129 results on '"Matthew R."'
Search Results
2. Multi‐omic analysis reveals genes and proteins integral to bioactivity of Echinochrome A isolated from the waste stream of the sea urchin industry in Aotearoa New Zealand.
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Hammond, Joseph, Das, Isabella M., Paenga, Ruihana, Caddie, Manu, Skinner, Damian, Sheridan, Jeffrey P., Miller, Matthew R., and Munkacsi, Andrew B.
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SEA urchins ,IRON supplements ,PROTEOMICS ,FOOD waste ,INOSITOL phosphates ,CHELATING agents ,WASTE products - Abstract
Evechinus chloroticus (commonly known as kina) is a sea urchin species endemic to New Zealand. Its roe is a culinary delicacy to the indigenous Māori and a globally exported food product. Echinochrome A (Ech A) is a bioactive compound isolated from the waste product of kina shells and spines; however, the molecular mechanisms of Ech A bioactivity are not well understood, partly due to Ech A never being studied using unbiased genome‐wide analysis. To explore the high‐value pharmaceutical potential of kina food waste, we obtained unbiased functional genomic and proteomic profiles of yeast cells treated with Echinochrome A. Abundance was measured for 4100 proteins every 30 min for four hours using fluorescent microscopy, resulting in the identification of 92 proteins with significant alterations in protein abundance caused by Ech A treatment that were over‐represented with specific changes in DNA replication, repair and RNA binding after 30 min, followed by specific changes in the metabolism of metal ions (specifically iron and copper) from 60–240 min. Further analysis indicated that Ech A chelated iron, and that iron supplementation negated the growth inhibition caused by Ech A. Via a growth‐based genome‐wide analysis of 4800 gene deletion strains, 20 gene deletion strains were sensitive to Ech A in an iron‐dependent manner. These genes were over‐represented in the cellular response to oxidative stress, suggesting that Ech A suppressed growth inhibition caused by oxidative stress. Unexpectedly, genes integral to cardiolipin and inositol phosphate biosynthesis were required for Ech A bioactivity. Overall, these results identify genes, proteins, and cellular processes mediating the bioactivity of Ech A. Moreover, we demonstrate unbiased genomic and proteomic methodology that will be useful for characterizing bioactive compounds in food and food waste. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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3. Magnetic resonance imaging shows spinal curvature in Chinook salmon (Oncorhynchus tshawytscha) is associated with chronic inflammation of peri‐vertebral soft tissues.
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Lovett, Bailey A., Firth, Elwyn C., Perrott, Matthew R., Munday, John S., Pontre, Beau P., Lydon, Anna‐Maria P., Symonds, Jane E., Preece, Mark A., and Herbert, Neill A.
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SPINAL curvatures ,MAGNETIC resonance imaging ,CHINOOK salmon ,SOFT tissue injuries ,CONNECTIVE tissues ,INFLAMMATION - Abstract
Chinook salmon (Oncorhynchus tshawytscha) farmed in New Zealand are known to develop abnormal spinal curvature late in seawater production. Its cause is presently unknown, but there is evidence to suggest a neuromuscular pathology. Using magnetic resonance imaging (MRI), we evaluated the relationship between soft tissue pathology and spinal curvature in farmed Chinook salmon. Regions of interest (ROIs) presenting as pathologic MRI signal hyper‐intensity were identified from scans of 24 harvest‐sized individuals: 13 with radiographically‐detectable spinal curvature and 11 without. ROIs were excised from individuals using anatomical landmarks as reference points and histologically analysed. Pathologic MRI signal was observed more frequently in individuals with radiographic curvature (92%, n = 12) than those without (18%, n = 2), was localized to the peri‐vertebral connective tissues and musculature, and presented as three forms: inflammation, fibrosis, or both. These pathologies are consistent with a chronic inflammatory process, such as that observed during recovery from a soft tissue injury, and suggest spinal curvature in farmed Chinook salmon may be associated with damage to and/or compromised integrity of the peri‐vertebral soft tissues. Future research to ascertain the contributing factors is required. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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4. Parenting Practices and Parenting Program Preferences of Chinese Immigrant Parents in New Zealand.
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Wei, Yun, Keown, Louise J., Franke, Nike, and Sanders, Matthew R.
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IMMIGRANTS ,PARENT attitudes ,STATISTICS ,SOCIAL support ,RESEARCH methodology ,INTERVIEWING ,PARENTING ,SELF-efficacy ,RESEARCH funding ,DESCRIPTIVE statistics ,QUESTIONNAIRES ,NEEDS assessment ,STATISTICAL sampling ,DATA analysis software ,DATA analysis ,PARENTS - Abstract
Participation in evidence-based parenting programs benefits parents and children, but these programs have limited reach. This study utilized a mixed-method design to investigate the parenting concerns and parenting program needs of Chinese immigrant parents in New Zealand. Parents (n = 159) were surveyed about their perceived levels of child adjustment problems, parenting confidence, and parenting risk and protective factors. Parents' knowledge and experience with parenting programs, and their program preferences were also examined. Eight Chinese parenting practitioners were interviewed about parenting challenges, parental concerns, and barriers to program participation of Chinese immigrant parents. Survey results showed that parents who gave their child higher ratings on behavior problems reported less parental self-efficacy, and more parental adjustment, family relationship, teamwork, and parenting difficulties. Parents' knowledge and experience of available parenting programs was low. Barriers to program participation included time constraints, lack of program awareness, cultural and language barriers, and no childcare provision. Parents indicated a preference for a range of delivery options including group-based, seminar, and individually tailored programs. Program features most likely to influence attendance were content that addresses personally relevant issues and children's self-development (such as coping with failure, managing negative emotions, and increasing confidence), and convenient location of program. Practitioners indicated that managing difficult child behavior and maintaining positive parent-child relationships were key parenting challenges. These concerns were linked to cultural expectations about child obedience, academic performance, and parent/grandparent relationships. Findings highlight program preferences that could be offered to meet Chinese immigrant parenting support needs and increase program participation. Highlights: Parents and practitioners highlighted challenges, concerns, and needs of Chinese immigrant parents. Parents who gave higher child behavior problems ratings reported more parenting and family relationship difficulties. Identified parenting program, delivery, and content options that could meet Chinese immigrant parenting support needs. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Reproductive biology of male common dolphins (Delphinus delphis) in New Zealand waters.
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Palmer, Emily I., Betty, Emma L., Murphy, Sinéad, Perrott, Matthew R., Smith, Adam N. H., and Stockin, Karen A.
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DOLPHINS ,ANTHROPOGENIC effects on nature ,BIOLOGY ,MALES ,MALE reproductive organs ,TESTIS - Abstract
Reproductive parameters were assessed in 64 male common dolphins (Delphinus delphis) examined post-mortem from strandings and bycatch in New Zealand between 1999 and 2020. The stages of male sexual maturation were assessed using morphological measurements and histological examination of testicular tissue. Age was determined via growth layer groups (GLGs) in teeth. The average age (ASM) and length (LSM) at attainment of sexual maturity were estimated to be 8.8 years and 198.3 cm, respectively. Individual variation in ASM (7.5–10 years) and LSM (190–220 cm) was observed in New Zealand common dolphins. However, on average, sexual maturity was attained at a similar length but at a marginally younger age (< 1 year) in New Zealand compared to populations in the Northern Hemisphere. All testicular variables proved better predictors of sexual maturity compared to demographic variables (age and total body length), with combined testes weight the best outright predictor of sexual maturity. Reproductive seasonality was observed in male common dolphins, with a significant increase in combined testes weight in austral summer. This aligns with most other studied populations, where seasonality in reproduction is typically observed. Given the known anthropogenic impacts on New Zealand common dolphins, we recommend that these findings be used as a baseline from which to monitor population-level changes as part of conservation management efforts. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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6. How does the clinical practice of Aotearoa New Zealand podiatrists align with international guidelines for the prevention of diabetes-related foot disease? A cross-sectional survey.
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Jepson, Hannah, Lazzarini, Peter A, Garrett, Michele, and Carroll, Matthew R
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FOOT diseases ,FOOT ,PODIATRISTS ,MANN Whitney U Test ,PEOPLE with diabetes ,DIABETIC foot - Abstract
Background: Given the importance of preventive care for the lower limb in people with diabetes, and the absence of local guidelines in Aotearoa New Zealand (NZ), the aim of this study was to determine the alignment of assessment and management used in the prevention of diabetes-related foot disease by NZ podiatrists to the international prevention guideline recommendations. Methods: A 37-item web-based survey was developed using a 5-point Likert scale (0 = always; 5 = never) based on the International Working Group of the Diabetic Foot (IWGDF) 2019 prevention guidelines and included domains on participant demographics, sector, caseloads, guidelines, screening, management, education, and referral. The survey was distributed to NZ podiatrists through the NZ podiatry association and social media. Participants completing > 50% of items were included. The Mann-Whitney U test was used to examine differences between sector subgroups. Results: Seventy-seven responses (16.3% of the NZ podiatry workforce) were received, of which 52 completed > 50% of items and were included. Of those 52 podiatrists, 73% were from the private sector. Public sector podiatrists reported higher weekly caseloads of patients with diabetes (p = 0.03) and foot ulcers (p < 0.001). The New Zealand Society for the Study of Diabetes (NZSSD) risk stratification pathway and IWGDF guidelines were the two most frequently utilised guidance documents. Participants reported median scores of at least "often" (< 2) for all items in the assessment and management, inspection, examination, and education provision domains for people with a high-risk foot. More than 50% of respondents reported screening more frequently than guideline recommendations for people with a very low to moderate risk foot. Structured education program was only used by 4 (5%) participants. Public sector podiatrists reported greater provision of custom-made footwear (p = 0.04) and multi-disciplinary team care (p = 0.03). Conclusion: NZ podiatrists generally follow international guideline recommendations with respect to screening, self-care education, appropriate footwear, and treatment of risk factors for people at-risk of diabetes-related foot disease. However there may be over-screening of people with very low to medium risk occurring in clinical practice. Increasing access to integrated healthcare, custom-made footwear and structured educational programmes appear to be areas of practice that could be developed in future to help prevent diabetes-related foot disease in NZ. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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7. A review of the nutritional requirements of chinook salmon (Oncorhynchus tshawytscha).
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Araujo, Bruno C., Symonds, Jane E., Glencross, Brett D., Carter, Chris G., Walker, Seumas P., and Miller, Matthew R.
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NUTRITIONAL requirements ,CHINOOK salmon ,RAINBOW trout ,SALMON farming ,FISH productivity ,ATLANTIC salmon - Abstract
Chinook salmon (Oncorhynchus tshawytscha), also referred to as King salmon, is a premium aquaculture species farmed in New Zealand and to a small extent in western Canada. Despite the high research investment in the 50s and 60s, literature on nutrition on chinook salmon from recent years is sparse, particularly when compared to other salmonid aquaculture species, such as Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). To improve fish productivity, it is essential to provide specific and efficient diets based on satisfying chinook salmon requirements for nutrients and energy and adapting these to life-stage, season, and production variables. Diet specifications for chinook salmon have to date largely been based on knowledge derived from other salmonid species and may not be optimised for chinook salmon. Thus, there is a lack of knowledge in some fundamental areas. This review explores the production status and literature related to the macro and micronutrient requirements, and general nutrition of chinook salmon. In doing so it compares these requirements to other farmed salmonids to understand some of the differences between species and highlights the main gaps in the literature. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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8. The Effectiveness of Group Triple P for Chinese Immigrant Parents of School Age Children Living in New Zealand.
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Wei, Yun, Keown, Louise J., Franke, Nike, and Sanders, Matthew R.
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SCHOOL children ,RANDOMIZED controlled trials ,SATISFACTION ,FAMILY relations - Abstract
The study was a randomised controlled trial evaluating the effectiveness of the Group Triple P Program for Chinese immigrant parents living in New Zealand. Sixty-seven Chinese immigrant parents of a 5- to 9-year-old child with disruptive behaviour problems were randomly allocated to either an intervention or a waitlist group. Parents completed measures of child adjustment problems, general parenting practices, parenting practices in children's academic lives, parental adjustment, parental teamwork, and family relationships at pre-, post-, and 4-month follow-up. Intervention group ratings of programme satisfaction were collected following programme completion. Significant short-term intervention effects were found for improvements in child behaviour, parenting practices, parental teamwork, and parenting in the child academic context. All intervention effects, except for parental teamwork, were maintained at 4-month follow-up. There were no significant intervention effects for parental adjustment, however, medium effect sizes were found at post-intervention and follow-up. A high level of programme satisfaction was reported. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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9. Mixed yeast communities contribute to regionally distinct wine attributes.
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Hawkins, Diana Lynne, Ryder, Jess, Lee, Soon A, Parish‐Virtue, Katie, Fedrizzi, Bruno, Goddard, Matthew R, and Knight, Sarah J
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PINOT noir ,COMMUNITIES ,SAUVIGNON blanc ,GAS chromatography/Mass spectrometry (GC-MS) ,YEAST ,WINES ,TERROIR - Abstract
There is evidence that vineyard yeast communities are regionally differentiated, but the extent to which this contributes to wine regional distinctiveness is not yet clear. This study represents the first experimental test of the hypothesis that mixed yeast communities—comprising multiple, region-specific, isolates, and species—contribute to regional wine attributes. Yeast isolates were sourced from uninoculated Pinot Noir fermentations from 17 vineyards across Martinborough, Marlborough, and Central Otago in New Zealand. New methodologies for preparing representative, mixed species inoculum from these significantly differentiated regional yeast communities in a controlled, replicable manner were developed and used to inoculate Pinot Noir ferments. A total of 28 yeast-derived aroma compounds were measured in the resulting wines via headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry. Yeast community region of origin had a significant impact on wine aroma, explaining ∼10% of the observed variation, which is in line with previous reports of the effects of region-specific Saccharomyces cerevisiae isolates on Sauvignon Blanc ferments. This study shows that regionally distinct, mixed yeast communities can modulate wine aroma compounds in a regionally distinct manner and are in line with the hypothesis that there is a microbial component to regional distinctiveness, or terroir, for New Zealand Pinot Noir. This study shows that mixed yeast communities of vineyards impact wine aroma in a regionally distinct manner in New Zealand Pinot Noir. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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10. Reproductive biology of female common dolphins (Delphinus delphis) in New Zealand waters.
- Author
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Palmer, Emily I., Betty, Emma L., Murphy, Sinéad, Perrott, Matthew R., Smith, Adam N. H., and Stockin, Karen A.
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BIOLOGY ,DOLPHINS ,PREY availability ,SPRING ,OVULATION ,INDUCED ovulation - Abstract
Reproductive biology was assessed in 106 female common dolphins (Delphinus delphis) examined post-mortem from stranding and bycatch events along the New Zealand coastline between 1997 and 2019. The average age (ASM) and length (LSM) at sexual maturity was estimated at 7.5 years and 183.5 cm, respectively. The total number of corpora in mature individuals increased with age and appeared to persist throughout life. Ovarian asymmetry was apparent, with the left ovary displaying higher rates of ovulation, and a maximum of 19 corpora recorded for a 24-year-old female. The estimated ovulation and annual pregnancy rates for mature females were 0.39 year
−1 and 30%, respectively. Conception and calving occurred year-round, with a weak seasonal increase observed in late austral spring and early austral summer. As these data did not clearly show whether seasonality was present, the gestation, lactation, and resting periods were calculated as either 12.6 or 12.8 months based on the presence/absence of seasonality, respectively. Similarly, calving interval ranged from 3.15 to 3.2 years, depending upon whether seasonality was considered. The estimated LSM of the New Zealand population aligns with other populations globally, although the estimated ASM is younger by approximately 6 months. Other reproductive parameters align with Northern Hemisphere populations, although demonstrate variation, which may reflect adaptations to local conditions such as water temperature and prey availability. As the species is subject to anthropogenic impacts including pollution and bycatch, we suggest our findings be used as a baseline with which to monitor trends in population parameters. [ABSTRACT FROM AUTHOR]- Published
- 2022
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11. Revival of Philozoon Geddes for host-specialized dinoflagellates, 'zooxanthellae', in animals from coastal temperate zones of northern and southern hemispheres.
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LaJeunesse, Todd C., Wiedenmann, Joerg, Casado-Amezúa, Pilar, D'Ambra, Isabella, Turnham, Kira E., Nitschke, Matthew R., Oakley, Clinton A., Goffredo, Stefano, Spano, Carlos A., Cubillos, Victor M., Davy, Simon K., and Suggett, David J.
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COASTS ,DINOFLAGELLATES ,SYMBIODINIUM ,ZOOXANTHELLA ,SCLERACTINIA ,SEA anemones ,ALCYONACEA - Abstract
The dinoflagellate family Symbiodiniaceae comprises numerous genera and species with large differences in diversity, ecology and geographic distribution. An evolutionarily divergent lineage common in temperate symbiotic cnidarians and designated in the literature by several informal names including 'temperate–A', A
I , Phylotype A´ (A-prime) and 'Mediterranean A', is here assigned to the genus Philozoon. This genus was proposed by Geddes (1882) in one of the earliest papers that recognized 'yellow cells' as distinct biological entities separate from their animal and protist hosts. Using phylogenetic data from nuclear (rDNA), chloroplast (cp23S) and mitochondrial genes (cob and cox1), as well as morphology (cell size), ecological traits (host affinity) and geographic distributions, we emend the genus Philozoon Geddes and two of its species, P. medusarum and P. actiniarum, and describe six new species. Each symbiont species exhibits high host fidelity for particular species of sea anemone, soft coral, stony coral and a rhizostome jellyfish. Philozoon is most closely related to Symbiodinium (formerly Clade A), but, unlike its tropical counterpart, occurs in hosts in shallow temperate marine habitats in northern and southern hemispheres including the Mediterranean Sea, north-eastern Atlantic Ocean, eastern Australia, New Zealand and Chile. The existence of a species-diverse lineage adapted to cnidarian hosts living in high latitude habitats with inherently wide fluctuations in temperature calls further attention to the ecological and biogeographic reach of the Symbiodiniaceae. HIGHLIGHTS A dinoflagellate genus symbiotic with temperate invertebrates is characterized and named using a discarded taxonomic term revived from the golden age of Natural Historians. The work highlights how animal–algal mutualisms are evolved to thrive under a broad range of environmental conditions. [ABSTRACT FROM AUTHOR]- Published
- 2022
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12. Pólya‐gamma data augmentation and latent variable models for multivariate binomial data.
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Holmes, John B., Schofield, Matthew R., and Barker, Richard J.
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LATENT variables ,DATA augmentation ,LATENT structure analysis ,GIBBS sampling ,FACTOR analysis ,LOGISTIC regression analysis - Abstract
New Zealand police has long been suspected of systematic bias against the indigenous Māori. One resource available to investigate this possibility is the annual counts of police apprehensions and prosecutions, by offence type. However, model specification/fitting is complicated as these data are constrained counts, interdependent and multivariate. For example, there are limited options for factor models beyond continuous or binary data. This is a serious limitation for in our dataset, while measurements are clustered, different individuals are measured at each variable. Focusing on principal component/factor analysis representations, we show that under the canonical logit link, latent variable models can be fitted via Gibbs sampling, to multivariate binomial data of arbitrary trial size by applying Pólya‐gamma augmentation to the binomial likelihood. We demonstrate that this modelling approach, by incorporating shrinkage, will produce a fit with lower mean square error than techniques based on deviance minimization commonly employed for binary datasets. By exploring theoretical properties of the proposed models, we demonstrate a larger range of latent structures can be estimated and the presence of hidden replication improves prediction when data are multivariate binomial, which gives us greater flexibility for investigating associations between ethnicity and prosecution probability. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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13. Review of life history parameters and preliminary age estimates of some New Zealand deep-sea fishes.
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McMillan, Peter J., Hart, Alan C., Horn, Peter L., Tracey, Dianne M., Ó Maolagáin, Caoimhghin, Finucci, Brittany, and Dunn, Matthew R.
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DEEP-sea fishes ,OTOLITHS ,LIFE history theory ,OSTEICHTHYES ,BYCATCHES ,FISH age ,CARBON isotopes - Abstract
A literature review on longevity of New Zealand deep-sea fishes provided life history parameter estimates for 17 bony and five cartilaginous species. Preliminary age estimates for a further nine deep-sea bony fishes were made from otolith zone counts and included results from a pilot analysis of radiocarbon age estimates from the otoliths of three of the species. Radiocarbon age estimates corroborated the otolith zone count age estimates made for white rattail (Trachyrincus aphyodes) and smallhead cod (Lepidion microcephalus) but were substantially lower for the third species, smallscale brown slickhead (Alepocephalus antipodianus) which suggested that it was not exposed to elevated (near-surface) levels of
14 C in early life. Validation of otolith zone age estimates is difficult for deep-sea species but the radiocarbon analysis provided a practical method to corroborate age estimates for some bony fishes. Of the 31 fish in this study (known and new age estimates), five of the fishery target species and 10 of the bycatch were long-lived (50 years or more). The hypothesis that all New Zealand deep-sea species are long-lived was not supported, but the chance of a species being long-lived seem to be higher in deeper water. [ABSTRACT FROM AUTHOR]- Published
- 2021
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14. Green-lipped (greenshell™) mussel (Perna canaliculus) extract supplementation in treatment of osteoarthritis: a systematic review.
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Abshirini, Maryam, Coad, Jane, Wolber, Frances M., von Hurst, Pamela, Miller, Matthew R., Tian, Hong Sabrina, and Kruger, Marlena C.
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VISUAL analog scale ,PERNA ,MUSSELS ,OSTEOARTHRITIS ,ANALGESIA - Abstract
Objectives: Intervention studies using New Zealand green-lipped or greenshell™ mussel (GSM) (Perna canaliculus) extract in osteoarthritis (OA) patients have shown effective pain relief. This systematic review summarises the efficacy of GSM extracts in the treatment of OA. Methods: A literature search of the three databases EMBASE, MEDLINE, and Scopus was performed to identify relevant articles published up to March 2020. Inclusion criteria were clinical trials published in English measuring the effect of supplementation of whole or a lipid extract from GSM on pain and mobility outcomes in OA patients. Results: A total of nine clinical trials were included in systematic review, from which five studies were considered appropriate for inclusion in a forest plot. Pooled results showed that GSM extracts (lipid extract or whole powder) provide moderate and clinically significant treatment effects on a visual analogue scale (VAS) pain score (effect size: − 0.46; 95% CI − 0.82 to − 0.10; p = 0.01). The whole GSM extract improved gastrointestinal symptoms in OA patients taking anti-inflammatory medications. The GSM extract was considered to be generally well tolerated in most of the studies. Conclusion: The overall analysis showed that GSM provided moderate and clinically meaningful treatment effects on OA pain. However, the current evidence is limited by the number and quality of studies, and further larger and high-quality studies are needed to confirm the effectiveness and to identify the optimal GSM format. Nevertheless, it is worth considering using GSM extracts especially for patients seeking alternative pain relief treatments with fewer side effects compared to conventional treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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15. Effect of GreenshellTM mussel on osteoarthritis biomarkers and inflammation in healthy postmenopausal women: a study protocol for a randomized double-blind placebo-controlled trial.
- Author
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Abshirini, Maryam, Coad, Jane, Wolber, Frances M., von Hurst, Pamela, Miller, Matthew R., Tian, Hong Sabrina, and Kruger, Marlena C.
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POSTMENOPAUSE ,RESEARCH protocols ,DUAL-energy X-ray absorptiometry ,ADIPOSE tissues ,FOOD consumption ,CLIMACTERIC ,BODY mass index ,PERNA ,KNEE osteoarthritis ,INFLAMMATION ,RANDOMIZED controlled trials ,BLIND experiment ,MOLLUSKS - Abstract
Background: New Zealand Greenshell™ mussels (GSM; Perna canaliculus) have recently been shown to decrease cartilage degradation in a rat model of induced metabolic osteoarthritis (MetOA). However, this effect has not been investigated in human subjects. This study aims to determine the effect of GSM powder on biomarkers of cartilage metabolism, bone resorption, and inflammation in New Zealand healthy overweight/obese postmenopausal women who are at early stage or at high risk of OA.Method: Fifty overweight or obese (BMI 25-35 kg/m2) postmenopausal women (aged 55-75 years) will be recruited by advertisement. Participants will be randomized based on a double-blind randomization schedule and stratified randomization based on BMI and age distribution. The participant will be assigned with a 1:1 allocation ratio to receive 3 g/d whole meat GSM powder or placebo (sunflower seed protein) for 12 weeks. Data on socio-demographics, physical activity, and dietary intake will be collected for each subject. Cartilage turnover biomarkers [(C-telopeptide of type II collagen (CTX-II), C-propeptide of type II procollagen (CPII), Cartilage oligomeric matrix protein (COMP)], and bone resorption marker (CTX-I) will be measured in blood and urine samples. Inflammatory status (hs-CRP and cytokine panel) will be assessed and iron status will be measured. Body composition including fat mass (FM), lean mass (LM), and fat percentage will be measured using dual-energy X-ray absorptiometry (DXA). Joint pain and knee function will be assessed using a 100-mm visual analog scale (VAS) and the Knee Injury and Osteoarthritis Outcome Score (KOOS) questionnaire, respectively.Discussion: This trial will be the first to explore the effects of whole meat GSM powder on cartilage turnover, bone resorption, and inflammation biomarkers in overweight/obese postmenopausal women. The results from this trial will provide evidence on the efficacy of GSM in the prevention of OA.Trial Registration: Australian New Zealand Clinical Trials Registry (ANZCTR) ACTRN12620000413921p . Registration on 27 March 2020. [ABSTRACT FROM AUTHOR]- Published
- 2021
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16. Iatrogenic uvular injury related to airway instrumentation: A report of 13 cases from the webAIRS database and a review of uvular necrosis following inadvertent uvular injury.
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Bright, Matthew R, Concha Blamey, Sandra I, Beckmann, Linda A, and Culwick, Martin D
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CONSERVATIVE treatment , *IATROGENIC diseases , *WOUNDS & injuries , *SYMPTOMS , *DYSPNEA , *NECROSIS , *ANESTHESIA , *INTERNET , *SURGICAL complications , *LARYNGEAL masks , *UVULA , *RISK management in business , *PHARYNGITIS - Abstract
Published reports of uvular necrosis are uncommon and it is possibly an under-reported complication of oropharyngeal manipulation. Uvular necrosis is thought to develop due to ischaemia secondary to mechanical compression of the uvula from oropharyngeal devices. Patients typically present with symptoms of a sore throat within 48 hours postoperatively. It is unclear whether there are any preventable factors, or any specific management strategies that might reduce this complication. Treatment is most commonly conservative management, including observation and simple analgesia. We present 13 cases of uvular injury that were reported to a web-based anaesthesia incident reporting system (webAIRS), a voluntary de-identified anaesthesia incident reporting system in Australia and New Zealand. While the postoperative findings varied, sore throat was the most frequent symptom. Most of the cases resolved spontaneously; the remainder with supportive treatment only. The findings suggest that patients who sustain a uvular injury can be reassured, but they should be advised to seek review early if sore throat persists or any difficulty with breathing develops. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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17. Effects of Greenshell Mussel (Perna canaliculus) Intake on Pathological Markers of Multiple Phenotypes of Osteoarthritis in Rats.
- Author
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Siriarchavatana, Parkpoom, Kruger, Marlena C., Miller, Matthew R., Tian, Hong (Sabrina), and Wolber, Frances M.
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PERNA ,BONE density ,OSTEOARTHRITIS ,ADIPOKINES ,MUSSELS ,BODY composition ,RATS - Abstract
The prevalence of metabolic osteoarthritis has been increasing worldwide, particularly among women. The aim of this study was to investigate the effects of the New Zealand greenshell mussel (Perna canaliculus; GSM) on osteoarthritis (OA) prevention in a rat model. One-hundred-and-eight female rats aged 12 weeks were divided into four test groups, containing 24 rats each, plus an additional control group. Each test group received one of the four experimental diets: normal control diet (ND), normal control diet supplemented with GSM (ND + GSM), high fat/high sugar diet (HFHS), or high fat/high sugar diet supplemented GSM (HFHS + GSM), for 36 weeks (end of the study). After 8 weeks on experimental diets, half of each group was subjected to ovariectomy (OVX) and the remaining half received a sham operation (ovaries left intact). The study evaluated body composition, bone mass, plasma cytokines, adipokines, HbA1c, CTX-II, and knee joint's histopathology. HFHS diet and OVX significantly induced body weight gain and leptin production. OVX rats lost bone mineral density but increased adiponectin, HbA1C, and MCP-1. The OVX rats fed HFHS showed the highest Mankin scores. Importantly, inclusion of GSM reduced these pathological features. In conclusion, GSM might be beneficial in halting the progression of OA. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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18. A spatial open‐population capture‐recapture model.
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Efford, Murray G. and Schofield, Matthew R.
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POISSON processes , *POINT processes , *LARVAL dispersal , *PROBABILITY theory , *DETECTORS , *DISPERSAL (Ecology) - Abstract
A spatial open‐population capture‐recapture model is described that extends both the non‐spatial open‐population model of Schwarz and Arnason and the spatially explicit closed‐population model of Borchers and Efford. The superpopulation of animals available for detection at some time during a study is conceived as a two‐dimensional Poisson point process. Individual probabilities of birth and death follow the conventional open‐population model. Movement between sampling times may be modeled with a dispersal kernel using a recursive Markovian algorithm. Observations arise from distance‐dependent sampling at an array of detectors. As in the closed‐population spatial model, the observed data likelihood relies on integration over the unknown animal locations; maximization of this likelihood yields estimates of the birth, death, movement, and detection parameters. The models were fitted to data from a live‐trapping study of brushtail possums (Trichosurus vulpecula) in New Zealand. Simulations confirmed that spatial modeling can greatly reduce the bias of capture‐recapture survival estimates and that there is a degree of robustness to misspecification of the dispersal kernel. An R package is available that includes various extensions. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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19. Diet of six deep‐sea grenadiers (Macrouridae).
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Stevens, Darren W., Dunn, Matthew R., Pinkerton, Matthew H., and Bradford‐Grieve, Janet M.
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- *
GROUNDFISHES , *SIZE of fishes , *GASTROINTESTINAL contents , *CALANOIDA , *FISH nutrition , *MYSIDAE , *FORAGING behavior - Abstract
Feeding habits of six deep‐sea demersal trawl‐caught macrourids on Chatham Rise, New Zealand, were examined from stomach contents during the austral summer. Three species were predominantly benthic foragers: smallbanded rattail Coelorinchus parvifasciatus on small epifaunal crustaceans, twosaddle rattail Coelorinchus biclinozonalis on epifaunal decapods and humpback rattail Coryphaenoides dossenus on benthic fishes and epifaunal decapods. Three species were predominantly benthopelagic foragers: banded rattail Coelorinchus fasciatus on hyperiid and gammarid amphipods and calanoid copepods, blackspot rattail Lucigadus nigromaculatus on small epifaunal crustaceans and suprabenthic mysids and Mahia rattail Coelorinchus matamua on epifaunal decapods and calanoid copepods. The most important predictors of diet variability were identified using distance‐based linear models and included areal predictors in C. parvifasciatus, L. nigromaculatus and C. dossenus, fish size in C. dossenus, C. biclinozonalis and C. matamua, sample year in C. biclinozonalis and C. fasciatus and depth in C. matamua. Results are compared with previously published data for four other macrourid species from the same study area. The 10 grenadier species comprise benthic, benthopelagic and mesopelagic foraging guilds. This study brings the number of grenadier species for which diet on Chatham Rise has been described in detail to 12. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
20. Vertebral fusions in farmed Chinook salmon (Oncorhynchus tshawytscha) in New Zealand.
- Author
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Davie, Peter S., Walker, Seamus P., Perrott, Matthew R., Symonds, Jane E., Preece, Mark, Lovett, Bailey A., and Munday, John S.
- Subjects
CHINOOK salmon ,FISH tagging ,ATLANTIC salmon ,SEAWATER ,VERTEBRAE ,ISOTOPIC fractionation - Abstract
Vertebral fusions are an established economic concern in farmed Atlantic salmon, but have not been studied in detail in farmed Chinook salmon. Two radiographic studies of vertebral fusions were performed in farmed Chinook salmon. Sixteen of 1,301 (1.2%) smolt and 201 of 2,636 (7.6%) harvest fish had fusions. There were no significant differences in the number of fused vertebrae/fusion in smolt compared with harvest fish. Secondly, tagged fish were repeatedly radiographed to determine the progression of the fusions. Nineteen (4.4%), 23 (5.3%) and 39 (9.0%) fish had fusions as smolt, after 129 days in sea water, and at harvest, respectively. There were no significant differences in the average number of vertebra/fusion between the three time points. Of the fusions that were observed in smolt, additional vertebra did not become fused in 81% of the lesions. Within the rare fusions that did progress due to the involvement of adjacent vertebra, an average of 1.6 vertebrae were added per year. Fish with fusions were significantly lighter than non‐affected fish at harvest. Fusions are common in farmed Chinook salmon; however, they are typically stable after development. As fish with fusions were lighter at harvest, reducing fusions may have an economic benefit. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
21. The International Parenting Survey: Rationale, Development, and Potential Applications.
- Author
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Morawska, Alina, Filus, Ania, Haslam, Divna, and Sanders, Matthew R.
- Subjects
CHILD development ,CHILD behavior ,TEST validity ,EXPERIMENTAL design ,RESEARCH methodology ,PARENT-child relationships ,PSYCHOMETRICS ,QUESTIONNAIRES ,RESEARCH evaluation ,SELF-efficacy ,SURVEYS ,PARENT attitudes ,PARENTING education - Abstract
The quality of parent-child interactions and family relationships has a powerful influence on children's development and well-being. The International Parenting Survey (IPS) is a brief, web-based survey developed to provide a cross-national, community-level, population snapshot of the experiences of parents related to raising children. The IPS was developed as a planning tool to assist policy makers and community agencies plan, implement, and evaluate parenting programs and as a tracking tool to evaluate parenting support programs in different countries. We report the preliminary psychometric properties of the IPS on various domains of measurement in an international sample of over 9,000 parents. Moderate to high reliabilities were obtained for all domains of measurement. High internal consistency reliabilities (α = .88-.97) were obtained for the domains of children's behavior and emotional maladjustment, for parental self-efficacy, parental distress and parental beliefs. Moderate levels of reliabilities (α = .52-.83) were obtained for domains of parental consistency, coercive parenting, positive encouragements, and parent-child relationships. Overall, the measure appears to have satisfactory reliability justifying further psychometric validation studies in population level studies of parenting. Examples of uses of the IPS are described and directions for future research and policy explored. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
22. From data compilation to model validation: a comprehensive analysis of a full deep-sea ecosystem model of the Chatham Rise.
- Author
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McGregor, Vidette L., Horn, Peter L., Fulton, Elizabeth A., and Dunn, Matthew R.
- Subjects
MODEL validation ,FISHERIES ,FISHERY management ,DATA modeling ,ECOSYSTEMS ,POPULATION dynamics - Abstract
The Chatham Rise is a highly productive deep-sea ecosystem that supports numerous substantial commercial fisheries, and is a likely candidate for an ecosystem based approach to fisheries management in New Zealand. We present the first end-to-end ecosystem model of the Chatham Rise, which is also to the best of our knowledge, the first end-to-end ecosystem model of any deep-sea ecosystem. We describe the process of data compilation through to model validation and analyse the importance of knowledge gaps with respect to model dynamics and results. The model produces very similar results to fisheries stock assessment models for key fisheries species, and the population dynamics and system interactions are realistic. Confidence intervals based on bootstrapping oceanographic variables are produced. The model components that have knowledge gaps and are most likely to influence model results were oceanographic variables, and the aggregate species groups 'seabird' and 'cetacean other'. We recommend applications of the model, such as forecasting biomasses under various fishing regimes, include alternatives that vary these components. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
23. Rattail lebensspuren: Feeding impressions from deep-sea grenadiers.
- Author
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Stevens, Darren W., Dunn, Matthew R., Mills, V. Sadie, Bowden, David A., McMillan, Peter J., Hart, Alan C., Chin, Caroline, Davey, Niki K., and Pinkerton, Matthew H.
- Subjects
- *
SIZE of fishes , *DEEP-sea fishes , *SEDIMENTS - Abstract
Lebensspuren ('life traces') are biologically formed physical imprints or structures left behind in sediments, the origins of which are often unknown or speculative. During a biodiversity survey on Chatham Rise (a deepsea submarine ridge off SE Aotearoa New Zealand) in winter 2013, distinctive 'iron-shaped' lebensspuren, often with a central 'bitemark' where a plug of sediment had apparently been removed, were observed during towed camera transects at depths of 450–562 m. We link these impressions in soft deep-sea sediments to the head shape of grenadiers, and infer they resulted from grenadiers foraging on benthic prey. The imprints varied in shape, depth, and clarity. Two very clearly defined impressions were matched to Coelorinchus aspercephalus and C. biclinozonalis using ventral head profiles, and the size of the fish estimated. Grenadier foraging marks were frequently seen but their occurrence and densities have not yet been mapped. • Iron-shaped impressions are found in deepsea soft sediments off New Zealand. • Impressions were matched to head shapes of deep-sea fish (grenadiers). • Impressions are likely life traces ('lebensspuren') of benthic foraging grenadiers. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
24. Creating functional groups of marine fish from categorical traits.
- Author
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Ladds, Monique A., Sibanda, Nokuthaba, Arnold, Richard, and Dunn, Matthew R.
- Subjects
FUNCTIONAL groups ,MARINE fishes ,DATA structures - Abstract
Background. Functional groups serve two important functions in ecology: they allow for simplification of ecosystem models and can aid in understanding diversity. Despite their important applications, there has not been a universally accepted method of how to define them. A common approach is to cluster species on a set of traits, validated through visual confirmation of resulting groups based primarily on expert opinion. The goal of this research is to determine a suitable procedure for creating and evaluating functional groups that arise from clustering nominal traits. Methods. To do so, we produced a species by trait matrix of 22 traits from 116 fish species from Tasman Bay and Golden Bay, New Zealand. Data collected from photographs and published literature were predominantly nominal, and a small number of continuous traits were discretized. Some data were missing, so the benefit of imputing data was assessed using four approaches on data with known missing values. Hierarchical clustering is utilised to search for underlying data structure in the data that may represent functional groups. Within this clustering paradigm there are a number of distance matrices and linkage methods available, several combinations of which we test. The resulting clusters are evaluated using internal metrics developed specifically for nominal clustering. This revealed the choice of number of clusters, distance matrix and linkage method greatly affected the overall within- and between- cluster variability. We visualise the clustering in two dimensions and the stability of clusters is assessed through bootstrapping. Results. Missing data imputation showed up to 90% accuracy using polytomous imputation, so was used to impute the real missing data. A division of the species information into three functional groups was the most separated, compact and stable result. Increasing the number of clusters increased the inconsistency of group membership, and selection of the appropriate distance matrix and linkage method improved the fit. Discussion. We show that the commonly used methodologies used for the creation of functional groups are fraught with subjectivity, ultimately causing significant variation in the composition of resulting groups. Depending on the research goal dictates the appropriate strategy for selecting number of groups, distance matrix and clustering algorithm combination. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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- View/download PDF
25. Vertebral abnormalities in free-living Chinook salmon (Oncorhynchus tshawytscha, Walbaum) in New Zealand.
- Author
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Davie, Peter S., Perrott, Matthew R., De Clercq, Adelbert, Munday, John S., Walker, Seumas P., Symonds, Jane E., and Preece, Mark
- Subjects
- *
CHINOOK salmon , *SPINE abnormalities - Abstract
Spinal abnormalities are common in farmed Chinook Salmon in New Zealand. We report spinal abnormalities in adult Chinook salmon which were predominantly hatchery reared and released as smolts and which we term free-living. We compare these to rates seen in farmed New Zealand salmon. 101 free-living adult salmon were radiographically assessed for spinal curvatures (lordosis, kyphosis, scoliosis; LKS) and other vertebral abnormalities. Severity of abnormality was assessed on a three-point scale. Abnormal vertebral bodies were detected in 88.1% of free-living salmon. Spinal curvatures were the most common abnormality type with 83.2% of fish showing this abnormality but only one free-living Chinook had LKS of severity greater than 1. Farmed Chinook salmon are reported to have LKS rates of 29% with 18% of LKS abnormalities of severity greater than 1. These results suggest that free-living Chinook salmon frequently develop spinal abnormalities, but these abnormalities are less severe than those observed in farmed salmon. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
26. Dealing with Disobedience: An Evaluation of a Brief Parenting Intervention for Young Children Showing Noncompliant Behavior Problems.
- Author
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Dittman, Cassandra, Farruggia, Susan, Keown, Louise, Sanders, Matthew, Dittman, Cassandra K, Farruggia, Susan P, Keown, Louise J, and Sanders, Matthew R
- Subjects
BEHAVIOR disorders in children ,PARENTING ,PRESCHOOL children ,CONTROL groups ,FOLLOW-up studies (Medicine) ,WELL-being ,TREATMENT of behavior disorders in children ,CHILD psychopathology ,CHILD rearing ,COMPARATIVE studies ,COOPERATIVENESS ,LONGITUDINAL method ,RESEARCH methodology ,MEDICAL cooperation ,RESEARCH ,EVALUATION research ,RANDOMIZED controlled trials ,NONPROFESSIONAL education ,PSYCHOLOGY - Abstract
The study was a randomized controlled trial evaluating the efficacy of a brief and preventatively-focused parenting discussion group for dealing with disobedient behavior in preschool-aged children. Eighty-five parents with children aged between 3 and 5 years who were concerned about the noncompliant behavior of their child were recruited from Auckland, New Zealand and Brisbane, Australia. Compared to the waitlist control group (n = 40), parents in the intervention group (n = 45) reported greater improvements in disruptive child behavior, ineffective parenting practices and parenting confidence, as well as clinically significant improvements in child behavior and parenting. All of these effects were maintained at 6-month follow up. No group differences were found for parental wellbeing, inter-parental conflict and general relationship quality, although intervention parents reported improvements in parental wellbeing and inter-parental conflict at 6-month follow-up. The findings are discussed in terms of the implications for making brief and effective parenting support available to parents. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
27. Quantifying separation and similarity in a Saccharomyces cerevisiae metapopulation.
- Author
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Knight, Sarah and Goddard, Matthew R
- Subjects
- *
SACCHAROMYCETACEAE , *MICROORGANISMS , *GENE frequency , *SACCHAROMYCES cerevisiae - Abstract
Eukaryotic microbes are key ecosystem drivers; however, we have little theory and few data elucidating the processes influencing their observed population patterns. Here we provide an in-depth quantitative analysis of population separation and similarity in the yeast Saccharomyces cerevisiae with the aim of providing a more detailed account of the population processes occurring in microbes. Over 10 000 individual isolates were collected from native plants, vineyards and spontaneous ferments of fruit from six major regions spanning 1000 km across New Zealand. From these, hundreds of S. cerevisiae genotypes were obtained, and using a suite of analytical methods we provide comprehensive quantitative estimates for both population structure and rates of gene flow or migration. No genetic differentiation was detected within geographic regions, even between populations inhabiting native forests and vineyards. We do, however, reveal a picture of national population structure at scales above ∼100 km with distinctive populations in the more remote Nelson and Central Otago regions primarily contributing to this. In addition, differential degrees of connectivity between regional populations are observed and correlate with the movement of fruit by the New Zealand wine industry. This suggests some anthropogenic influence on these observed population patterns. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
28. Recommendations for the Programming of Implantable Cardioverter-Defibrillators in New Zealand
- Author
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Webber, Matthew R. and Stiles, Martin K.
- Subjects
- *
IMPLANTABLE cardioverter-defibrillators , *VENTRICULAR tachycardia , *ATRIAL flutter , *CARDIAC hypertrophy , *LEFT heart ventricle , *ATRIAL fibrillation , *MEDICAL practice , *THERAPEUTICS - Abstract
Aim: Our manuscript proposes recommendations to standardise implantable cardioverter-defibrillator (ICD) programming practice in New Zealand (NZ) and provides a review of the literature behind such an initiative. Background: Shocks have traditionally been the mainstay of ICD therapy for ventricular tachyarrhythmia. There is substantial evidence to suggest shocks may cause psychological harm, are often painful and may increase hospitalisation for heart failure. Shock therapy may be reduced by avoiding unnecessary therapy of non-sustained arrhythmia, utilising anti-tachycardia pacing to terminate ventricular tachycardia and by using algorithms to identify non-ventricular rhythms with rates overlapping therapy zones. This manuscript outlines evidence-based strategies to safely reduce unnecessary shocks from ICDs and includes manufacturer-specific parameters for ease of practical use. Conclusion: These recommendations aim to optimise programming of ICD devices in NZ. Developed from a substantial evidence base they are intended to align national programming practice in the hope that we achieve fewer hospitalisations, improved quality of life and possibly achieve greater survival for our ICD-treated patients. [Copyright &y& Elsevier]
- Published
- 2012
- Full Text
- View/download PDF
29. Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand.
- Author
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Gayevskiy, Velimir and Goddard, Matthew R
- Subjects
- *
YEAST , *FUNGAL populations , *CLIMBING plants , *WINES , *EUKARYOTES , *SACCHAROMYCES cerevisiae , *GENE flow - Abstract
Yeasts are a diverse seemingly ubiquitous group of eukaryotic microbes, and many are naturally associated with fruits. Humans have harnessed yeasts since the dawn of civilisation to make wine, and thus it is surprising that we know little of the distribution of yeast communities naturally associated with fruits. Previous reports of yeast community diversity have been descriptive only. Here we present, we believe, the first robust test for the geographic delineation of yeast communities. Humans have relatively recently employed Saccharomyces cerevisiae as a model research organism, and have long harnessed its ancient adaption to ferment even in the presence of oxygen. However, as far as we are aware, there has not been a rigorous test for the presence of regional differences in natural S. cerevisiae populations before. We combined these community- and population-level questions and surveyed replicate vineyards and corresponding spontaneous ferments from different regions on New Zealand's (NZ's) North Island and analysed the resulting data with community ecology and population genetic tests. We show that there are distinct regional delineations of yeast communities, but the picture for S. cerevisiae is more complex: there is evidence for region-specific sub-populations but there are also reasonable levels of gene flow among these regions in NZ. We believe this is the first demonstration of regional delineations of yeast populations and communities worldwide. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
30. Why does a rural background make medical students more likely to intend to work in rural areas and how consistent is the effect? A study of the rural background effect.
- Author
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Jones, Michael, Humphreys, John S., and McGrail, Matthew R.
- Subjects
CLIMATOLOGY ,COMPARATIVE studies ,CONFIDENCE intervals ,EMPLOYEE recruitment ,EPIDEMIOLOGY ,FAMILY medicine ,INTERNSHIP programs ,LONGITUDINAL method ,MEDICAL personnel ,MEDICAL students ,STUDY & teaching of medicine ,METROPOLITAN areas ,QUESTIONNAIRES ,RESEARCH funding ,RURAL conditions ,RURAL health ,SELF-evaluation ,SURVEYS ,LOGISTIC regression analysis ,DATA analysis ,SECONDARY analysis ,SOCIOECONOMIC factors - Abstract
Objective: Evidence indicates that medical graduates with a rural background are more likely to become rural doctors than those with an urban background (the rural background effect (RBE)). Exactly why this is so has rarely been studied. This study sought to identify the role of social, environmental and economic factors in addition to isolation characterising rural environments that either explain or modify the association between rural background and becoming a rural doctorrural practice intention. Design and setting: Secondary analysis of linked databases from the Medical Schools Outcomes Database (MSOD), Australian Bureau of Statistics and other government sources. Participants: Seven thousand four hundred twenty-two commencing medical students who took part in the MSOD survey and for whom external data could be linked. Results: No social, environmental or economic factor studied or isolation significantly contributed to explaining the RBE, although there is some evidence that areas of more attractive climate strengthen the RBE. However, even when the RBE is at its weakest, it remains a strong, positive predictor of attraction to rural practice. Conclusion: Why the RBE occurs remains unexplained. Evidence was found of a reduced RBE under certain climatic conditions and personal circumstances, but further work is required to better understand why rural background is so strongly related with rural medical intention and practice. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
31. Monoamine oxidase inhibitory activity in tobacco smoke varies with tobacco type.
- Author
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Lewis, Amy J., Truman, Penelope, Hosking, Matthew R., and Miller, John H.
- Subjects
ANALYSIS of variance ,ANISOTROPY ,DOSE-response relationship in biochemistry ,FLUORIMETRY ,MONOAMINE oxidase inhibitors ,NICOTINE ,RESEARCH funding ,SMOKE ,SMOKING ,TOBACCO ,PARTICULATE matter ,DESCRIPTIVE statistics - Abstract
Background It has been suggested that inhibition of monoamine oxidase (MAO) activity by components of cigarette smoke may impact on smoking addiction, but it is unclear to what extent the known MAO inhibitors in tobacco smoke cause this inhibition. Methods MAO inhibitory activity was measured in a series of tobacco particulate matter preparations from different brands of cigarette and loose-leaf tobacco commonly available in New Zealand. Results When tobacco extracts were diluted to contain a physiologically relevant nicotine concentration of 0.2µM, all samples tested inhibited MAO-A and MAO-B by between 4% and 12% in a standard assay. Per mg of nicotine, samples from factory-made cigarettes contained significantly less MAO inhibitory activity than did samples from loose-leaf tobacco. When inhibitory activity was calculated on a per mg of tar basis, there was no significant difference between loose-leaf tobaccos and factory-made cigarettes. Conclusions The present study shows that the ratio of nicotine to MAO inhibitory activity varies depending on the type of tobacco product used. The roll-your-own tobaccos tested delivered more tar and more MAO inhibitory activity per mg of nicotine than the factory made cigarettes. These findings suggest that smokers of roll-your-own tobacco may experience greater difficulty in stopping smoking. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
32. Hypotheses of Spatial Stock Structure in Orange Roughy Hoplostethus atlanticus Inferred from Diet, Feeding, Condition, and Reproductive Activity.
- Author
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Dunn, Matthew R. and Forman, Jeffrey S.
- Subjects
- *
ORANGE roughy , *ANIMAL nutrition , *HABITATS , *MOUNTAINS - Abstract
We evaluate hypotheses for meso-scale spatial structure in an orange roughy (Hoplostethus atlanticus) stock using samples collected during research trawl surveys off the east coast of New Zealand. Distance-based linear models and generalised additive models were used to identify the most significant biological, environmental, and temporal predictors of variability in diet, proportion of stomachs containing prey, standardised weight of prey, fish somatic weight, fish total weight, and reproductive activity. The diet was similar to that observed elsewhere, and varied with ontogeny, depth, and surface water temperature. Smaller sized and female orange roughy in warmer bottom water were most likely to contain food. Fish condition and reproductive activity were highest at distances more than 20 km from the summit of the hills. Trawl survey catches indicated greater orange roughy densities in hill strata, suggesting hill habitat was favoured. However, analyses of feeding, condition, and reproductive activity indicated hill fish were not superior, despite fish densities on hills being reduced by fishing which, in principle, should have reduced intra-specific competition for food and other resources. Hypotheses for this result include: (1) fish in relatively poor condition visit hills to feed and regain condition and then leave, or (2) commercial fishing has disturbed feeding aggregations and/or caused habitat damage, making fished hills less productive. Mature orange roughy were observed on both flat and hill habitat during periods outside of spawning, and if this spatial structure was persistent then a proportion of the total spawning stock biomass would remain unavailable to fisheries targeting hills. Orange roughy stock assessments informed only by data from hills may well be misleading. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
33. Greater magnitude of turnover suppression occurs earlier after treatment initiation with risedronate than alendronate
- Author
-
Allen, Matthew R., Turek, John J., Phipps, Roger J., and Burr, David B.
- Subjects
- *
DIPHOSPHONATES , *OSTEOPOROSIS treatment , *LABORATORY rabbits , *BONE remodeling , *DRUG dosage , *DRUG administration - Abstract
Abstract: Clinical data suggest that reductions in fractures associated with osteoporosis may occur sooner in patients treated with risedronate (RIS) compared to those treated with alendronate (ALN). This could be explained by differences in the time course of turnover suppression between these two bisphosphonates. To determine if differences in the onset of turnover suppression exist between RIS and ALN, female New Zealand white rabbits (total n=32) were treated with clinically relevant doses of RIS or ALN and then administered different fluorochrome labels weekly for four weeks in order to allow histological assessment of the time-course of turnover suppression. By the third week of treatment vertebral trabecular bone formation rate (BFR/BS) was significantly suppressed with RIS-treatment compared to both VEH and ALN. By the 4th week of treatment, turnover rates in RIS-treated animals remained significantly lower than in VEH-treated animals and were also lower than ALN; at this time-point ALN was significantly lower than VEH. There was no significant reduction in intra-cortical remodeling in the tibial mid-diaphysis at any time point for either RIS or ALN. This greater effect on turnover suppression with RIS early in treatment compared to ALN is likely the result of both risedronate''s greater potency on osteoclast inhibition and its lower binding affinity. Together with studies showing more rapid return toward baseline turnover following withdrawal of RIS compared to ALN, this pre-clinical study provides evidence of the differences between bisphosphonates with respect to onset and recovery of bone turnover suppression. This article is part of a Special Issue entitled Bisphosphonates. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
- View/download PDF
34. Different food preferences in four sympatric deep-sea Macrourid fishes.
- Author
-
Stevens, Darren W. and Dunn, Matthew R.
- Subjects
- *
DEEP-sea animals , *MACROURIDAE , *GADIFORMES , *FRESHWATER animals - Abstract
Feeding habits of the four most abundant deep-sea demersal trawl-caught macrourids on Chatham Rise, New Zealand, were examined from stomach contents. Two species were predominantly benthic foragers: Coelorinchus bollonsi on infaunal and epifaunal polychaetes, and C. aspercephalus on epifaunal crustaceans; and two species were predominantly mesopelagic foragers; C. oliverianus on calanoid copepods, and Lepidorhynchus denticulatus on mesopelagic crustaceans. The most important predictors of diet variability were identified using distance-based linear models and included areal predictors in all four species, fish size in C. aspercephalus, C. bollonsi and L. denticulatus, and sample year in C. bollonsi. Cluster analyses showed that the diets of C. aspercephalus and C. bollonsi were most distinct. There was a greater interspecific similarity in diet in the spatial and fish size subgroups of C. oliverianus and L. denticulatus, than at the species level. Failing to account for areal, temporal, and ontogenetic variability in diets may bias evaluations of resource competition. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
35. Saccharomyces paradoxus and Saccharomyces cerevisiae reside on oak trees in New Zealand: evidence for migration from Europe and interspecies hybrids.
- Author
-
Zhang, Hanyao, Skelton, Aaron, Gardner, Richard C., and Goddard, Matthew R.
- Subjects
SACCHAROMYCES ,SACCHAROMYCES cerevisiae ,YEAST - Abstract
Saccharomyces cerevisiae and Saccharomyces paradoxus are used as model systems for molecular, cell and evolutionary biology; yet we know comparatively little of their ecology. One niche from which these species have been isolated is oak bark. There are no reports of these species from oak in the Southern Hemisphere. We describe the recovery of both S. cerevisiae and S. paradoxus from oak in New Zealand (NZ), and provide evidence for introgression between the species. Genetic inference shows that the oak S. cerevisiae are closely related to strains isolated from NZ and Australian vineyards, but that the S. paradoxus strains are very closely related to European isolates. This discovery is surprising as the current model of S. paradoxus biogeography suggests that global dispersal is rare. We test one idea to explain how members of the European S. paradoxus population might come to be in NZ: they were transported here along with acorns brought by migrants ∼200 years ago. We show that S. paradoxus is associated with acorns and thus provide a potential mechanism for the unwitting global dispersal of S. paradoxus by humans. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
36. Diet of Two Large Sympatric Teleosts, the Ling (Genypterus blacodes) and Hake (Merluccius australis).
- Author
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Dunn, Matthew R., Connell, Amelia M., Forman, Jeff, Stevens, Darren W., and Horn, Peter L.
- Subjects
- *
NEW Zealand lobster , *OSTEICHTHYES , *GENYPTERUS blacodes , *MULTIVARIATE analysis , *CLUSTER analysis (Statistics) - Abstract
Ling and hake are tertiary consumers, and as a result both may have an important structuring role in marine communities. The diets of 2064 ling and 913 hake from Chatham Rise, New Zealand, were determined from examination of stomach contents. Ling was a benthic generalist, and hake a demersal piscivore. The diet of ling was characterised by benthic crustaceans, mainly Munida gracilis and Metanephrops challengeri, and demersal fishes, mainly Macrourids and scavenged offal from fishing vessels. The diet of hake was characterised by teleost fishes, mainly macrourids and merlucciids. Multivariate analyses using distance-based linear models found the most important predictors of diet variability were depth, fish length, and vessel type (whether the sample was collected from a commercial or research vessel) for ling, and fish length and vessel type for hake. There was no interspecific predation between ling and hake, and resource competition was largely restricted to macrourid prey, although the dominant macrourid species predated by ling and hake were different. Cluster analysis of average diet of intraspecific groups of ling and hake confirmed the persistent diet separation. Although size is a central factor in determining ecological processes, similar sized ling and hake had distinctly different foraging ecology, and therefore could influence the ecosystem in different ways, and be unequally affected by ecosystem fluctuations. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
37. The diet of deepwater sharks and the benefits of using DNA identification of prey
- Author
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Dunn, Matthew R, Szabo, Ava, McVeagh, Margaret S., and Smith, Peter J.
- Subjects
- *
FISH feeds , *DIET , *KITEFIN shark , *SHARKS , *FISH genetics , *IDENTIFICATION of fishes , *CENTROPHORUS , *GALEORHINUS galeus , *PREDATION , *PHYSIOLOGY - Abstract
Abstract: Stomachs from the sharks Dalatias licha, Centrophorus squamosus, Centroscymnus owstoni, Centroselachus crepidater, Proscymnodon plunketi, and Galeorhinus galeus were sampled from three research trawl surveys on Chatham Rise, east of New Zealand. Between 14 and 50 stomachs were examined for each species, of which 8–62% were empty. Prey were visually identified in 80 stomachs, and by DNA barcoding in a further 28 stomachs. The use of DNA methods allowed the identification of chunks of flesh found in the stomachs of D. licha and P. plunketi, and nearly doubled the rate of data accumulation for D. licha, C. squamosus, and C. owstoni. Between 84 and 223 stomachs were estimated to be needed to measure 90% of the extrapolated total prey richness. The prey of D. licha, C. squamosus, and P. plunketi were predominantly benthic or demersal fishes and cephalopods. The prey of C. owstoni and C. crepidater were predominantly mesopelagic fishes and squids. G. galeus foraged throughout the water column. Scavenging of discards from commercial fishing vessels was likely in C. squamosus, P. plunketi, and G. galeus. The diet of all species except C. crepidater was dominated by the commercially important benthopelagic species hoki Macruronus novaezelandiae. [Copyright &y& Elsevier]
- Published
- 2010
- Full Text
- View/download PDF
38. Feeding habits and niche separation among the deep-sea chimaeroid fishes Harriotta raleighana, Hydrolagus bemisi and Hydrolagus novaezealandiae.
- Author
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Dunn, Matthew R., Griggs, Lynda, Forman, Jeff, and Horn, Peter
- Subjects
FISH feeds ,ECOLOGICAL niche ,FISH digestive organs ,BENTHIC animals ,CRABS ,SEA urchins - Abstract
The article discusses research done on feeding habits and niche separation among several deep-sea chimaeroid fishes found in Chatham Rise, New Zealand, including Hydrolagus (H.) novaezealandiae, H. bemisi and Harriotta (H.) raleighana. The study procedure included the examination of the digestive tract contents of the fishes, which were fed on benthic infauna and epifauna. Results revealed that the diets of H. novaezealandiae, H. bemisi and H. raleighana were characterized by crabs and sea urchins, by crabs and polychaetes, and by polychaetes and molluscs, respectively.
- Published
- 2010
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39. A distinct population of Saccharomyces cerevisiae in New Zealand: evidence for local dispersal by insects and human-aided global dispersal in oak barrels.
- Author
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Goddard, Matthew R., Anfang, Nicole, Rongying Tang, Gardner, Richard C., and Jun, Casey
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SACCHAROMYCES cerevisiae , *ALCOHOL , *POPULATION biology , *FRUIT juices - Abstract
Humans have used S. cerevisiae to make alcoholic beverages for at least 5000 years and now this super-model research organism is central to advances in our biological understanding. Current models for S. cerevisiae suggest that its population comprises distinct domesticated and natural groups as well as mosaic strains, but we generally know little of the forces which shape its population structure. In order to test the roles that ecology and geography play in shaping the S. cerevisiae species we examined nine variable microsatellite loci in 172 strains of S. cerevisiae isolated from two spontaneous grape juice ferments, soil, flowers, apiaries and bark in New Zealand. Bayesian analysis shows that the S. cerevisiae in NZ comprise a subdivided but interbreeding population that out-crosses ∼20% of the time. Some strains contributing to spontaneous ferments cluster with NZ soil/bark isolates, but others cluster with isolates from French oak barrels. It seems some strains have been globally dispersed by humans in oak barrels while some are locally vectored by insects. These data suggest geography is more important than ecology in shaping S. cerevisiae's population structure. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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40. Routine resite of peripheral intravenous devices every 3 days did not reduce complications compared with clinically indicated resite:a randomised controlled trial.
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Rickard, Claire M., McCann, Damhnat, Munnings, Jane, and McGrail, Matthew R.
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INTRAVENOUS therapy ,CATHETERS ,CLINICAL trials ,MEDICAL research ,MEDICAL experimentation on humans - Abstract
Background: Peripheral intravenous device (IVD) complications were traditionally thought to be reduced by limiting dwell time. Current recommendations are to resite IVDs by 96 hours with the exception of children and patients with poor veins. Recent evidence suggests routine resite is unnecessary, at least if devices are inserted by a specialised IV team. The aim of this study was to compare the impact of peripheral IVD 'routine resite' with 'removal on clinical indication' on IVD complications in a general hospital without an IV team. Methods: A randomised, controlled trial was conducted in a regional teaching hospital. After ethics approval, 362 patients (603 IVDs) were randomised to have IVDs replaced on clinical indication (185 patients) or routine change every 3 days (177 patients). IVDs were inserted and managed by the general hospital medical and nursing staff; there was no IV team. The primary endpoint was a composite of IVD complications: phlebitis, infiltration, occlusion, accidental removal, local infection, and device-related bloodstream infection. Results: IVD complication rates were 68 per 1,000 IVD days (clinically indicated) and 66 per 1,000 IVD days (routine replacement) (P = 0.86; HR 1.03; 95% CI, 0.74-1.43). Time to first complication per patient did not differ between groups (KM with log rank, P = 0.53). There were no local infections or IVD-related bloodstream infections in either group. IV therapy duration did not differ between groups (P = 0.22), but more (P = 0.004) IVDs were placed per patient in the routine replacement (mean, 1.8) than the clinical indication group (mean, 1.5), with significantly higher hospital costs per patient (P < 0.001). Conclusions: Resite on clinical indication would allow one in two patients to have a single cannula per course of IV treatment, as opposed to one in five patients managed with routine resite; overall complication rates appear similar. Clinically indicated resite would achieve savings in equipment, staff time and patient discomfort. There is growing evidence to support the extended use of peripheral IVDs with removal only on clinical indication. Registration number: Australian New Zealand Clinical Trials Registry (ANZCTR) Number ACTRN12608000421336. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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- View/download PDF
41. Outpatient intravenous treatment for infective endocarditis: Safety, effectiveness and one-year outcomes.
- Author
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Amodeo, Matthew R., Clulow, Tamlin, Lainchbury, John, Murdoch, David R., Gallagher, Kate, Dyer, Amanda, Metcalf, Sarah L., Pithie, Alan D., and Chambers, Stephen T.
- Subjects
INFECTIVE endocarditis ,ANTI-infective agents ,OUTPATIENT medical care ,TREATMENT effectiveness ,HOME drug infusion therapy ,INTRAVENOUS therapy ,STAPHYLOCOCCUS aureus ,THERAPEUTICS - Abstract
Summary: Objectives: To describe the use and outcomes of outpatient antimicrobial therapy (OPAT) for infective endocarditis (IE) within the Canterbury region of New Zealand over an 8 year period. Methods: All cases of IE admitted to Christchurch Hospital were reviewed. Prospectively collected data from our OPAT service''s database and retrospective data from case notes were analysed. Results: There were 213 episodes of IE meeting modified Duke Criteria over this time. Patients received OPAT in 100 episodes. Viridans streptococci were the infecting organism in 34, Staphylococcus aureus in 27, and enterococci in 10. Adverse events were encountered in 27 episodes. Of these, 24 were related to intravenous lines, infusion devices or adverse drug reactions which resolved with change of treatment. There were 3 serious adverse events which were likely to have occurred in hospital. During 12-month follow-up there were 5 further episodes of IE and 2 deaths unlikely to be directly related to the episode of IE. Conclusions: Despite significant co-morbidities and complications, nearly half of all patients with IE, including those with disease due to S. aureus and enterococci, successfully completed their treatment as outpatients. Continuous infusion devices were successfully used in 32 patients, including 22 with disease due to S. aureus. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
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42. Fourier transform infrared (FTIR) analysis identifies microplastics in stranded common dolphins (Delphinus delphis) from New Zealand waters.
- Author
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Stockin, Karen A., Pantos, Olga, Betty, Emma L., Pawley, Matthew D.M., Doake, Fraser, Masterton, Hayden, Palmer, Emily I., Perrott, Matthew R., Nelms, Sarah E., and Machovsky-Capuska, Gabriel E.
- Subjects
PLASTIC marine debris ,MICROPLASTICS ,FOURIER transforms ,GASTROINTESTINAL contents ,MARINE debris ,ACRYLONITRILE - Abstract
Here we provide a first assessment of microplastics (MPs) in stomach contents of 15 common dolphins (Delphinus delphis) from both single and mass stranding events along the New Zealand coast between 2019 and 2020. MPs were observed in all examined individuals, with an average of 7.8 pieces per stomach. Most MPs were fragments (77%, n = 90) as opposed to fibres (23%, n = 27), with translucent/clear (46%) the most prevalent colour. Fourier transform infrared (FTIR) spectroscopy revealed polyethylene terephthalate (65%) as the most predominant polymer in fibres, whereas polypropylene (31%) and acrylonitrile butadiene styrene (20%) were more frequently recorded as fragments. Mean fragment and fibre size was 584 μm and 1567 μm, respectively. No correlation between total number of MPs and biological parameters (total body length, age, sexual maturity, axillary girth, or blubber thickness) was observed, with similar levels of MPs observed between each of the mass stranding events. Considering MPs are being increasingly linked to a wide range of deleterious effects across taxa, these findings in a typically pelagic marine sentinel species warrants further investigation. • First FTIR assessment of microplastics in South Pacific cetaceans demonstrates ubiquitous ingestion. • Polyethylene terephthalate, polypropylene, and acrylonitrile butadiene styrene were the most representative polymers. • Fragments were the most common morphotype of microplastics, with translucent microplastics most detected. • No correlation between total microplastic count and any of the measured biological parameters in dolphins was detected. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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43. Composition of Boards of Directors and Interlocks in New Zealand, 1987 to 1993.
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Fox, Mark A. and Roy, Matthew R.
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BOARDS of directors ,INTERLOCKING directorates ,ELITE (Social sciences) ,INDUSTRIAL concentration ,HEGEMONY ,PUBLIC companies ,CORPORATE governance ,INDUSTRIAL management ,CORPORATE directors - Abstract
The article examines the formal positions of all directors of public listed companies in 1987, 1990 and 1993 in New Zealand. The class hegemony theory is used as the basis for examining directors and their influence in the country's public listed companies. The findings demonstrate the existence of an elite group within the elite of all directors. It also indicate that the classification of board members into insiders and outsiders may well be imprecise. It suggests that future research using qualitative methods is likely to have further implications for resource dependence and class hegemony research.
- Published
- 1995
44. Exploring preference for, and uptake of, rural medical internships, a key issue for supporting rural training pathways.
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McGrail, Matthew R., O'Sullivan, Belinda G., Russell, Deborah J., and Rahman, Muntasirur
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- *
INTERNSHIP programs , *RURAL health services , *VOCATIONAL guidance , *HEALTH services accessibility , *MEDICAL school graduates - Abstract
Background: Improved medical care access for rural populations continues to be a major concern. There remains little published evidence about postgraduate rural pathways of junior doctors, which may have strong implications for a long-term skilled rural workforce. This exploratory study describes and compares preferences for, and uptake of, rural internships by new domestic and international graduates of Victorian medical schools during a period of rural internship position expansion.Methods: We used administrative data of all new Victorian medical graduates' location preference and accepted location of internship positions for 2013-16. Associations between preferred internship location and accepted internship position were explored including by rurality and year. Moreover, data were stratified between 'domestic graduates' (Australian and New Zealand citizens or permanent residents) and 'international graduates' (temporary residents who graduated from an Australian university).Results: Across 2013-16, there were 4562 applicants who filled 3130 internship positions (46% oversubscribed). Domestic graduates filled most (69.7%, 457/656) rural internship positions, but significantly less than metropolitan positions (92.2%, p < 0.001). Only 20.1% (551/2737) included a rural location in their top five preferences, less than for international graduates (34.4%, p < 0.001). A greater proportion of rural compared with metropolitan interns accepted a position not in their top five preferences (36.1% versus 7.4%, p < 0.001). The proportion nominating a rural location in their preference list increased across 2013-2016.Conclusions: The preferences for, and uptake of, rural internship positions by domestic graduates is sub-optimal for growing a rural workforce from local graduates. Current actions that have increased the number of rural positions are unlikely to be sufficient as a stand-alone intervention, thus regional areas must rely on international graduates. Strategies are needed to increase the attractiveness of rural internships for domestic students so that more graduates from rural undergraduate medical training are retained rurally. Further research could explore whether the uptake of rural internships is facilitated by aligning these positions with protected opportunities to continue vocational training in regionally-based or metropolitan fellowships. Increased understanding is needed of the factors impacting work location decisions of junior doctors, particularly those with some rural career intent. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
45. Type I collagen differences in farmed Chinook salmon (Oncorhynchus tshawytscha) in New Zealand.
- Author
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Perrott, Matthew R., Lovett, Bailey A., De Clercq, Adelbert, Davie, Peter S., Munday, John S., Morel, Patrick C.H., Preece, Mark A., Symonds, Jane E., Walker, Seumas P., Loo, Trevor, Norris, Gill, and Naffa, Rafea
- Subjects
- *
CHINOOK salmon , *COLLAGEN , *SALMON farming , *CONNECTIVE tissues , *MASS spectrometry - Abstract
The integrity and function of Type I collagen (Col-I), a fundamental structural molecule, is central to fish movement. Farmed Chinook salmon in New Zealand are reported to develop a late onset curvature syndrome, lordosis, kyphosis and scoliosis (LKS), associated with inflammation and fibrosis, which affects movement and product quality. To investigate if type I collagen integrity is associated with LKS, salmon from a farm with high LKS (Farm 1) were compared with a farm with low LKS (Farm 2). Representative salmon from Farm 1 and Farm 2 were harvested at 25 months of age and their physical metrics measured. Condition factor (K) was derived. White muscle samples from the abdominal and caudal regions were sampled and analysed. The properties of Col-I were determined using liquid chromatography-electrospray ionization mass spectrometry. The amount of Col-I in white muscle, inferred from hydroxy-proline [Hyp], was 0.071 and 0.130 ([Hyp (mg) / Dry sample (mg)]%) for Farm 1 and Farm 2 respectively. There was a significant (p <.0004) difference (~2-fold) in [Hyp] between farms and significant differences for all crosslinks reported below. Mature crosslinks histidinohydroxymerodesmosine (HHMD) were ~2.5-fold higher in Farm 1 salmon. Immature crosslinks were ~3-fold dihydroxylysinonorleucine (DHLNL) and >4-fold hydroxylysinonorleucine (HLNL) higher in Farm 1 salmon. Mature pyridinoline (PYR) crosslinks were readily detectable in salmon from Farm 2 but below the threshold for reliable detection in those from Farm 1. The mature crosslink of elastin, desmosine (DES), was ~1.5-fold higher in Farm 2 salmon. We have quantified Col-I in the white muscle compartment of farmed Chinook salmon and established methods to compare the crosslink profile. PYR and DHLNL crosslinks associated with myosepta were significantly different between the populations. Salmon from Farm 2 had both a higher proportion of mature PYR crosslinks and higher [Hyp], additive differences that may be of functional significance. Higher levels of crosslinks (HLNL, HHMD) associated with loose connective tissue and the extracellular matrix were seen in salmon from Farm 1 and also associated with condition factor. These results demonstrated differences in the amount of Col-I and crosslink profile of farmed Chinook salmon which could be linked with a population-based susceptibility toward LKS. The association between LKS and genetic and/or husbandry differences requires additional controlled experiments to determine these relationships more precisely. • Type I collagen (Col-I) abundance and crosslink profiles of farmed salmon populations in NZ are significantly different. • Condition factor (K) is associated with Col-I differences and may predispose salmon toward LKS curvature. • Crosslinks, chromatograms and characterization of (Col-I) reported in Chinook salmon for the first time. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
46. Fatal disseminated Anncaliia algerae myositis mimicking polymyositis in an immunocompromised patient.
- Author
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Ziad, Fouzia, Robertson, Thomas, Watts, Matthew R, Copeland, Justin, Chiu, Graham, Wang, David, Stark, Damien, Graham, Linda, Turner, Clinton, and Newbury, Richard
- Subjects
- *
MYOSITIS , *POLYMYOSITIS , *DERMATOMYOSITIS , *AUTOPSY , *IMMUNOCOMPROMISED patients , *VASTUS lateralis - Abstract
• Anncaliia algerae is a rare but life threatening microsporidial myositis in an immunocompromised patient. • Clinical presentation can mimic polymyositis. • A timely muscle biopsy can lead to diagnosis and the commencement of directed therapy which is essential for cure. We report the first New Zealand case of Anncaliia algerae myositis in a 55-year-old man with a history of psoriatic arthritis, treated with long-term immunosuppressive therapy. He resided in the city of Rotorua, which is famous for geothermal hot springs. A vastus lateralis muscle biopsy was performed to investigate the cause of an unexplained myositis. Light microscopy demonstrated a necrotizing myositis with scattered clusters of ovoid spores within the myocyte cytoplasm resembling microsporidia. DNA analysis by PCR and electron microscopy confirmed microsporidial myositis with features characteristic of A. algerae. Immunosuppressive drugs were stopped and the patient was treated with cholestyramine wash and albendazole. The patient deteriorated with involvement of bulbar and respiratory muscles requiring intensive care and ventilation. He died 3 weeks after diagnosis. Post-mortem examination of skeletal muscle from tongue and intercostal muscles also revealed numerous organisms confirming disseminated disease. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
47. Harvest control rules for a sustainable orange roughy fishery.
- Author
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Doonan, Ian J., Fu, Dan, and Dunn, Matthew R.
- Subjects
- *
ORANGE roughy fisheries , *SUSTAINABLE fisheries , *DEEP-sea fisheries , *HARVESTING , *BIOMASS , *FISHERY management - Abstract
Some of the best described examples of unsustainable deep-sea fisheries have been for the orange roughy, Hoplostethus atlanticus . Nevertheless, fisheries for orange roughy around New Zealand have persisted for more than 30 years, and some stocks that were overfished and substantially depleted now appear to be recovering. Scientific advice on the status of New Zealand orange roughy stocks has historically used population models fitted to various observational data, but this approach has proved problematic, largely due to uncertainty in recruitment, to the extent that from 2008 these models were replaced by a simple harvest control rule (HCR). The catches taken under this HCR were a fixed proportion of the weight of the mature stock, estimated principally from acoustic surveys. We test the performance of the current HCR, and some alternative HCRs, using a simulation model. The model simulates long-term single-species orange roughy stock dynamics, stock monitoring surveys, and management decisions. We allow for uncertainty in model parameters, but focus on the effects of changes in mean recruitment and recruitment variability, because the latter have been considered the primary source of uncertainty in future stock status. Results show that the current HCR is likely to lead to a sustainable fishery. Nevertheless, there are alternative HCRs that could out-perform the existing HCR. With a reliable series of biomass estimates from acoustic surveys, good knowledge of biological parameters (natural mortality in particular), some revision of a HCR to control catch, and spatial management to control habitat damage, it appears that an orange roughy fishery might achieve best-practice sustainability and environmental standards. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
48. Integration and holistic analysis of multiple multidimensional soil data sets.
- Author
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Pilkington, Lisa I., Kerner, William, Bertoldi, Daniela, Larcher, Roberto, Lee, Soon A., Goddard, Matthew R., Albanese, Davide, Franceschi, Pietro, and Fedrizzi, Bruno
- Subjects
- *
ECOSYSTEMS , *CONFOUNDING variables , *COMPLEX matrices , *BIOLOGICAL systems , *SOILS - Abstract
Complex matrices such as soil have a range of measurable characteristics, and thus data to describe them can be considered multidimensional. These characteristics can be strongly influenced by factors that introduce confounding effects that hinder analyses. Traditional statistical approaches lack the flexibility and granularity required to adequately evaluate such matrices, particularly those with large dataset of varying data types (i.e. quantitative non-compositional, quantitative compositional). We present a statistical workflow designed to effectively analyse complex, multidimensional systems, even in the presence of confounding variables. The developed methodology involves exploratory analysis to identify the presence of confounding variables, followed by data decomposition (including strategies for both compositional and non-compositional quantitative data) to minimise the influence of these confounding factors such as sampling site/location. These data processing methods then allow for common patterns to be highlighted in the data, including the identification of biomarkers and determination of non-trivial associations between variables. We demonstrate the utility of this statistical workflow by jointly analysing the chemical composition and fungal biodiversity of New Zealand vineyard soils that have been managed with either organic low-input or conventional input approaches. By applying this pipeline, we were able to identify biomarkers that distinguish viticultural soil from both approaches and also unearth links and associations between the chemical and metagenomic profiles. While soil is an example of a system that can require this type of statistical methodology, there are a range of biological and ecological systems that are challenging to analyse due to the complex interplay of global and local effects. Utilising our developed pipeline will greatly enhance the way that these systems can be studied and the quality and impact of insight gained from their analysis. [Display omitted] • Novel statistical workflow to effectively analyse complex, multidimensional systems. • Methods allow identification of biomarker and non-trivial variable associations. • Workflow demonstrated through analysing New Zealand vineyard soils. • Utility shown by jointly analysing chemical composition and fungal biodiversity. • Developed pipeline will enhance analysis of other complex multidimensional systems. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Inhibition of fish oil oxidation and the radical scavenging activity of New Zealand seaweed extracts
- Author
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Kindleysides, Sophie, Quek, Siew-Young, and Miller, Matthew R
- Subjects
- *
FISH oils , *OXIDATION , *PLANT extracts , *TEMPERATURE effect , *MARINE algae , *ANTIOXIDANTS , *SCAVENGER receptors (Biochemistry) , *DOCOSAHEXAENOIC acid - Abstract
Abstract: This study describes the potential use of New Zealand seaweed extracts as antioxidants in fish oils. The extracts from two brown seaweeds (Ecklonia radiata, Macrocystis pyrifera) and two red species (Champia sp. and Porphyra sp.), were added to hoki (Macruronus novaezelandiae) oil and assessed by production of oxidation products in an elevated temperature (60°C) storage trial. Antioxidant assays ORAC and DPPH were conducted to elucidate the radical scavenging activity of the seaweed extracts. The results showed that all the lipid-soluble seaweed extracts had some antioxidative capacity, with brown algae generally outperforming red algae species. Extracts from E. radiata performed best with significantly lower primary, secondary and total oxidation products, and higher DPPH radical scavenging ability than the commercial antioxidant, BHT. This study demonstrated the potential of brown algae seaweed extracts, in particular E. radiata, for use as antioxidants in fish oil products. [Copyright &y& Elsevier]
- Published
- 2012
- Full Text
- View/download PDF
50. The mismatch between swimming speeds and flow regimes when optimising exercise regimes to improve Chinook salmon, Oncorhynchus tshawytscha, performance.
- Author
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Prescott, Leteisha A., Symonds, Jane E., Walker, Seumas P., Miller, Matthew R., Swift, Luke, Herbert, Neill A., Semmens, Jayson M., and Carter, Chris G.
- Subjects
- *
CHINOOK salmon , *SPINAL curvatures , *SWIMMING , *ANIMAL industry , *SPEED , *LORDOSIS - Abstract
Exercise regimes provide a promising opportunity to enhance production performance during hatchery rearing, but exercise-enhanced traits are presently poorly understood in Chinook salmon. In addition, spinal health can be a concern in some farms in New Zealand and unfavourable correlations between higher condition factor and spinal curvature have been detected. Exercise regimes, in other salmonids, have improved bone mineralisation and lowered condition factor. Therefore, we hypothesise that sustained swimming could be used as a tool to improve spinal health. Here we tested the influence of low (0.3 bl s−1) and moderate (0.8 bl s−1) flow regimes on post-smolt (initial size: wet weight = 82.9 ± 0.3 g, fork length = 174.6 ± 0.2 mm) Chinook salmon feed efficiency and growth performance, as well as spinal health. We first measured the actual swimming speeds of Chinook salmon under low and moderate flow regimes to determine differences in exercise levels. Swimming speeds were not different between the flow regimes and were much higher than the set flow, because the Chinook salmon were advancing around the tank, swimming faster than the set flow at their own chosen swimming speed. Moderate flow regimes improved feed efficiency but did not influence other feed and growth metrics or spinal curvature and vertebral anomalies prevalence or severity. Production performance significantly differed between individuals with normal spinal health and those that developed spinal anomalies (vertebral compression, −fusion, and/or -vertical shift) or spinal curvature (lordosis, kyphosis, and/or scoliosis). Chinook salmon that developed spinal anomalies were smaller, grew slower, and exhibited poorer feed efficiency, whereas individuals that developed spinal curvature were significantly heavier, longer, and had higher condition factor. The probability of individuals developing spinal curvature increased with higher condition factor. These results provide critical information for industry to consider in their selective breeding objectives to curb the prevalence and severity of spinal curvature incidences. • Swimming speeds of Chinook salmon did not match the environmental flow regime. • Swimming speeds were not different between low and moderate flow regimes. • Chinook salmon reared under moderate flow regimes showed improved feed efficiency. • Higher condition factor increases susceptibility of developing spinal curvature. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
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