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Background: Trombiculid mites are globally distributed, highly diverse arachnids that largely lack molecular resources such as whole mitogenomes for the elucidation of taxonomic relationships. Trombiculid larvae (chiggers) parasitise vertebrates and can transmit bacteria (Orientia spp.) responsible for scrub typhus, a zoonotic febrile illness. Orientia tsutsugamushi causes most cases of scrub typhus and is endemic to the Asia-Pacific Region, where it is transmitted by Leptotrombidium spp. chiggers. However, in Dubai, Candidatus Orientia chuto was isolated from a case of scrub typhus and is also known to circulate among rodents in Saudi Arabia and Kenya, although its vectors remain poorly defined. In addition to Orientia, chiggers are often infected with other potential pathogens or arthropod-specific endosymbionts, but their significance for trombiculid biology and public health is unclear. Results: Ten chigger species were collected from rodents in southwestern Saudi Arabia. Chiggers were pooled according to species and screened for Orientia DNA by PCR. Two species (Microtrombicula muhaylensis and Pentidionis agamae) produced positive results for the htrA gene, although Ca. Orientia chuto DNA was confirmed by Sanger sequencing only in P. agamae. Metagenomic sequencing of three pools of P. agamae provided evidence for two other bacterial associates: a spirochaete and a Wolbachia symbiont. Phylogenetic analysis of 16S rRNA and multi-locus sequence typing genes placed the spirochaete in a clade of micromammal-associated Borrelia spp. that are widely-distributed globally with no known vector. For the Wolbachia symbiont, a genome assembly was obtained that allowed phylogenetic localisation in a novel, divergent clade. Cytochrome c oxidase I (COI) barcodes for Saudi Arabian chiggers enabled comparisons with global chigger diversity, revealing several cases of discordance with classical taxonomy. Complete mitogenome assemblies were obtained for the three P. agamae pools and almost 50 SNPs were identified, despite a common geographic origin. Conclusions: P. agamae was identified as a potential vector of Ca. Orientia chuto on the Arabian Peninsula. The detection of an unusual Borrelia sp. and a divergent Wolbachia symbiont in P. agamae indicated links with chigger microbiomes in other parts of the world, while COI barcoding and mitogenomic analyses greatly extended our understanding of inter- and intraspecific relationships in trombiculid mites. [ABSTRACT FROM AUTHOR]

Scrub typhus is a zoonosis caused by 3 species of Orientia bacteria, including Candidatus Orientia chuto. This species is known only from a human case in Dubai and infections in wildlife in Kenya. We report molecular detection of Candidatus O. chuto in 2 wild rodent species from Saudi Arabia. [ABSTRACT FROM AUTHOR]

Background: The ixodid tick genera Rhipicephalus and Haemaphysalis contain several species of medical and/or veterinary importance, but their diversity in some regions of the world remains under-explored. For instance, very few modern studies have been performed on the taxonomy of these genera on the Arabian Peninsula. Methods: In this study, we trapped small mammals in the 'Asir Mountains of south-western Saudi Arabia and collected tick specimens for morphological examination and molecular barcoding, targeting three mitochondrial loci: cox1, 16S rRNA and 12S rRNA. Results: We obtained a total of 733 ticks (608 Haemaphysalis spp. and 125 Rhipicephalus spp.) from 75 small mammal hosts belonging to six species. All tick specimens were immature except for nine adults recovered from a hedgehog (Paraechinus aethiopicus). Morphologically, the Rhipicephalus ticks resembled R. camicasi, but the Haemaphysalis ticks showed differences in palp morphology compared with species previously described from Saudi Arabia. Phylogenetic analysis and automatic barcode gap discovery identified a novel clade of Rhipicephalus sp. representing most of the nymphs. This was most closely related to R. leporis, R. guilhoni and R. linnaei. The adult ticks and a small proportion of nymphs clustered with R. camicasi sequences from a previous study. Finally, the Haemaphysalis nymphs formed two distinct clades that were clearly separated from all reference sequences but closest to some African species. Conclusions: This apparent high level of tick diversity observed in a single study site of only ~ 170 km2, on a relatively small number of hosts, highlights the potential for the discovery of new tick species on the Arabian Peninsula. [ABSTRACT FROM AUTHOR]

In this study, we conducted molecular detection and characterization of piroplasms that infect the Ethiopian or desert hedgehogs (Paraechinus aethiopicus) in Saudi Arabia. Blood samples from 112 (68 males and 44 females) desert hedgehogs from Unaizah, Central Saudi Arabia were screened for Theileria/Babesia DNA using the polymerase chain reaction (PCR) employing specific primers amplifying the partial 18S small subunit rRNA gene. Theileria DNA was detected in 51 samples (45·5%), giving a prevalence of 45·5%. Theileria DNA was found in 33 (48·5%) males and 18 (40·9%) females, and there was no significant difference (P > 0·05) in the prevalence between males and females. Similarly, there was no significant difference (P > 0·05) in the prevalence between juveniles (40%) and adults (46·7%). There was a significant difference in the prevalence of Theileria in hedgehogs collected from May to September and the period from October to April (P = 0·003). Four haplotypes of Theileria sp. in hedgehogs were detected and designated as H1–H4. H1 was the predominant haplotype and found in 80·8% of the positive individuals. Partial sequences of the 18S rRNA of Theileria sp. from hedgehogs grouped with Theileria spp. that are benign. This study is the first report of the occurrence of Theileria spp. in Saudi Arabian desert hedgehogs. [ABSTRACT FROM AUTHOR]

A novel species of coccidia, resembling a member of the genus Eimeria, was found in bats, Scotophilus leucogaster, collected in southern Saudi Arabia has been described on the basis of unsporulated oocysts and DNA sequencing of the Internal Transcribed Spacer 1 (ITS1) and partial 18S rDNA regions. Unsporulated oocysts of this form are ovoidal to spheroidal and had a 2-layered wall, 1.5–2.0 (1.9 ± 0.2); the outer layer was light blue with striations, and thicker than the inner, darker layer. No micropyle was present. Unsporulated oocysts (N = 150) measured 27.2 × 22.1 (25–30 × 20–25), length width ratio, 1.2 (1.1–1.4). There was no evidence of an oocyst residuum and/or polar granule. This parasite was detected in 2/7 (29%) S. leucogaster collected from southern Saudi Arabia. Oocysts incubated at 25 °C in 2.5% K2Cr2O7 did not sporulate after > 1 month. Unsporulated oocyst measurements were compared with other coccidian parasites of bats that discharge oocysts in their feces. Sequences of the ITS1 and the 18S rDNA regions obtained from the unsporulated oocysts grouped this coccidium from S. leucogaster with eimerian species from various rodent and squirrel species. It is critical that future investigators obtain fully sporulated oocysts of this coccidium for full description of the parasite recovered in our study so it can be correctly assigned to genus and given an accurate binomial. [ABSTRACT FROM AUTHOR]

This study aimed to assess the seasonal reproductive strategy occurring in the male Lesser Egyptian jerboa (Jaculus jaculus) and determine which environmental cues are responsible for initiating reproductive recrudescence. Body mass, morphometry of the reproductive tract, the histology of the testes and the circulating testosterone concentrations in wild male J. jaculus, from central Saudi Arabia, were studied over 12 consecutive months. Furthermore, sixteen additional males were collected and subsequently placed on either a short‐day (SD) or a long‐day (LD) light schedule under controlled laboratory conditions. Using these male reproductive parameters, we investigated the potential proximate environmental cues that may trigger the onset of reproduction. Unexpectedly, males were reproductively active during three out of the four seasons, namely autumn, winter and spring possibly due to the rainfall that fell at an unprecedented frequency and quantity during this time. However, we revealed the importance of other environmental triggers, namely photoperiod and ambient temperature, on the control of male reproduction in J. jaculus. Decreasing photoperiod (SD) and ambient temperature were observed to activate the reproductive system by increasing plasma testosterone concentration. The male Lesser Egyptian jerboa was found to exhibit a marked seasonal reproduction controlled by the environmental cues of ambient temperature and photoperiod. [ABSTRACT FROM AUTHOR]

The Middle East Respiratory Syndrome-Coronavirus (MERS-CoV) is an endemic virus in dromedaries. Annually, Saudi Arabia imports thousands of camels from the Horn of Africa, yet the epidemiology of MERS-CoV in these animals is largely unknown. Here, MERS-CoV prevalence was compared in imported African camels and their local counterparts. A total of 1399 paired sera and nasal swabs were collected from camels between 2016 and 2018. Imported animals from Sudan (n = 829) and Djibouti (n = 328) were sampled on incoming ships at Jeddah Islamic seaport before unloading, and local camels were sampled from Jeddah (n = 242). Samples were screened for neutralizing antibodies (nAbs) and MERS-CoV viral RNA. The overall seroprevalence was 92.7% and RNA detection rate was 17.2%. Imported camels had higher seroprevalence compared to resident herds (93.8% vs 87.6%, p <0.01) in contrast to RNA detection (13.3% vs 35.5%, p <0.0001). Seroprevalence significantly increased with age (p<0.0001) and viral RNA detection rate was ~2-folds higher in camels <2-year-old compared to older animals. RNA detection was higher in males verses females (24.3% vs 12.6%, p<0.0001) but seroprevalence was similar. Concurrent positivity for viral RNA and nAbs was found in >87% of the RNA positive animals, increased with age and was sex-dependent. Importantly, reduced viral RNA load was positively correlated with nAb titers. Our data confirm the widespread of MERS-CoV in imported and domestic camels in Saudi Arabia and highlight the need for continuous active surveillance and better prevention measures. Further studies are also warranted to understand camels correlates of protection for proper vaccine development. [ABSTRACT FROM AUTHOR]

The present study was undertaken to confirm the genetic identity of Clostridium perfringens isolates from domestic livestock in Saudi Arabia and to characterize the genes encoding to alpha, beta, epsilon, and iota (α-, β-, ε-, and ι-) toxins. C. perfringens were confirmed in 104 out of 136 isolates on multiplex polymerase chain reaction using specific primers amplifying genes related to toxins produced by C. perfringens. Genes encoding α-toxins were detected in 104 samples. Of the isolates, 80.8% were diagnosed as type A, 15.4% as type D, 2.9% as type C, and 0.96% as type B. None of the isolates has genes encoding iota (ι-) toxin. All isolates investigated yielded enterotoxin (cpe) products and none yielded β2 (cpb2-toxin) or NetB products. PLC gene sequences encoding α-toxin showed >96.7% similarity. Isolates which had α-toxins as well as enterotoxin (cpe) are regarded as type F. Phylogenetic analysis using maximum likelihood analysis yielded two clades, and the majority of the isolates were in one group while only two isolates clustered on the second clade. Within the Kingdom of Saudi Arabia strains, 54 variable positions and 23 polymorphic amino acids were noticed. Isolates with ε- and β-toxins were variable and were found to be close to those published for C. perfringens. ETX gene sequences encoding ε-toxins were found to be related to CPE sequences. [ABSTRACT FROM AUTHOR]

A collection of chigger mites from three species of rodents in the 'Asir Region of Saudi Arabia resulted in the finding of 19 species. Four new species are described: Schoutedenichia asirensissp. nov.,Schoutedenichia saudisp. nov.,Microtrombicula microscutasp. nov., and Microtrombicula muhaylensissp. nov. Fifteen species—Gahrliepia lawrenceiJadin and Vercammen-Grandjean, 1952, Schoengastiella wansoni Wolfs and Vercammen-Grandjean, Walchia parvula Schluger, Ascoschoengastia browni Taufflieb, Mouchet and Courtois, Helenicula lukshumiae Nadchatram and Traub, Schoutedenichia thracica Kolebinova, Schoutedenichia zarudnyi Kudryashova, Ericotrombidium caucasicum (Schluger), Ericotrombidium galliardi (Vercammen-Grandjean and Taufflieb), Ericotrombidium kazeruni (Kudryashova), Microtrombicula centropi (Vercammen-Grandjean), Microtrombicula hoogstraali (Radford), Microtrombicula hyracis (Vercammen-Grandjean), Microtrombicula traubi (Muljarskaja and Verdieva), and Pentidionis agamae (André)—are for the first time recorded in Saudi Arabia and on new host species. Six of them are for the first time recorded outside their type localities and five were only known previously from the African continent. [ABSTRACT FROM AUTHOR]

Bats are implicated as natural reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, Ebola, Marburg, Nipah, Hendra, Rabies and other lyssaviruses. Accordingly, many One Health surveillance and viral discovery programs have focused on bats. In this report we present viral metagenomic data from bats collected in the Kingdom of Saudi Arabia [KSA]. Unbiased high throughput sequencing of fecal samples from 72 bat individuals comprising four species; lesser mouse-tailed bat (Rhinopoma hardwickii), Egyptian tomb bat (Taphozous perforatus), straw-colored fruit bat (Eidolon helvum), and Egyptian fruit bat (Rousettus aegyptiacus) revealed molecular evidence of a diverse set of viral families: Picornaviridae (hepatovirus, teschovirus, parechovirus), Reoviridae (rotavirus), Polyomaviridae (polyomavirus), Papillomaviridae (papillomavirus), Astroviridae (astrovirus), Caliciviridae (sapovirus), Coronaviridae (coronavirus), Adenoviridae (adenovirus), Paramyxoviridae (paramyxovirus), and unassigned mononegavirales (chuvirus). Additionally, we discovered a bastro-like virus (Middle East Hepe-Astrovirus), with a genomic organization similar to Hepeviridae. However, since it shared homology with Hepeviridae and Astroviridae at ORF1 and in ORF2, respectively, the newly discovered Hepe-Astrovirus may represent a phylogenetic bridge between Hepeviridae and Astroviridae. [ABSTRACT FROM AUTHOR]

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We set out to test whether the Ethiopian hedgehog, Paraechinus aethiopicus is a seasonal or aseasonal breeder and assess which environmental cues bring about both reproductive recrudescence and its subsequent regression. In this study, the body mass, morphometry of the reproductive tract the histology of the reproductive organs and the hormone concentrations of males and females were studied over 12 consecutive months in a wild population of the Ethiopian hedgehog from central Saudi Arabia. Using these data we investigated the potential proximate environmental cues that may trigger the onset of reproduction. Temperature is important for the initial activation of the males by bringing about an increase in testosterone concentration. In female hedgehogs the first rains trigger the onset of reproductive activation with ovulation. In turn increased temperature brings about the final activation of the males with increased testes size and seminiferous tubule diameter. Pregnancies were first recorded in early spring and summer coinciding with a rise in plasma progesterone concentration that peaked in spring. The Ethiopian hedgehog was found to exhibit marked seasonal reproduction. This study strengthens the findings that changes in rainfall and temperature in the Middle East are crucial cues for the onset of reproduction in small mammals. [ABSTRACT FROM AUTHOR]

The Arabian oryx, a moderately large mammal that inhabits a harsh desert environment, has been shown to exhibit seasonal variations in activity and inactivity patterns. Here we analyzed the continuous year-round activity patterns of twelve free-roaming Arabian oryx under natural conditions from two varying desert environments in Saudi Arabia using abdominally implanted activity meters. We simultaneously recorded weather parameters at both sites to determine whether environmental factors are responsible for temporal niche switching as well as the seasonal structuring and timing of this behavioural plasticity. Our results demonstrate that Arabian oryx undergo temporal niche switching of 24 h activity patterns at a seasonal level and exhibit distinct nocturnal/crepuscular activity during summer, diurnal activity during winter and intermittent patterns of behaviour during the transitional seasons of autumn and spring. In addition, the oryx exhibited inter- and intra-seasonal variations in the temporal budgeting of 24 h activity patterns. Strong relationships with both photoperiod and ambient temperatures were found and in some instances suggested that increasing ambient temperatures are a primary driving force behind seasonal shifts in activity patterns. These adaptive patterns may be dictated by the availability of food and water, which in turn are strongly influenced by seasonal climate variations. Overall, the adaptive responses of free-roaming Arabian oryx in such harsh and non-laboratorial conditions provide a framework for comparing wild populations as well as aiding conservation efforts. [ABSTRACT FROM AUTHOR]

The locomotory activity rhythms of Asian garden dormice, Eliomys melanurus from Saudi Arabia were investigated under controlled laboratory conditions. Animals were maintained under different lighting conditions for a period of two weeks each. Dormice exhibited predominantly nocturnal activity during the light/dark (LD) (mean % nocturnal activity: 95.5±0.9%) and dark/light (DL) (mean % nocturnal activity: 96.8±0.7%) light cycles. All animals expressed free-running rhythms of locomotor activity when subjected to constant darkness (mean τ: 24h06±0h09). Upon inversion of the LD cycle to DL, activity re-entrained to the new light cycle within 3 days. When the dark component of the day was lengthened to 8L:16D the active time increased significantly from 11h43±0h05 to 13h43±0h22. In contrast, when the dark component was shortened from 12L:12D to16L: 8D, the active time decreased significantly to 7h58±0h04. No difference was apparent in the locomotor activity at 20 and 30°C however, dormice became very inactive at 10°C. Overall, locomotor activity patterns of the Asian garden dormouse largely resemble those of other species of dormice. However, Asian garden dormice spent long periods of time inactive both during light and darkness, when exposed to an ambient temperature of 10°C, which may be related to the dramatic and sudden change in temperature. This period of inactivity may reflect a bout of torpor or the entering into a state of hibernation. [ABSTRACT FROM AUTHOR]

Abstract: The animal–environment interaction is complex, and the ability to temporally organise locomotor activity provides adaptive and survival advantages. We investigated daily and circadian locomotor activity patterns of two jird species from Arabia occurring in dramatically different environments to determine the environmental effect on activity. The King jird occurs in mountainous regions of Azir where climatic conditions are cool and wet, while the Libyan jird inhabits low-lying hot sandy deserts where temperatures exceed 45 °C during summer. Six King jirds and nine Libyan jirds were subjected to a 12L:12D light cycle, a period of constant darkness (DD) and an inversed 12D:12L light cycle. Five of six King jirds and all Libyan jirds showed entrainment of their activity to the light cycles, most animals exhibited nocturnal activity. All entraining jirds showed circadian rhythmicity, with the periods of the rhythms very close to 24 h. Entraining jirds inversed their activity patterns when the light cycle was inversed. The two jird species displayed comparable amounts of nocturnal activity in all light cycles presented. The King jird showed larger intraspecific variability than the Libyan jird, which may reflect more plasticity in its circadian clock, allowing it to adapt quicker to environmental changes. [Copyright &y& Elsevier]

We investigated the circadian activity rhythm in the little-studied Wagner's gerbil (Gerbillus dasyurus) from the Raydah Protected Area, southwestern Saudi Arabia. In order to assess whether these animals possess an endogenous rhythm of locomotor activity that entrains to the light:dark cycle, they were subjected to three distinct light cycles: an LD cycle (12 h light/12 h dark), a DD cycle (constant darkness) and a DL light cycle (an inverse of the LD light cycle). All eight individuals studied exhibited entrainment of their activity to the light cycles. Under LD, the total percentage of activity during the dark phase was 93.7 ± 1.8%. Activity was distributed throughout the night (mean peak activity 22:46 ± 0:14). All eight animals expressed distinct endogenous free-running rhythms of locomotor activity (mean r = 23:55 ± 0:36). During constant darkness, animals still displayed more activity during the subjective night (75.6 ± 0.4%). Under the DL light cycle, the total percentage of activity was 92.7 ± 1.8% during the dark phase. In conclusion, the daily locomotor activity rhythm of Wagner's gerbil is strongly entrained by the light:dark cycle with the most activity concentrated during the night and consequently this desert-dwelling mammal may thus be considered truly nocturnal. [ABSTRACT FROM AUTHOR]

The article discusses a study which examined gastrointestinal and external parasites of the Arabian Oryx and their level of infestation at the kingdom of Saudi Arabia. Eimeria saudiensis and Cryptosporidium sp. are the parasites identified from the study. The nematode species that have been recovered from the gastrointestinal tracts of the collected Arabian oryx are cited.

The article presents a study on the timing and patterns of molt of Kuhl's bat, Pipistrellus kuhlii from Unizah Province, Saudi Arabia. It discusses findings on the molting sequence among adult and young bats which usually occur following the breeding season, comparing the process between males and females. It explores the significance of having clear knowledge of the timing and patterns of molt when collecting hair samples for stable isotope analysis to determine places of origin of migrating bats.

Abstract: The gastrointestinal parasites and prevalence of infestation in the Arabian red fox Vulpes vulpes arabica Thomas, were investigated at the King Khalid Wildlife Research Centre (KKWRC) in Thumamah, Riyadh Province, Saudi Arabia. Faecal samples were collected from 58 wild caught foxes while under anaesthesia and examined for gastrointestinal parasites stages. Male and female foxes were infected with three major groups of parasites; cestodes, nematodes, protozoa as well as an acanthocephalan. Faecal analyses revealed that 22 foxes (37.9%) were infected with two different Isospora spp. and three (5.2%) with an undescribed Eimeria sp., 12 (20.7%). Nine individuals (15.5%) harboured hookworms, (Trichosomoides sp.), two (3.5%) were infected with Trichuris sp. (probably Trichuris vulpes) and one individual (1.7%) with Taenia sp. (probably Taenia hydatigena). Carcasses of five male and three female foxes were necropsied. Four of the necropsied carcasses yielded Ancylostoma caninum, two each harboured Pterygodermatitis affinis, T. vulpes and Macracanthorhynchus catalinus, in six foxes Joyeuxiella echinorynchoides was found. Five and four foxes were infected with T. hydatigena and Diplopylidium nölleri, respectively. The possible role of the Arabian red fox as an intercalary host essential for the life cycle of Trichosomoides sp., common to the Libyan jird, Meriones libycus, in particular and the importance of this species as a vector for zoonotic infections and in the spread of other parasites to wild and domestic animals in general is discussed. [Copyright &y& Elsevier]

The animal-environment interaction is complex, and the ability to temporally organise locomotor activity provides adaptive and survival advantages. The daily and circadian rhythms of locomotor activity in the Desert hedgehog, Paraechinus aethiopicus, from the central deserts of Saudi Arabia were investigated under controlled laboratory conditions. Twelve individuals were subjected to different light cycles of approximately 3 weeks each: light/dark (12:12LD) cycle; a period of constant darkness (DD); an inverse of the LD (12:12 DL) cycle; a short day cycle (8:16LD); and a long day cycle (16:8LD). All the animals exhibited entrainment of their activity to the LD and DL lighting regimes. Locomotor activity of the Desert hedgehog occurred mostly during the dark phases of the LD, DL, long day and short day cycles. All entraining hedgehogs showed daily rhythmicity, with the periods of the rhythms very close to 24 h. Entrained hedgehogs, additionally, inversed their activity patterns when the light cycle was inversed. The Desert hedgehog, therefore, can be described as genuinely nocturnal with an endogenous rhythm of locomotor activity. • Desert hedgehogs from Saudi Arabia entrain their locomotor activity to light cycles • They can be described as genuinely nocturnal with an endogenous rhythm. • They have free-running rhythms around 24 h • Harsh environmental condition decrease behavioural plasticity • Global warming may decrease behavioural plasticity in hedgehogs [ABSTRACT FROM AUTHOR]

In deserts where unpredictable rainfall arises and a large variation in temperature occurs, this poses severe energetic and water related constraints on reproduction in small mammals and makes the use of photoperiod as cue for reproduction unreliable. In the present study, the gonad morphometrics, gonadal histology and endocrine profiles of the Arabian spiny mouse ( Acomys dimidiatus ) were studied over 12 consecutive months in a field population from western Saudi Arabia in an attempt to assess the seasonality of reproduction and gain insights into the environmental cues that may trigger reproduction in this species. Although sperm was present throughout the year, most reproductive parameters exhibited a seasonal pattern with a minimum in winter in both sexes and pregnancies were observed from spring to autumn. Whereas testes volume, the number of corpora lutea and progesterone levels were correlated with temperature, all other reproductive parameters were correlated with rainfall. Thus, it appears that A. dimidiatus ceases to breed during winter and uses rainfall as an environmental cue to initiate reproduction in the study area. However, the species appears to have the ability to reproduce throughout the year, if favourable conditions arise. [ABSTRACT FROM AUTHOR]

The majority of human pathogens are zoonotic and rodents play an important role as reservoirs of many of these infectious agents. In the case of vector-borne pathogens, rodent reservoirs not only act as a source of infection for vectors but also serve as hosts for the vectors themselves, supporting their populations. Current data on rodent-ectoparasite relationships is limited in Saudi Arabia, however, this is needed to assess disease risk and the relative importance of different hosts for the maintenance of vector-borne pathogen cycles. In order to provide baseline data for the region that could be used to assess zoonotic disease risk, we collected and identified 771 ectoparasite specimens (ticks, fleas and mites) from 161 rodents at two wildlife research centres in Saudi Arabia and discuss our results in the context of possible zoonotic disease risk based on the hosts and vectors present. [ABSTRACT FROM AUTHOR]

There is little information pertaining to the reproductive biology of the Baluchistan gerbil ( Gerbillus nanus ) despite a broad distribution throughout the Middle East. In the current study, body mass, reproductive–tract morphometrics plus gonadal histology and endocrine profiles of males and females were studied over 12 consecutive months in a field population of Baluchistan gerbils from the western region of Saudi Arabia in an attempt to gain insights into a) the environmental zeitgeber ( s ) that correlate with reproduction as well as b) to assess if reproduction is seasonal or aseasonal in this species. With the exception of testosterone all male reproductive indicators varied seasonally and were lower during winter than the rest of the year and most increased with rainfall. In contrast, ovarian mass and volume as well as immature follicle counts showed no seasonal patterns and were independent of rainfall or temperature. First pregnancies were observed in late spring coinciding with the increased progesterone concentrations and peaked in summer. This was accompanied by seasonal peaks in the number of Graafian follicles and corpora lutea in females and these parameters were significantly correlated with temperature, but not rainfall In the Arabian Peninsula male, but not female Baluchistan gerbils show seasonal recrudescence and this appears to be correlated largely to rainfall. [ABSTRACT FROM AUTHOR]

Abstract Since 2012, MERS-CoV has caused up to 2220 cases and 790 deaths in 27 countries with Saudi Arabia being the most affected country with ~83.1% of the cases and ~38.8% local death rate. Current serological assays such as microneutralization (MN), plaque reduction neutralization, immunofluorescence, protein microarray or pseudoparticle neutralization assays rely on handling of live MERS-CoV in high containment laboratories or need for expensive and special equipment and reagents and highly trained personnel which represent a technical hurdle for most laboratories in resource-limited MERS-CoV endemic countries. Here, we developed, compared and evaluated three different indirect ELISAs based on MERS-CoV nucleocapsid protein (N), spike (S) ectodomain (amino acids 1–1297) and S1 subunit (amino acids 1–725) and compared them with MN assay. The developed ELISAs were evaluated using large number of confirmed seropositive (79 samples) and seronegative (274 samples) MERS-CoV human serum samples. Both rS1- and rS-ELISAs maintained high sensitivity and specificity (≥90%) across a wider range of OD values compared to rN-ELISA. Moreover, rS1- and rS-based ELISAs showed better agreement and correlation with MN assay in contrast to rN-ELISA. Collectively, our data demonstrate that rS1-ELISA and rS-ELISA are more reliable than rN-ELISA and represent a suitable choice for seroepidemiological testing and surveillance in MERS-CoV endemic regions. [ABSTRACT FROM AUTHOR]

This work represents the most extensive genetic study of the grey wolf (Canis lupus Linnaeus, 1758) in Arabia and the first considering genetic data from multiple locations within Saudi Arabia. Previous suggestion of the occurrence of two subspecies of wolves in Arabia is not supported by this study. The genetic evidence suggests that the wolves of Saudi Arabia are genetically variable and more closely related to the Eurasian wolf Canis lupus group (dog included) than to the Indian wolf C. l. pallipes . The genetic diversity observed for C. lupus in Saudi Arabia indicates that the subspecific status C. l. arabs should be retained for the Arabian wolf. What remains unclear is the degree to which genetic introgression from domestic dogs has influenced the composition and integrity of C. lupus in Saudi Arabia. [ABSTRACT FROM AUTHOR]

In arid regions, unpredictable rainfall patterns and extreme temperature variation occurs; this poses severe constraints on reproduction in small mammals. In the present study, the gonad morphometrics, gonadal histology and endocrine profiles of the female Lesser Egyptian jerboas (Jaculus jaculus) were studied over one year in a wild population from central Saudi Arabia. An unusual rainfall pattern occurred during this study period, with three out of four seasons receiving rainfall. Pregnant females were observed during every season when rainfall fell. Yet, a distinct reproduction pattern was also observed in the reproductive parameters of J. jaculus , likely entrained by ambient temperature and photoperiodic changes, with indicators of reproductive activity being at its highest during the winter months. Jaculus jaculus, appear to possess an endogenous circannual rhythm (seasonality) of breeding, entrained by ambient temperature and photoperiod. However, they have a plasticity to their breeding strategy, which allows them to breed opportunistically. As global warming takes effect, many species which currently inhabit temperate regions may experience desertification. Understanding how species that inhabit deserts today are adapted to these harsh conditions may allow researchers to identify temperate species that are more at risk to climatic changes due to global warming. • Female Lesser Egyptian jerboas are opportunistic breeders. • Offspring production is linked to the onset of rainfall. • Yet, female Lesser Egyptian jerboas show some seasonality in their reproduction. • Other powerful zeitgebers of reproduction in the female Lesser Egyptian jerboas are ambient temperature and photoperiod. • Jerboas combined opportunistic and seasonal breeding strategycould allow for survival in future climatic scenarios. [ABSTRACT FROM AUTHOR]

Throughout history, wildlife has been regarded as a major source of infectious diseases. Rodentia, the most speciose order of mammals, whose members are recognised hosts of more than 60 zoonotic diseases, represent a potential threat to human health. Recently, epidemiological data from Saudi Arabia indicated an actual growth in the number of emerging and/or re-emerging cases of several zoonoses. However, there is a lack of studies focusing on the molecular taxonomy of rodents and the pathogens they may harbour in this region. In this study, the first molecular characterisation of six rodent taxa in this region is provided, based on partial Cyt B and 16S genes. The data confirm the spread of rodent-associated C. burnetii strains in Jazan, southwestern Saudi Arabia. The PCR targeting IS111, the multi-copy transposase gene, revealed 17.5% (36/205) positive samples, whereas the second nested PCR, targeting the single-copy Com1 gene, revealed 16.6% (34/205) positive samples. Phylogenetic and network analyses indicated the presence of four haplotypes of C. burnetii within the studied localities. One major haplotype (H-2) was observed in all rodent species and from 18 localities. The infection rates of C. burnetii among studied species, localities and habitats were not significantly different (>0.05). Our results facilitate the assessment of the health risk associated with rodents and the development of strategies to control the increasing impacts of Q fever., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)

Serological screening of 199 serum samples from Dromedary camels-from different cities in Saudi Arabia-was performed using enzyme-linked immunosorbent assay for detecting antibodies against two cyst-forming coccidian parasites, namely Toxoplasma gondii and Neospora caninum. Antibodies against T. gondii were detected in 68 (34.2%) samples, while those against N. caninum were present in 33 (16.6%) samples. The highest seroprevalence of T. gondii antibodies was reported in samples from Taif (51.2%), while the lowest seroprevalence was reported in samples from Riyadh and Hofuf (15.1%). The highest seroprevalence of N. caninum antibodies was reported in samples from Jizan (35.9%) while the lowest was reported in samples from Taif (2.4%). A total of 47 male and 21 female camels exhibited antibodies against T. gondii , while 19 male and 14 female camels showed antibodies against N. caninum . Concurrent detection of both T. gondii and N. caninum antibodies was observed in 18 camels. It has been demonstrated that T. gondii and N. caninum antibodies are prevalent in camels from different cities of the Kingdom of Saudi Arabia.

This study was undertaken to determine the seroprevalence of Toxoplasma gondii in cats in the area of Riyadh, Saudi Arabia. We examined 200 serum samples collected from stray and household cats for T. gondii antibodies by ELISA. The overall seroprevalence was 26%. Seroprevalence was significantly higher (p < 0.05) in stray cats (39%) compared with household cats (13%). The prevalence in male and female cats was 31.4% and 20.4%, respectively. The seroprevalence increased with age and was higher in cats over 6 years of age (43%) as opposed to cats less than 4 years old (33%). Seropositivity varied according to the breed. The highest was recorded among cats of American breed (38.5%), followed by Persian (27%), Himalayan (21%), Bengali (11.5%), and Siamese (2%). Antibodies were not reported from the Turkish breed. Overall seroprevalence among cats did not vary significantly with season or with the localities within the Riyadh municipality. We also examined 100 faecal samples from stray and household cats by flotation technique, which revealed an overall prevalence of 12% of T. gondii oocycts.

Despite its largely hyper-arid and inhospitable climate today, the Arabian Peninsula is emerging as an important area for investigating Pleistocene hominin dispersals. Recently, a member of our own species was found in northern Arabia dating to ca. 90 ka, while stone tools and fossil finds have hinted at an earlier, middle Pleistocene, hominin presence. However, there remain few direct insights into Pleistocene environments, and associated hominin adaptations, that accompanied the movement of populations into this region. Here, we apply stable carbon and oxygen isotope analysis to fossil mammal tooth enamel (n = 21) from the middle Pleistocene locality of Ti's al Ghadah in Saudi Arabia associated with newly discovered stone tools and probable cutmarks. The results demonstrate productive grasslands in the interior of the Arabian Peninsula ca. 300-500 ka, as well as aridity levels similar to those found in open savannah settings in eastern Africa today. The association between this palaeoenvironmental information and the earliest traces for hominin activity in this part of the world lead us to argue that middle Pleistocene hominin dispersals into the interior of the Arabian Peninsula required no major novel adaptation.

Bartonellae bacteria are associated with several re-emerging human diseases. These vector-borne pathogens have a global distribution, yet data on Bartonella prevalence and diversity in the Arabian Peninsula are limited. In this study we assessed the Bartonella infection status of the Baluchistan gerbil (Gerbillus nanus), a species associated with pastoral communities throughout the Middle East region, using a multi-gene PCR screening approach. The results demonstrated that 94 (68.1%) of the 138 gerbils trapped on a monthly basis, over a period of one year, were PCR-positive. Sequencing of the gltA gene region confirmed the presence of four discrete Bartonella lineages (I-IV) and high levels of co-infection (33.0%). Each of the four lineages, varied in overall abundance (7.5%-47.9%) and had discernible seasonal peaks. Bartonella status was significantly correlated with ectoparasite presence, but not with sex, nor with season. Statistical analyses further revealed that co-infected individuals had a significantly higher relative body condition. Multi-locus sequence analysis (MLSA) performed with a concatenated dataset of three genetic loci (gltA, nuoG, and rpoB), 1452 nucleotides (nt) in length confirmed that lineage IV, which occurred in 24 PCR-positive animals (25.5%), is most closely related to zoonotic B. elizabethae. The remaining three lineages (I-III) formed a monophyletic clade which, on the basis of gltA was shown to contain bartonellae from diverse Gerbillinae species from the Middle East, suggestive of a gerbil-associated species complex in this region. Lineage I was identical to a Candidatus B. sanaae strain identified previously in Bushy-tailed jirds (Sekeetamys calurus) from Egypt, wherease MLSA indicate that lineages II and III are novel. The high levels of infection and co-infection, together with the presence of multiple Bartonella lineages indicate that Gerbillus nanus is likely a natural reservoir of Bartonella in the Arabian Peninsula., (Copyright © 2018 Elsevier B.V. All rights reserved.)

Middle East respiratory syndrome (MERS), a highly lethal respiratory disease caused by a novel coronavirus (MERS-CoV), is an emerging disease with high potential for epidemic spread. It has been listed by the WHO and the Coalition for Epidemic Preparedness Innovations (CEPI) as an important target for vaccine development. While initially the majority of MERS cases were hospital acquired, continued emergence of MERS is attributed to community acquisition, with camels likely being the direct or indirect source. However, the majority of patients do not describe camel exposure, making the route of transmission unclear. Here, using sensitive immunological assays and a cohort of camel workers (CWs) with well-documented camel exposure, we show that approximately 50% of camel workers (CWs) in the Kingdom of Saudi Arabia (KSA) and 0% of controls were previously infected. We obtained blood samples from 30 camel herders, truck drivers, and handlers with well-documented camel exposure and from healthy donors, and measured MERS-CoV-specific enzyme-linked immunosorbent assay (ELISA), immunofluorescence assay (IFA), and neutralizing antibody titers, as well as T cell responses. Totals of 16/30 CWs and 0/30 healthy control donors were seropositive by MERS-CoV-specific ELISA and/or neutralizing antibody titer, and an additional four CWs were seronegative but contained virus-specific T cells in their blood. Although virus transmission from CWs has not been formally demonstrated, a possible explanation for repeated MERS outbreaks is that CWs develop mild disease and then transmit the virus to uninfected individuals. Infection of some of these individuals, such as those with comorbidities, results in severe disease and in the episodic appearance of patients with MERS. IMPORTANCE The Middle East respiratory syndrome (MERS) is a coronavirus (CoV)-mediated respiratory disease. Virus transmission occurs within health care settings, but cases also appear sporadically in the community. Camels are believed to be the source for community-acquired cases, but most patients do not have camel exposure. Here, we assessed whether camel workers (CWs) with high rates of exposure to camel nasal and oral secretions had evidence of MERS-CoV infection. The results indicate that a high percentage of CWs were positive for virus-specific immune responses but had no history of significant respiratory disease. Thus, a possible explanation for repeated MERS outbreaks is that CWs develop mild or subclinical disease. These CWs then transmit the virus to uninfected individuals, some of whom are highly susceptible, develop severe disease, and are detected as primary MERS cases in the community., (Copyright © 2018 Alshukairi et al.)

Study Objectives: The Arabian oryx lives under hyperarid conditions in the Arabian Desert and exhibits temporal niche switching of activity patterns at a seasonal level. The objective of the current study was to provide a polysomnographic-based study of sleep in free-roaming Arabian oryx in their natural habitat to determine whether extreme seasonal climate variations resulted in changes in sleep patterns and physiology associated with the seasonal switching of temporal niches., Methods: Electroencephalography, nuchal electromyography, actigraphy, and subcutaneous temperature were recorded in free-roaming Arabian oryx in the Mahazat as-Sayd Protected Area, Kingdom of Saudi Arabia during winter and summer., Results: Total daily sleep time in winter was 6.69 and 3.77 hr in summer. In winter, oryx exhibited nocturnal sleep typical of artiodactyls of around 60 kg body mass. In summer, oryx slept mostly during the day and subcutaneous temperature was seen to rise during sleep, but not as rapidly as the rises observed in ambient air temperature. Rapid eye movement sleep formed a very small percentage of total sleep time, especially so in the summer., Conclusions: The unusual sleep patterns and physiology during summer appear to be related to high ambient air temperatures that affect both intrinsic and extrinsic factors necessary for survival. The Arabian oryx appears to use sleep physiology as an adaptive thermoregulatory mechanism in the hot summer months.

Meriones rex (King jird), Meriones libycus (Libyan jird), Acomys dimidiatus (Eastern spiny mouse), Acomys cahirinus (Egyptian spiny mouse), and Dipodillus dasyurus (Wagner's dipodil) are five species of small rodents of the superfamily Muroidea with distributions in Eastern Africa, Egypt, and the desert regions of the Arabian Peninsula. Water is scarce in these regions and may result in relatively low-digestible food. The aim of the present study is to describe and compare the gastrointestinal tract morphology and morphometry of these five species in order to elucidate whether morphology is influenced by phylogeny or dietary preference. Each segment of the gastrointestinal tract of each species was macroscopically examined and the length and basal surface area of each segment was measured. Standard histologic procedures were performed to determine a surface enlargement factor to determine the mucosal luminal surface area. A unilocular-hemiglandular stomach was observed in all the species examined. The caeca of all the species were long and arranged into a loose spiral toward the caecal tip with the ileocaecal and caeco-colic openings positioned close together. Two rows of oblique folds could be observed in the proximal colon of all species except in D. dasyurus which had longitudinal folds. Morphometric analysis showed the largest stomach in A. cahirinus and the largest caecum and colon in M. libycus. All the species can be grouped in the family Muridae in two subfamilies and similarities were observed including the hemiglandular stomach and relatively large caecum. It could be concluded that phylogeny plays an important role in determining gastrointestinal morphology while diet plays a subordinate role in the desert rodents in the present study., (© 2014 Wiley Periodicals, Inc.)

Eimeria dorcadis Mantovani, 1966 is redescribed from dorcas gazelle (Gazella dorcas (L.)) from Saudi Arabia. Oocysts were detected in 7 out of 22 faecal samples (32%) using floatation method. The sporulated oocysts are cylindrical, slightly flattened at the micropylar pole, measure in average 32 x 19 microm (27-36 x 16-24 microm), length/width ratio being 1.7 (1.5-2.1). Oocyst wall is 1.2 microm thick, smooth, double-layered; outer layer is slightly thicker, light blue in colour; inner layer brownish, with micropyle in the inner layer and apparently continual outer one, measures 2.2 microm, but lacks a micropylar cap. The sporocyst elongate-ellipsoidal, measures 14 x 8 microm (12-17 x 6-9 microm), length/width ratio being 1.8, with sporocyst residuum as circular compact, coarse, refractile granules. Stieda body is present, while substieda body is absent. Sporozoites banana-shaped, measure 11 x 2.5 microm, each with a large spheroidal refractile body at the wider pole. Sporulation time is 2-3 days at 25 +/- 2 degrees C.