5 results on '"molecular data"'
Search Results
2. Three New Species of Placoneis Mereschkowsky (Bacillariophyceae: Cymbellales) with Comments on Cryptic Diversity in the P. elginensis —Group.
- Author
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Kezlya, Elena, Glushchenko, Anton, Maltsev, Yevhen, Gusev, Evgeniy, Genkal, Sergey, Kociolek, John Patrick, and Kulikovskiy, Maxim
- Subjects
DIATOMS ,SPECIES ,GENETIC markers ,NAVICULA ,NATIONAL parks & reserves ,BODIES of water - Abstract
Using genetic markers 18S V4 rDNA and rbcL and morphological investigation of the diatom genus Placoneis, we described three new species. The new species, Placoneis baikaloelginensis sp. nov., Placoneis subundulata sp. nov., Placoneis neohambergii sp. nov. were isolated from Russia (Lake Baikal) and Vietnam (waterbodies of Cát Tiên National Park (Đồng Nai Province) and Khánh Hòa Province). We examine relationships within the Cymbellales and show that the genera Placoneis, Paraplaconeis and Geissleria are phylogenetically independent. We discuss the importance of careful identification of strains used for phylogenetic analysis and we show the history of identification of several different Placoneis elginensis strains. After careful identification of Placoneis elginensis vouchers, we found that we have a few independent species. The question of cryptic or pseudocryptic species in this context is discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
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3. New species of Parasaccocoelium (Haploporidae) and new genus Pseudohaplosplanchnus (Haplosplanchnidae) from mullet fish in the Far East of Russia and Vietnam: morphological and molecular data.
- Author
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Atopkin DM, Besprozvannykh VV, Ha DN, Nguyen VH, and Nguyen VT
- Subjects
- Animals, DNA, Helminth genetics, DNA, Ribosomal genetics, Phylogeny, RNA, Ribosomal, 28S genetics, Russia, Sequence Analysis, DNA, Trematoda genetics, Vietnam, Fish Diseases parasitology, Fishes parasitology, Trematoda anatomy & histology, Trematoda classification
- Abstract
A description and the molecular characterization of two new species in the Haploporidae and Haplosplanchnidae families are provided herein. Parasaccocoelium armatum n. sp. was collected from the intestine of a Mugil cephalus Linnaeus, 1758 from the Primorsky region, Russia, and Pseudohaplosplanchnus catbaensis n. g. n. sp. was collected from Moolgarda seheli (Forsskål, 1775) in the coastal waters of Cat Ba Island, Vietnam. The morphological features of P. armatum n. sp. closely resemble those of Parasaccocoelium polyovum, but these species differ from one another by hermaphroditic sac and vitellaria area length and by maximal egg size. The main difference between P. armatum n. sp. and P. polyovum is the presence of an armed hermaphroditic duct in the new species. Molecular data support the case for inclusion of the studied trematodes in P. armatum n. sp. Worms P. catbaensis n. g. n. sp. from the mullet from Vietnam are morphologically close to Haplosplanchnus (Haplosplosplanchninae). The only difference between P. catbaensis n. g. n. sp. and species of Haplosplanchnus is the presence of few (1-7) large eggs, measuring 135-142 × 92-104 μm, versus numerous small eggs with a maximal size of 75 × 50 μm. Phylogenetic analysis showed that there is a contradiction between the morphological similarity of the worms and their position in the Haplosplanchnidae system, based on the genetic data. Results of this study indicate that P. catbaensis n. g. n. sp. is genetically distant from other representatives of Haplosplanchnus, despite their morphological similarity. According to the molecular data, P. catbaensis n. g. n. sp. is close to Hymenocotta mulli Manter, 1961 (Hymenocottinae). However, these species are considerably different to each other morphologically. Molecular data argue for the possibility of establishing a new subfamily for P. catbaensis n. g. n. sp. However, considering earlier studies of Haplosplanchnidae, we support the view that creating new subfamilies within this family is unreasonable because of the lack of molecular data for most haplosplanchnid species, which are necessary to resolve the problematic systematics and phylogeny of this family.
- Published
- 2020
- Full Text
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4. Description of a new species, Cryptocotyle lata sp. nov., and discussion of the phylogenetic relationships in Opisthorchioidea.
- Author
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Tatonova, Yulia V. and Besprozvannykh, Vladimir V.
- Subjects
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INSECT anatomy , *CHLOROPLAST DNA , *FRESHWATER snails , *CLONORCHIS sinensis , *PARASITE life cycles , *SPECIES , *BODY size - Abstract
Adult Cryptocotyle lata sp. nov. worms were obtained from experimental studies. In the Russian southern Far East, the life cycle of this parasite is carried out using freshwater snails (Boreoelona ussuriensis), freshwater fish, and birds as the first intermediate, second intermediate, and definitive hosts, respectively. The morphological indices of C. lata sp. nov. are closest to Cryptocotyle concava ; however, these two species differ in terms of their sizes of body, oral and ventral suckers, eggs, and the shape of their testes and ovaries. Analysis of the life cycles of the Cryptocotyle representatives suggested that C. concava were at least two cryptic species, one of which circulates using brackish water Hydrobia snails, and the other using freshwater Amnicola snails as the first intermediate hosts. Molecular data (i.e., the 28S gene and the second internal transcribed spacer (ITS2) of rDNA) were used to analyze the phylogenetic relationships of C. lata sp. nov. and other representatives of Opisthorchioidea. The long repeats and secondary structure of the ITS1 region were studied. Representatives of the Opisthorchiidae and several species from Heterophyidae (including the genus Cryptocotyle) were found to have molecular features that suggested that these species belonged to Opisthorchiidae. At the same time, the genetic relatedness of worms, which are united in common clusters on phylogenetic trees, is consistent with the use of the first intermediate hosts from different taxonomic groups in their life cycles; namely, snails of the Truncatelloidea are hosts of trematodes from a cluster with Opisthorchiidae and a number species of the family Heterophyidae, while snails of the Cerithioidea are hosts of worms from a cluster that includes only the Heterophyidae. In addition, the results of genetic studies indicate that Clonorchis sinensis , Metorchis ussuriensis, Metorchis bilis , Metorchis xanthosomus , and Metorchis orientalis should be included in the genus Opisthorchis. Unlabelled Image • A new species, Cryptocotyle lata sp. nov., was described in Russia. • Morphological description, life cycle and molecular data are provided. • Some heterophyids belong to Opisthorchiidae according to genetic data. • It is consistent with the use of the first intermediate hosts in their life cycles. • Opisthorchiids from different genera should be included in one genus. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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- View/download PDF
5. Life-cycle and genetic characterization of Astiotrema odhneri Bhalerao, 1936 sensu Cho & Seo 1977 from the Primorsky Region (Russian Far East).
- Author
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Besprozvannykh VV, Atopkin DM, Ermolenko AV, Kharitonova AV, and Khamatova AY
- Subjects
- Animals, Larva parasitology, Oocysts physiology, Perciformes parasitology, Phylogeny, RNA, Ribosomal, 28S genetics, Ranidae parasitology, Rivers parasitology, Russia, Snails parasitology, Trematoda anatomy & histology, Trematoda genetics, Intestines parasitology, Life Cycle Stages physiology, Trematoda classification, Trematoda growth & development, Turtles parasitology
- Abstract
Adult Astiotrema odhneri Bhalerao, 1936 sensu Cho & Seo 1977 were found in the intestine of a freshwater turtle, Pelodiscus sinensis (Wiegmann), from the Komissarovka River Basin, Primorsky Region, Russia. It was established that the first intermediate host of this parasite is a snail, Anisus centrifugops, and that the second intermediate hosts include the snails, Helicorbis sujfunensis and A. centrifugops, tadpoles of the frog Rana dybowskii, and the fish Perccottus glenii. The development of A. odhneri includes the formation of sporocyst and xiphidiocercariae, which is typical for species belonging to Plagiorchioidea. Phylogenetic analysis based on 28S rRNA gene sequences showed that A. odhneri, together with Astiotrema monticellii, form a monophyletic clade that was closer to Opisthorchioidea than to any other taxon represented in the tree. However, phylogenetic analysis without outgroup taxon indicated a high degree of differentiation of Astiotrema from both Plagiorchioidea and Opisthorchioidea., (Copyright © 2015. Published by Elsevier Ireland Ltd.)
- Published
- 2015
- Full Text
- View/download PDF
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