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We performed an experimental manipulation of trahira Hoplias aff. malabaricus in a series of isolated lakes of the upper Paraná River floodplain to evaluate its short-term impact on the structure of fish assemblages. The effects of trahira density (treatment groups: addition, removal, and reference) in two habitat categories (open and macrophyte-covered areas) on attributes of the fish assemblage structure were evaluated (using rm-ANOVA) over 120 days. Reductions in species richness were recorded in all assemblages and were more pronounced at the end of the experiment within macrophyte-covered areas of the lakes where H. aff. malabaricus was removed. In these lakes, the number of fish was also significantly smaller and evenness was significantly higher than in those in which trahira were added or maintained at natural densities. The increase of the relative abundance of all size classes over the first 60 days on the assemblages where trahira was present, and the decrease of the small-sized fish where trahira was absent contributed to the lack of pronounced alterations in total biomass. The absence of the predator from its preferred habitat was found to negatively affect the less abundant species, which seemed to be highly sensitive to the effects of interspecific competition among prey species. In addition to the well-known effects of hydrological seasonality, the role played by native predators might be important in determining the persistence of local species in the fish assemblages of Neotropical floodplains. [ABSTRACT FROM AUTHOR]