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Harmful algal blooms (HABs) are a major barrier to the stable and efficient operation of seawater reverse osmosis (SWRO) desalination plants. Although the intensity varies regionally, the occurrence of HABs impairs plant operation through severe particulate, organic, and biological fouling of both pretreatment and RO systems. As a result, considerable effort has been put into developing and optimizing pre-treatment techniques to mitigate these problems. This study reviews the historical changes and current status of pretreatment applications based on >110 datasets for large SWRO desalination plants. Chronological analysis underscores the increasing trend in the operation of dissolved air flotation and ultrafiltration systems since severe HABs in the Middle East from 2008 to 2009. The impact of HAB characteristics on system performance was also analyzed, and the efficiency of current pretreatment systems for the removal of HABs was evaluated, along with proposals for operational guidelines. Finally, future strategies for i) intelligent monitoring and prediction of HABs, ii) improvement of unit processes for the removal of algal organic matter, and iii) utilization of algal biomass to alleviate environmental impact were systematically delineated for smarter, safer, and greener operation of future SWRO desalination plants in response to the occurrence of HABs. [Display omitted] • Review on the impact of harmful algal blooms (HABs) on seawater desalination • Analysis of >110 datasets of full-scale SWRO desalination plants • Historical trends and current practice of pretreatment applications • Guidelines for pretreatment operation under HABs occurrences • Future operational directions for smarter, safer and greener desalination practice [ABSTRACT FROM AUTHOR]