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Background: The dynamics of carbon (C), nitrogen (N), and phosphorus (P) in soils determine their fertility and crop growth in agroecosystems. These dynamics depend on microbial metabolism, which in turn depends on nutrient availability. Farmers typically apply either mineral or organic fertilizers to increase the availability of nutrients in soils. Phosphorus, which usually limits plant growth, is one of the most applied nutrients. Our knowledge is limited regarding how different forms of P impact the ability of microbes in soils to produce the enzymes required to release nutrients, such as C, N and P from different substrates., Methods: In this study, we used the arable layer of a calcareous soil obtained from an alfalfa cropland in Cuatro Cienegas, México, to perform an incubation experiment, where five different phosphate molecules were added as treatments substrates: three organic molecules (RNA, adenine monophosphate (AMP) and phytate) and two inorganic molecules (calcium phosphate and ammonium phosphate). Controls did not receive added phosphorus. We measured nutrient dynamics and soil microbial activity after 19 days of incubation., Results: Different P molecules affected potential microbial C mineralization (CO 2 -C) and enzyme activities, specifically in the organic treatments. P remained immobilized in the microbial biomass (Pmic) regardless of the source of P, suggesting that soil microorganisms were limited by phosphorus. Higher mineralization rates in soil amended with organic P compounds depleted dissolved organic carbon and increased nitrification. The C:N:P stoichiometry of the microbial biomass implied a change in the microbial community which affected the carbon use efficiency (CUE), threshold elemental ratio (TER), and homeostasis., Conclusion: Different organic and inorganic sources of P affect soil microbial community structure and metabolism. This modifies the dynamics of soil C, N and P. These results highlight the importance of considering the composition of organic matter and phosphate compounds used in agriculture since their impact on the microbial activity of the soil can also affect plant productivity., Competing Interests: The authors declare there are no competing interests., (©2024 Chavez-Ortiz et al.)

A field experiment was carried out to quantify the effect of a native bacterial inoculant on the growth, yield, and quality of the wheat crop, under different nitrogen (N) fertilizer rates in two agricultural seasons. Wheat was sown under field conditions at the Experimental Technology Transfer Center (CETT-910), as a representative wheat crop area from the Yaqui Valley, Sonora México. The experiment was conducted using different doses of nitrogen (0, 130, and 250 kg N ha -1 ) and a bacterial consortium (BC) ( Bacillus subtilis TSO9, B. cabrialesii subsp. tritici TSO2 T , B. subtilis TSO22, B. paralicheniformis TRQ65, and Priestia megaterium TRQ8). Results showed that the agricultural season affected chlorophyll content, spike size, grains per spike, protein content, and whole meal yellowness. The highest chlorophyll and Normalized Difference Vegetation Index (NDVI) values, as well as lower canopy temperature values, were observed in treatments under the application of 130 and 250 kg N ha -1 (the conventional Nitrogen dose). Wheat quality parameters such as yellow berry, protein content, Sodium dodecyl sulfate (SDS)-Sedimentation, and whole meal yellowness were affected by the N dose. Moreover, the application of the native bacterial consortium, under 130 kg N ha -1 , resulted in a higher spike length and grain number per spike, which led to a higher yield (+1.0 ton ha -1 vs . un-inoculated treatment), without compromising the quality of grains. In conclusion, the use of this bacterial consortium has the potential to significantly enhance wheat growth, yield, and quality while reducing the nitrogen fertilizer application, thereby offering a promising agro-biotechnological alternative for improving wheat production.

Over the past 30 years, the stony coral Acropora palmata has experienced an excessive loss of individuals showing few signs of recovery throughout the Mexican Caribbean, resulting in long stretches of coral rubble structures. When the coral dies, the skeleton begins to be colonized by algae, sponges, virus, bacteria and other microorganisms, forming a new community. Here we analyze, using a metagenomic approach, the diversity and biogeochemical cycles associated to coral rubble in La Bocana (Puerto Morelos, QRoo, Mexico). This study provides the first broad characterization of coral rubble associated communities and their role in biogeochemical cycling, suggesting a potential view of a world where coral reefs are no longer dominated by corals. [ABSTRACT FROM AUTHOR]

Metagenomic and traditional paleolimnological approaches are suitable to infer past biological and environmental changes, however, they are often applied independently, especially in tropical regions. We combined both approaches to investigate Holocene Prokaryote and Eukaryote diversity and microbial metabolic pathways in ancient Lake Chalco, Mexico. Here, we report on diversity among a large number of lineages (36,722 OTUs) and functional diversity (27,636,243 non-clustered predicted proteins, and 6,144 annotated protein-family genes). The most abundant domain is Bacteria (81%), followed by Archaea (15%) and Eukarya (3%). We also determined the diversity of protein families and their relationship to metabolic pathways. The early Holocene (> 11,000 cal years BP) lake was characterized by cool, freshwater conditions, which later became warmer and hyposaline (11,000-6,000 cal years BP). We found high abundances of cyanobacteria, and fungi groups associated with mature forests in these sediments. Bacteria and Archaea include mainly anaerobes and extremophiles that are involved in the sulfur, nitrogen, and carbon cycles. We found evidence for early human impacts, including landscape modifications and lake eutrophication, which began ~ 6,000 cal years BP. Subsaline, temperate conditions were inferred for the past 5,000 years. Finally, we found nitrogen-fixing bacteria and protein-family genes that are linked to contaminated environments, as well as several fungal pathogens of crops in near-surface sediments.

A geographically isolated maize landrace cultivated on nitrogen-depleted fields without synthetic fertilizer in the Sierra Mixe region of Oaxaca, Mexico utilizes nitrogen derived from the atmosphere and develops an extensive network of mucilage-secreting aerial roots that harbors a diazotrophic (N2-fixing) microbiota. Targeting these diazotrophs, we selected nearly 600 microbes of a collection obtained from mucilage and confirmed their ability to incorporate heavy nitrogen (15N2) metabolites in vitro. Sequencing their genomes and conducting comparative bioinformatic analyses showed that these genomes had substantial phylogenetic diversity. We examined each diazotroph genome for the presence of nif genes essential to nitrogen fixation (nifHDKENB) and carbohydrate utilization genes relevant to the mucilage polysaccharide digestion. These analyses identified diazotrophs that possessed the canonical nif gene operons, as well as many other operon configurations with concomitant fixation and release of >700 different 15N labeled metabolites. We further demonstrated that many diazotrophs possessed alternative nif gene operons and confirmed their genomic potential to derive chemical energy from mucilage polysaccharide to fuel nitrogen fixation. These results confirm that some diazotrophic bacteria associated with Sierra Mixe maize were capable of incorporating atmospheric nitrogen into their small molecule extracellular metabolites through multiple nif gene configurations while others were able to fix nitrogen without the canonical (nifHDKENB) genes., Competing Interests: The authors declare no conflicts of interests relevant to this work for employment, consultancy, patents, products in development, or marketed products. None of the authors are employed by the major funding agency of this work, MARS, Inc., but were employed by UC Davis. This does not alter our adherence to PLOS ONE policies on sharing data and materials.

Chloroflexales (Chloroflexi) are typical members of the anoxygenic photosynthesizing component of microbial mats and have mostly been characterized from communities associated to hot springs. Here, we report the assembly of five metagenome-assembled genomes (MAGs) of a novel lineage of Chloroflexales found in mesophilic lithifying microbial mats (microbialites) in Lake Alchichica (Mexico). Genomic and phylogenetic analyses revealed that the bins shared 92% of their genes, and these genes were nearly identical despite being assembled from samples collected along a depth gradient (1-15 m depth). We tentatively name this lineage Candidatus Lithoflexus mexicanus. Metabolic predictions based on the MAGs suggest that these chlorosome-lacking mixotrophs share features in central carbon metabolism, electron transport, and adaptations to life under oxic and anoxic conditions, with members of two related lineages, Chloroflexineae and Roseiflexineae. Contrasting with the other diverse microbialite community members, which display much lower genomic conservation along the depth gradient, Ca. L. mexicanus MAGs exhibit remarkable similarity. This might reflect a particular flexibility to acclimate to varying light conditions with depth or the capacity to occupy a very specific spatial ecological niche in microbialites from different depths. Alternatively, Ca. L. mexicanus may also have the ability to modulate its gene expression as a function of the local environmental conditions during diel cycles in microbialites along the depth gradient., (© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)

Nitrogen plays an important role in the metabolism of living organisms due to the variety of physiological functions that involve molecules that contain it. This study aimed to estimate genetic parameters for milk nitrogen fractions and the casein:protein ratio in Mexican Brown Swiss population. Milk samples from 317 cows were used to determine total (TN), non-protein (NPN), and non-casein (NCN) nitrogen. Then, crude (CP), true (TP), and whey (WP) proteins, and casein (Cas) percentages were obtained. In addition, the ratios (%) Cas:CP (CCP) and Cas:TP (CTP) were calculated. (Co)variance components and genetic parameters were estimated using an animal model. The pedigree included 2616 animals. Heritabilities were obtained from single-trait and genetic correlations from bivariate analyses. The variation among cows was large for the studied traits. Heritability estimates could be regarded as high (> 0.7) for NCN, WP, CCP, and CTP, while for the rest of the traits, the estimates were from moderate to low magnitude. Genetic correlations estimates differed in magnitude, ranging from - 0.9 to 0.9. There is enough additive genetic variability to achieve genetic improvement for the traits studied; therefore, they could be considered in a breeding program for the studied population.

Microbial communities play a central role in the N cycle of oceanic oxygen minimum zones (OMZs), such as in the Eastern Tropical North Pacific (ETNP). We explored the spatial distribution of the genetic potential for ammonia oxidation (amoA gene for bacteria and archaea), denitrification (nirS and nirK), anaerobic ammonium oxidation (anammox) (hzo) and dissimilarity nitrate reduction to ammonia (DNRA) (nrfA) and their relationships with the hydrological variables and isotopic composition of nitrate in the ETNP off Mexico. Oxygen concentration, the availability of N chemical forms and the upwelling shaped the distribution of N cycling genes along the water column. The high abundance of N genes and the isotopic composition of nitrate suggest the N cycling is very dynamic in the OMZ core. The accumulation of nitrite, the high abundance of archaeal amoA genes, and the deviation of the N and O isotopes of nitrate from the expected 1:1 ratio for nitrate reduction in the upper portion of this OMZ indicate that nitrification is a relevant process that fuels the denitrifier community. Conversely, the high abundances of nitrate, ammonium and nrfA genes in the deeper layer indicate that DNRA is a crucial process enhancing anammox there. These results show the need for more detailed studies of the N processes in OMZs., (© FEMS 2019.)

In the semi-arid highlands of central Mexico, triticale (× Triticosecale L.) is emerging as an alternative, less water-demanding forage crop than alfalfa for dairy cattle. Studies reported here were aimed at evaluating triticale hay (TH) relative to alfalfa hay (AH) for lactating cow performance, apparent digestibility, N partition, and ruminal degradation kinetics of dry matter (DM), crude protein (CP), and neutral detergent fiber (NDF). Study 1 was conducted on a privately owned farm. Four barns were used to conduct 4 replicated 3 × 3 Latin squares (1 barn = 1 square), where each barn included 3 pens (experimental units) receiving 1 of 3 dietary treatments. Each pen had 62 Holstein dairy cows. All diets included a forage-to-concentrate ratio of 42:58 (DM basis), which is typical for intensive dairy farms of the region. Dietary treatments were formulated to replace AH with TH on a CP basis, and included (DM basis) 15.1% AH and 0% TH, 9.0% AH and 7.4% TH, and 0% AH and 16.4% TH. Diets were iso-energetic (1.64 Mcal of net energy for lactation/kg of DM) and iso-nitrogenous (17.9% CP). Pen-level DM intake and milk production were from all cows in the pen, but pen-level milk composition, apparent digestibility, and N partitioning were from 8 cows (observational units) randomly selected in each pen. Orthogonal contrasts were used to determine linear and quadratic effects of increasing TH from 0 to 7.4, and 16.4% of dietary DM. Although DM intake was not affected, there was a tendency for CP intake to decline linearly and for NDF intake to increased linearly as TH replaced AH in the diet. Milk production declined linearly by 0.077 kg/d for each additional percentage unit of TH in the diet, which amounted to a 3.5% decline when TH replaced AH entirely. However, no effect was observed on energy-corrected milk production because of a compensatory linear effect of increasing milk fat concentration with the incorporation of TH in the diet. Total-tract NDF digestibility tended to increase linearly by 18.5%, but no differences were detected for urinary urea-N excretion and for N utilization estimated as milk N/(fecal N + urinary N + milk N). Study 2 was an in situ trial conducted to determine the degradation kinetics of AH and TH used in study 1. In spite of differences in degradation kinetics parameters for DM, CP, and NDF, only NDF effective ruminal degradation tended to be greater for TH than AH. Replacing AH with TH at the level typically found in intensive dairy farms of the semi-arid regions of Mexico had minimal effects on milk production and N utilization., (Copyright © 2019 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

Nitrogen (N) plays an important role in small-scale dairy systems, both in production costs and as an indicator of environmental impact. The objective of this study was to quantify nitrogen inputs and outputs to identify areas for improvement in nitrogen utilisation efficiency (NUE). Evaluation was in 12 small-scale dairy farms with different feeding strategies. Six followed the traditional cut and carry of irrigated temperate pastures (CUT), and six have implemented grazing of pastures (GRZ), quantifying N inputs and outputs from May 2016 to April 2017. Data were analysed by ANOVA following a split-plot model with season (rainy or dry) as main plots and feeding strategy (CUT or GRZ) as split-plots, with results in kilograms N per hectare and kilograms N per cow. There were differences (P < 0.05) between seasons and strategies in N inputs from purchased N fertilisers and purchased feeds as concentrates and roughages, showing different N inputs and outputs whether in CUT or GRZ strategies. There were also significant interactions between seasons and strategies as in the sale of animals, where GRZ sell throughout the year, while CUT sell at the beginning of the dry season. N balance ranged from 33.9 to 183.0 kg N/ha, and 37.8 to 111.0 as kilograms N per cow with an interaction (P < 0.05) between season and strategies. There was a larger N surplus in GRZ during the rainy season from fertiliser inputs, which reduced N utilisation efficiency (NUE). Mean NUE in kilograms N per hectare and kilograms N per cow was 19%, with the higher efficiency for GRZ in the dry season. Farms with the best NUE had lower use of fertilisers and purchased feeds.

Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.

An increase of nitrogen deposition resulting from human activities is not only a major threat for global biodiversity, but also for human health, especially in highly populated regions. It is thus important and in some instances legally mandated to monitor reactive nitrogen species in the atmosphere. The utilization of widely distributed biological species suitable for biomonitoring may be a good alternative. We assessed the suitability of an ensemble of atmospheric biomonitors of nitrogen deposition by means of an extensive sampling of a lichen, two mosses, and a bromeliad throughout the Valley of Mexico, whose population reaches 30 million, and subsequent measurements of nitrogen metabolism parameters. In all cases we found significant responses of nitrogen content, C:N ratio and the δ 15 N to season and site. In turn, the δ 15 N for the mosses responded linearly to the wet deposition. Also, the nitrogen content (R 2  = 0.7), the C:N ratio (R 2  = 0.6), and δ 15 N (R 2  = 0.5) for the bromeliad had a linear response to NOx. However, the bromeliad was not found in sites with NOx concentrations exceeding 80 ppb, apparently of as a consequence of excess nitrogen. These biomonitors can be utilized in tandem to determine the status of atmospheric nitrogenous pollution in regions without monitoring networks for avoiding health problems for ecosystems and humans.

Plants are associated with a complex microbiota that contributes to nutrient acquisition, plant growth, and plant defense. Nitrogen-fixing microbial associations are efficient and well characterized in legumes but are limited in cereals, including maize. We studied an indigenous landrace of maize grown in nitrogen-depleted soils in the Sierra Mixe region of Oaxaca, Mexico. This landrace is characterized by the extensive development of aerial roots that secrete a carbohydrate-rich mucilage. Analysis of the mucilage microbiota indicated that it was enriched in taxa for which many known species are diazotrophic, was enriched for homologs of genes encoding nitrogenase subunits, and harbored active nitrogenase activity as assessed by acetylene reduction and 15N2 incorporation assays. Field experiments in Sierra Mixe using 15N natural abundance or 15N-enrichment assessments over 5 years indicated that atmospheric nitrogen fixation contributed 29%-82% of the nitrogen nutrition of Sierra Mixe maize., Competing Interests: Howard-Yana Shapiro is affiliated with Mars, Incorporated, one of the research sponsors. Author Cristobal Heitmann was unable to confirm authorship or contributions himself, and this was carried out collectively by the other co-authors.

This work presents an experimental-theoretical strategy for a batch process for lead removal by photosynthetic consortium, conformed by algae and bacteria. Photosynthetic consortium, isolated from a treatment plant wastewater of Tecamac (Mexico), was used as inoculum in bubble column photobioreactors. The consortium was used to evaluate the kinetics of lead removal at different initial concentrations of metal (15, 30, 40, 50, and 60 mgL -1 ), carried out in batch culture with a hydraulic residence time of 14 days using Bold's Basal mineral medium. The photobioreactor was operated under the following conditions: aeration of 0.5 vvm, 80 μmol m -2  s -1 of photon flux density and a photoperiod light/dark 12:12. After determining the best growth kinetics of biomass and metal removal, they were tested under different ratios (30 and 60%) of wastewater-culture medium. Additionally, the biomass growth (X), nitrogen consumption (N), chemical oxygen demand (COD), and metal removal (Pb) were quantified. Achieved lead removal was 97.4% when the initial lead concentration was up to 50 mgL -1 using 60% of wastewater. Additionally, an unstructured-type mathematical model was developed to simulate COD, X, N, and lead removal. Furthermore, a comparison between the Levenberg-Marquardt (L-M) optimization approach and Genetic Algorithms (GA) was carried out for parameter estimation. Also, it was concluded that GA has a slightly better performance and possesses better convergence and computational time than L-M. Hence, the proposed method might be applied for parameter estimation of biological models and be used for the monitoring and control process.

The simultaneous removal of sulfide and p-cresol was carried out by using a marine-denitrifying consortium collected in the coastal zone of Sonora, Mexico. Different experimental conditions were used to evaluate the capacity of the consortium to simultaneously eliminate nitrate, sulfide, and p-cresol. For instance, the first set of assays was conducted at different sulfide concentrations (20, 50, and 100 mg S(2À) L(À1) ), with a fixed concentration of p-cresol (45 mg C L(À1) ). The second set of assays was developed at different concentrations of p-cresol (45, 75, and 100 mg C L(-1) ), in the presence of 20 mg S(2À) L(À1) . In all cases, the concentration of nitrate was stoichiometrically added for the complete oxidization of the substrates. The results showed removal efficiencies up to 92% for p-cresol and nitrate at 20 and 50 mg S(2À) L(À1) ; whereas at 100 mg S(2À) L(À1) removal efficiencies were 77% and 59% for p-cresol and nitrate, respectively. On the other hand, sulfide (20 mg L(À1) ) was completely removed under different concentrations of p-cresol tested, with a partial accumulation of nitrite according to the increment of p-cresol concentration. The results obtained indicate that the marine consortium was able to simultaneously remove the pollutants studied., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

1. Chiropterophilic flowers secrete sugar nectar with low-Nitrogen (N hereafter) content and small amounts of amino acids, which may function to attract animals; nevertheless, the role that micronutrients have on the foraging decisions of Neotropical nectarivorous bats is unknown. 2. We offered the nectar specialist Leptonycteris yerbabueanae and the omnivore Glossophaga soricina pairs of experimental diets mimicking either the N content or the relative abundance of 17 amino acids found in the floral nectar from the main plant species visited by these bats in a tropical dry forest. We addressed the following research questions: (i) Do bats select N-containing or sugar-only nectar differently based on bats' N nutritional status? (ii) Does the presence of N in nectar affect the capacity of bats to discriminate and select other nectar traits such as sugar concentration? and (iii) Are bats able to distinguish among the flavours generated by the amino acid relative abundance present in the nectar from plants they typically encounter in nature? 3. Our results showed that: (i) bats did not consider nectar N content regardless of their N nutritional condition, (ii) the nectar specialist L. yerbabuenae showed a preference for the most concentrated sugar-only nectar but changed to be indifferent when nectar contained N, and (iii) L. yerbabuenae preferred diets without amino acids and preferred the taste of the amino acids present in the nectar of Pachycereus pecten (Cactaceae) over those present in the nectar of Ceiba aesculifolia (Bombacaceae). 4. Our results suggest that regardless of the low concentrations at which N and amino acids are present in floral nectar, their presence affects bats' food selection by interfering with the bats' ability to detect differences in sugar concentrations, and by offering particular flavours that can be perceived and selected by nectarivorous bats. We discuss the ecological implications of the presence of N and amino acids in nectar on bats' foraging decisions., (© 2013 The Authors. Journal of Animal Ecology © 2013 British Ecological Society.)

Trade of ornamental aquatic species is a multi-billion dollar industry responsible for the introduction of myriad fishes into novel ecosystems. Although aquarium invaders have the potential to alter ecosystem function, regulation of the trade is minimal and little is known about the ecosystem-level consequences of invasion for all but a small number of aquarium species. Here, we demonstrate how ecological stoichiometry can be used as a framework to identify aquarium invaders with the potential to modify ecosystem processes. We show that explosive growth of an introduced population of stoichiometrically unique, phosphorus (P)-rich catfish in a river in southern Mexico significantly transformed stream nutrient dynamics by altering nutrient storage and remineralization rates. Notably, changes varied between elements; the P-rich fish acted as net sinks of P and net remineralizers of nitrogen. Results from this study suggest species-specific stoichiometry may be insightful for understanding how invasive species modify nutrient dynamics when their population densities and elemental composition differ substantially from native organisms. Risk analysis for potential aquarium imports should consider species traits such as body stoichiometry, which may increase the likelihood that an invasion will alter the structure and function of ecosystems.

The biodegradation of oil sludge from Mexican sour gas and petrochemical facilities contaminated with a high content of hydrocarbons, 334.7 ± 7.0 g kg(-1) dry matter (dm), was evaluated. Studies in microcosm systems were carried out in order to determine the capacity of the native microbiota in the sludge to reduce hydrocarbon levels under aerobic conditions. Different carbon/nitrogen/phosphorous (C/N/P) nutrient ratios were tested. The systems were incubated at 30 °C and shaken at 100 rpm. Hydrocarbon removals from 32 to 51% were achieved in the assays after 30 days of incubation. The best assay had C/N/P ratio of 100/1.74/0.5. The results of the Microtox(®) and Ames tests indicated that the original sludge was highly toxic and mutagenic, whereas the best assay gave a final product that did not show toxicity or mutagenicity., (Copyright © 2011 Elsevier Ltd. All rights reserved.)

The strain SmSA, identified as Serratia marcescens and known as a biosurfactant producer, was isolated from hydrocarbon contaminated soil from Veracruz, México. The interactions among the C/N, C/Mg and C/Fe ratios have not been examined for this microorganism. In this work was evaluated the effect of these nutrients at three levels using a mineral medium with glucose as the carbon source. A Box-Behnken experimental design was utilised to maximise biosurfactant production, which was assessed by oil spreading and surface tension tests. The treatment with C/N=5, C/Fe=26,000 and C/Mg=30 showed the best result since the surface tension was reduced to 30 mN m(-1). The multiple regression and response surface analyses indicated that the interaction between C/N and C/Mg had the utmost effect on the reduction of surface tension and biosurfactant production. The conditions of the best treatment were used to scale up biosurfactant production in a 3L bioreactor giving a yield of 4.1 gL(-1) of pure biosurfactant. It was found that the biosurfactant was mainly produced in the exponential phase and decreased the surface tension to 31 mN m(-1). The contact between the biosurfactant with heavy oil (15° API) increased its displacement from 9.3 to 18 cm., (Copyright © 2011 Elsevier B.V. All rights reserved.)

Background: Conservation tillage promotes the accretion of soil organic matter and often leads to improved soil fertility and moisture availability. However, few studies have looked at the physiological response of crop plants to different tillage practices. It was therefore hypothesised that measuring the nutrient concentrations and stable isotope composition (δ(13)C, δ(18)O, δ(15)N) of shoots could help evaluate the physiological response of common bean (Phaseolus vulgaris L.) to different tillage treatments (no tillage (NT) and mouldboard ploughing (MP)) in a rain-fed farming system in northern Mexico., Results: NT significantly enhanced shoot phosphorus concentration in bean plants. Tillage exerted a negative effect on the extent of root colonisation (%) by arbuscular mycorrhizal fungi (AMF). Lower shoot δ(18)O but unchanged δ(13)C values in plants from the NT system suggest enhanced stomatal conductance but also enhanced photosynthetic rate, which overall resulted in unchanged water use efficiency. Bean plants in the NT system showed lower shoot δ(15)N values, which suggests that a larger proportion of total plant nitrogen was obtained through atmospheric nitrogen fixation in this treatment., Conclusion: Greater diversity of AMF soil communities and heavier colonisation of roots by AMF in the NT compared with the MP system appeared to contribute to improved crop nutrition, water relations and yield in this rain-fed agroecosystem., (2010 Society of Chemical Industry.)

Core leaf traits, such as leaf mass per area (LMA) and leaf nitrogen (N) and phosphorus (P) concentrations in green and senesced leaves, are currently used to discern patterns of variation, constraints, and relations to nutrient availability and climate among plant species up to the biomes and global scale. These traits and nutrient resorption were measured in 21 woody species in three phenological groups of the Chamela tropical dry forest (TDF) during a 3-year study period under conditions of contrasting rainfall. The LMA was similar among years and showed negative relationships with green-leaf N and P concentrations, in agreement with the global assessments. Community-level mean N concentrations in green and senesced leaves did not change among years, but P concentrations decreased with lower water availability in dry years. Both mean and minimum foliar N:P mass ratios increased with diminishing rainfall, suggesting that leaf stoichiometry reflects a water control on soil P limitation in this forest. In the wet year, green-leaf N and P concentrations were not correlated, and there were high coefficients of variation among species in leaf P and N:P ratios, indicating that species variability and physiological constraints are expressed in leaf stoichiometry upon the removal of water limitation. The resorption efficiency and proficiency of P, but not N, increased in years with low rainfall, suggesting that the costs of nutrient resorption relative to acquisition from soil differ between N and P and that P conservation increases when rainfall decreases in the Chamela TDF. Our results support the proposal that water availability controls P dynamics in this ecosystem.

The saline-sodic soil of the former Lake Texcoco, a large area exposed to desertification, is a unique environment, but little is known about its microbial ecology. The objective of this study was to examine bacterial community structure, activity, and function when biosolids were added to microcosms. The application rates were such that 0, 66, 132, or 265 mg total Nk g(-1) were added with the biosolids (total C and N content 158 and 11.5 g kg(-1) dry biosolids, respectively). Approximately 60% of the biosolids were mineralized within 90 days. Microbial respiration and to a lesser extent ammonification and nitrification, increased after biosolids application. The rRNA intergenic spacer analysis (RISA) patterns for the biosolids and unamended soil bacterial communities were different, indicating that the microorganisms in the biosolids were distinct from the native population. It appears that the survival of the allochthonous microorganisms was short, presumably due to the adverse soil conditions., (Copyright 2009 Elsevier Ltd. All rights reserved.)

Bacteria isolated from Mimosa nodules in Taiwan, Papua New Guinea, Mexico and Puerto Rico were identified as belonging to either the alpha- or beta-proteobacteria. The beta-proteobacterial Burkholderia and Cupriavidus strains formed effective symbioses with the common invasive species Mimosa diplotricha, M. pigra and M. pudica, but the alpha-proteobacterial Rhizobium etli and R. tropici strains produced a range of symbiotic phenotypes from no nodulation through ineffective to effective nodulation, depending on Mimosa species. Competition studies were performed between three of the alpha-proteobacteria (R. etli TJ167, R. tropici NGR181 and UPRM8021) and two of the beta-rhizobial symbionts (Burkholderia mimosarum PAS44 and Cupriavidus taiwanensis LMG19424) for nodulation of these invasive Mimosa species. Under flooded conditions, B. mimosarum PAS44 out-competed LMG19424 and all three alpha-proteobacteria to the point of exclusion. This advantage was not explained by initial inoculum levels, rates of bacterial growth, rhizobia-rhizobia growth inhibition or individual nodulation rate. However, the competitive domination of PAS44 over LMG19424 was reduced in the presence of nitrate for all three plant hosts. The largest significant effect was for M. pudica, in which LMG19424 formed 57% of the nodules in the presence of 0.5 mM potassium nitrate. In this host, ammonium also had a similar, but lesser, effect. Comparable results were also found using an N-containing soil mixture, and environmental N levels are therefore suggested as a factor in the competitive success of the bacterial symbiont in vivo.

Effectiveness of grass barriers and vegetative filter strips (FS) for reducing transport of sediment and nutrients in runoff may depend on runoff flow conditions. We assessed the performance of (1) switchgrass (Panicum virgatum L.) barriers (0.7 m) planted above fescue (Festuca arundinacea Schreb.) filter strips under interrill (B-FS) and concentrated flow (CF-B-FS), and (2) fescue alone under interrill (FS) and concentrated flow (CF-FS) for reducing runoff, sediment, nitrogen (N), and phosphorus (P) loss from fallow plots on a Mexico silt loam. We compared exclusively the performance of barriers and filter strips separately under interrill and concentrated flow. Runoff and sediment were sampled at 1 m above and at 0.7, 4, and 8 m below the downslope edge of the sediment source area. Filter strips under interrill flow reduced 80% and those under concentrated flow reduced 72% of sediment at 0.7 m (P < 0.01). With the addition of supplemental runoff simulating runoff from a larger sediment source area, FS reduced 80%, but CF-FS reduced only 60% of sediment. The FS reduced organic N and NO(3)-N by an additional 50% (P < 0.01) more than CF-FS at 0.7 m. Although the effectiveness of both treatments increased with increasing width, CF-FS removed less sediment than FS alone at 8 m (P < 0.04). In contrast, barriers above filter strips under interrill and concentrated flow were equally effective at 8 m; decreasing runoff by 34%, sediment by 99%, and nutrients by 70%. Thus, barriers combined with FS can be an effective alternative to FS alone for sites where concentrated flows may occur.

In tropical forests with nutrient-rich soil tree's nutrient resorption from senesced leaves has not always been observed to be low. Perhaps this lack of consistence is partly owing to the nutrient resorption methods used. The aim of the study was to analyse N and P resorption proficiency from tropical rain forest trees in a nutrient-rich soil. It was hypothesised that trees would exhibit low nutrient resorption in a nutrient-rich soil. The soil concentrations of total N and extractable P, among other physical and chemical characteristics, were analysed in 30 samples in the soil surface (10 cm) of three undisturbed forest plots at 'Estaci6n de Biologia Los Tuxtlas' on the east coast of Mexico (18 degrees 34' - 18 degrees 36' N, 95 degrees 04' - 95 degrees 09' W). N and P resorption proficiency were determined from senescing leaves in 11 dominant tree species. Nitrogen was analysed by microkjeldahl digestion with sulphuric acid and distilled with boric acid, and phosphorus was analysed by digestion with nitric acid and perchloric acid. Soil was rich in total N (0.50%, n = 30) and extractable P (4.11 microg g(-1) n = 30). As expected, trees showed incomplete N (1.13%, n = 11) and P (0.11%, n = 1) resorption. With a more accurate method of nutrient resorption assessment, it is possible to prove that a forest community with a nutrient-rich soil can have low levels of N and P resorption.

The production of infective juvenile stages (IJ) of the entomopathogenic nematode Steinernema carpocapsae in the presence of its symbiotic bacterium Xenorhabdus nematophilus was carried out in orbitally agitated bottles. Four complex culture media (M1-M4) were used, containing from 8% to 28% (by vol.) agave juice (aguamiel) from Mexican maguey-pulquero (Agave spp) as the main carbohydrate source. After 20 days of fermentation, a maximum viable IJ concentration of 249,000 IJ/ml and an initial nematode population multiplication factor of x620 were achieved when medium M4 was used (aguamiel concentration in this medium was 28% by vol.). M4 medium contained (w/v): 0.3% total nitrogen, 3.2% total carbohydrates and 3.0% total fat. According to the results obtained, total carbohydrates concentration appeared to be of great importance in obtaining high IJ concentrations.

Alpha-lactalbumin, a 14-kD protein, plays a central biochemical role in the mammary gland as the regulatory subunit of lactose synthase, and also plays a nutritional role for the rapidly growing neonate as the protein in highest concentration in human milk. The current study was undertaken to better characterize alpha-lactalbumin concentrations in human milk from a variety of countries. Mature human milk (lactation duration > or =1 month) was collected from at least 50 women from nine different countries on five continents. Alpha-lactalbumin concentration was determined by HPLC. The mean +/- SD for 452 samples was 2.44 +/- 0.64 g/L. The mean value of the samples from the United States was significantly higher than that from any other country, and the mean in Mexico was significantly lower than that from every country except China and Canada. Alpha-lactalbumin concentration decreased with increasing duration of lactation and was positively correlated with total nitrogen. On average, alpha-lactalbumin contributed 16% of the total nitrogen content of human milk and consequently an important part of the amino acid content.

The nitrogenase activity and phylogenetic diversity of nitrogen fixing microorganisms in several different cyanobacterial mat types from Guerrero Negro, Baja California, Mexico were investigated by acetylene reduction assay, and by amplification and sequencing of the nitrogenase nifH gene. Acetylene reduction assays performed on a Lyngbya sp. and two Microcoleus chthonoplastes dominated microbial mats showed a typical diel pattern of nitrogenase activity in these mats. The highest rates of activity were found at night, with 40 and 37 micromol C(2)H(4) m(-2) h(-1) measured in the Microcoleus mats, and 9 micromol C(2)H(4) m(-2) h(-1) in the Lyngbya mat. Nitrogenase sequences were obtained that clustered with sequences from cyanobacteria, gamma-Proteobacteria, and cluster 3 of nifH. In addition, novel and divergent sequences were also recovered. The composition of nifH sequence types recovered differed between the Lyngbya and Microcoleus mats. Interestingly, nifH sequences belonging to filamentous cyanobacteria were absent in most mat samples even though both mats were dominated by filamentous cyanobacteria. nifH sequences clustering with those of unicellular cyanobacteria were found, some of which were virtually identical to the nifH sequence from Halothece sp. MPI96P605, which had previously been isolated from the mat. In manipulation experiments, the Lyngbya and Microcoleus mats were allowed to re-colonize a cleared surface. In these developing mats, nifH sequences not previously observed in the mats were discovered. Our results showed that organisms capable of N(2) fixation were present in N(2) fixing mats, that the composition of the N(2) fixing communities differs between mats, and that filamentous cyanobacterial diazotrophs may not have a large role in the early stages of mat development.

It has been shown that UV-A (lambda=320-400 nm) and UV-B (lambda=280-320 nm) inhibit photosynthesis, nitrogen fixation and nitrification. The purpose of this study was to determine the effects, if any, on denitrification in a microbial community inhabiting the intertidal. The community studied is the microbial mat consisting primarily of Lyngbya that inhabits the Pacific marine intertidal, Baja California, Mexico. Rates of denitrification were determined using the acetylene blockage technique. Pseudomonas fluorescens (ATCC #17400) was used as a control organism, and treated similarly to the mat samples. Samples were incubated either beneath a PAR transparent, UV opaque screen (OP3), or a mylar screen to block UV-B, or a UV transparent screen (UVT) for 2 to 3 hours. Sets of samples were also treated with nitrapyrin to inhibit nitrification, or DCMU to inhibit photosynthesis and treated similarly. Denitrification rates were greater in the UV protected samples than in the UV exposed samples the mat samples as well as for the Ps fluorescens cultures. Killed controls exhibited no activity. In the DCMU and nitrapyrin treated samples denitrification rates were the same as in the untreated samples. These data indicate that denitrification is directly inhibited by UV radiation., (c2001 COSPAR Published by Elsevier Science Ltd. All rights reserved.)

This study examined the temporal and spatial variation in the populations of bacteria from a Chihuahuan desert bajada grassland that could grow on nearly nitrogen-free medium, a nitrogen-efficient guild (NEG). A Curtis similarity index of 0.876 and nearly identical diversity and equability indexes (H' = 1.22, J = 0.46 and H' = 1.27, J = 0.48 for the crown edge and interplant samples, respectively) indicated that there was no qualitative difference between the NEG assemblages isolated from samples taken at Bouteloua eriopoda plant crowns and in nonvegetated areas 45 cm from crowns. The difference in NEG populations between the crown and interplant samples was only 2-fold, despite a 9.5-fold difference in root biomass between the sites. These differences, while consistent, were statistically significant at only 50% of the sampling times. There was over an order of magnitude difference in NEG numbers in root-associated soil and in bulk soil from the crown or intercrown sites. The typical trend for temporal variation in NEG numbers was that they increased in the spring, fluctuated dramatically over the summer, and declined at the summer's end. The pattern of soil moisture change was the only abiotic variable which showed the same fluctuation pattern as NEG numbers.

Intertidal marine microbial mats exhibited biologically mediated uptake of low molecular weight dissolved organic matter (DOM), including D-glucose, acetate, and an L-amino acid mixture at trace concentrations. Uptake of all compounds occurred in darkness, but was frequently enhanced under natural illumination. The photosystem 2 inhibitor, 3-(3,4-dichlorophenyl)-1,1-dimethyl urea (DCMU) generally failed to inhibit light-stimulated DOM uptake. Occasionally, light plus DCMU-amended treatments led to uptake rates higher than light-incubated samples, possibly due to phototrophic bacteria present in subsurface anoxic layers. Uptake was similar with either 3H- or 14C-labeled substrates, indicating that recycling of labeled CO2 via photosynthetic fixation was not interfering with measurements of light-stimulated DOM uptake. Microautoradiographs showed a variety of pigmented and nonpigmented bacteria and, to a lesser extent, cyanobacteria and eucaryotic microalgae involved in light-mediated DOM uptake. Light-stimulated DOM uptake was often observed in bacteria associated with sheaths and mucilage surrounding filamentous cyanobacteria, revealing a close association of organisms taking up DOM with photoautotrophic members of the mat community. The capacity for dark- and light-mediated heterotrophy, coupled to efficient retention of fixed carbon in the mat community, may help optimize net production and accretion of mats, even in oligotrophic waters.

A study was conducted to determine the protein requirements of normal young male subjects fed a model Mexican rural diet. The multiple-level nitrogen-balance technique was used in eight subjects; three of them were also studied when ingesting a milk diet. The mean requirements for the rural and milk diets were 112 and 105 mg N/kg body weight, respectively; accordingly, the amount of protein needed to cover the requirements of 97.5% of the population, calculated by method 3 of Rand, Scrimshaw and Young were 136 mg N/kg body weight for the rural diet, and 122 mg N/kg body weight for the milk diet. Interestingly, the NPU and the digestibility of the rural diet increased as the intake approached the requirement level.