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Since 2020, clade 2.3.4.4b highly pathogenic avian influenza H5N8 and H5N1 viruses have swept through continents, posing serious threats to the world. Through comprehensive analyses of epidemiological, genetic, and bird migration data, we found that the dominant genotype replacement of the H5N8 viruses in 2020 contributed to the H5N1 outbreak in the 2021/2022 wave. The 2020 outbreak of the H5N8 G1 genotype instead of the G0 genotype produced reassortment opportunities and led to the emergence of a new H5N1 virus with G1's HA and MP genes. Despite extensive reassortments in the 2021/2022 wave, the H5N1 virus retained the HA and MP genes, causing a significant outbreak in Europe and North America. Furtherly, through the wild bird migration flyways investigation, we found that the temporal-spatial coincidence between the outbreak of the H5N8 G1 virus and the bird autumn migration may have expanded the H5 viral spread, which may be one of the main drivers of the emergence of the 2020-2022 H5 panzootic. [ABSTRACT FROM AUTHOR]

During autumn migration, bird‐eating raptors are thought to rely on flocks of migrant songbirds (Passeriformes) as a critical resource to fuel the energetic demands of long‐distance migration. However, this hypothesis has been challenging to investigate, and the foraging ecology during migration of most migrant raptors remains unexplored. To address these knowledge gaps, our objective was to document the diet of a bird‐eating falcon on active migration. We swabbed visible and trace prey residues from the exterior surface of beaks and talons of migrant juvenile Merlins Falco columbarius in the autumn of 2015 and 2016 at a raptor migration monitoring station positioned on the Pacific Coast of western North America. We used a DNA metabarcoding approach and detected the presence of 40 distinct prey species derived from 210 individual prey species detections on 63 of the 72 (87.5%) migrant juvenile Merlins sampled. We detected an average of 3.3 ± 1.6 prey species on individual Merlins. We found that juvenile males selected smaller prey on average compared with juvenile females. Of the prey species detected, over 80% were migratory songbird species within the Pacific Flyway. In 2015, we detected a greater proportion of irruptive migrants in juvenile Merlin diet compared with 2016. In 2016, we found that the proportion of annual migrants consumed by Merlins corresponded to the timing of peak annual songbird migration in the Pacific Flyway. This study represents one of the first detailed descriptions of songbird prey species consumed by a migrating raptor and supports the hypothesis that migrating juvenile Merlins rely on migrant songbirds to support the energetic demands of migration. [ABSTRACT FROM AUTHOR]

Preserving avian flyway connectivity has long been challenged by our capacity to meaningfully quantify continental habitat dynamics and bird movements at temporal and spatial scales underlying long‐distance migrations. Waterbirds migrating hundreds or thousands of kilometers depend on networks of wetland stopover sites to rest and refuel. Entire populations may rely on discrete wetland habitats, particularly in arid landscapes where the loss of limited stopover options can have disproportionately high impacts on migratory cost. Here, we examine flyway connectivity in water‐limited ecosystems of western North America using 108 GPS tagged greater sandhill cranes. Bird movements were used to reconstruct wetland stopover networks across three geographically unique sub‐populations spanning 12 U.S.–Mexican states and Canadian provinces. Networks were monitored with remote sensing to identify long‐term (1988–2019) trends in wetland and agricultural resources supporting migration and evaluated using network theory and centrality metrics as a measure of stopover site importance to flyway connectivity. Sandhill crane space use was analyzed in stopover locations to identify important ownership and landscape factors structuring bird distributions. Migratory efficiency was the primary mechanism underpinning network function. A small number of key stopover sites important to minimizing movement cost between summering and wintering locations were essential to preserving flyway connectivity. Localized efficiencies were apparent in stopover landscapes given prioritization of space use by birds where the proximity of agricultural food resources and flooded wetlands minimized daily movements. Model depictions showing wetland declines from 16% to 18% likely reflect a new normal in landscape drying that could decouple agriculture–waterbird relationships as water scarcity intensifies. Sustaining network resilience will require conservation strategies to balance water allocations preserving agricultural and wetlands on private lands that accounted for 67–96% of habitat use. Study outcomes provide new perspectives of agroecological relationships supporting continental waterbird migration needed to prioritize conservation of landscapes vital to maintaining flyway connectivity. [ABSTRACT FROM AUTHOR]

To better understand the ecological implications of global climate change for species that display geographically and seasonally dynamic life‐history strategies, we need to determine where and when novel climates are projected to first emerge. Here, we use a multivariate approach to estimate time of emergence (ToE) of novel climates based on three climate variables (precipitation, minimum and maximum temperature) at a weekly temporal resolution within the Western Hemisphere over a 280‐yr period (2021–2300) under a high emissions scenario (RCP8.5). We intersect ToE estimates with weekly estimates of relative abundance for 77 passerine bird species that migrate between temperate breeding grounds in North America and southern tropical and subtropical wintering grounds using observations from the eBird citizen‐science database. During the non‐breeding season, migrants that winter within the tropics are projected to encounter novel climates during the second half of this century. Migrants that winter in the subtropics are projected to encounter novel climates during the first half of the next century. During the beginning of the breeding season, migrants on their temperate breeding grounds are projected to encounter novel climates during the first half of the next century. During the end of the breeding season, migrants are projected to encounter novel climates during the second half of this century. Thus, novel climates will first emerge ca 40–50 yr earlier during the second half of the breeding season. These results emphasize the large seasonal and spatial variation in the formation of novel climates, and the pronounced challenges migratory birds are likely to encounter during this century, especially on their tropical wintering grounds and during the transition from breeding to migration. When assessing the ecological implications of climate change, our findings emphasize the value of applying a full annual cycle perspective using standardized metrics that promote comparisons across space and time. [ABSTRACT FROM AUTHOR]

Migratory behavior of waterfowl populations in North America has traditionally been broadly characterized by four north-south flyways, and these flyways have been central to the management of waterfowl populations for more than 80 yr. However, previous flyway characterizations are not easily updated with current bird movement data and fail to provide assessments of the importance of specific geographical regions to the identification of flyways. Here, we developed a network model of migratory movement for four waterfowl species, Mallard ( Anas platyrhnchos), Northern Pintail ( A. acuta), American Green-winged Teal ( A. carolinensis), and Canada Goose ( Branta canadensis), in North America, using bird band and recovery data. We then identified migratory flyways using a community detection algorithm and characterized the importance of smaller geographic regions in identifying flyways using a novel metric, the consolidation factor. We identified four main flyways for Mallards, Northern Pintails, and American Green-winged Teal, with the flyway identification in Canada Geese exhibiting higher complexity. For Mallards, flyways were relatively consistent through time. However, consolidation factors revealed that for Mallards and Green-winged Teal, the presumptive Mississippi flyway was potentially a zone of high mixing between other flyways. Our results demonstrate that the network approach provides a robust method for flyway identification that is widely applicable given the relatively minimal data requirements and is easily updated with future movement data to reflect changes in flyway definitions and management goals. [ABSTRACT FROM AUTHOR]

Aim Avian migration strategies balance the costs and benefits of annual movements between breeding and wintering grounds. If similar constraints affect a large numbers of species, geographical concentrations of migration routes, or migration flyways, may result. Here we provide the first population-level empirical evaluation of the structure and seasonal dynamics of migration flyways for North American terrestrial birds and their association with atmospheric conditions. Location Contiguous USA. Methods We modelled weekly probability of occurrence for 93 migratory species using spatio-temporal exploratory models and eBird occurrence data for the combined period 2004 to 2011. We used hierarchical cluster analysis to identify species with shared migration routes based on normalized spatio-temporal representations of autumn migration. We summarized atmospheric conditions within flyways using nocturnal wind velocity and bearing estimated at three isobaric levels (725, 825 and 925 mbar) for the combined period 2008 to 2011. Results We identified three migration flyways: an eastern and western flyway whose paths shifted westwards in the spring, and a central flyway whose core boundaries overlapped with the eastern flyway and whose width was more constricted in the autumn. The seasonal shift of the eastern flyway created potentially longer migration journeys in the spring, but this longer route coincides with a low-level jet stream that may enhance migration speeds. Atmospheric conditions appeared to have a more limited role in the seasonal dynamics of the western flyway. Main conclusions Migration routes for terrestrial species in North America can be organized into three broadly defined migration flyways: a geographically distinct flyway located west of the 103rd meridian and two interrelated flyways located east of the 103rd meridian. Seasonal shifts in flyway locations reflect the influence of looped migration strategies that for the eastern flyway can be explained by the trade-off between minimizing total migration distance while maintaining an association with favourable atmospheric conditions. [ABSTRACT FROM AUTHOR]

The North American Breeding Bird Survey, Christmas Bird Count, and regional and national conservation assessments provide convincing evidence that the short-eared owl ( Asio flammeus) is experiencing a range-wide, long-term decline in abundance in North America. However, the species has received little conservation or research attention. The short-eared owl is vulnerable to decline because it relies heavily on large, intact grasslands and a specialized diet of unpredictable small mammal prey. The species' nomadic movements compound these vulnerabilities by making a decline difficult to detect with current monitoring programs while obfuscating stewardship responsibilities for managers. The primary threat to the species is loss, fragmentation, and degradation of large tracts of native grasslands and wetlands. We propose the following conservation priorities to better understand and begin addressing the short-eared owl's decline: 1) better define and protect important habitats; 2) improve population monitoring; 3) determine seasonal and annual movements; 4) re-evaluate NatureServe's short-eared owl national conservation classifications; 5) develop management plans and tools; and 6) classify raptors, including short-eared owls, as migratory birds in Canada. We contend that the short-eared owl's need for habitat conservation at large spatial scales, status as a predator, and high reproductive potential that affords the species capacity to recover, make it an effective and useful candidate as an umbrella species for grassland conservation. © 2014 The Wildlife Society. [ABSTRACT FROM AUTHOR]

Canada geese (Branta canadensis) are of particular concern to aviation in the USA because of their large size, flocking behavior, attraction to airports for grazing, and, for the resident population, year-round presence in urban environments. We documented trends in resident and migrant Canada goose populations in North America from 1970 to 2012, and for 1990 to 2012 examined these trends in relation to trends in reported civil aircraft collisions (strikes) with Canada geese. The overall Canada goose population increased 4.5 fold from 1.26 million in 1970 to 5.69 million in 2012. Most of this overall increase was due to a 15.6-fold increase in the population of resident geese (from 0.25 to 3.85 million), especially during the 1990s when the population increased at a mean annual rate of 12.7%. From 2000 to 2012, the resident population has stabilized, fluctuating between 3.36 and 3.85 million birds. The migrant population has remained relatively stable since 1990, with the population in 2012 estimated at 1.84 million. Resident geese comprised 68% of the total Canada goose population in 2012 compared to 41% in 1990 and 20% in 1970. From 1990 to 2012, 1,403 Canada goose strikes with civil aircraft were reported in the USA, of which 704 (50%) caused damage. The strike rate and damaging strike rate for all geese and for resident geese only (strikes in May to September) increased in parallel with the increase in the total Canada goose population (resident and migratory combined) and resident population, respectively, from 1990 to 1999. From 1999 to 2012, the strike rate and especially the damage strike rate exhibited a downward trend, especially for strikes involving resident geese during May to September. We hypothesize that this decline is due to Canada goose management programs implemented at many airports and in other urban areas. [ABSTRACT FROM AUTHOR]

Monarch butterflies (Danaus plexippus) in eastern North America must make frequent stops to rest and refuel during their annual migration. During these stopovers, monarchs form communal roosts, which are often observed by laypersons. Journey North is a citizen science program that compiles roost observations, and we examined these data in an attempt to identify habitat characteristics of roosts. From each observation we extracted information on the type of vegetation used, and we used GIS and a national landcover data set to determine land cover characteristics within a 10 km radius of the roost. Ninety-seven percent of roosts were reported on trees; most were in pines and conifers, maples, oaks, pecans and willows. Conifers and maples were used most often in northern flyway regions, while pecans and oaks were more-frequently used in southern regions. No one landcover type was directly associated with roost sites, although there wasmore open water near roost sites than around random sites. Roosts in southern Texas were associated primarily with grasslands, but this was not the case elsewhere. Considering the large variety of tree types used and the diversity of landcover types around roost sites, monarchs appear highly-adaptable in terms of roost site selection. [ABSTRACT FROM AUTHOR]

Background: Our ability to monitor populations or species that were once threatened or endangered and in the process of recovery is enhanced by using genetic methods to assess overall population stability and size over time. This can be accomplished most directly by obtaining genetic measures from temporally-spaced samples that reflect the overall stability of the population as given by changes in genetic diversity levels (allelic richness and heterozygosity), degree of population differentiation (FST and DEST), and effective population size (Ne). The primary goal of any recovery effort is to produce a longterm self-sustaining population, and these genetic measures provide a metric by which we can gauge our progress and help make important management decisions. Methodology/Principal Findings: The peregrine falcon in North America (Falco peregrinus tundrius and anatum) was delisted in 1994 and 1999, respectively, and its abundance will be monitored by the species Recovery Team every three years until 2015. Although the United States Fish and Wildlife Service makes a distinction between tundrius and anatum subspecies, our genetic results based on eleven microsatellite loci suggest limited differentiation that can be attributed to an isolation by distance relationship and warrant no delineation of these two subspecies in its northern latitudinal distribution from Alaska through Canada into Greenland. Using temporal samples collected at Padre Island, Texas during migration (seven temporal time periods between 1985-2007), no significant differences in genetic diversity or significant population differentiation in allele frequencies between time periods were observed and were indistinguishable from those obtained from tundrius/anatum breeding locations throughout their northern distribution. Estimates of harmonic mean Ne were variable and imprecise, but always greater than 500 when employing multiple temporal genetic methods. Conclusions/Significance: These results, including those from simulations to assess the power of each method to estimate Ne, suggest a stable or growing population, which is consistent with ongoing field-based monitoring surveys. Therefore, historic and continuing efforts to prevent the extinction of the peregrine falcon in North America appear successful with no indication of recent decline, at least from the northern latitude range-wide perspective. The results also further highlight the importance of archiving samples and their use for continual assessment of population recovery and long-term viability. [ABSTRACT FROM AUTHOR]

The article presents new research development in avian migration which associated with the landbird migration in the western North America. Migration is considered as the most dangerous period for the migratory birds annual cycle because it resulted to high mortality rates. The recognition given to the stopover ecology, habitats and migration routes of the landbirds in the diverse and changing landscapes of American West, as well as the expanded use of radars, genetic data, plasma metabolites and multi-investigator collaborations have contributed to better and significant understanding of migration patterns of the birds in the region. These new information about the migration of the landbirds have led to advances and future research directions for migratory birds.

Computational analyses of pathogen genomes are increasingly used to unravel the dispersal history and transmission dynamics of epidemics. Here, we show how to go beyond historical reconstructions and use spatially-explicit phylogeographic and phylodynamic approaches to formally test epidemiological hypotheses. We illustrate our approach by focusing on the West Nile virus (WNV) spread in North America that has substantially impacted public, veterinary, and wildlife health. We apply an analytical workflow to a comprehensive WNV genome collection to test the impact of environmental factors on the dispersal of viral lineages and on viral population genetic diversity through time. We find that WNV lineages tend to disperse faster in areas with higher temperatures and we identify temporal variation in temperature as a main predictor of viral genetic diversity through time. By contrasting inference with simulation, we find no evidence for viral lineages to preferentially circulate within the same migratory bird flyway, suggesting a substantial role for non-migratory birds or mosquito dispersal along the longitudinal gradient. Classical epidemiological approaches have been limited in their ability to formally test hypotheses. Here, Dellicour et al. illustrate how phylodynamic and phylogeographic analyses can be leveraged for hypothesis testing in molecular epidemiology using West Nile virus in North America as an example. [ABSTRACT FROM AUTHOR]

Large-scale monitoring of avian species is often conducted by observers driving rural roads and highways. Surveys along roads allow for easy and reliable access over time and the ability to survey large geographic areas in a relatively short period of time. However, if the landscape directly adjacent to these roadside transects is not representative of the greater landscape inhabited by the bird species, then estimates of abundance along the route may not be accurate for the greater landscape. Moreover, inferences regarding abundance, distribution, population trend, and habitat use in the greater landscape may not be valid. Using land cover data from the National Land Cover Database (NLCD), we recently conducted an assessment that revealed a satisfactorily high level of similarity in land cover composition between landscapes immediately adjacent to North American Breeding Bird Survey (BBS) routes (Buffer distance of 0.4 km on either side of route) and the larger landscapes (buffer distance of 10 km) in which they are embedded. Thus, local representativeness was high, as was regional representativeness (a comparison of similarity between combined local landscapes and a larger region containing the routes). Motivated by this positive outcome, we now provide a data set of land cover composition in six different-sized landscapes and land configuration in four different-sized landscapes surrounding each of 3980 BBS routes. We used a geographic information system (GIS) to produce 30 X 30 m raster maps of NLCD 2006 land cover types for each route in each of 30 Bird Conservation Regions. For each BBS route, the data set consists of pixel counts for each of 16 land cover types. These pixel counts are suitable for conversion into proportions for comparison of landscapes of different sizes. Additionally, we provide three measures of landscape configuration for each BBS route. The data set will be useful to researchers analyzing BBS bird data as it represents the first time that a vast majority of BBS routes have been individually linked to a land cover database. [ABSTRACT FROM AUTHOR]