Search

The assignment of individuals to a population can be of importance for the identification of mass disaster victims or criminal offenders in the field of forensic genetics. This assignment is based on biostatistical methods that process data of ancestry informative markers (AIMs), which are selected based on large allele frequency differences between the populations of interest. However, population assignments of individuals with an admixed genetic background are challenging. Admixed individuals are genetic mosaics of chromosomal segments from the parental populations, which may lead to ambiguous or no population assignment. This is problematic since admixture events are a substantial part of human history. In this study, we present challenges of interpreting the evidential weight of population assignments. We used Genogeographer for likelihood ratio (LR) calculations and Brazilians as examples of admixed individuals. Brazilians are a very heterogenous population representing a three-way admixture between Native Americans, Europeans, and Africans. Ancestry informative markers were typed in a total of 589 individuals from Brazil using the Precision ID Ancestry Panel. The Brazilians were assigned to six metapopulations (East Asia, Europe, Middle East, North Africa, South-Central Asia, Sub-Saharan Africa) defined in the Genogeographer software and LRs were calculated if the AIM profile was not an outlier in all metapopulations and simulated two-way (1:1) admixtures of the six metapopulations. Population assignments failed for 55% of the samples. These samples had significantly higher genetic contributions from East Asia, South-Central Asia and Sub-Saharan Africa, and significantly lower genetic contributions from Europe. Most of the individuals with population assignments were assigned to the metapopulations of Middle East (58%) or North Africa (36%), followed by Europe (4%), South-Central Asia (1%), and Sub-Saharan Africa (1%). For 8% of the samples, population assignments were only possible when assignments to simulated two-way (1:1) admixtures of the six metapopulations were considered. Most of these individuals were assigned to two-way admixtures of North Africa, South-Central Asia, or Sub-Saharan Africa. Relatively low median likelihood ratios (LRs<1000) were observed when comparing population likelihoods for Europe, Middle East, North Africa, South-Central Asia, or simulated 1:1 admixtures of these metapopulations. Comparisons including East Asian or Sub-Saharan African populations resulted in larger median LRs (LR>1010). The results suggested that the Precision ID Ancestry Panel provided too little information and that additional markers specifically selected for sub-continental differentiation may be required for accurate population assignment of admixed individuals. Furthermore, a Genogeographer database with additional populations including admixed populations would be advantageous for interpretation of admixed AIM profiles. It would likely increase the number of population assignments and illustrate alternatives to the most likely population, which would be valuable information for the case officer when writing the case report. • 266 out of 589 Brazilians were assigned to populations using Genogeographer. • Brazilians were assigned to Middle East, North Africa, or admixture populations. • Higher Asian and African genetic contributions in samples that failed assignments. • Small likelihood ratios (<1000) may indicate admixture in individuals. [ABSTRACT FROM AUTHOR]

Determining the relative role of various cues on seed germination in Mediterranean plants is important to understanding their response to variable conditions. We studied germination responses of 12 eastern Mediterranean Basin species ( Alyssum caricum, A. minus, Carthamus dentatus, Daucus broteri, D. carota, Hypericum aviculariifolium, Muscari comosum, Onopordum caricum, Rumex crispus, Sarcopoterium spinosum, Silene vulgaris, Smyrnium rotundifolium) to different smoke and nitrate concentrations in laboratory. Smoke treatments resulted in significant increase in germination of D. carota, O. caricum, and S. spinosum, but had a negative effect on germination of Hypericum aviculariifolium. Of the 12 studied species, five showed significant improvement in germination after at least one of the nitrate treatments compared with the control. In total, smoke and nitrate treatments significantly increased the germination percentage in six of the 12 studied species. All the species that have smoke- and/or nitrate-stimulated germination were propagule-persisters (P+), able to recruit after fire. The results reveal that both smoke and nitrate improve germination of Mediterranean species. Our results also suggest the presence of species-specific germination response to smoke and nitrate in Mediterranean plants. [ABSTRACT FROM AUTHOR]

Background: Nonadherence is common among patients with schizophrenia, although the rates vary according to means of assessment and patient population. Failure to adhere to medication can have a major impact on the course of illness and treatment outcomes, including increasing the risk of relapse and rehospitalization. Understanding psychiatrists' perception of the causes and consequences of nonadherence is crucial to addressing adherence problems effectively. Methods: The Europe, the Middle East, and Africa (EMEA) Spanish Adherencia Terapéutica en la Esquizofrenia (ADHES) survey was conducted by questionnaire during January-March 2010 among psychiatrists treating patients with schizophrenia in 36 countries. The survey comprised 20 questions. In addition to recording the demographic details of the 4722 respondents (∼12% response rate), it canvassed their preferred methods of assessing adherence, their perceptions of adherence rates, reasons for nonadherence, and strategies to improve adherence. Results: Psychiatrists estimated that 53% of their patients with schizophrenia were partially/nonadherent during the previous month. They estimated only one-third of patients who deteriorated after stopping medication were able to attribute this to nonadherence. Psychiatrists assessed adherence most often by patient interview. Lack of insight was viewed as the most important cause of medication discontinuation, followed by patients feeling better and thinking their medication unnecessary, and experiencing undesirable side effects. Considerably fewer psychiatrists viewed insufficient efficacy, cognitive impairment, or drug/alcohol abuse as the most important reasons for their patients stopping medication. Conclusion: Psychiatrists throughout EMEA recognize the impact of partial/nonadherence to medication, with patient enquiry being the most commonly used means of assessment. There remains a need for more proactive management of patients with schizophrenia, particularly in increasing patient insight of their illness in order to improve adherence and minimize the consequences of relapse. Strategies focused on raising awareness of the importance of adherence are also warranted, with the aim of improving patient outcomes in schizophrenia. [ABSTRACT FROM AUTHOR]

Abstract An aurochs right humerus with a fragment of an embedded projectile point was discovered during excavations at early Neolithic Göbekli Tepe in south-eastern Turkey. Evidence for hunting trauma in bones is extremely rare in the prehistoric record from the Near East and Africa, while the dataset from Europe is much larger. In this contribution a hunting lesion from Göbekli Tepe and its context will be described and discussed against the background of data on similar hunting lesions found in Europe, the Near East and Africa. Communal hunting is identified as one strategy to hunt down large game like aurochs, which, in the case of Göbekli Tepe, will be placed in the socio-cultural context of large scale gatherings. [ABSTRACT FROM AUTHOR]