting phylogenetic analyses showed two well-supported clades that are distributed allopatrically. Within clades, diversity among some lineages was low, and haplotype networks showed patterns of reticulate evolution and incomplete lineage sorting, suggesting relatively recent origins for some of these lineages. A dispersal-vicariance analysis and a relaxed Bayesian clock suggest that vicariance between the two main clades occurred in the mid-Miocene, and that both dispersal and vicariance have played a role in shaping present-day distributions. These analyses also suggest that the most recent series of lineage diversification events probably occurred within the last 3-6 million years. This suggests that the origins of many present-day lineages were founded in the Plio-Pleistocene, a time period that corresponds to the reduction of forests in the region and the establishment of the fynbos biome.

The acute Hypoxic Ventilatory Response (HVR) is an important component of human hypoxia tolerance, hence presumably physiological adaptation to high altitude. We measured the isocapnic HVR (L min(-1) %(-1)) in two genetically divergent low altitude southern African populations. The HVR does not differ between African Xhosas (X) and Caucasians (C) (X:-0.34+/-0.36; C:-0.42+/-0.33; P > 0.34), but breathing patterns do. Among all Xhosa subjects, size-independent tidal volume was smaller (X: 0.75+/-0.20; C: 1.11+/-0.32 L; P < 0.01), breathing frequency higher (X: 22.2+/-5.7; C: 14.3+/-4.2 breaths min(-1); P < 0.01) and hypoxic oxygen saturation lower than among Caucasians (X: 78.4+/-4.7%; C: 81.7+/-4.7%; P < 0.05). The results remained significant if subjects from Xhosa and Caucasian groups were matched for gender, body mass index and menstrual cycle phase in the case of females. The latter also employed distinct breathing patterns between populations in normoxia. High repeatability (intra-class correlation coefficient) of the HVR in both populations (0.77-0.87) demonstrates that one of the prerequisites for natural selection, consistent between-individual variation, is met. Finally, we explore possible relationships between inter-population genetic distances and HVR differences among Xhosa, European, Aymara Amerindians, Tibetan and Chinese populations. Inter-population differences in the HVR are not attributable to genetic distance (Mantel Z-test, P = 0.59). The results of this study add novel support for the hypothesis that differences in the HVR, should they be found between other human populations, may reflect adaptation to hypoxia rather than genetic divergence through time.