1. Analysis of Anti-diarrhoeal Genes and Immune Factors in Local Pig Breeds in Shanghai.
- Author
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ZHOU Jinyong, SUN Lingwei, ZHANG Keqin, DAI Jianjun, ZHANG Defu, WANG Zhenguo, ZHU Xing, and WU Caifeng
- Subjects
RESTRICTION fragment length polymorphisms ,SHEEP breeds ,TUMOR necrosis factors ,BREEDING ,SWINE ,SINGLE nucleotide polymorphisms - Abstract
In order to identify effective genetic markers for transporter-associated with antigen processing 1 (TAP1), α (1, 2) fucosyltransferase 1 (FUT1), natural resistance-associated macrophage protein 1 (NRAMP1), mucin 4 (MUC4) and mucin 13 (MUC13) genes in Shanghai local pig breeds, including Shanghai White pig, Fengjing pig and Shawutou pig, and provide a reference for the characterization of Shanghai local pig breeds, polymerase chain reaction restriction fragment length polymorphism (PCR-RFLR) and sequence sequencing were applied to analyze the polymorphisms of the above genes, combined with some immune-related factors to explore the effects on immunity of the 3 Shanghai local pig breeds. The results showed that TAP1 and MUC4 genes had anti-diarrheal genotype GG in all 3 pig breeds, while anti-diarrheal genotype GG of MUC13 gene was detected only in Fengjing pig and Shawutou pig, and anti-diarrheal genotype AA of FUT1 and NRAMP1 genes were not detected in any of the 3 pig breeds. TAP1 gene was in moderate polymorphism in Shanghai White pig, Fengjing pig and Shawutou pig, the MUC4 gene of Shanghai White pig was in low polymorphism, the MUC4 gene of Fengjing pig and Shawutou pig was in moderate polymorphism, and the MUC13 gene of Shanghai White pig was in moderate polymorphism, among which the TAP1 gene of Shanghai White pig and Shawutou pig did not satisfy Hardy-Weinberg equilibrium, and the MUC4 gene of Fengjing pig did not satisfy Hardy-Weinberg equilibrium. The interleukin 12 (IL-12) level of MUC13 gene type AA was significantly higher than that of type AG in Shanghai White pig, the tumor necrosis factor α (TNF-α) index of TAP1 gene type AA was significantly higher than that of type GG and AG in Fengjing pig, and the IL-12 index of TAP1 gene type AG was significantly higher than that of type GG in Shawutou pig. Above results had some guiding significance for anti-diarrheal breeding and molecular selection of Shanghai White pig, Fengjing pig and Shawutou pig, and also laid the foundation for future anti-diarrheal breeding work of each local pig breeds in Shanghai. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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