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We estimated the concentration of Chlorophyll-a (Chl-a) along with physical and biological factors including sea surface temperature (SST), wind speed and concentration of nitrate and phosphate in the Western, Central and Eastern Equatorial Indian Oceans (WEIO, CEIO and EEIO) using data from the Copernicus Marine Service and ERA-5 for the years 1994 to 2019. Our results show that along with the concentration of Chl-a, nitrate and phosphate have decreased, and sea surface temperature has increased in the EEIO. Due to coastal upwelling off the coast of Somalia and offshore Ekman transport throughout the summer, the southwest monsoon caused a significant increase in concentrations of Chl-a, nitrate, phosphate and wind speed in WEIO during June-July-August-September (JJAS) and October-November-December (OND). SST decreased at this time and deeper water interacted with surface water, increasing biological production. In EEIO, the upwelling zone is primarily maintained by wind-induced divergence throughout the year, whereas stratification in winter prevented surface Chl-a increase. High wind speed and low SST led to increased productivity in WEIO. Comparison of EEIO with WEIO and CEIO demonstrates low levels of Chl-a, phosphate and nitrate. The trends signify that these oceanic zones are highly vulnerable to developing into ecological deserts in the near future. [ABSTRACT FROM AUTHOR]