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Background: Availability of appropriate genetics is important for the development of smallholder poultry (SHP). The biological potential of improved dual purpose chicken germplasms was evaluated in Nigeria., Methods: A total of six breeds (Fulani, FUNAAB Alpha, Kuroiler, Noiler, Sasso, and Shika-Brown) were tested on-station, in deep litter houses at two test centres (Public and private facility) for 504 days. Birds were fed ad libitum for the first 140 days after which restricted feeding was practised., Result: Lowest and highest hatchability of eggs set was 55% (FUNAAB Alpha) and 89% (Sasso), respectively. At 140 days, male live weights were 200%-300 % higher than the local chickens (975 g) except Shika-Brown (152%) and Fulani (135%). Lowest (p < 0.05) age at first egg was 119 days for Shika-Brown and 120 days for FUNAAB Alpha and Kuroiler. Highest hen-housed egg production was 192 for Shika-Brown, and feed intake per dozen eggs was lowest (p < 0.05) for Shika-Brown (2.9 kg) and FUNAAB Alpha (2.9 kg). Mortality rate of the locally sourced breeds (Fulani, FUNAAB Alpha, Noiler, and Shika-Brown) was significantly lower (p < 0.05) than the foreign-sourced breeds (Kuroiler, Sasso) during brooding, growing and laying., Conclusion: Results from this study identified FUNAAB Alpha and Noiler as being more suitable for dual-purpose functions (egg and meat), while Sasso and Kuroiler (meat) and Shika-Brown (egg) were observed to be better suited for single purpose functions. These findings could guide the introduction of smallholder poultry-specific hybrid germplasms for the development of the smallholder poultry production systems in Nigeria.

Background: Avian leukosis virus subgroup E (ALVE) insertions are endogenous retroviruses (ERV) that are restricted to the domestic chicken and its wild progenitor. In commercial chickens, ALVE are known to have a detrimental effect on productivity and provide a source for recombination with exogenous retroviruses. The wider diversity of ALVE in non-commercial chickens and the role of these elements in ERV-derived immunity (EDI) are yet to be investigated., Results: In total, 974 different ALVE were identified from 407 chickens sampled from village populations in Ethiopia, Iraq, and Nigeria, using the recently developed obsERVer bioinformatics identification pipeline. Eighty-eight percent of all identified ALVE were novel, bringing the known number of ALVE integrations to more than 1300 across all analysed chickens. ALVE content was highly lineage-specific and populations generally exhibited a large diversity of ALVE at low frequencies, which is typical for ERV involved in EDI. A significantly larger number of ALVE was found within or near coding regions than expected by chance, although a relative depletion of ALVE was observed within coding regions, which likely reflects selection against deleterious integrations. These effects were less pronounced than in previous analyses of chickens from commercial lines., Conclusions: Identification of more than 850 novel ALVE has trebled the known diversity of these retroviral elements. This work provides the basis for future studies to fully quantify the role of ALVE in immunity against exogenous ALV, and development of programmes to improve the productivity and welfare of chickens in developing economies.